Pregenerated sensors for SNHG18 (Homo sapiens)
Ensembl gene IDs: ENSG00000250786Ensembl transcript IDs: ENST00000508179.1, ENST00000509788.1, ENST00000655411.1
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TTGGGTCTTGTATATATATGTGAGGCAGGCCCTGGTGGACTTGAGTaGAAGCTCAGACTGCAGAGTGGGGCACATGATGGGGTCCCAGGC | + |
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Preference number: 5 (lower is better) Translates to: LGLVYICEAGPGGLE*KLRLQSGAHDGVPG Trigger: GCCTGGGACCCCATCATGTGCCCCACTCTGCAGTCTGAGCTTCCACTCAAGTCCACCAGGGCCTGCCTCACATATATATACAAGACCCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000508179.1 |
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| CDS GCA 90 bp | GATGAGCAGAGTTTGCCTGGGTTAGGTGAGGTCCAGGTCATGCTGTaGCAACCTCTGGGAACATGTAGCAGTGGCAAAGTGCAACCCTCT | + |
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Preference number: 5 (lower is better) Translates to: DEQSLPGLGEVQVML*QPLGTCSSGKVQPS Trigger: AGAGGGTTGCACTTTGCCACTGCTACATGTTCCCAGAGGTTGGCACAGCATGACCTGGACCTCACCTAACCCAGGCAAACTCTGCTCATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508179.1 |
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| CDS TCA 90 bp | GCTTCCTTGAACTTGGCTGTGAGGTGGGGGAATGTGGTTCTCCCTTaGGAAATGGGTTCCAGAGAGCTCGAAGATGAGCAGAGTTTGCCT | + |
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Preference number: 5 (lower is better) Translates to: ASLNLAVRWGNVVLP*EMGSRELEDEQSLP Trigger: AGGCAAACTCTGCTCATCTTCGAGCTCTCTGGAACCCATTTCTCAAGGGAGAACCACATTCCCCCACCTCACAGCCAAGTTCAAGGAAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000508179.1 |
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| CDS TCA 90 bp | TGTCATGGATCACATCTTAAAGACCACAGATACCCGGCTTTCCTTTaGAGGTCACTCATGGCCCACAGTCATGTCCTGATTTCTTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: CHGSHLKDHRYPAFL*RSLMAHSHVLISSR Trigger: CCTGGAAGAAATCAGGACATGACTGTGGGCCATGAGTGACCTTCAAAGGAAAGCCGGGTATCTGTGGTCTTTAAGATGTGATCCATGACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508179.1 |
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| CDS TCA 90 bp | ACAATCTTACCACATCTTAAAGACCACAGATACCCGGCTTTCCTTTaGAGGTCACTCATGGCCCACAGTCATGTCCTGATTTCTTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: TILPHLKDHRYPAFL*RSLMAHSHVLISSR Trigger: CCTGGAAGAAATCAGGACATGACTGTGGGCCATGAGTGACCTTCAAAGGAAAGCCGGGTATCTGTGGTCTTTAAGATGTGGTAAGATTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000509788.1 ENST00000655411.1 |
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| CDS GCA 90 bp | TTTCTGTCTAAGTTTCTGGGTGGCTCCTTTTTAGTAAAACTGGTCTaGTTAACTTTGCCAATAGAGTGGGCTGCCACACTAAAGAGGAAT | + |
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Preference number: 5 (lower is better) Translates to: FLSKFLGGSFLVKLV*LTLPIEWAATLKRN Trigger: ATTCCTCTTTAGTGTGGCAGCCCACTCTATTGGCAAAGTTAAGCAGACCAGTTTTACTAAAAAGGAGCCACCCAGAAACTTAGACAGAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000508179.1 |
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| CDS GCA 90 bp | CAGGAAACTGCACTTGCTATGCACATTTGTGCTCATTCTCATCTGTaGCTCAAGTATTTTCTGTCTAAGTTTCTGGGTGGCTCCTTTTTA | + |
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Preference number: 5 (lower is better) Translates to: QETALAMHICAHSHL*LKYFLSKFLGGSFL Trigger: TAAAAAGGAGCCACCCAGAAACTTAGACAGAAAATACTTGAGGCACAGATGAGAATGAGCACAAATGTGCATAGCAAGTGCAGTTTCCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000508179.1 |
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| CDS CCA 90 bp | GACATTCAAGATATATACAAGACTCAATGTCGGAAAATAACACCCTaGAAACCATCCAGAGGCTTCATCTCCATTACAAGCTATCTGTAT | + |
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Preference number: 5 (lower is better) Translates to: DIQDIYKTQCRKITP*KPSRGFISITSYLY Trigger: ATACAGATAGCTTGTAATGGAGATGAAGCCTCTGGATGGTTTCCAGGGTGTTATTTTCCGACATTGAGTCTTGTATATATCTTGAATGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508179.1 |
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| CDS CCA 72 bp | GCCGCACTCGCACTGGGGAGGCTGGAATGGAACTCCTaGGGTGCAGCGGGGCTCCCAGGAGCGAAGGTGGGG | + |
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Preference number: 6 (lower is better) Translates to: AALALGRLEWNS*GAAGLPGAKVG Trigger: CCCCACCTTCGCTCCTGGGAGCCCCGCTGCACCCCAGGAGTTCCATTCCAGCCTCCCCAGTGCGAGTGCGGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000508179.1 ENST00000509788.1 ENST00000655411.1 |
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| CDS GCA 72 bp | TGTGCCAACCTCTGGGAACATGTAGCAGTGGCAAAGTaGAACCCTCTGACCAGACATGGGCAGAGGCAGACT | + |
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Preference number: 6 (lower is better) Translates to: CANLWEHVAVAK*NPLTRHGQRQT Trigger: AGTCTGCCTCTGCCCATGTCTGGTCAGAGGGTTGCACTTTGCCACTGCTACATGTTCCCAGAGGTTGGCACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508179.1 |
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| CDS GCA 72 bp | AGTTTGCCTGGGTTAGGTGAGGTCCAGGTCATGCTGTaGCAACCTCTGGGAACATGTAGCAGTGGCAAAGTG | + |
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Preference number: 6 (lower is better) Translates to: SLPGLGEVQVML*QPLGTCSSGKV Trigger: CACTTTGCCACTGCTACATGTTCCCAGAGGTTGGCACAGCATGACCTGGACCTCACCTAACCCAGGCAAACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508179.1 |
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| CDS CAA 72 bp | GTCTTGTATATATATGTGAGGCAGGCCCTGGTGGACTaGAGTGGAAGCTCAGACTGCAGAGTGGGGCACATG | + |
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Preference number: 6 (lower is better) Translates to: VLYIYVRQALVD*SGSSDCRVGHM Trigger: CATGTGCCCCACTCTGCAGTCTGAGCTTCCACTCAAGTCCACCAGGGCCTGCCTCACATATATATACAAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508179.1 |
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| CDS CAA 72 bp | CCTCTGACCAGACATGGGCAGAGGCAGACTCTGACATaGGGTCTTGTATATATATGTGAGGCAGGCCCTGGT | + |
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Preference number: 6 (lower is better) Translates to: PLTRHGQRQTLT*GLVYICEAGPG Trigger: ACCAGGGCCTGCCTCACATATATATACAAGACCCAATGTCAGAGTCTGCCTCTGCCCATGTCTGGTCAGAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508179.1 |
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| CDS CAA 90 bp | AAGTGCAACCCTCTGACCAGACATGGGCAGAGGCAGACTCTGACATaGGGTCTTGTATATATATGTGAGGCAGGCCCTGGTGGACTTGAG | + |
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Preference number: 6 (lower is better) Translates to: KCNPLTRHGQRQTLT*GLVYICEAGPGGLE Trigger: CTCAAGTCCACCAGGGCCTGCCTCACATATATATACAAGACCCAATGTCAGAGTCTGCCTCTGCCCATGTCTGGTCAGAGGGTTGCACTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508179.1 |
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| CDS CAA 72 bp | GTATCCTTGAGTCATTGCTTTAGCCAGGCTGCTTCCTaGAACTTGGCTGTGAGGTGGGGGAATGTGGTTCTC | + |
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Preference number: 6 (lower is better) Translates to: VSLSHCFSQAAS*NLAVRWGNVVL Trigger: GAGAACCACATTCCCCCACCTCACAGCCAAGTTCAAGGAAGCAGCCTGGCTAAAGCAATGACTCAAGGATAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000508179.1 |
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| CDS TCA 72 bp | CCACATCTTAAAGACCACAGATACCCGGCTTTCCTTTaGAGGTCACTCATGGCCCACAGTCATGTCCTGATT | + |
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Preference number: 6 (lower is better) Translates to: PHLKDHRYPAFL*RSLMAHSHVLI Trigger: AATCAGGACATGACTGTGGGCCATGAGTGACCTTCAAAGGAAAGCCGGGTATCTGTGGTCTTTAAGATGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000509788.1 ENST00000655411.1 |
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| CDS TCA 72 bp | TCACATCTTAAAGACCACAGATACCCGGCTTTCCTTTaGAGGTCACTCATGGCCCACAGTCATGTCCTGATT | + |
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Preference number: 6 (lower is better) Translates to: SHLKDHRYPAFL*RSLMAHSHVLI Trigger: AATCAGGACATGACTGTGGGCCATGAGTGACCTTCAAAGGAAAGCCGGGTATCTGTGGTCTTTAAGATGTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508179.1 |
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| CDS GCA 72 bp | AAAACTGGTCTGCTTAACTTTGCCAATAGAGTGGGCTaGCACACTAAAGAGGAATGCGTGTTTCTTGGGGTA | + |
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Preference number: 6 (lower is better) Translates to: KTGLLNFANRVG*HTKEECVFLGV Trigger: TACCCCAAGAAACACGCATTCCTCTTTAGTGTGGCAGCCCACTCTATTGGCAAAGTTAAGCAGACCAGTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000508179.1 |
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| CDS CAA 90 bp | AAGTTTCTGGGTGGCTCCTTTTTAGTAAAACTGGTCTGCTTAACTTaGCCAATAGAGTGGGCTGCCACACTAAAGAGGAATGCGTGTTTC | + |
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Preference number: 6 (lower is better) Translates to: KFLGGSFLVKLVCLT*PIEWAATLKRNACF Trigger: GAAACACGCATTCCTCTTTAGTGTGGCAGCCCACTCTATTGGCAAAGTTAAGCAGACCAGTTTTACTAAAAAGGAGCCACCCAGAAACTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000508179.1 |
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| CDS GCA 72 bp | AAGTTTCTGGGTGGCTCCTTTTTAGTAAAACTGGTCTaGTTAACTTTGCCAATAGAGTGGGCTGCCACACTA | + |
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Preference number: 6 (lower is better) Translates to: KFLGGSFLVKLV*LTLPIEWAATL Trigger: TAGTGTGGCAGCCCACTCTATTGGCAAAGTTAAGCAGACCAGTTTTACTAAAAAGGAGCCACCCAGAAACTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000508179.1 |
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| CDS GCA 72 bp | GCACTTGCTATGCACATTTGTGCTCATTCTCATCTGTaGCTCAAGTATTTTCTGTCTAAGTTTCTGGGTGGC | + |
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Preference number: 6 (lower is better) Translates to: ALAMHICAHSHL*LKYFLSKFLGG Trigger: GCCACCCAGAAACTTAGACAGAAAATACTTGAGGCACAGATGAGAATGAGCACAAATGTGCATAGCAAGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508179.1 |
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| CDS CAA 72 bp | GGTGGCTCCTTTTTAGTAAAACTGGTCTGCTTAACTTaGCCAATAGAGTGGGCTGCCACACTAAAGAGGAAT | + |
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Preference number: 6 (lower is better) Translates to: GGSFLVKLVCLT*PIEWAATLKRN Trigger: ATTCCTCTTTAGTGTGGCAGCCCACTCTATTGGCAAAGTTAAGCAGACCAGTTTTACTAAAAAGGAGCCACC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000508179.1 |
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| CDS CCA 72 bp | TTAGTAAAACTGGTCTGCTTAACTTTGCCAATAGAGTaGGCTGCCACACTAAAGAGGAATGCGTGTTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: LVKLVCLTLPIE*AATLKRNACFL Trigger: CAAGAAACACGCATTCCTCTTTAGTGTGGCAGCCCACTCTATTGGCAAAGTTAAGCAGACCAGTTTTACTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508179.1 |
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| CDS CAA 90 bp | AAAGCAGCCCTAGGCAATCTTAGTGAGACATCAAACTTCACGTCTTaGTACCAATGTTTAGCATTAGGAAAAAGACTGATGGGCCTGATC | + |
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Preference number: 6 (lower is better) Translates to: KAALGNLSETSNFTS*YQCLALGKRLMGLI Trigger: GATCAGGCCCATCAGTCTTTTTCCTAATGCTAAACATTGGTACAAAGACGTGAAGTTTGATGTCTCACTAAGATTGCCTAGGGCTGCTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000508179.1 ENST00000509788.1 |
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| CDS CCA 72 bp | GATATATACAAGACTCAATGTCGGAAAATAACACCCTaGAAACCATCCAGAGGCTTCATCTCCATTACAAGC | + |
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Preference number: 6 (lower is better) Translates to: DIYKTQCRKITP*KPSRGFISITS Trigger: GCTTGTAATGGAGATGAAGCCTCTGGATGGTTTCCAGGGTGTTATTTTCCGACATTGAGTCTTGTATATATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508179.1 |
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| CDS CAA 72 bp | CTAGGCAATCTTAGTGAGACATCAAACTTCACGTCTTaGTACCAATGTTTAGCATTAGGAAAAAGACTGATG | + |
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Preference number: 6 (lower is better) Translates to: LGNLSETSNFTS*YQCLALGKRLM Trigger: CATCAGTCTTTTTCCTAATGCTAAACATTGGTACAAAGACGTGAAGTTTGATGTCTCACTAAGATTGCCTAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000508179.1 ENST00000509788.1 |
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