Pregenerated sensors for SNHG3 (Homo sapiens)
Ensembl gene IDs: ENSG00000242125Ensembl transcript IDs: ENST00000413987.1, ENST00000437681.1
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGTGGCGGTGCACCTTCAGAGGCTCGCTGGGTCGGGCGGCAGCCCTaGGGGTCCCGAGGTCTCCATGGCCCACTTCTGGCCCAGGCCCGT | + |
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Preference number: 5 (lower is better) Translates to: GGGAPSEARWVGRQP*GSRGLHGPLLAQAR Trigger: ACGGGCCTGGGCCAGAAGTGGGCCATGGAGACCTCGGGACCCGCAGGGCTGCCGCCCGACCCAGCGAGCCTCTGAAGGTGCACCGCCACC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS CCA 90 bp | GGCCCAGCTTTATTTCCAACGTTGTGGAAAGGGACTTGTACATCATaGGGCAGAGCCCTATGCTCCCCTACGCCACTTGGACAGAGCCCG | + |
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Preference number: 5 (lower is better) Translates to: GPALFPTLWKGTCTS*GRALCSPTPLGQSP Trigger: CGGGCTCTGTCCAAGTGGCGTAGGGGAGCATAGGGCTCTGCCCCATGATGTACAAGTCCCTTTCCACAACGTTGGAAATAAAGCTGGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS CCA 90 bp | ACGAGGGGCCTCATGCTATCGCCTGGGGTTGGAGTACAGTGGCACTaGAGTATAGGTTTGAGTATAGGTCACTCCTGGGCTCCAGCGATT | + |
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Preference number: 5 (lower is better) Translates to: TRGLMLSPGVGVQWH*SIGLSIGHSWAPAI Trigger: AATCGCTGGAGCCCAGGAGTGACCTATACTCAAACCTATACTCCAGTGCCACTGTACTCCAACCCCAGGCGATAGCATGAGGCCCCTCGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS CCA 90 bp | GGAGTACAGTGGCACTGGAGTATAGGTTTGAGTATAGGTCACTCCTaGGCTCCAGCGATTCTCCTTCCTCCAGCTACCTATCATCATGCC | + |
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Preference number: 5 (lower is better) Translates to: GVQWHWSIGLSIGHS*APAILLPPATYHHA Trigger: GGCATGATGATAGGTAGCTGGAGGAAGGAGAATCGCTGGAGCCCAGGAGTGACCTATACTCAAACCTATACTCCAGTGCCACTGTACTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS GCA 90 bp | TCAGTCCCATCCTTCAGGGTACTGAACATTTATGTTGGCAGCCAGTaGAGGGGGCTTGACAAAGTTTCCATTGTGACTCACGTCATGAGG | + |
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Preference number: 5 (lower is better) Translates to: SVPSFRVLNIYVGSQ*RGLDKVSIVTHVMR Trigger: CCTCATGACGTGAGTCACAATGGAAACTTTGTCAAGCCCCCTGCACTGGCTGCCAACATAAATGTTCAGTACCCTGAAGGATGGGACTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000413987.1 |
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| CDS CCA 90 bp | TCACTTTACTCAGGTGAGATCTATGTAGTTACAGCAGGACACGGATaGGACTGGGCATACAGACGAATGGGGCTGACTCATCTGGCTTCT | + |
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Preference number: 5 (lower is better) Translates to: SLYSGEIYVVTAGHG*DWAYRRMGLTHLAS Trigger: AGAAGCCAGATGAGTCAGCCCCATTCGTCTGTATGCCCAGTCCCATCCGTGTCCTGCTGTAACTACATAGATCTCACCTGAGTAAAGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000413987.1 |
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| CDS CCA 90 bp | CTTGGACAGAGCCCGGGGAGAGTGACCTCCCGGGTGTATCCACGTTaGACAATCAGTGTAACGCATAAATTTACAGAATCCAATAGGAAA | + |
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Preference number: 5 (lower is better) Translates to: LGQSPGRVTSRVYPR*TISVTHKFTESNRK Trigger: TTTCCTATTGGATTCTGTAAATTTATGCGTTACACTGATTGTCCAACGTGGATACACCCGGGAGGTCACTCTCCCCGGGCTCTGTCCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS TCA 90 bp | CTTCAGGGTACTGAACATTTATGTTGGCAGCCAGTGCAGGGGGCTTaGCAAAGTTTCCATTGTGACTCACGTCATGAGGCAAGCAATTCT | + |
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Preference number: 5 (lower is better) Translates to: LQGTEHLCWQPVQGA*QSFHCDSRHEASNS Trigger: AGAATTGCTTGCCTCATGACGTGAGTCACAATGGAAACTTTGTCAAGCCCCCTGCACTGGCTGCCAACATAAATGTTCAGTACCCTGAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000413987.1 |
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| CDS GCA 90 bp | GGATACAACCTCCCGTTGCTACCATCGATTTTTCCTCCACTACACTaGAGGAAGCTAAAGAATCGGTCTAACTCATCTTGCACTCAACCC | + |
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Preference number: 5 (lower is better) Translates to: GYNLPLLPSIFPPLH*RKLKNRSNSSCTQP Trigger: GGGTTGAGTGCAAGATGAGTTAGACCGATTCTTTAGCTTCCTGCAGTGTAGTGGAGGAAAAATCGATGGTAGCAACGGGAGGTTGTATCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000413987.1 |
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| CDS CCA 90 bp | AAGACTTCAATCCAGATTCAGTGCTCTAGAAGGCTGTTTCCTGCATaGTTTGTCTCCCCAGTAATTGTCGACAGGACTCTGGGAAGCTGT | + |
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Preference number: 5 (lower is better) Translates to: KTSIQIQCSRRLFPA*FVSPVIVDRTLGSC Trigger: ACAGCTTCCCAGAGTCCTGTCGACAATTACTGGGGAGACAAACCATGCAGGAAACAGCCTTCTAGAGCACTGAATCTGGATTGAAGTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS TCA 90 bp | AAAATACGAGAAAGCATAATTACGAAACGCAATGCTTCCAAATTATaGAAATCTTCGGCCTGGCGTGGCGGACCACAAGGTCAGGCGTTG | + |
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Preference number: 5 (lower is better) Translates to: KIRESIITKRNASKL*KSSAWRGGPQGQAL Trigger: CAACGCCTGACCTTGTGGTCCGCCACGCCAGGCCGAAGATTTTCATAATTTGGAAGCATTGCGTTTCGTAATTATGCTTTCTCGTATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS GCA 90 bp | TACGGTCCTATTGGTCAGGACCTAATATCCATTTTCCCAATAAACTaGCAATATAAAGTGAACCCAAGGGGGACCCACCTGAGACTAGGT | + |
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Preference number: 5 (lower is better) Translates to: YGPIGQDLISIFPIN*QYKVNPRGTHLRLG Trigger: ACCTAGTCTCAGGTGGGTCCCCCTTGGGTTCACTTTATATTGGCAGTTTATTGGGAAAATGGATATTAGGTCCTGACCAATAGGACCGTA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000413987.1 |
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| CDS GCA 90 bp | GACTCATCTGGCTTCTTCCTGAGCAGGGAATTTGATGCTTGTTTCTaGAGAGGTGCCACTTCTAGTTGTGGACTTGGACAATTAGTCTTT | + |
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Preference number: 5 (lower is better) Translates to: DSSGFFLSREFDACF*RGATSSCGLGQLVF Trigger: AAAGACTAATTGTCCAAGTCCACAACTAGAAGTGGCACCTCTGCAGAAACAAGCATCAAATTCCCTGCTCAGGAAGAAGCCAGATGAGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413987.1 |
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| CDS TCA 90 bp | GCTATCATGCTAGTTTCCTTCAACAGTACCATTCAGATTCTTGGCTaGTGTCACCACAGCCACCTCCACAAAAATGAACCACAAACATGC | + |
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Preference number: 5 (lower is better) Translates to: AIMLVSFNSTIQILG*CHHSHLHKNEPQTC Trigger: GCATGTTTGTGGTTCATTTTTGTGGAGGTGGCTGTGGTGACATCAGCCAAGAATCTGAATGGTACTGTTGAAGGAAACTAGCATGATAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000413987.1 |
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| CDS TCA 90 bp | ATAAAACTGTGTGCAATTATATTGAGAACGACAATGTGCCTACTATaGGGCAGTAAGATAAACAGTGGGGGTGGCGGTGCACCTTCAGAG | + |
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Preference number: 5 (lower is better) Translates to: IKLCAIILRTTMCLL*GSKINSGGGGAPSE Trigger: CTCTGAAGGTGCACCGCCACCCCCACTGTTTATCTTACTGCCTCATAGTAGGCACATTGTCGTTCTCAATATAATTGCACACAGTTTTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS GCA 72 bp | GCACCTTCAGAGGCTCGCTGGGTCGGGCGGCAGCCCTaGGGGTCCCGAGGTCTCCATGGCCCACTTCTGGCC | + |
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Preference number: 6 (lower is better) Translates to: APSEARWVGRQP*GSRGLHGPLLA Trigger: GGCCAGAAGTGGGCCATGGAGACCTCGGGACCCGCAGGGCTGCCGCCCGACCCAGCGAGCCTCTGAAGGTGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS CCA 72 bp | GGTCGGGCGGCAGCCCTGCGGGTCCCGAGGTCTCCATaGCCCACTTCTGGCCCAGGCCCGTCTAACGCGTAC | + |
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Preference number: 6 (lower is better) Translates to: GRAAALRVPRSP*PTSGPGPSNAY Trigger: GTACGCGTTAGACGGGCCTGGGCCAGAAGTGGGCCATGGAGACCTCGGGACCCGCAGGGCTGCCGCCCGACC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS GCA 72 bp | TCAGTACAACCTCCATCTCCCGGGTTCCAGCAATTCTaGCTCAGCCTCCCACAGGTGCACACCACCATGCCC | + |
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Preference number: 6 (lower is better) Translates to: SVQPPSPGFQQF*LSLPQVHTTMP Trigger: GGGCATGGTGGTGTGCACCTGTGGGAGGCTGAGGCAGAATTGCTGGAACCCGGGAGATGGAGGTTGTACTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413987.1 |
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| CDS TCA 72 bp | GAGGCCAAGGCAGGAGAATCACTTAGCATAATCACTTaGACCCGGGAGGCAGAGGCAATGGAGTGCGCCACT | + |
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Preference number: 6 (lower is better) Translates to: EAKAGESLSIIT*TREAEAMECAT Trigger: AGTGGCGCACTCCATTGCCTCTGCCTCCCGGGTTCAAGTGATTATGCTAAGTGATTCTCCTGCCTTGGCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS CAA 72 bp | CAGGCGCAGACACGAGGCCCAGCTTTATTTCCAACGTaGTGGAAAGGGACTTGTACATCATGGGGCAGAGCC | + |
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Preference number: 6 (lower is better) Translates to: QAQTRGPALFPT*WKGTCTSWGRA Trigger: GGCTCTGCCCCATGATGTACAAGTCCCTTTCCACAACGTTGGAAATAAAGCTGGGCCTCGTGTCTGCGCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS CCA 72 bp | AGGGGCCTCATGCTATCGCCTGGGGTTGGAGTACAGTaGCACTGGAGTATAGGTTTGAGTATAGGTCACTCC | + |
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Preference number: 6 (lower is better) Translates to: RGLMLSPGVGVQ*HWSIGLSIGHS Trigger: GGAGTGACCTATACTCAAACCTATACTCCAGTGCCACTGTACTCCAACCCCAGGCGATAGCATGAGGCCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS CAA 72 bp | CTTCTGGCCCAGGCCCGTCTAACGCGTACTTTAGAGTaGGGACCGATGCCGCCTAAGACACCCATATATAGT | + |
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Preference number: 6 (lower is better) Translates to: LLAQARLTRTLE*GPMPPKTPIYS Trigger: ACTATATATGGGTGTCTTAGGCGGCATCGGTCCCAACTCTAAAGTACGCGTTAGACGGGCCTGGGCCAGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS CAA 72 bp | CCTGGGGTTGGAGTACAGTGGCACTGGAGTATAGGTTaGAGTATAGGTCACTCCTGGGCTCCAGCGATTCTC | + |
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Preference number: 6 (lower is better) Translates to: PGVGVQWHWSIG*SIGHSWAPAIL Trigger: GAGAATCGCTGGAGCCCAGGAGTGACCTATACTCAAACCTATACTCCAGTGCCACTGTACTCCAACCCCAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS CAA 90 bp | ATGCTATCGCCTGGGGTTGGAGTACAGTGGCACTGGAGTATAGGTTaGAGTATAGGTCACTCCTGGGCTCCAGCGATTCTCCTTCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: MLSPGVGVQWHWSIG*SIGHSWAPAILLPP Trigger: TGGAGGAAGGAGAATCGCTGGAGCCCAGGAGTGACCTATACTCAAACCTATACTCCAGTGCCACTGTACTCCAACCCCAGGCGATAGCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS CCA 72 bp | CTCATGCTATCGCCTGGGGTTGGAGTACAGTGGCACTaGAGTATAGGTTTGAGTATAGGTCACTCCTGGGCT | + |
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Preference number: 6 (lower is better) Translates to: LMLSPGVGVQWH*SIGLSIGHSWA Trigger: AGCCCAGGAGTGACCTATACTCAAACCTATACTCCAGTGCCACTGTACTCCAACCCCAGGCGATAGCATGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS CAA 72 bp | AGGCCCAGCTTTATTTCCAACGTTGTGGAAAGGGACTaGTACATCATGGGGCAGAGCCCTATGCTCCCCTAC | + |
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Preference number: 6 (lower is better) Translates to: RPSFISNVVERD*YIMGQSPMLPY Trigger: GTAGGGGAGCATAGGGCTCTGCCCCATGATGTACAAGTCCCTTTCCACAACGTTGGAAATAAAGCTGGGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS CCA 72 bp | TCAGGTGAGATCTATGTAGTTACAGCAGGACACGGATaGGACTGGGCATACAGACGAATGGGGCTGACTCAT | + |
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Preference number: 6 (lower is better) Translates to: SGEIYVVTAGHG*DWAYRRMGLTH Trigger: ATGAGTCAGCCCCATTCGTCTGTATGCCCAGTCCCATCCGTGTCCTGCTGTAACTACATAGATCTCACCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000413987.1 |
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| CDS CCA 72 bp | AGCCCGGGGAGAGTGACCTCCCGGGTGTATCCACGTTaGACAATCAGTGTAACGCATAAATTTACAGAATCC | + |
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Preference number: 6 (lower is better) Translates to: SPGRVTSRVYPR*TISVTHKFTES Trigger: GGATTCTGTAAATTTATGCGTTACACTGATTGTCCAACGTGGATACACCCGGGAGGTCACTCTCCCCGGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS CAA 90 bp | CATGGCCCACTTCTGGCCCAGGCCCGTCTAACGCGTACTTTAGAGTaGGGACCGATGCCGCCTAAGACACCCATATATAGTTTTAAATTA | + |
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Preference number: 6 (lower is better) Translates to: HGPLLAQARLTRTLE*GPMPPKTPIYSFKL Trigger: TAATTTAAAACTATATATGGGTGTCTTAGGCGGCATCGGTCCCAACTCTAAAGTACGCGTTAGACGGGCCTGGGCCAGAAGTGGGCCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS CCA 72 bp | GCTTCCATTCTCAAACCAACCCTGACCTCAACACCTTaGCAAGCAAGCTCTACAGTCCACCAAACTCCAATC | + |
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Preference number: 6 (lower is better) Translates to: ASILKPTLTSTP*QASSTVHQTPI Trigger: GATTGGAGTTTGGTGGACTGTAGAGCTTGCTTGCCAAGGTGTTGAGGTCAGGGTTGGTTTGAGAATGGAAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413987.1 |
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| CDS CCA 72 bp | CTAAACTTTTTCAACGAGGGGCCTCATGCTATCGCCTaGGGTTGGAGTACAGTGGCACTGGAGTATAGGTTT | + |
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Preference number: 6 (lower is better) Translates to: LNFFNEGPHAIA*GWSTVALEYRF Trigger: AAACCTATACTCCAGTGCCACTGTACTCCAACCCCAGGCGATAGCATGAGGCCCCTCGTTGAAAAAGTTTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS CAA 90 bp | CTAGTAACTAGCTTCCATTCTCAAACCAACCCTGACCTCAACACCTaGGCAAGCAAGCTCTACAGTCCACCAAACTCCAATCTCACCCAC | + |
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Preference number: 6 (lower is better) Translates to: LVTSFHSQTNPDLNT*ASKLYSPPNSNLTH Trigger: GTGGGTGAGATTGGAGTTTGGTGGACTGTAGAGCTTGCTTGCCAAGGTGTTGAGGTCAGGGTTGGTTTGAGAATGGAAGCTAGTTACTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413987.1 |
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| CDS GCA 72 bp | TCCTTCAGGGTACTGAACATTTATGTTGGCAGCCAGTaGAGGGGGCTTGACAAAGTTTCCATTGTGACTCAC | + |
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Preference number: 6 (lower is better) Translates to: SFRVLNIYVGSQ*RGLDKVSIVTH Trigger: GTGAGTCACAATGGAAACTTTGTCAAGCCCCCTGCACTGGCTGCCAACATAAATGTTCAGTACCCTGAAGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000413987.1 |
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| CDS GCA 72 bp | GGCTTCTTCCTGAGCAGGGAATTTGATGCTTGTTTCTaGAGAGGTGCCACTTCTAGTTGTGGACTTGGACAA | + |
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Preference number: 6 (lower is better) Translates to: GFFLSREFDACF*RGATSSCGLGQ Trigger: TTGTCCAAGTCCACAACTAGAAGTGGCACCTCTGCAGAAACAAGCATCAAATTCCCTGCTCAGGAAGAAGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413987.1 |
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| CDS CAA 72 bp | AGCTTCCATTCTCAAACCAACCCTGACCTCAACACCTaGGCAAGCAAGCTCTACAGTCCACCAAACTCCAAT | + |
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Preference number: 6 (lower is better) Translates to: SFHSQTNPDLNT*ASKLYSPPNSN Trigger: ATTGGAGTTTGGTGGACTGTAGAGCTTGCTTGCCAAGGTGTTGAGGTCAGGGTTGGTTTGAGAATGGAAGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413987.1 |
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| CDS GCA 72 bp | CTCCCGTTGCTACCATCGATTTTTCCTCCACTACACTaGAGGAAGCTAAAGAATCGGTCTAACTCATCTTGC | + |
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Preference number: 6 (lower is better) Translates to: LPLLPSIFPPLH*RKLKNRSNSSC Trigger: GCAAGATGAGTTAGACCGATTCTTTAGCTTCCTGCAGTGTAGTGGAGGAAAAATCGATGGTAGCAACGGGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000413987.1 |
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| CDS TCA 72 bp | TGTGCAATTATATTGAGAACGACAATGTGCCTACTATaGGGCAGTAAGATAAACAGTGGGGGTGGCGGTGCA | + |
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Preference number: 6 (lower is better) Translates to: CAIILRTTMCLL*GSKINSGGGGA Trigger: TGCACCGCCACCCCCACTGTTTATCTTACTGCCTCATAGTAGGCACATTGTCGTTCTCAATATAATTGCACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS TCA 72 bp | GAAAGCATAATTACGAAACGCAATGCTTCCAAATTATaGAAATCTTCGGCCTGGCGTGGCGGACCACAAGGT | + |
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Preference number: 6 (lower is better) Translates to: ESIITKRNASKL*KSSAWRGGPQG Trigger: ACCTTGTGGTCCGCCACGCCAGGCCGAAGATTTTCATAATTTGGAAGCATTGCGTTTCGTAATTATGCTTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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| CDS GCA 72 bp | CTCTCAAAAGGAGGCATGAAATGCACCTCAATCTTTTaGTCCAAGTCTGCCAAAGATTGTCAAACCCTCCCT | + |
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Preference number: 6 (lower is better) Translates to: LSKGGMKCTSIF*SKSAKDCQTLP Trigger: AGGGAGGGTTTGACAATCTTTGGCAGACTTGGAGCAAAAGATTGAGGTGCATTTCATGCCTCCTTTTGAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000413987.1 ENST00000437681.1 |
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| CDS CAA 72 bp | ACTCTCAAAAGGAGGCATGAAATGCACCTCAATCTTTaGCTCCAAGTCTGCCAAAGATTGTCAAACCCTCCC | + |
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Preference number: 6 (lower is better) Translates to: TLKRRHEMHLNL*LQVCQRLSNPP Trigger: GGGAGGGTTTGACAATCTTTGGCAGACTTGGAGCAAAAGATTGAGGTGCATTTCATGCCTCCTTTTGAGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000413987.1 ENST00000437681.1 |
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| CDS TCA 72 bp | CTAGTTTCCTTCAACAGTACCATTCAGATTCTTGGCTaGTGTCACCACAGCCACCTCCACAAAAATGAACCA | + |
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Preference number: 6 (lower is better) Translates to: LVSFNSTIQILG*CHHSHLHKNEP Trigger: TGGTTCATTTTTGTGGAGGTGGCTGTGGTGACATCAGCCAAGAATCTGAATGGTACTGTTGAAGGAAACTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000413987.1 |
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| CDS GCA 72 bp | ATTGGTCAGGACCTAATATCCATTTTCCCAATAAACTaGCAATATAAAGTGAACCCAAGGGGGACCCACCTG | + |
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Preference number: 6 (lower is better) Translates to: IGQDLISIFPIN*QYKVNPRGTHL Trigger: CAGGTGGGTCCCCCTTGGGTTCACTTTATATTGGCAGTTTATTGGGAAAATGGATATTAGGTCCTGACCAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000413987.1 |
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| CDS CCA 72 bp | ACTCATCTTGCACTCAACCCAGACTTACGGTCCTATTaGTCAGGACCTAATATCCATTTTCCCAATAAACTG | + |
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Preference number: 6 (lower is better) Translates to: THLALNPDLRSY*SGPNIHFPNKL Trigger: CAGTTTATTGGGAAAATGGATATTAGGTCCTGACCAATAGGACCGTAAGTCTGGGTTGAGTGCAAGATGAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000413987.1 |
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| CDS GCA 72 bp | CACAAAAATACGAGAAAGCATAATTACGAAACGCAATaGTTCCAAATTATGAAAATCTTCGGCCTGGCGTGG | + |
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Preference number: 6 (lower is better) Translates to: HKNTRKHNYETQ*FQIMKIFGLAW Trigger: CCACGCCAGGCCGAAGATTTTCATAATTTGGAAGCATTGCGTTTCGTAATTATGCTTTCTCGTATTTTTGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000437681.1 |
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