Pregenerated sensors for SNHG20 (Homo sapiens)
Ensembl gene IDs: ENSG00000234912Ensembl transcript IDs: ENST00000366365.3, ENST00000434411.6, ENST00000561633.5, ENST00000564414.5, ENST00000564509.5, ENST00000565256.1, ENST00000568056.5, ENST00000568363.5, ENST00000569632.1, ENST00000647734.1, ENST00000647904.1, ENST00000648740.1, ENST00000648926.1, ENST00000648984.1, ENST00000649047.1, ENST00000649712.1, ENST00000650557.1
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CGCAGGCTAGGGCCGATGGCGGCGGAACTGTGGTCAGGGCTGCCCTaGGTCATCCTGCGGACTGCGAGTCGGCGACCACCAGGAGGCGAG | + |
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Preference number: 5 (lower is better) Translates to: RRLGPMAAELWSGLP*VILRTASRRPPGGE Trigger: CTCGCCTCCTGGTGGTCGCCGACTCGCAGTCCGCAGGATGACTCAGGGCAGCCCTGACCACAGTTCCGCCGCCATCGGCCCTAGCCTGCG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000434411.6 ENST00000647734.1 ENST00000647904.1 ENST00000648984.1 ENST00000649712.1 ENST00000650557.1 |
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| CDS GCA 90 bp | GGCGGCGGAACTGTGGTCAGGGCTGCCCTGAGTCATCCTGCGGACTaGGAGTCGGCGACCACCAGGAGGCGAGAGCGGGTTTCCCCTCCA | + |
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Preference number: 5 (lower is better) Translates to: GGGTVVRAALSHPAD*ESATTRRRERVSPP Trigger: TGGAGGGGAAACCCGCTCTCGCCTCCTGGTGGTCGCCGACTCGCAGTCCGCAGGATGACTCAGGGCAGCCCTGACCACAGTTCCGCCGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000434411.6 ENST00000647734.1 ENST00000647904.1 ENST00000649712.1 ENST00000650557.1 |
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| CDS GCA 90 bp | GGCCGATGGCGGCGGAACTGTGGTCAGGGCTGCCCTGAGTCATCCTaGGGACTGCGAGTCGGCGACCACCAGGAGGCGAGAGCGGGTTTC | + |
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Preference number: 5 (lower is better) Translates to: GRWRRNCGQGCPESS*GLRVGDHQEARAGF Trigger: GAAACCCGCTCTCGCCTCCTGGTGGTCGCCGACTCGCAGTCCGCAGGATGACTCAGGGCAGCCCTGACCACAGTTCCGCCGCCATCGGCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000434411.6 ENST00000647734.1 ENST00000647904.1 ENST00000648984.1 ENST00000649712.1 ENST00000650557.1 |
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| CDS GCA 90 bp | GTGCGGACCAAGTTCTCTTTTGTCGCCTCCCGTCCAAGCCCTACTTaGGATGGGAGAAGCCGTCCCCGAAATCCCGGGCGCCGTGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: VRTKFSFVASRPSPT*DGRSRPRNPGRRGG Trigger: CCCTCCACGGCGCCCGGGATTTCGGGGACGGCTTCTCCCATCGCAAGTAGGGCTTGGACGGGAGGCGACAAAAGAGAACTTGGTCCGCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000564509.5 ENST00000647734.1 |
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| CDS CCA 90 bp | GGAGGTACAAACAGGGAGGGACCTGCCCGAGGTCCAGCAGGCTGGTaGGGAGCTGGGATCAGAAACCCCACGTGGACAACGTGGTGGCCT | + |
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Preference number: 5 (lower is better) Translates to: GGTNREGPARGPAGW*GAGIRNPTWTTWWP Trigger: AGGCCACCACGTTGTCCACGTGGGGTTTCTGATCCCAGCTCCCCACCAGCCTGCTGGACCTCGGGCAGGTCCCTCCCTGTTTGTACCTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000434411.6 ENST00000568363.5 ENST00000647734.1 ENST00000649047.1 ENST00000649712.1 |
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| CDS CCA 90 bp | GCAGGCTGGTGGGGAGCTGGGATCAGAAACCCCACGTGGACAACGTaGTGGCCTCCGCCTCTAAGTGCTAAGGAGGCACTTGCTGGGTCG | + |
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Preference number: 5 (lower is better) Translates to: AGWWGAGIRNPTWTT*WPPPLSAKEALAGS Trigger: CGACCCAGCAAGTGCCTCCTTAGCACTTAGAGGCGGAGGCCACCACGTTGTCCACGTGGGGTTTCTGATCCCAGCTCCCCACCAGCCTGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000434411.6 ENST00000568363.5 ENST00000647734.1 ENST00000649047.1 ENST00000649712.1 |
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| CDS CCA 90 bp | GGCTGGTGGGGAGCTGGGATCAGAAACCCCACGTGGACAACGTGGTaGCCTCCGCCTCTAAGTGCTAAGGAGGCACTTGCTGGGTCGTTT | + |
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Preference number: 5 (lower is better) Translates to: GWWGAGIRNPTWTTW*PPPLSAKEALAGSF Trigger: AAACGACCCAGCAAGTGCCTCCTTAGCACTTAGAGGCGGAGGCCACCACGTTGTCCACGTGGGGTTTCTGATCCCAGCTCCCCACCAGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000434411.6 ENST00000568363.5 ENST00000647734.1 ENST00000649047.1 ENST00000649712.1 |
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| CDS CCA 90 bp | CTGCTGGCTACGGGGCCTCCCTACAGCTCCTCATTCCAATTTCGGTaGCTGTGTGCGGACCAAGTTCTCTTTTGTCGCCTCCCGTCCAAG | + |
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Preference number: 5 (lower is better) Translates to: LLATGPPYSSSFQFR*LCADQVLFCRLPSK Trigger: CTTGGACGGGAGGCGACAAAAGAGAACTTGGTCCGCACACAGCCACCGAAATTGGAATGAGGAGCTGTAGGGAGGCCCCGTAGCCAGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000564509.5 ENST00000647734.1 |
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| CDS GCA 90 bp | TACGGGGCCTCCCTACAGCTCCTCATTCCAATTTCGGTGGCTGTGTaGGGACCAAGTTCTCTTTTGTCGCCTCCCGTCCAAGCCCTACTT | + |
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Preference number: 5 (lower is better) Translates to: YGASLQLLIPISVAV*GPSSLLSPPVQALL Trigger: AAGTAGGGCTTGGACGGGAGGCGACAAAAGAGAACTTGGTCCGCACACAGCCACCGAAATTGGAATGAGGAGCTGTAGGGAGGCCCCGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000564509.5 ENST00000647734.1 |
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| CDS GCA 90 bp | CAGGAGCCTTTCCCCAGACCGTCTGACCTGAACACTTTGTCACCATaGTTGACATACCTGGATGCCCTGCTGAGGTCACTTCGAATGCTC | + |
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Preference number: 5 (lower is better) Translates to: QEPFPRPSDLNTLSP*LTYLDALLRSLRML Trigger: GAGCATTCGAAGTGACCTCAGCAGGGCATCCAGGTATGTCAAGCATGGTGACAAAGTGTTCAGGTCAGACGGTCTGGGGAAAGGCTCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000366365.3 ENST00000648926.1 |
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| CDS TCA 90 bp | GGCTACGTGAAGATGCAGGCCGTCCTGGCCTATTGGGATACCCCCTaGAAAGCCTATTGCTCCAAAAGACCTGGTAGATTCCCGACAGTT | + |
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Preference number: 5 (lower is better) Translates to: GYVKMQAVLAYWDTP*KAYCSKRPGRFPTV Trigger: AACTGTCGGGAATCTACCAGGTCTTTTGGAGCAATAGGCTTTTCAGGGGGTATCCCAATAGGCCAGGACGGCCTGCATCTTCACGTAGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS TCA 90 bp | AGCTCCATGAATGAGGTGGGCACTAGGAGAGGACAGATCCAGGGCTaGGGTCCTTGTCACAGAGAAAGACAGTCTCCAGCTTCATCACTG | + |
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Preference number: 5 (lower is better) Translates to: SSMNEVGTRRGQIQG*GPCHRERQSPASSL Trigger: CAGTGATGAAGCTGGAGACTGTCTTTCTCTGTGACAAGGACCTCAGCCCTGGATCTGTCCTCTCCTAGTGCCCACCTCATTCATGGAGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650557.1 |
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| CDS CCA 90 bp | TCACTGGTACACGCCCACCAGCGCCATGACAGTTTACAAATGCCGTaGCAACGTCAGGAAGTTACCCTACATGGTCTAAAAAGGGGAGGC | + |
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Preference number: 5 (lower is better) Translates to: SLVHAHQRHDSLQMP*QRQEVTLHGLKRGG Trigger: GCCTCCCCTTTTTAGACCATGTAGGGTAACTTCCTGACGTTGCCACGGCATTTGTAAACTGTCATGGCGCTGGTGGGCGTGTACCAGTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS CCA 90 bp | ACGGCCAAAATCCTCCAAAACCAAGATGGCTATGAGAGTGACCTCTaGTTGCCCTCACTGGTACACGCCCACCAGCGCCATGACAGTTTA | + |
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Preference number: 5 (lower is better) Translates to: TAKILQNQDGYESDL*LPSLVHAHQRHDSL Trigger: TAAACTGTCATGGCGCTGGTGGGCGTGTACCAGTGAGGGCAACCAGAGGTCACTCTCATAGCCATCTTGGTTTTGGAGGATTTTGGCCGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS CCA 90 bp | CACACTCAGACACATGGCCGGCGGGCACAGGAACCACAGAGTATGTaGTCACCTTGGCGTGTATCTATTTATAGCCATACACAACAGGGT | + |
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Preference number: 5 (lower is better) Translates to: HTQTHGRRAQEPQSM*SPWRVSIYSHTQQG Trigger: ACCCTGTTGTGTATGGCTATAAATAGATACACGCCAAGGTGACCACATACTCTGTGGTTCCTGTGCCCGCCGGCCATGTGTCTGAGTGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000434411.6 ENST00000568363.5 ENST00000647734.1 ENST00000649047.1 ENST00000649712.1 |
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| CDS CCA 90 bp | GGAGCGAGGGAATCAGAAGGAACATCCCATTTCTTGAAAGCCCGCTaGGTTCCTGGAGCCGTGAAAGCATTATCTCTCTACTCCTCATGC | + |
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Preference number: 5 (lower is better) Translates to: GARESEGTSHFLKAR*VPGAVKALSLYSSC Trigger: GCATGAGGAGTAGAGAGATAATGCTTTCACGGCTCCAGGAACCCAGCGGGCTTTCAAGAAATGGGATGTTCCTTCTGATTCCCTCGCTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS TCA 90 bp | GAGGTCACACCACCGCACTCCAGCCCAAACCCCACAGCCCTCTCCTaGGTGCTTTATAGGATTTGCTCATTTAACCCTCAAATGTACCAA | + |
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Preference number: 5 (lower is better) Translates to: EVTPPHSSPNPTALS*VLYRICSFNPQMYQ Trigger: TTGGTACATTTGAGGGTTAAATGAGCAAATCCTATAAAGCACTCAGGAGAGGGCTGTGGGGTTTGGGCTGGAGTGCGGTGGTGTGACCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649712.1 |
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| CDS TCA 90 bp | CTGTCCCAGAACACTTCCAAATACTGCAGGACATGTGGCTCAACATaGGCCAAAAAGACGGTGTCCCCATGCATAGACCTGGGATCCTCT | + |
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Preference number: 5 (lower is better) Translates to: LSQNTSKYCRTCGST*AKKTVSPCIDLGSS Trigger: AGAGGATCCCAGGTCTATGCATGGGGACACCGTCTTTTTGGCTCATGTTGAGCCACATGTCCTGCAGTATTTGGAAGTGTTCTGGGACAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000650557.1 |
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| CDS CCA 90 bp | ACACATGGCCGGCGGGCACAGGAACCACAGAGTATGTGGTCACCTTaGCGTGTATCTATTTATAGCCATACACAACAGGGTCTTAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: THGRRAQEPQSMWSP*RVSIYSHTQQGLKQ Trigger: CTGCTTAAGACCCTGTTGTGTATGGCTATAAATAGATACACGCCAAGGTGACCACATACTCTGTGGTTCCTGTGCCCGCCGGCCATGTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000434411.6 ENST00000568363.5 ENST00000647734.1 ENST00000649047.1 ENST00000649712.1 |
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| CDS TCA 90 bp | GGTCCTTGTCACAGAGAAAGACAGTCTCCAGCTTCATCACTGCAGTaGAGGGCACGCGATCTTTATGTGAACAAAGTCTGTCCCAGAACA | + |
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Preference number: 5 (lower is better) Translates to: GPCHRERQSPASSLQ*RARDLYVNKVCPRT Trigger: TGTTCTGGGACAGACTTTGTTCACATAAAGATCGCGTGCCCTTCACTGCAGTGATGAAGCTGGAGACTGTCTTTCTCTGTGACAAGGACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650557.1 |
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| CDS TCA 90 bp | AGTCTCCAGCTTCATCACTGCAGTGAAGGGCACGCGATCTTTATGTaGACAAAGTCTGTCCCAGAACACTTCCAAATACTGCAGGACATG | + |
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Preference number: 5 (lower is better) Translates to: SLQLHHCSEGHAIFM*TKSVPEHFQILQDM Trigger: CATGTCCTGCAGTATTTGGAAGTGTTCTGGGACAGACTTTGTTCACATAAAGATCGCGTGCCCTTCACTGCAGTGATGAAGCTGGAGACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650557.1 |
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| CDS GCA 90 bp | AACAGGAATCTTGCTCTGAGTCTAATCCCACAACCAAGGAAGAATTaGTGGACCTTGTCTCAGAGGCGTTTGAACCAGAGCAACTCCATC | + |
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Preference number: 5 (lower is better) Translates to: NRNLALSLIPQPRKN*WTLSQRRLNQSNSI Trigger: GATGGAGTTGCTCTGGTTCAAACGCCTCTGAGACAAGGTCCAGCAATTCTTCCTTGGTTGTGGGATTAGACTCAGAGCAAGATTCCTGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS CCA 90 bp | AGGAATCTTGCTCTGAGTCTAATCCCACAACCAAGGAAGAATTGCTaGACCTTGTCTCAGAGGCGTTTGAACCAGAGCAACTCCATCTTG | + |
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Preference number: 5 (lower is better) Translates to: RNLALSLIPQPRKNC*TLSQRRLNQSNSIL Trigger: CAAGATGGAGTTGCTCTGGTTCAAACGCCTCTGAGACAAGGTCCAGCAATTCTTCCTTGGTTGTGGGATTAGACTCAGAGCAAGATTCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS TCA 90 bp | CATAACCCTCCACAGCTGACAGTCTGTGAACATGTGACCTTCCAGTaGCTTACACGGGGCTCCTTTCATTACCATTGCAATAAAAAGAAC | + |
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Preference number: 5 (lower is better) Translates to: HNPPQLTVCEHVTFQ*LTRGSFHYHCNKKN Trigger: GTTCTTTTTATTGCAATGGTAATGAAAGGAGCCCCGTGTAAGTCACTGGAAGGTCACATGTTCACAGACTGTCAGCTGTGGAGGGTTATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 7 transcripts: ENST00000561633.5 ENST00000564414.5 ENST00000564509.5 ENST00000568056.5 ENST00000569632.1 ENST00000648740.1 ENST00000650557.1 |
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| CDS GCA 90 bp | TTGCTAGGTCATACAGCTCATAAAGACCTTGCTGATCAAACAGGCTaGAGTAAAGAAGACGGCCAAAATCCTCCAAAACCAAGATGGCTA | + |
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Preference number: 5 (lower is better) Translates to: LLGHTAHKDLADQTG*SKEDGQNPPKPRWL Trigger: TAGCCATCTTGGTTTTGGAGGATTTTGGCCGTCTTCTTTACTGCAGCCTGTTTGATCAGCAAGGTCTTTATGAGCTGTATGACCTAGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS TCA 72 bp | GGGCCGATGGCGGCGGAACTGTGGTCAGGGCTGCCCTaGGTCATCCTGCGGACTGCGAGTCGGCGACCACCA | + |
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Preference number: 6 (lower is better) Translates to: GPMAAELWSGLP*VILRTASRRPP Trigger: TGGTGGTCGCCGACTCGCAGTCCGCAGGATGACTCAGGGCAGCCCTGACCACAGTTCCGCCGCCATCGGCCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000434411.6 ENST00000647734.1 ENST00000647904.1 ENST00000648984.1 ENST00000649712.1 ENST00000650557.1 |
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| CDS GCA 72 bp | CGGCGGAACTGTGGTCAGGGCTGCCCTGAGTCATCCTaGGGACTGCGAGTCGGCGACCACCAGGAGGCGAGA | + |
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Preference number: 6 (lower is better) Translates to: RRNCGQGCPESS*GLRVGDHQEAR Trigger: TCTCGCCTCCTGGTGGTCGCCGACTCGCAGTCCGCAGGATGACTCAGGGCAGCCCTGACCACAGTTCCGCCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000434411.6 ENST00000647734.1 ENST00000647904.1 ENST00000648984.1 ENST00000649712.1 ENST00000650557.1 |
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| CDS GCA 72 bp | ACTGTGGTCAGGGCTGCCCTGAGTCATCCTGCGGACTaGGAGTCGGCGACCACCAGGAGGCGAGAGCGGGTT | + |
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Preference number: 6 (lower is better) Translates to: TVVRAALSHPAD*ESATTRRRERV Trigger: AACCCGCTCTCGCCTCCTGGTGGTCGCCGACTCGCAGTCCGCAGGATGACTCAGGGCAGCCCTGACCACAGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000434411.6 ENST00000647734.1 ENST00000647904.1 ENST00000648984.1 ENST00000649712.1 ENST00000650557.1 |
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| CDS CCA 72 bp | CTCTTTTGTCGCCTCCCGTCCAAGCCCTACTTGCGATaGGAGAAGCCGTCCCCGAAATCCCGGGCGCCGTGG | + |
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Preference number: 6 (lower is better) Translates to: LFCRLPSKPYLR*EKPSPKSRAPW Trigger: CCACGGCGCCCGGGATTTCGGGGACGGCTTCTCCCATCGCAAGTAGGGCTTGGACGGGAGGCGACAAAAGAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000564509.5 ENST00000647734.1 |
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| CDS CAA 90 bp | TGTGCGGACCAAGTTCTCTTTTGTCGCCTCCCGTCCAAGCCCTACTaGCGATGGGAGAAGCCGTCCCCGAAATCCCGGGCGCCGTGGAGG | + |
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Preference number: 6 (lower is better) Translates to: CADQVLFCRLPSKPY*RWEKPSPKSRAPWR Trigger: CCTCCACGGCGCCCGGGATTTCGGGGACGGCTTCTCCCATCGCAAGTAGGGCTTGGACGGGAGGCGACAAAAGAGAACTTGGTCCGCACA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000564509.5 ENST00000647734.1 |
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| CDS CCA 72 bp | GCCAAAGCACGTGTCTCCACTTACTTCCCACTCCCCTaGGCGGAAGTAGCTCCGTCAGCAACTTCCGGCCGG | + |
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Preference number: 6 (lower is better) Translates to: AKARVSTYFPLP*AEVAPSATSGR Trigger: CCGGCCGGAAGTTGCTGACGGAGCTACTTCCGCCCAGGGGAGTGGGAAGTAAGTGGAGACACGTGCTTTGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000434411.6 ENST00000647734.1 |
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| CDS CAA 72 bp | CAAGTTCTCTTTTGTCGCCTCCCGTCCAAGCCCTACTaGCGATGGGAGAAGCCGTCCCCGAAATCCCGGGCG | + |
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Preference number: 6 (lower is better) Translates to: QVLFCRLPSKPY*RWEKPSPKSRA Trigger: CGCCCGGGATTTCGGGGACGGCTTCTCCCATCGCAAGTAGGGCTTGGACGGGAGGCGACAAAAGAGAACTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000564509.5 ENST00000647734.1 |
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| CDS GCA 72 bp | GCTAAGGAGGCACTTGCTGGGTCGTTTGAACCCACCTaGTGCTGCGCTCCCAAAACTTCCCATGGGACCAGG | + |
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Preference number: 6 (lower is better) Translates to: AKEALAGSFEPT*CCAPKTSHGTR Trigger: CCTGGTCCCATGGGAAGTTTTGGGAGCGCAGCAGCAGGTGGGTTCAAACGACCCAGCAAGTGCCTCCTTAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000434411.6 ENST00000568363.5 ENST00000647734.1 ENST00000649047.1 ENST00000649712.1 |
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| CDS CCA 72 bp | GGAGCTGGGATCAGAAACCCCACGTGGACAACGTGGTaGCCTCCGCCTCTAAGTGCTAAGGAGGCACTTGCT | + |
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Preference number: 6 (lower is better) Translates to: GAGIRNPTWTTW*PPPLSAKEALA Trigger: AGCAAGTGCCTCCTTAGCACTTAGAGGCGGAGGCCACCACGTTGTCCACGTGGGGTTTCTGATCCCAGCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000434411.6 ENST00000568363.5 ENST00000647734.1 ENST00000649047.1 ENST00000649712.1 |
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| CDS TCA 72 bp | CAGCCTGGGCCACAAGAGCGAAACTGGATGCCCTGCTaGGGTCACTTCGAATGCTCTCATCAACGAGGGGCA | + |
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Preference number: 6 (lower is better) Translates to: QPGPQERNWMPC*GHFECSHQRGA Trigger: TGCCCCTCGTTGATGAGAGCATTCGAAGTGACCTCAGCAGGGCATCCAGTTTCGCTCTTGTGGCCCAGGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000565256.1 |
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| CDS TCA 72 bp | GCAGGAAGGAGAAAGCTCAAGAGCAGAGGGGCTACGTaGAGATGCAGGCCGTCCTGGCCTATTGGGATACCC | + |
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Preference number: 6 (lower is better) Translates to: AGRRKLKSRGAT*RCRPSWPIGIP Trigger: GGGTATCCCAATAGGCCAGGACGGCCTGCATCTTCACGTAGCCCCTCTGCTCTTGAGCTTTCTCCTTCCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS CAA 90 bp | CTCCTCATTCCAATTTCGGTGGCTGTGTGCGGACCAAGTTCTCTTTaGTCGCCTCCCGTCCAAGCCCTACTTGCGATGGGAGAAGCCGTC | + |
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Preference number: 6 (lower is better) Translates to: LLIPISVAVCGPSSL*SPPVQALLAMGEAV Trigger: GACGGCTTCTCCCATCGCAAGTAGGGCTTGGACGGGAGGCGACAAAAGAGAACTTGGTCCGCACACAGCCACCGAAATTGGAATGAGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000564509.5 ENST00000647734.1 |
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| CDS CAA 90 bp | GGGGAGGGCCCTGGAGCGAGGGAATCAGAAGGAACATCCCATTTCTaGAAAGCCCGCTGGGTTCCTGGAGCCGTGAAAGCATTATCTCTC | + |
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Preference number: 6 (lower is better) Translates to: GEGPGARESEGTSHF*KARWVPGAVKALSL Trigger: GAGAGATAATGCTTTCACGGCTCCAGGAACCCAGCGGGCTTTCAAGAAATGGGATGTTCCTTCTGATTCCCTCGCTCCAGGGCCCTCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS CCA 72 bp | ACGGGGCCTCCCTACAGCTCCTCATTCCAATTTCGGTaGCTGTGTGCGGACCAAGTTCTCTTTTGTCGCCTC | + |
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Preference number: 6 (lower is better) Translates to: TGPPYSSSFQFR*LCADQVLFCRL Trigger: GAGGCGACAAAAGAGAACTTGGTCCGCACACAGCCACCGAAATTGGAATGAGGAGCTGTAGGGAGGCCCCGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000564509.5 ENST00000647734.1 |
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| CDS CAA 72 bp | CCAATTTCGGTGGCTGTGTGCGGACCAAGTTCTCTTTaGTCGCCTCCCGTCCAAGCCCTACTTGCGATGGGA | + |
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Preference number: 6 (lower is better) Translates to: PISVAVCGPSSL*SPPVQALLAMG Trigger: TCCCATCGCAAGTAGGGCTTGGACGGGAGGCGACAAAAGAGAACTTGGTCCGCACACAGCCACCGAAATTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000564509.5 ENST00000647734.1 |
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| CDS CAA 72 bp | CTCCAAAACCAAGATGGCTATGAGAGTGACCTCTGGTaGCCCTCACTGGTACACGCCCACCAGCGCCATGAC | + |
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Preference number: 6 (lower is better) Translates to: LQNQDGYESDLW*PSLVHAHQRHD Trigger: GTCATGGCGCTGGTGGGCGTGTACCAGTGAGGGCAACCAGAGGTCACTCTCATAGCCATCTTGGTTTTGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS GCA 72 bp | TCCAAAACCAAGATGGCTATGAGAGTGACCTCTGGTTaGCCTCACTGGTACACGCCCACCAGCGCCATGACA | + |
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Preference number: 6 (lower is better) Translates to: SKTKMAMRVTSG*PHWYTPTSAMT Trigger: TGTCATGGCGCTGGTGGGCGTGTACCAGTGAGGGCAACCAGAGGTCACTCTCATAGCCATCTTGGTTTTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS CCA 72 bp | ATCCTCCAAAACCAAGATGGCTATGAGAGTGACCTCTaGTTGCCCTCACTGGTACACGCCCACCAGCGCCAT | + |
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Preference number: 6 (lower is better) Translates to: ILQNQDGYESDL*LPSLVHAHQRH Trigger: ATGGCGCTGGTGGGCGTGTACCAGTGAGGGCAACCAGAGGTCACTCTCATAGCCATCTTGGTTTTGGAGGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS CAA 72 bp | CAGGAGCCTTTCCCCAGACCGTCTGACCTGAACACTTaGTCACCATGCTTGACATACCTGGATGCCCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: QEPFPRPSDLNT*SPCLTYLDALL Trigger: CAGCAGGGCATCCAGGTATGTCAAGCATGGTGACAAAGTGTTCAGGTCAGACGGTCTGGGGAAAGGCTCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000366365.3 ENST00000648926.1 |
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| CDS CAA 72 bp | CCTGGAGCGAGGGAATCAGAAGGAACATCCCATTTCTaGAAAGCCCGCTGGGTTCCTGGAGCCGTGAAAGCA | + |
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Preference number: 6 (lower is better) Translates to: PGARESEGTSHF*KARWVPGAVKA Trigger: TGCTTTCACGGCTCCAGGAACCCAGCGGGCTTTCAAGAAATGGGATGTTCCTTCTGATTCCCTCGCTCCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS GCA 72 bp | TCCCTACAGCTCCTCATTCCAATTTCGGTGGCTGTGTaGGGACCAAGTTCTCTTTTGTCGCCTCCCGTCCAA | + |
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Preference number: 6 (lower is better) Translates to: SLQLLIPISVAV*GPSSLLSPPVQ Trigger: TTGGACGGGAGGCGACAAAAGAGAACTTGGTCCGCACACAGCCACCGAAATTGGAATGAGGAGCTGTAGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000564509.5 ENST00000647734.1 |
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| CDS CAA 72 bp | CCCAGACCGTCTGACCTGAACACTTTGTCACCATGCTaGACATACCTGGATGCCCTGCTGAGGTCACTTCGA | + |
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Preference number: 6 (lower is better) Translates to: PRPSDLNTLSPC*TYLDALLRSLR Trigger: TCGAAGTGACCTCAGCAGGGCATCCAGGTATGTCAAGCATGGTGACAAAGTGTTCAGGTCAGACGGTCTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000366365.3 ENST00000648926.1 |
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| CDS CAA 90 bp | GAGCCTTTCCCCAGACCGTCTGACCTGAACACTTTGTCACCATGCTaGACATACCTGGATGCCCTGCTGAGGTCACTTCGAATGCTCTCA | + |
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Preference number: 6 (lower is better) Translates to: EPFPRPSDLNTLSPC*TYLDALLRSLRMLS Trigger: TGAGAGCATTCGAAGTGACCTCAGCAGGGCATCCAGGTATGTCAAGCATGGTGACAAAGTGTTCAGGTCAGACGGTCTGGGGAAAGGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000366365.3 ENST00000648926.1 |
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| CDS GCA 72 bp | TTCCCCAGACCGTCTGACCTGAACACTTTGTCACCATaGTTGACATACCTGGATGCCCTGCTGAGGTCACTT | + |
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Preference number: 6 (lower is better) Translates to: FPRPSDLNTLSP*LTYLDALLRSL Trigger: AAGTGACCTCAGCAGGGCATCCAGGTATGTCAAGCATGGTGACAAAGTGTTCAGGTCAGACGGTCTGGGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000366365.3 ENST00000648926.1 |
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| CDS CAA 90 bp | GCCAAAATCCTCCAAAACCAAGATGGCTATGAGAGTGACCTCTGGTaGCCCTCACTGGTACACGCCCACCAGCGCCATGACAGTTTACAA | + |
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Preference number: 6 (lower is better) Translates to: AKILQNQDGYESDLW*PSLVHAHQRHDSLQ Trigger: TTGTAAACTGTCATGGCGCTGGTGGGCGTGTACCAGTGAGGGCAACCAGAGGTCACTCTCATAGCCATCTTGGTTTTGGAGGATTTTGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS TCA 72 bp | AAGATGCAGGCCGTCCTGGCCTATTGGGATACCCCCTaGAAAGCCTATTGCTCCAAAAGACCTGGTAGATTC | + |
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Preference number: 6 (lower is better) Translates to: KMQAVLAYWDTP*KAYCSKRPGRF Trigger: GAATCTACCAGGTCTTTTGGAGCAATAGGCTTTTCAGGGGGTATCCCAATAGGCCAGGACGGCCTGCATCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS CCA 72 bp | CGGCGGGCACAGGAACCACAGAGTATGTGGTCACCTTaGCGTGTATCTATTTATAGCCATACACAACAGGGT | + |
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Preference number: 6 (lower is better) Translates to: RRAQEPQSMWSP*RVSIYSHTQQG Trigger: ACCCTGTTGTGTATGGCTATAAATAGATACACGCCAAGGTGACCACATACTCTGTGGTTCCTGTGCCCGCCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000434411.6 ENST00000568363.5 ENST00000647734.1 ENST00000649047.1 ENST00000649712.1 |
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| CDS CCA 72 bp | ACACATGGCCGGCGGGCACAGGAACCACAGAGTATGTaGTCACCTTGGCGTGTATCTATTTATAGCCATACA | + |
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Preference number: 6 (lower is better) Translates to: THGRRAQEPQSM*SPWRVSIYSHT Trigger: TGTATGGCTATAAATAGATACACGCCAAGGTGACCACATACTCTGTGGTTCCTGTGCCCGCCGGCCATGTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000434411.6 ENST00000568363.5 ENST00000647734.1 ENST00000649047.1 ENST00000649712.1 |
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| CDS TCA 72 bp | TTGAAGGCTGAGGCAGGAAAACTGAGGCCAAGAGCTTaGGACCAGCCTATAGGCAACATAGTGAGACTCTGT | + |
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Preference number: 6 (lower is better) Translates to: LKAEAGKLRPRA*DQPIGNIVRLC Trigger: ACAGAGTCTCACTATGTTGCCTATAGGCTGGTCTCAAGCTCTTGGCCTCAGTTTTCCTGCCTCAGCCTTCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000434411.6 ENST00000647734.1 ENST00000649047.1 ENST00000649712.1 |
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| CDS GCA 72 bp | CCTGAACACTTTGTCACCATGCTTGACATACCTGGATaGCCTGCTGAGGTCACTTCGAATGCTCTCATCAAC | + |
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Preference number: 6 (lower is better) Translates to: PEHFVTMLDIPG*PAEVTSNALIN Trigger: GTTGATGAGAGCATTCGAAGTGACCTCAGCAGGGCATCCAGGTATGTCAAGCATGGTGACAAAGTGTTCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000366365.3 ENST00000648926.1 |
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| CDS GCA 72 bp | CTTGCTCTGAGTCTAATCCCACAACCAAGGAAGAATTaGTGGACCTTGTCTCAGAGGCGTTTGAACCAGAGC | + |
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Preference number: 6 (lower is better) Translates to: LALSLIPQPRKN*WTLSQRRLNQS Trigger: GCTCTGGTTCAAACGCCTCTGAGACAAGGTCCAGCAATTCTTCCTTGGTTGTGGGATTAGACTCAGAGCAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS CCA 72 bp | AAAAGACCTGGTAGATTCCCGACAGTTCACTGTCTGTaGGCACAGGAAGCAACGAACAGGAATCTTGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: KRPGRFPTVHCL*AQEATNRNLAL Trigger: CAGAGCAAGATTCCTGTTCGTTGCTTCCTGTGCCCACAGACAGTGAACTGTCGGGAATCTACCAGGTCTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS CCA 72 bp | AAGTGCAAAGACCACTCCTGTCTTGTAGATGAGAAGTaGGGCGCTCCGGAGATGCTTGGTTACTTTTCCAAG | + |
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Preference number: 6 (lower is better) Translates to: KCKDHSCLVDEK*GAPEMLGYFSK Trigger: CTTGGAAAAGTAACCAAGCATCTCCGGAGCGCCCCACTTCTCATCTACAAGACAGGAGTGGTCTTTGCACTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS CCA 72 bp | TCTGTCCCAGAACACTTCCAAATACTGCAGGACATGTaGCTCAACATGAGCCAAAAAGACGGTGTCCCCATG | + |
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Preference number: 6 (lower is better) Translates to: SVPEHFQILQDM*LNMSQKDGVPM Trigger: CATGGGGACACCGTCTTTTTGGCTCATGTTGAGCCACATGTCCTGCAGTATTTGGAAGTGTTCTGGGACAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000650557.1 |
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| CDS CCA 72 bp | ACTCAATGGGGCCAGCCACGCATAGAAGGTAAAATGTaGCTTACGGAGCCTCGTGTGGGAGTCAACATTAAA | + |
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Preference number: 6 (lower is better) Translates to: TQWGQPRIEGKM*LTEPRVGVNIK Trigger: TTTAATGTTGACTCCCACACGAGGCTCCGTAAGCCACATTTTACCTTCTATGCGTGGCTGGCCCCATTGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000648740.1 ENST00000650557.1 |
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| CDS TCA 72 bp | CCACAGCTGACAGTCTGTGAACATGTGACCTTCCAGTaGCTTACACGGGGCTCCTTTCATTACCATTGCAAT | + |
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Preference number: 6 (lower is better) Translates to: PQLTVCEHVTFQ*LTRGSFHYHCN Trigger: ATTGCAATGGTAATGAAAGGAGCCCCGTGTAAGTCACTGGAAGGTCACATGTTCACAGACTGTCAGCTGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000561633.5 ENST00000564414.5 ENST00000564509.5 ENST00000568056.5 ENST00000569632.1 ENST00000648740.1 ENST00000650557.1 |
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| CDS TCA 72 bp | AACACTTCCAAATACTGCAGGACATGTGGCTCAACATaGGCCAAAAAGACGGTGTCCCCATGCATAGACCTG | + |
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Preference number: 6 (lower is better) Translates to: NTSKYCRTCGST*AKKTVSPCIDL Trigger: CAGGTCTATGCATGGGGACACCGTCTTTTTGGCTCATGTTGAGCCACATGTCCTGCAGTATTTGGAAGTGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000650557.1 |
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| CDS GCA 72 bp | CTGTCTGTGGGCACAGGAAGCAACGAACAGGAATCTTaGTCTGAGTCTAATCCCACAACCAAGGAAGAATTG | + |
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Preference number: 6 (lower is better) Translates to: LSVGTGSNEQES*SESNPTTKEEL Trigger: CAATTCTTCCTTGGTTGTGGGATTAGACTCAGAGCAAGATTCCTGTTCGTTGCTTCCTGTGCCCACAGACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS CAA 72 bp | TCTTGCTCTGAGTCTAATCCCACAACCAAGGAAGAATaGCTGGACCTTGTCTCAGAGGCGTTTGAACCAGAG | + |
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Preference number: 6 (lower is better) Translates to: SCSESNPTTKEE*LDLVSEAFEPE Trigger: CTCTGGTTCAAACGCCTCTGAGACAAGGTCCAGCAATTCTTCCTTGGTTGTGGGATTAGACTCAGAGCAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS CAA 90 bp | CTTGCTCTGAGTCTAATCCCACAACCAAGGAAGAATTGCTGGACCTaGTCTCAGAGGCGTTTGAACCAGAGCAACTCCATCTTGAATAGG | + |
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Preference number: 6 (lower is better) Translates to: LALSLIPQPRKNCWT*SQRRLNQSNSILNR Trigger: CCTATTCAAGATGGAGTTGCTCTGGTTCAAACGCCTCTGAGACAAGGTCCAGCAATTCTTCCTTGGTTGTGGGATTAGACTCAGAGCAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS CAA 90 bp | GAACAGGAATCTTGCTCTGAGTCTAATCCCACAACCAAGGAAGAATaGCTGGACCTTGTCTCAGAGGCGTTTGAACCAGAGCAACTCCAT | + |
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Preference number: 6 (lower is better) Translates to: EQESCSESNPTTKEE*LDLVSEAFEPEQLH Trigger: ATGGAGTTGCTCTGGTTCAAACGCCTCTGAGACAAGGTCCAGCAATTCTTCCTTGGTTGTGGGATTAGACTCAGAGCAAGATTCCTGTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS TCA 72 bp | CTTCATCACTGCAGTGAAGGGCACGCGATCTTTATGTaGACAAAGTCTGTCCCAGAACACTTCCAAATACTG | + |
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Preference number: 6 (lower is better) Translates to: LHHCSEGHAIFM*TKSVPEHFQIL Trigger: CAGTATTTGGAAGTGTTCTGGGACAGACTTTGTTCACATAAAGATCGCGTGCCCTTCACTGCAGTGATGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650557.1 |
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| CDS GCA 72 bp | CATACAGCTCATAAAGACCTTGCTGATCAAACAGGCTaGAGTAAAGAAGACGGCCAAAATCCTCCAAAACCA | + |
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Preference number: 6 (lower is better) Translates to: HTAHKDLADQTG*SKEDGQNPPKP Trigger: TGGTTTTGGAGGATTTTGGCCGTCTTCTTTACTGCAGCCTGTTTGATCAGCAAGGTCTTTATGAGCTGTATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000647734.1 |
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| CDS CCA 72 bp | ATCTTCCCCGTTAACTTTCGAAGGGGTGAAGTATCTTaGAACAAAGACAGTACATTAGTGAAGGAGACTCAC | + |
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Preference number: 6 (lower is better) Translates to: IFPVNFRRGEVS*NKDSTLVKETH Trigger: GTGAGTCTCCTTCACTAATGTACTGTCTTTGTTCCAAGATACTTCACCCCTTCGAAAGTTAACGGGGAAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000648740.1 |
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| CDS TCA 72 bp | TCACATGTAACCACATCAAACCCAAACAGGCTTCTATaGGAATGTAGTTTTTGTGGTCTTGTTGCTAGCAAT | + |
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Preference number: 6 (lower is better) Translates to: SHVTTSNPNRLL*ECSFCGLVASN Trigger: ATTGCTAGCAACAAGACCACAAAAACTACATTCTCATAGAAGCCTGTTTGGGTTTGATGTGGTTACATGTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000650557.1 |
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