Pregenerated sensors for SNHG12 (Homo sapiens)
Ensembl gene IDs: ENSG00000197989Ensembl transcript IDs: ENST00000461448.6, ENST00000461832.2, ENST00000464115.1, ENST00000464612.5, ENST00000470977.6, ENST00000474814.1, ENST00000475441.6, ENST00000481220.6, ENST00000481368.6, ENST00000483436.5, ENST00000488745.5, ENST00000531126.6, ENST00000648127.1, ENST00000648251.1, ENST00000648327.1, ENST00000650239.1
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGCCGCCTGCCTGCAACACTCACCTGTCAGCCCAGAGCGCAGCGTTaGGCAGTCCGAAGCGAGAGAAGGGCGCGGCCCCCGCGGGCTCCC | + |
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Preference number: 5 (lower is better) Translates to: GRLPATLTCQPRAQR*AVRSERRARPPRAP Trigger: GGGAGCCCGCGGGGGCCGCGCCCTTCTCTCGCTTCGGACTGCGCAACGCTGCGCTCTGGGCTGACAGGTGAGTGTTGCAGGCAGGCGGCC 73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000474814.1 ENST00000648327.1 |
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| CDS GCA 90 bp | CTTGATGGGACCGTTTTATCCGCCTGTCAGCCCAGAGCGCAGCGTTaGGCAGTCCGAAGCGAGAGAAGGGCGCGGCCCCCGCGGGCTCCC | + |
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Preference number: 5 (lower is better) Translates to: LDGTVLSACQPRAQR*AVRSERRARPPRAP Trigger: GGGAGCCCGCGGGGGCCGCGCCCTTCTCTCGCTTCGGACTGCGCAACGCTGCGCTCTGGGCTGACAGGCGGATAAAACGGTCCCATCAAG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 10 transcripts: ENST00000461448.6 ENST00000461832.2 ENST00000464115.1 ENST00000470977.6 ENST00000481368.6 ENST00000483436.5 ENST00000531126.6 ENST00000648127.1 ENST00000648251.1 ENST00000650239.1 |
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| CDS GCA 90 bp | GTGTGCTGGGAAAGGGCTCGGGCTCCGCTCCGAGCTCAGTGGGCGTaGGAGCGAGCAGCGCCTGAGTGGGTTTCGGGGAGGGGGTCATAC | + |
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Preference number: 5 (lower is better) Translates to: VCWERARAPLRAQWA*ERAAPEWVSGRGSY Trigger: GTATGACCCCCTCCCCGAAACCCACTCAGGCGCTGCTCGCTCGCACGCCCACTGAGCTCGGAGCGGAGCCCGAGCCCTTTCCCAGCACAC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000488745.5 ENST00000648127.1 ENST00000648327.1 |
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| CDS GCA 90 bp | GCCAGAGGCTTTCCTCCGAGCGGAAGAAGCGCCTTCACCTTTCAGTaGCCGGCGCTGGGCCCACGCAGGAAGCCGACCCGCCTTGGCCTC | + |
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Preference number: 5 (lower is better) Translates to: ARGFPPSGRSAFTFQ*PALGPRRKPTRLGL Trigger: GAGGCCAAGGCGGGTCGGCTTCCTGCGTGGGCCCAGCGCCGGGCACTGAAAGGTGAAGGCGCTTCTTCCGCTCGGAGGAAAGCCTCTGGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000648127.1 ENST00000648327.1 |
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| CDS GCA 90 bp | ACATTCACCACCATCTCGAGGCCGTGGGAGGAAAAACCCGGCGAGTaGGCGCCAGCAGCAGCGACTAGCGGGGAACGGCGCGCAGGAAGG | + |
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Preference number: 5 (lower is better) Translates to: TFTTISRPWEEKPGE*APAAATSGERRAGR Trigger: CCTTCCTGCGCGCCGTTCCCCGCTAGTCGCTGCTGCTGGCGCGCACTCGCCGGGTTTTTCCTCCCACGGCCTCGAGATGGTGGTGAATGT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 12 transcripts: ENST00000461448.6 ENST00000461832.2 ENST00000464115.1 ENST00000470977.6 ENST00000474814.1 ENST00000481220.6 ENST00000481368.6 ENST00000483436.5 ENST00000648127.1 ENST00000648251.1 ENST00000648327.1 ENST00000650239.1 |
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| CDS GCA 90 bp | CTTTCGGAGCTCGGGCCCACCGGGTTGGAAGGCCCGGCTCCTCCGTaGCACATTCACCACCATCTCGAGGCCGTGGGAGGAAAAACCCGG | + |
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Preference number: 5 (lower is better) Translates to: LSELGPTGLEGPAPP*HIHHHLEAVGGKTR Trigger: CCGGGTTTTTCCTCCCACGGCCTCGAGATGGTGGTGAATGTGGCACGGAGGAGCCGGGCCTTCCAACCCGGTGGGCCCGAGCTCCGAAAG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 12 transcripts: ENST00000461448.6 ENST00000461832.2 ENST00000464115.1 ENST00000470977.6 ENST00000474814.1 ENST00000481220.6 ENST00000481368.6 ENST00000483436.5 ENST00000648127.1 ENST00000648251.1 ENST00000648327.1 ENST00000650239.1 |
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| CDS GCA 90 bp | GAGACCGGTTCCCAAACCCCCACCCCTTCCGTAAACCCGGCCGCCTaGCTGCAACACTCACCTGTCAGCCCAGAGCGCAGCGTTGCGCAG | + |
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Preference number: 5 (lower is better) Translates to: ETGSQTPTPSVNPAA*LQHSPVSPERSVAQ Trigger: CTGCGCAACGCTGCGCTCTGGGCTGACAGGTGAGTGTTGCAGGCAGGCGGCCGGGTTTACGGAAGGGGTGGGGGTTTGGGAACCGGTCTC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000474814.1 ENST00000648327.1 |
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| CDS GCA 90 bp | GGAGTTGTCTCTGGGATGTCTTTCAGTCTGGAAATGAACCCTGTGTaGTGGGAAAGGGCTCGGGCTCCGCTCCGAGCTCAGTGGGCGTGC | + |
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Preference number: 5 (lower is better) Translates to: GVVSGMSFSLEMNPV*WERARAPLRAQWAC Trigger: GCACGCCCACTGAGCTCGGAGCGGAGCCCGAGCCCTTTCCCAGCACACAGGGTTCATTTCCAGACTGAAAGACATCCCAGAGACAACTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000488745.5 ENST00000648127.1 ENST00000648327.1 |
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| CDS CCA 90 bp | GTTGTCTCTGGGATGTCTTTCAGTCTGGAAATGAACCCTGTGTGCTaGGAAAGGGCTCGGGCTCCGCTCCGAGCTCAGTGGGCGTGCGAG | + |
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Preference number: 5 (lower is better) Translates to: VVSGMSFSLEMNPVC*ERARAPLRAQWACE Trigger: CTCGCACGCCCACTGAGCTCGGAGCGGAGCCCGAGCCCTTTCCCAGCACACAGGGTTCATTTCCAGACTGAAAGACATCCCAGAGACAAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000488745.5 ENST00000648127.1 ENST00000648327.1 |
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| CDS GCA 90 bp | AGCGAGGCTGAAAGCAACAAGCTGGGATGCACGCAAGGGTCTGAATaGCTAAAACCCGTCCTTCTGAAAACCGTGTCTACCAGGGCGACC | + |
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Preference number: 5 (lower is better) Translates to: SEAESNKLGCTQGSE*LKPVLLKTVSTRAT Trigger: GGTCGCCCTGGTAGACACGGTTTTCAGAAGGACGGGTTTTAGGCATTCAGACCCTTGCGTGCATCCCAGCTTGTTGCTTTCAGCCTCGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000474814.1 ENST00000648327.1 |
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| CDS TCA 90 bp | CACTGCCCACGCTGTGCCAATAGCTGGTGTGCTTTTTCTCAGTCTTaGTGGGACCGTTTTATCCGCCTATTACAGGTAAGAGGTTTAGAC | + |
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Preference number: 5 (lower is better) Translates to: HCPRCANSWCAFSQS*WDRFIRLLQVRGLD Trigger: GTCTAAACCTCTTACCTGTAATAGGCGGATAAAACGGTCCCATCAAGACTGAGAAAAAGCACACCAGCTATTGGCACAGCGTGGGCAGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000474814.1 ENST00000648327.1 |
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| CDS GCA 90 bp | CAGCTGGATTTTCCCAGTACGAGTCTTATGCTGGTTAACTGTACATaGAAACCCCCAACCGTTCTGCTGTTCTGTGGAAACAAGCCCATT | + |
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Preference number: 5 (lower is better) Translates to: QLDFPSTSLMLVNCT*KPPTVLLFCGNKPI Trigger: AATGGGCTTGTTTCCACAGAACAGCAGAACGGTTGGGGGTTTGCATGTACAGTTAACCAGCATAAGACTCGTACTGGGAAAATCCAGCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000464612.5 ENST00000474814.1 ENST00000481368.6 ENST00000648251.1 |
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| CDS TCA 90 bp | TGTAACTTTGACACAGACCTAAGTAACCTTATAGTTCTATTAGGTTaGCTACTTAGGACAGGATCCCAGATAGTTGAGCACTACCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: CNFDTDLSNLIVLLG*LLRTGSQIVEHYLQ Trigger: CTGCAGGTAGTGCTCAACTATCTGGGATCCTGTCCTAAGTAGTCAACCTAATAGAACTATAAGGTTACTTAGGTCTGTGTCAAAGTTACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650239.1 |
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| CDS TCA 90 bp | CTAAGATTATACTTCATTTTACAATTTCAGAGATCCAACCATCTCTaGAACCTGTCTGAAACTAGCCCACATGCCATATACCAGATTACA | + |
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Preference number: 5 (lower is better) Translates to: LRLYFILQFQRSNHL*NLSETSPHAIYQIT Trigger: TGTAATCTGGTATATGGCATGTGGGCTAGTTTCAGACAGGTTTCAGAGATGGTTGGATCTCTGAAATTGTAAAATGAAGTATAATCTTAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000461448.6 ENST00000461832.2 ENST00000470977.6 ENST00000474814.1 |
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| CDS CAA 90 bp | CGGCCGCCTGCCTGCAACACTCACCTGTCAGCCCAGAGCGCAGCGTaGCGCAGTCCGAAGCGAGAGAAGGGCGCGGCCCCCGCGGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: RPPACNTHLSAQSAA*RSPKREKGAAPAGS Trigger: GGAGCCCGCGGGGGCCGCGCCCTTCTCTCGCTTCGGACTGCGCAACGCTGCGCTCTGGGCTGACAGGTGAGTGTTGCAGGCAGGCGGCCG 73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000474814.1 ENST00000648327.1 |
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| CDS CCA 72 bp | GCCGAGGGGGCCTTTCGGAGCTCGGGCCCACCGGGTTaGAAGGCCCGGCTCCTCCGTGCCACATTCACCACC | + |
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Preference number: 6 (lower is better) Translates to: AEGAFRSSGPPG*KARLLRATFTT Trigger: GGTGGTGAATGTGGCACGGAGGAGCCGGGCCTTCCAACCCGGTGGGCCCGAGCTCCGAAAGGCCCCCTCGGC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 12 transcripts: ENST00000461448.6 ENST00000461832.2 ENST00000464115.1 ENST00000470977.6 ENST00000474814.1 ENST00000481220.6 ENST00000481368.6 ENST00000483436.5 ENST00000648127.1 ENST00000648251.1 ENST00000648327.1 ENST00000650239.1 |
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| CDS GCA 72 bp | GAAAGGGCTCGGGCTCCGCTCCGAGCTCAGTGGGCGTaGGAGCGAGCAGCGCCTGAGTGGGTTTCGGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: ERARAPLRAQWA*ERAAPEWVSGR Trigger: CCTCCCCGAAACCCACTCAGGCGCTGCTCGCTCGCACGCCCACTGAGCTCGGAGCGGAGCCCGAGCCCTTTC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000488745.5 ENST00000648127.1 ENST00000648327.1 |
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| CDS CAA 72 bp | TGCCGAGGGGGCCTTTCGGAGCTCGGGCCCACCGGGTaGGAAGGCCCGGCTCCTCCGTGCCACATTCACCAC | + |
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Preference number: 6 (lower is better) Translates to: CRGGLSELGPTG*EGPAPPCHIHH Trigger: GTGGTGAATGTGGCACGGAGGAGCCGGGCCTTCCAACCCGGTGGGCCCGAGCTCCGAAAGGCCCCCTCGGCA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 12 transcripts: ENST00000461448.6 ENST00000461832.2 ENST00000464115.1 ENST00000470977.6 ENST00000474814.1 ENST00000481220.6 ENST00000481368.6 ENST00000483436.5 ENST00000648127.1 ENST00000648251.1 ENST00000648327.1 ENST00000650239.1 |
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| CDS CAA 90 bp | CCCTCTCACTGCCGAGGGGGCCTTTCGGAGCTCGGGCCCACCGGGTaGGAAGGCCCGGCTCCTCCGTGCCACATTCACCACCATCTCGAG | + |
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Preference number: 6 (lower is better) Translates to: PSHCRGGLSELGPTG*EGPAPPCHIHHHLE Trigger: CTCGAGATGGTGGTGAATGTGGCACGGAGGAGCCGGGCCTTCCAACCCGGTGGGCCCGAGCTCCGAAAGGCCCCCTCGGCAGTGAGAGGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 12 transcripts: ENST00000461448.6 ENST00000461832.2 ENST00000464115.1 ENST00000470977.6 ENST00000474814.1 ENST00000481220.6 ENST00000481368.6 ENST00000483436.5 ENST00000648127.1 ENST00000648251.1 ENST00000648327.1 ENST00000650239.1 |
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| CDS GCA 72 bp | ACCATCTCGAGGCCGTGGGAGGAAAAACCCGGCGAGTaGGCGCCAGCAGCAGCGACTAGCGGGGAACGGCGC | + |
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Preference number: 6 (lower is better) Translates to: TISRPWEEKPGE*APAAATSGERR Trigger: GCGCCGTTCCCCGCTAGTCGCTGCTGCTGGCGCGCACTCGCCGGGTTTTTCCTCCCACGGCCTCGAGATGGT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 12 transcripts: ENST00000461448.6 ENST00000461832.2 ENST00000464115.1 ENST00000470977.6 ENST00000474814.1 ENST00000481220.6 ENST00000481368.6 ENST00000483436.5 ENST00000648127.1 ENST00000648251.1 ENST00000648327.1 ENST00000650239.1 |
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| CDS GCA 72 bp | CTCGGGCCCACCGGGTTGGAAGGCCCGGCTCCTCCGTaGCACATTCACCACCATCTCGAGGCCGTGGGAGGA | + |
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Preference number: 6 (lower is better) Translates to: LGPTGLEGPAPP*HIHHHLEAVGG Trigger: TCCTCCCACGGCCTCGAGATGGTGGTGAATGTGGCACGGAGGAGCCGGGCCTTCCAACCCGGTGGGCCCGAG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 12 transcripts: ENST00000461448.6 ENST00000461832.2 ENST00000464115.1 ENST00000470977.6 ENST00000474814.1 ENST00000481220.6 ENST00000481368.6 ENST00000483436.5 ENST00000648127.1 ENST00000648251.1 ENST00000648327.1 ENST00000650239.1 |
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| CDS GCA 72 bp | CCTGCAACACTCACCTGTCAGCCCAGAGCGCAGCGTTaGGCAGTCCGAAGCGAGAGAAGGGCGCGGCCCCCG | + |
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Preference number: 6 (lower is better) Translates to: PATLTCQPRAQR*AVRSERRARPP Trigger: CGGGGGCCGCGCCCTTCTCTCGCTTCGGACTGCGCAACGCTGCGCTCTGGGCTGACAGGTGAGTGTTGCAGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000474814.1 ENST00000648327.1 |
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| CDS CCA 72 bp | GCGGAAGAAGCGCCTTCACCTTTCAGTGCCCGGCGCTaGGCCCACGCAGGAAGCCGACCCGCCTTGGCCTCT | + |
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Preference number: 6 (lower is better) Translates to: AEEAPSPFSARR*AHAGSRPALAS Trigger: AGAGGCCAAGGCGGGTCGGCTTCCTGCGTGGGCCCAGCGCCGGGCACTGAAAGGTGAAGGCGCTTCTTCCGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000648127.1 ENST00000648327.1 |
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| CDS CAA 72 bp | CAGCTGCCTGGGAGTTGTAGTTTGCTCGCCCCGGCGTaGTCCGCGCGTCACCTCCCCAGCCCTACGCGCGTG | + |
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Preference number: 6 (lower is better) Translates to: QLPGSCSLLAPA*SARHLPSPTRV Trigger: CACGCGCGTAGGGCTGGGGAGGTGACGCGCGGACAACGCCGGGGCGAGCAAACTACAACTCCCAGGCAGCTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000648127.1 ENST00000648327.1 |
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| CDS GCA 72 bp | ACCGTTTTATCCGCCTGTCAGCCCAGAGCGCAGCGTTaGGCAGTCCGAAGCGAGAGAAGGGCGCGGCCCCCG | + |
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Preference number: 6 (lower is better) Translates to: TVLSACQPRAQR*AVRSERRARPP Trigger: CGGGGGCCGCGCCCTTCTCTCGCTTCGGACTGCGCAACGCTGCGCTCTGGGCTGACAGGCGGATAAAACGGT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 10 transcripts: ENST00000461448.6 ENST00000461832.2 ENST00000464115.1 ENST00000470977.6 ENST00000481368.6 ENST00000483436.5 ENST00000531126.6 ENST00000648127.1 ENST00000648251.1 ENST00000650239.1 |
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| CDS GCA 72 bp | TCCCAAACCCCCACCCCTTCCGTAAACCCGGCCGCCTaGCTGCAACACTCACCTGTCAGCCCAGAGCGCAGC | + |
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Preference number: 6 (lower is better) Translates to: SQTPTPSVNPAA*LQHSPVSPERS Trigger: GCTGCGCTCTGGGCTGACAGGTGAGTGTTGCAGGCAGGCGGCCGGGTTTACGGAAGGGGTGGGGGTTTGGGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000474814.1 ENST00000648327.1 |
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| CDS CCA 72 bp | CCCGGCGCTGGGCCCACGCAGGAAGCCGACCCGCCTTaGCCTCTGGAGTTGTCTCTGGGATGTCTTTCAGTC | + |
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Preference number: 6 (lower is better) Translates to: PGAGPTQEADPP*PLELSLGCLSV Trigger: GACTGAAAGACATCCCAGAGACAACTCCAGAGGCCAAGGCGGGTCGGCTTCCTGCGTGGGCCCAGCGCCGGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000488745.5 ENST00000648127.1 ENST00000648327.1 |
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| CDS CCA 72 bp | ATGGGACCGTTTTATCCGCCTTTCAGTGCCCGGCGCTaGGCCCACGCAGGAAGCCGACCCGCCTTGGCCTCT | + |
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Preference number: 6 (lower is better) Translates to: MGPFYPPFSARR*AHAGSRPALAS Trigger: AGAGGCCAAGGCGGGTCGGCTTCCTGCGTGGGCCCAGCGCCGGGCACTGAAAGGCGGATAAAACGGTCCCAT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000488745.5 |
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| CDS GCA 72 bp | CTCAGTCTTGATGGGACCGTTTTATCCGCCTTTCAGTaGCCGGCGCTGGGCCCACGCAGGAAGCCGACCCGC | + |
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Preference number: 6 (lower is better) Translates to: LSLDGTVLSAFQ*PALGPRRKPTR Trigger: GCGGGTCGGCTTCCTGCGTGGGCCCAGCGCCGGGCACTGAAAGGCGGATAAAACGGTCCCATCAAGACTGAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000488745.5 |
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| CDS CCA 72 bp | CTCCTCCGTGCCACATTCACCACCATCTCGAGGCCGTaGGAGGAAAAACCCGGCGAGTGCGCGCCAGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: LLRATFTTISRP*EEKPGECAPAA Trigger: TGCTGCTGGCGCGCACTCGCCGGGTTTTTCCTCCCACGGCCTCGAGATGGTGGTGAATGTGGCACGGAGGAG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 12 transcripts: ENST00000461448.6 ENST00000461832.2 ENST00000464115.1 ENST00000470977.6 ENST00000474814.1 ENST00000481220.6 ENST00000481368.6 ENST00000483436.5 ENST00000648127.1 ENST00000648251.1 ENST00000648327.1 ENST00000650239.1 |
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| CDS GCA 72 bp | TTAAGAGTCTTCATCTGTCAGCCCAGAGCGCAGCGTTaGGCAGTCCGAAGCGAGAGAAGGGCGCGGCCCCCG | + |
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Preference number: 6 (lower is better) Translates to: LRVFICQPRAQR*AVRSERRARPP Trigger: CGGGGGCCGCGCCCTTCTCTCGCTTCGGACTGCGCAACGCTGCGCTCTGGGCTGACAGATGAAGACTCTTAA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000481220.6 |
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| CDS CCA 72 bp | CTGGGCCCACGCAGGAAGCCGACCCGCCTTGGCCTCTaGAGTTGTCTCTGGGATGTCTTTCAGTCTGGAAAT | + |
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Preference number: 6 (lower is better) Translates to: LGPRRKPTRLGL*SCLWDVFQSGN Trigger: ATTTCCAGACTGAAAGACATCCCAGAGACAACTCCAGAGGCCAAGGCGGGTCGGCTTCCTGCGTGGGCCCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000488745.5 ENST00000648127.1 ENST00000648327.1 |
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| CDS GCA 72 bp | TCTGGGATGTCTTTCAGTCTGGAAATGAACCCTGTGTaGTGGGAAAGGGCTCGGGCTCCGCTCCGAGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: SGMSFSLEMNPV*WERARAPLRAQ Trigger: CTGAGCTCGGAGCGGAGCCCGAGCCCTTTCCCAGCACACAGGGTTCATTTCCAGACTGAAAGACATCCCAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000488745.5 ENST00000648127.1 ENST00000648327.1 |
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| CDS CAA 72 bp | AGTTGGAGATCCCATGGCTATGACCAGCCACAGCCCTaGGAAACATGCTGTTCTGTCCCACCAGGCAGCCCC | + |
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Preference number: 6 (lower is better) Translates to: SWRSHGYDQPQP*ETCCSVPPGSP Trigger: GGGGCTGCCTGGTGGGACAGAACAGCATGTTTCCAAGGGCTGTGGCTGGTCATAGCCATGGGATCTCCAACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000461448.6 ENST00000464115.1 ENST00000481220.6 ENST00000481368.6 |
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| CDS CCA 72 bp | CACACAGCTATCGCAAGCGAGGAGAGGACTGGAATTTaGAGCCCACCCCAGGCACCACACATAGCGCAATGT | + |
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Preference number: 6 (lower is better) Translates to: HTAIASEERTGI*SPPQAPHIAQC Trigger: ACATTGCGCTATGTGTGGTGCCTGGGGTGGGCTCCAAATTCCAGTCCTCTCCTCGCTTGCGATAGCTGTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000488745.5 ENST00000648127.1 ENST00000648327.1 |
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| CDS CCA 72 bp | AATGGATCACACAGCTATCGCAAGCGAGGAGAGGACTaGAATTTGGAGCCCACCCCAGGCACCACACATAGC | + |
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Preference number: 6 (lower is better) Translates to: NGSHSYRKRGED*NLEPTPGTTHS Trigger: GCTATGTGTGGTGCCTGGGGTGGGCTCCAAATTCCAGTCCTCTCCTCGCTTGCGATAGCTGTGTGATCCATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000488745.5 ENST00000648127.1 ENST00000648327.1 |
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| CDS CCA 72 bp | AGGAAGCCGACCCGCCTTGGCCTCTGGAGTTGTCTCTaGGATGTCTTTCAGTCTGGAAATGAACCCTGTGTG | + |
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Preference number: 6 (lower is better) Translates to: RKPTRLGLWSCL*DVFQSGNEPCV Trigger: CACACAGGGTTCATTTCCAGACTGAAAGACATCCCAGAGACAACTCCAGAGGCCAAGGCGGGTCGGCTTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000488745.5 ENST00000648127.1 ENST00000648327.1 |
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| CDS CAA 90 bp | AGGAATGGATCACACAGCTATCGCAAGCGAGGAGAGGACTGGAATTaGGAGCCCACCCCAGGCACCACACATAGCGCAATGTTTTGCCCA | + |
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Preference number: 6 (lower is better) Translates to: RNGSHSYRKRGEDWN*EPTPGTTHSAMFCP Trigger: TGGGCAAAACATTGCGCTATGTGTGGTGCCTGGGGTGGGCTCCAAATTCCAGTCCTCTCCTCGCTTGCGATAGCTGTGTGATCCATTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000488745.5 ENST00000648127.1 ENST00000648327.1 |
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| CDS TCA 72 bp | CGCTGTGCCAATAGCTGGTGTGCTTTTTCTCAGTCTTaGTGGGACCGTTTTATCCGCCTGTCAGCCCAGAGC | + |
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Preference number: 6 (lower is better) Translates to: RCANSWCAFSQS*WDRFIRLSAQS Trigger: GCTCTGGGCTGACAGGCGGATAAAACGGTCCCATCAAGACTGAGAAAAAGCACACCAGCTATTGGCACAGCG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 11 transcripts: ENST00000461448.6 ENST00000461832.2 ENST00000464115.1 ENST00000470977.6 ENST00000475441.6 ENST00000481368.6 ENST00000483436.5 ENST00000531126.6 ENST00000648127.1 ENST00000648251.1 ENST00000650239.1 |
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| CDS TCA 72 bp | CGCTGTGCCAATAGCTGGTGTGCTTTTTCTCAGTCTTaGTGGGACCGTTTTATCCGCCTTTCAGTGCCCGGC | + |
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Preference number: 6 (lower is better) Translates to: RCANSWCAFSQS*WDRFIRLSVPG Trigger: GCCGGGCACTGAAAGGCGGATAAAACGGTCCCATCAAGACTGAGAAAAAGCACACCAGCTATTGGCACAGCG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000488745.5 |
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| CDS GCA 72 bp | CTCTGTAGACTAAGTCAGTCATCCTGTAGGCCCCACTaGCCACGCTGTGCCAATAGCTGGTGTGCTTTTTCT | + |
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Preference number: 6 (lower is better) Translates to: LCRLSQSSCRPH*PRCANSWCAFS Trigger: AGAAAAAGCACACCAGCTATTGGCACAGCGTGGGCAGTGGGGCCTACAGGATGACTGACTTAGTCTACAGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 13 transcripts: ENST00000461448.6 ENST00000461832.2 ENST00000464115.1 ENST00000470977.6 ENST00000474814.1 ENST00000475441.6 ENST00000481368.6 ENST00000483436.5 ENST00000488745.5 ENST00000531126.6 ENST00000648127.1 ENST00000648251.1 ENST00000650239.1 |
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| CDS CCA 72 bp | CATCCCAGCTGGATTTTCCCAGTACGAGTCTTATGCTaGTTAACTGTACATGCAAACCCCCAACCGTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: HPSWIFPVRVLC*LTVHANPQPFC Trigger: GCAGAACGGTTGGGGGTTTGCATGTACAGTTAACCAGCATAAGACTCGTACTGGGAAAATCCAGCTGGGATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000464612.5 ENST00000474814.1 ENST00000481368.6 ENST00000648251.1 |
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| CDS GCA 72 bp | TCACATCCCAGCTGGATTTTCCCAGTACGAGTCTTATaGTGGTTAACTGTACATGCAAACCCCCAACCGTTC | + |
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Preference number: 6 (lower is better) Translates to: SHPSWIFPVRVL*WLTVHANPQPF Trigger: GAACGGTTGGGGGTTTGCATGTACAGTTAACCAGCATAAGACTCGTACTGGGAAAATCCAGCTGGGATGTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000464612.5 ENST00000474814.1 ENST00000481368.6 ENST00000648251.1 |
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| CDS TCA 72 bp | CGCTGTGCCAATAGCTGGTGTGCTTTTTCTCAGTCTTaGTGGGACCGTTTTATCCGCCTATTACAGGTAAGA | + |
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Preference number: 6 (lower is better) Translates to: RCANSWCAFSQS*WDRFIRLLQVR Trigger: TCTTACCTGTAATAGGCGGATAAAACGGTCCCATCAAGACTGAGAAAAAGCACACCAGCTATTGGCACAGCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000474814.1 ENST00000648327.1 |
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| CDS GCA 72 bp | TTTCCCAGTACGAGTCTTATGCTGGTTAACTGTACATaGAAACCCCCAACCGTTCTGCTGTTCTGTGGAAAC | + |
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Preference number: 6 (lower is better) Translates to: FPSTSLMLVNCT*KPPTVLLFCGN Trigger: GTTTCCACAGAACAGCAGAACGGTTGGGGGTTTGCATGTACAGTTAACCAGCATAAGACTCGTACTGGGAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000464612.5 ENST00000474814.1 ENST00000481368.6 ENST00000648251.1 |
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| CDS CCA 72 bp | CTGTACATGCAAACCCCCAACCGTTCTGCTGTTCTGTaGAAACAAGCCCATTTTGATAAAGGTCTCTGGCTA | + |
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Preference number: 6 (lower is better) Translates to: LYMQTPNRSAVL*KQAHFDKGLWL Trigger: TAGCCAGAGACCTTTATCAAAATGGGCTTGTTTCCACAGAACAGCAGAACGGTTGGGGGTTTGCATGTACAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000464612.5 ENST00000474814.1 ENST00000481368.6 ENST00000648251.1 |
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| CDS TCA 72 bp | AACAAGCCCATTTTGATAAAGGTCTCTGGCTACAGCTaGAAGGTGGCAGGTACAATGGAACTGTATTTTCCC | + |
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Preference number: 6 (lower is better) Translates to: NKPILIKVSGYS*KVAGTMELYFP Trigger: GGGAAAATACAGTTCCATTGTACCTGCCACCTTTCAGCTGTAGCCAGAGACCTTTATCAAAATGGGCTTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000464612.5 ENST00000474814.1 ENST00000481368.6 ENST00000648251.1 |
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| CDS TCA 72 bp | GACACAGACCTAAGTAACCTTATAGTTCTATTAGGTTaGCTACTTAGGACAGGATCCCAGATAGTTGAGCAC | + |
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Preference number: 6 (lower is better) Translates to: DTDLSNLIVLLG*LLRTGSQIVEH Trigger: GTGCTCAACTATCTGGGATCCTGTCCTAAGTAGTCAACCTAATAGAACTATAAGGTTACTTAGGTCTGTGTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650239.1 |
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| CDS TCA 72 bp | AACAATTTTATTGTTCCCATCATTTGGTCCTCAGAATaGTACAAATCTGACCAGCCTTTGGTCCCAATACTG | + |
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Preference number: 6 (lower is better) Translates to: NNFIVPIIWSSE*YKSDQPLVPIL Trigger: CAGTATTGGGACCAAAGGCTGGTCAGATTTGTATCATTCTGAGGACCAAATGATGGGAACAATAAAATTGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000464612.5 ENST00000474814.1 ENST00000481368.6 ENST00000648251.1 |
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