Pregenerated sensors for SNHG21 (Homo sapiens)

Ensembl gene IDs: ENSG00000250988

Ensembl transcript IDs: ENST00000544685.2, ENST00000558174.5, ENST00000558687.1, ENST00000559366.1, ENST00000561107.5

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TATACCTCAGCTCCGTGGGCTACGAAGCTCGTTCTTCAAATGAGGTaGAGAAATGTAAGCGCGATGAATGAGGCCCAAGTCGCTGGTGGC	+
Preference number: 5 (lower is better) Translates to: YTSAPWATKLVLQMR*RNVSAMNEAQVAGG Trigger: GCCACCAGCGACTTGGGCCTCATTCATCGCGCTTACATTTCTCCACCTCATTTGAAGAACGAGCTTCGTAGCCCACGGAGCTGAGGTATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000544685.2 ENST00000558174.5 ENST00000559366.1 ENST00000561107.5
CDS CCA 72 bp	GCCTACCAGGACGCTGCTGTCACTGGCTCTGCTCGGTaGCCAGAGACAGTACTCACTCCATGCGGCCACCCC	+
Preference number: 6 (lower is better) Translates to: AYQDAAVTGSAR*PETVLTPCGHP Trigger: GGGGTGGCCGCATGGAGTGAGTACTGTCTCTGGCCACCGAGCAGAGCCAGTGACAGCAGCGTCCTGGTAGGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000544685.2 ENST00000558174.5 ENST00000558687.1 ENST00000559366.1 ENST00000561107.5
CDS CCA 72 bp	GCTCCGTGGGCTACGAAGCTCGTTCTTCAAATGAGGTaGAGAAATGTAAGCGCGATGAATGAGGCCCAAGTC	+
Preference number: 6 (lower is better) Translates to: APWATKLVLQMR*RNVSAMNEAQV Trigger: GACTTGGGCCTCATTCATCGCGCTTACATTTCTCCACCTCATTTGAAGAACGAGCTTCGTAGCCCACGGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000544685.2 ENST00000558174.5 ENST00000559366.1 ENST00000561107.5
CDS TCA 72 bp	CAACCTGCTGATAAGTCTGTATCACTTTATAACTCCTaGGAAAGTCATTCACATAAGCTGTGGCCTCCCCAC	+
Preference number: 6 (lower is better) Translates to: QPADKSVSLYNS*ESHSHKLWPPH Trigger: GTGGGGAGGCCACAGCTTATGTGAATGACTTTCTCAGGAGTTATAAAGTGATACAGACTTATCAGCAGGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000559366.1 ENST00000561107.5
CDS CAA 90 bp	AAGTCTCTTTTAGATTACTTCAGTGGCTATACTGCAATCATTGACTaGTGTCTGCTCCACTTGACTATAAGCAAATTGAAGGCAGGGTTT	+
Preference number: 6 (lower is better) Translates to: KSLLDYFSGYTAIID*CLLHLTISKLKAGF Trigger: AAACCCTGCCTTCAATTTGCTTATAGTCAAGTGGAGCAGACACAAGTCAATGATTGCAGTATAGCCACTGAAGTAATCTAAAAGAGACTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000558174.5
CDS CAA 90 bp	AGAACAGTACTCTGGAGAAAGGTAAAAGATACTCAACACTGTTTTTaGTACCATTTACGATTTATAAATCAGCCACAGAGTCCTAGGCAC	+
Preference number: 6 (lower is better) Translates to: RTVLWRKVKDTQHCF*YHLRFINQPQSPRH Trigger: GTGCCTAGGACTCTGTGGCTGATTTATAAATCGTAAATGGTACAAAAAACAGTGTTGAGTATCTTTTACCTTTCTCCAGAGTACTGTTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000558687.1
CDS CAA 72 bp	TTAGATTACTTCAGTGGCTATACTGCAATCATTGACTaGTGTCTGCTCCACTTGACTATAAGCAAATTGAAG	+
Preference number: 6 (lower is better) Translates to: LDYFSGYTAIID*CLLHLTISKLK Trigger: CTTCAATTTGCTTATAGTCAAGTGGAGCAGACACAAGTCAATGATTGCAGTATAGCCACTGAAGTAATCTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000544685.2 ENST00000558174.5 ENST00000558687.1 ENST00000559366.1 ENST00000561107.5

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