Pregenerated sensors for SNHG30 (Homo sapiens)
Ensembl gene IDs: ENSG00000267321Ensembl transcript IDs: ENST00000592381.1, ENST00000638682.1, ENST00000659685.1, ENST00000665667.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGATTTCTGTCCCGGGCCAAAGGTGCTTCCAGCTTCCCTCTCCTTTaGTTCTCCGCCCGGCTCAGGTCTTACAGCCTAGCGCGGCTCTCG | + |
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Preference number: 5 (lower is better) Translates to: RFLSRAKGASSFPLL*FSARLRSYSLARLS Trigger: CGAGAGCCGCGCTAGGCTGTAAGACCTGAGCCGGGCGGAGAAGCAAAGGAGAGGGAAGCTGGAAGCACCTTTGGCCCGGGACAGAAATCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000665667.1 |
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| CDS GCA 90 bp | GATGGAGGTAGCCAAGCTCTCCAGATTTCTGTCCCGGGCCAAAGGTaGTTCCAGCTTCCCTCTCCTTTGCTTCTCCGCCCGGCTCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: DGGSQALQISVPGQR*FQLPSPLLLRPAQV Trigger: GACCTGAGCCGGGCGGAGAAGCAAAGGAGAGGGAAGCTGGAAGCACCTTTGGCCCGGGACAGAAATCTGGAGAGCTTGGCTACCTCCATC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000638682.1 ENST00000665667.1 |
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| CDS TCA 90 bp | CCACGAACTCCCGGGAAGACTGAGAGTGAGGCTGGAGCCAAGGCTTaGACCAAACACCCAGGAAGGAATCTGCAGCCCGCTTTTCTAAGT | + |
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Preference number: 5 (lower is better) Translates to: PRTPGKTESEAGAKA*TKHPGRNLQPAFLS Trigger: ACTTAGAAAAGCGGGCTGCAGATTCCTTCCTGGGTGTTTGGTTCAAGCCTTGGCTCCAGCCTCACTCTCAGTCTTCCCGGGAGTTCGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000592381.1 ENST00000638682.1 ENST00000659685.1 ENST00000665667.1 |
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| CDS CCA 90 bp | AGGAATCTGCAGCCCGCTTTTCTAAGTCGTAAAACTCCTACGACCTaGACTCTCTCAGGAAGCCTGCTCCGGCCTGAGGAGGATGGAGGT | + |
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Preference number: 5 (lower is better) Translates to: RNLQPAFLSRKTPTT*TLSGSLLRPEEDGG Trigger: ACCTCCATCCTCCTCAGGCCGGAGCAGGCTTCCTGAGAGAGTCCAGGTCGTAGGAGTTTTACGACTTAGAAAAGCGGGCTGCAGATTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000592381.1 ENST00000638682.1 ENST00000659685.1 ENST00000665667.1 |
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| CDS CCA 90 bp | CAAGAGTTTTCATCTCAACCCTGGTCAAAGCCAACAGTGAAGCAATaGCAATACCAGGTCAGGCTCTACTTCACTCATCATCGCATCGCT | + |
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Preference number: 5 (lower is better) Translates to: QEFSSQPWSKPTVKQ*QYQVRLYFTHHRIA Trigger: AGCGATGCGATGATGAGTGAAGTAGAGCCTGACCTGGTATTGCCATTGCTTCACTGTTGGCTTTGACCAGGGTTGAGATGAAAACTCTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000638682.1 |
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| CDS GCA 72 bp | TCCCGGGCCAAAGGTGCTTCCAGCTTCCCTCTCCTTTaGTTCTCCGCCCGGCTCAGGTCTTACAGCCTAGCG | + |
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Preference number: 6 (lower is better) Translates to: SRAKGASSFPLL*FSARLRSYSLA Trigger: CGCTAGGCTGTAAGACCTGAGCCGGGCGGAGAAGCAAAGGAGAGGGAAGCTGGAAGCACCTTTGGCCCGGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000665667.1 |
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| CDS TCA 72 bp | CCCGGGAAGACTGAGAGTGAGGCTGGAGCCAAGGCTTaGACCAAACACCCAGGAAGGAATCTGCAGCCCGCT | + |
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Preference number: 6 (lower is better) Translates to: PGKTESEAGAKA*TKHPGRNLQPA Trigger: AGCGGGCTGCAGATTCCTTCCTGGGTGTTTGGTTCAAGCCTTGGCTCCAGCCTCACTCTCAGTCTTCCCGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000592381.1 ENST00000638682.1 ENST00000659685.1 ENST00000665667.1 |
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| CDS GCA 72 bp | TCACTGCAACCTCCACCTCCTGGGTTCAAACAATTCTaGCACCTCAGCCTCCTAAGTAGCTGTGATTACAGG | + |
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Preference number: 6 (lower is better) Translates to: SLQPPPPGFKQF*HLSLLSSCDYR Trigger: CCTGTAATCACAGCTACTTAGGAGGCTGAGGTGGCAGAATTGTTTGAACCCAGGAGGTGGAGGTTGCAGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000592381.1 ENST00000638682.1 ENST00000659685.1 ENST00000665667.1 |
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| CDS CAA 90 bp | TCAGGCTCTACTTCACTCATCATCGCATCGCTGCATTTCATCTCCTaGTATTACCTAAGAGCAACCCAGTGCCCTAGTTTCACATCCAAG | + |
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Preference number: 6 (lower is better) Translates to: SGSTSLIIASLHFIS*YYLRATQCPSFTSK Trigger: CTTGGATGTGAAACTAGGGCACTGGGTTGCTCTTAGGTAATACAAGGAGATGAAATGCAGCGATGCGATGATGAGTGAAGTAGAGCCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000638682.1 |
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| CDS CCA 72 bp | TCATCTCAACCCTGGTCAAAGCCAACAGTGAAGCAATaGCAATACCAGGTCAGGCTCTACTTCACTCATCAT | + |
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Preference number: 6 (lower is better) Translates to: SSQPWSKPTVKQ*QYQVRLYFTHH Trigger: ATGATGAGTGAAGTAGAGCCTGACCTGGTATTGCCATTGCTTCACTGTTGGCTTTGACCAGGGTTGAGATGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000638682.1 |
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| CDS TCA 72 bp | AAGAGTTTTCATCTCAACCCTGGTCAAAGCCAACAGTaGAGCAATGGCAATACCAGGTCAGGCTCTACTTCA | + |
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Preference number: 6 (lower is better) Translates to: KSFHLNPGQSQQ*SNGNTRSGSTS Trigger: TGAAGTAGAGCCTGACCTGGTATTGCCATTGCTTCACTGTTGGCTTTGACCAGGGTTGAGATGAAAACTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000638682.1 |
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| CDS CAA 72 bp | ACTTCACTCATCATCGCATCGCTGCATTTCATCTCCTaGTATTACCTAAGAGCAACCCAGTGCCCTAGTTTC | + |
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Preference number: 6 (lower is better) Translates to: TSLIIASLHFIS*YYLRATQCPSF Trigger: GAAACTAGGGCACTGGGTTGCTCTTAGGTAATACAAGGAGATGAAATGCAGCGATGCGATGATGAGTGAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000638682.1 |
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| CDS CAA 90 bp | AATCCTCTGCTCCGACAACAAGAATTCAGCCTCATGCAAAATACCTaGCATCAACTTAAGAAACACTTAAGTTGCCTATGTAGGAGCATT | + |
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Preference number: 6 (lower is better) Translates to: NPLLRQQEFSLMQNT*HQLKKHLSCLCRSI Trigger: AATGCTCCTACATAGGCAACTTAAGTGTTTCTTAAGTTGATGCAAGGTATTTTGCATGAGGCTGAATTCTTGTTGTCGGAGCAGAGGATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000592381.1 ENST00000638682.1 ENST00000659685.1 ENST00000665667.1 |
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