Pregenerated sensors for SND1-IT1 (Homo sapiens)
Ensembl gene IDs: ENSG00000279078Ensembl transcript IDs: ENST00000623342.1
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TCTAAGGAGAGGAATAGGGAAACAGTCAAGCTAAGCCAGCAGCTTTaGAGAGAGGAATCCCACTGGAGCCAGCACAGTATTGGCACCTAT | + |
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Preference number: 5 (lower is better) Translates to: SKERNRETVKLSQQL*REESHWSQHSIGTY Trigger: ATAGGTGCCAATACTGTGCTGGCTCCAGTGGGATTCCTCTCTGCAAAGCTGCTGGCTTAGCTTGACTGTTTCCCTATTCCTCTCCTTAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS TCA 90 bp | CGTCTGCTGAAAAGGATTTTCTTCCCTGGGCTAGAATTACATCCTTaGGGCCTTCCTACATGTTCCAAGGAGGCCAAATCTCTTGTGGTC | + |
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Preference number: 5 (lower is better) Translates to: RLLKRIFFPGLELHP*GLPTCSKEAKSLVV Trigger: GACCACAAGAGATTTGGCCTCCTTGGAACATGTAGGAAGGCCTCAAGGATGTAATTCTAGCCCAGGGAAGAAAATCCTTTTCAGCAGACG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS TCA 90 bp | CTAGGTCATAGGCCCTACATAGCTATGAGAGGGAGACCAGGAGACTaGATGTGCCTGGCAATAGCTATCTTCCATAGGAATGGCTCATTA | + |
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Preference number: 5 (lower is better) Translates to: LGHRPYIAMRGRPGD*MCLAIAIFHRNGSL Trigger: TAATGAGCCATTCCTATGGAAGATAGCTATTGCCAGGCACATTCAGTCTCCTGGTCTCCCTCTCATAGCTATGTAGGGCCTATGACCTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS TCA 90 bp | TATACTAGGCACTGGAGTACAAAGACAAAACATGGTTCCTGTCTGTaGGGAGCTTACAAGCTAGTGGGGAGAGACTTGGGTCATAGATCC | + |
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Preference number: 5 (lower is better) Translates to: YTRHWSTKTKHGSCL*GAYKLVGRDLGHRS Trigger: GGATCTATGACCCAAGTCTCTCCCCACTAGCTTGTAAGCTCCTCACAGACAGGAACCATGTTTTGTCTTTGTACTCCAGTGCCTAGTATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS TCA 90 bp | TTTCTCCTTGTGATGCCACTTTCATTTAGGGGCTGGAATGGGATTTaGGGGCCCTCTCTTCTCTCTAGGCTTTCTGAAGTACTTCGCAAA | + |
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Preference number: 5 (lower is better) Translates to: FLLVMPLSFRGWNGI*GPSLLSRLSEVLRK Trigger: TTTGCGAAGTACTTCAGAAAGCCTAGAGAGAAGAGAGGGCCCTCAAATCCCATTCCAGCCCCTAAATGAAAGTGGCATCACAAGGAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS TCA 90 bp | TACTCTGGGCTGAGCTGGGTTAGACCTAAAGATGGAGAGGAAAAGTaGGTGCCAGGAGTCTTGGAACTGCTAAGGTTTCTATTGCTTCTA | + |
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Preference number: 5 (lower is better) Translates to: YSGLSWVRPKDGEEK*VPGVLELLRFLLLL Trigger: TAGAAGCAATAGAAACCTTAGCAGTTCCAAGACTCCTGGCACTCACTTTTCCTCTCCATCTTTAGGTCTAACCCAGCTCAGCCCAGAGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS TCA 90 bp | GTGGCAAGGGTTCTGCTTGGCAAGGCTCTGTTTCAAGGACTTTCATaGCCTTATGTGATCCAGTACATGCATTCCCCAATTGCAATCACT | + |
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Preference number: 5 (lower is better) Translates to: VARVLLGKALFQGLS*PYVIQYMHSPIAIT Trigger: AGTGATTGCAATTGGGGAATGCATGTACTGGATCACATAAGGTCATGAAAGTCCTTGAAACAGAGCCTTGCCAAGCAGAACCCTTGCCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS TCA 90 bp | AAGAATATCATTTCATGTCAGATGGGTAGACTGTATCGAATACCATaGGTGGCAAGGGTTCTGCTTGGCAAGGCTCTGTTTCAAGGACTT | + |
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Preference number: 5 (lower is better) Translates to: KNIISCQMGRLYRIP*VARVLLGKALFQGL Trigger: AAGTCCTTGAAACAGAGCCTTGCCAAGCAGAACCCTTGCCACTCATGGTATTCGATACAGTCTACCCATCTGACATGAAATGATATTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS CCA 90 bp | ATATCATTTCATGTCAGATGGGTAGACTGTATCGAATACCATGAGTaGCAAGGGTTCTGCTTGGCAAGGCTCTGTTTCAAGGACTTTCAT | + |
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Preference number: 5 (lower is better) Translates to: ISFHVRWVDCIEYHE*QGFCLARLCFKDFH Trigger: ATGAAAGTCCTTGAAACAGAGCCTTGCCAAGCAGAACCCTTGCCACTCATGGTATTCGATACAGTCTACCCATCTGACATGAAATGATAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS TCA 90 bp | CTGGTATTCAGGAACAGCCCGTCTCCAAACAGGAATTTGTTGACCTaGACTTCAAAATTAACTCTTCGCTTATTTAGCAGTCTAATCCAC | + |
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Preference number: 5 (lower is better) Translates to: LVFRNSPSPNRNLLT*TSKLTLRLFSSLIH Trigger: GTGGATTAGACTGCTAAATAAGCGAAGAGTTAATTTTGAAGTTCAGGTCAACAAATTCCTGTTTGGAGACGGGCTGTTCCTGAATACCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS GCA 90 bp | AAAATTAGGCACAGTACCTATTTCAGAAGAATGGATGCAATTCTATaGTTGACTGGCTATGAAAGTTCTAAGGAGAGGAATAGGGAAACA | + |
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Preference number: 5 (lower is better) Translates to: KIRHSTYFRRMDAIL*LTGYESSKERNRET Trigger: TGTTTCCCTATTCCTCTCCTTAGAACTTTCATAGCCAGTCAAGCATAGAATTGCATCCATTCTTCTGAAATAGGTACTGTGCCTAATTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS TCA 72 bp | CACATGCTGCTGAGCTCACTTGGGGAAGGCCACCAGTaGCTGGAGACTCAGCTACTTCCAGGCGTTAAAAGC | + |
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Preference number: 6 (lower is better) Translates to: HMLLSSLGEGHQ*LETQLLPGVKS Trigger: GCTTTTAACGCCTGGAAGTAGCTGAGTCTCCAGTCACTGGTGGCCTTCCCCAAGTGAGCTCAGCAGCATGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS TCA 72 bp | CATCCTGGGATAGGAACACTAGCCTCTGGAGAGCAGTaGGGCCTACCAAACCTACACCAGTCAGCCCATATG | + |
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Preference number: 6 (lower is better) Translates to: HPGIGTLASGEQ*GLPNLHQSAHM Trigger: CATATGGGCTGACTGGTGTAGGTTTGGTAGGCCTCACTGCTCTCCAGAGGCTAGTGTTCCTATCCCAGGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS GCA 72 bp | CAGGGAGACCCAGGCAGGTCAGGGTCCTATAGTAAGTaGACAGTCAGGTTTTGGCTATGGACTTTTTCAATG | + |
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Preference number: 6 (lower is better) Translates to: QGDPGRSGSYSK*TVRFWLWTFSM Trigger: CATTGAAAAAGTCCATAGCCAAAACCTGACTGTGCACTTACTATAGGACCCTGACCTGCCTGGGTCTCCCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS GCA 72 bp | AGGAATAGGGAAACAGTCAAGCTAAGCCAGCAGCTTTaGAGAGAGGAATCCCACTGGAGCCAGCACAGTATT | + |
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Preference number: 6 (lower is better) Translates to: RNRETVKLSQQL*REESHWSQHSI Trigger: AATACTGTGCTGGCTCCAGTGGGATTCCTCTCTGCAAAGCTGCTGGCTTAGCTTGACTGTTTCCCTATTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS TCA 72 bp | CACTGGAGTACAAAGACAAAACATGGTTCCTGTCTGTaGGGAGCTTACAAGCTAGTGGGGAGAGACTTGGGT | + |
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Preference number: 6 (lower is better) Translates to: HWSTKTKHGSCL*GAYKLVGRDLG Trigger: ACCCAAGTCTCTCCCCACTAGCTTGTAAGCTCCTCACAGACAGGAACCATGTTTTGTCTTTGTACTCCAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS TCA 72 bp | GTGATGCCACTTTCATTTAGGGGCTGGAATGGGATTTaGGGGCCCTCTCTTCTCTCTAGGCTTTCTGAAGTA | + |
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Preference number: 6 (lower is better) Translates to: VMPLSFRGWNGI*GPSLLSRLSEV Trigger: TACTTCAGAAAGCCTAGAGAGAAGAGAGGGCCCTCAAATCCCATTCCAGCCCCTAAATGAAAGTGGCATCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS TCA 72 bp | AGGCCCTACATAGCTATGAGAGGGAGACCAGGAGACTaGATGTGCCTGGCAATAGCTATCTTCCATAGGAAT | + |
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Preference number: 6 (lower is better) Translates to: RPYIAMRGRPGD*MCLAIAIFHRN Trigger: ATTCCTATGGAAGATAGCTATTGCCAGGCACATTCAGTCTCCTGGTCTCCCTCTCATAGCTATGTAGGGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS CCA 72 bp | GGAAGGGAAGCGTCTGCTGAAAAGGATTTTCTTCCCTaGGCTAGAATTACATCCTTGAGGCCTTCCTACATG | + |
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Preference number: 6 (lower is better) Translates to: GREASAEKDFLP*ARITSLRPSYM Trigger: CATGTAGGAAGGCCTCAAGGATGTAATTCTAGCCCAGGGAAGAAAATCCTTTTCAGCAGACGCTTCCCTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS CAA 90 bp | GCGTCTGCTGAAAAGGATTTTCTTCCCTGGGCTAGAATTACATCCTaGAGGCCTTCCTACATGTTCCAAGGAGGCCAAATCTCTTGTGGT | + |
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Preference number: 6 (lower is better) Translates to: ASAEKDFLPWARITS*RPSYMFQGGQISCG Trigger: ACCACAAGAGATTTGGCCTCCTTGGAACATGTAGGAAGGCCTCAAGGATGTAATTCTAGCCCAGGGAAGAAAATCCTTTTCAGCAGACGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS GCA 72 bp | GTAGACTGTATCGAATACCATGAGTGGCAAGGGTTCTaGTTGGCAAGGCTCTGTTTCAAGGACTTTCATGAC | + |
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Preference number: 6 (lower is better) Translates to: VDCIEYHEWQGF*LARLCFKDFHD Trigger: GTCATGAAAGTCCTTGAAACAGAGCCTTGCCAAGCAGAACCCTTGCCACTCATGGTATTCGATACAGTCTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS CAA 72 bp | GACTGTATCGAATACCATGAGTGGCAAGGGTTCTGCTaGGCAAGGCTCTGTTTCAAGGACTTTCATGACCTT | + |
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Preference number: 6 (lower is better) Translates to: DCIEYHEWQGFC*ARLCFKDFHDL Trigger: AAGGTCATGAAAGTCCTTGAAACAGAGCCTTGCCAAGCAGAACCCTTGCCACTCATGGTATTCGATACAGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS TCA 72 bp | ATTTCATGTCAGATGGGTAGACTGTATCGAATACCATaGGTGGCAAGGGTTCTGCTTGGCAAGGCTCTGTTT | + |
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Preference number: 6 (lower is better) Translates to: ISCQMGRLYRIP*VARVLLGKALF Trigger: AAACAGAGCCTTGCCAAGCAGAACCCTTGCCACTCATGGTATTCGATACAGTCTACCCATCTGACATGAAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS CCA 72 bp | ACTGTATCGAATACCATGAGTGGCAAGGGTTCTGCTTaGCAAGGCTCTGTTTCAAGGACTTTCATGACCTTA | + |
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Preference number: 6 (lower is better) Translates to: TVSNTMSGKGSA*QGSVSRTFMTL Trigger: TAAGGTCATGAAAGTCCTTGAAACAGAGCCTTGCCAAGCAGAACCCTTGCCACTCATGGTATTCGATACAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS CAA 72 bp | GAAAAGGATTTTCTTCCCTGGGCTAGAATTACATCCTaGAGGCCTTCCTACATGTTCCAAGGAGGCCAAATC | + |
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Preference number: 6 (lower is better) Translates to: EKDFLPWARITS*RPSYMFQGGQI Trigger: GATTTGGCCTCCTTGGAACATGTAGGAAGGCCTCAAGGATGTAATTCTAGCCCAGGGAAGAAAATCCTTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS TCA 72 bp | AAAAGGATTTTCTTCCCTGGGCTAGAATTACATCCTTaGGGCCTTCCTACATGTTCCAAGGAGGCCAAATCT | + |
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Preference number: 6 (lower is better) Translates to: KRIFFPGLELHP*GLPTCSKEAKS Trigger: AGATTTGGCCTCCTTGGAACATGTAGGAAGGCCTCAAGGATGTAATTCTAGCCCAGGGAAGAAAATCCTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS TCA 72 bp | GCAAGGCTCTGTTTCAAGGACTTTCATGACCTTATGTaGTCCAGTACATGCATTCCCCAATTGCAATCACTG | + |
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Preference number: 6 (lower is better) Translates to: ARLCFKDFHDLM*SSTCIPQLQSL Trigger: CAGTGATTGCAATTGGGGAATGCATGTACTGGATCACATAAGGTCATGAAAGTCCTTGAAACAGAGCCTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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| CDS TCA 72 bp | GTTCTGCTTGGCAAGGCTCTGTTTCAAGGACTTTCATaGCCTTATGTGATCCAGTACATGCATTCCCCAATT | + |
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Preference number: 6 (lower is better) Translates to: VLLGKALFQGLS*PYVIQYMHSPI Trigger: AATTGGGGAATGCATGTACTGGATCACATAAGGTCATGAAAGTCCTTGAAACAGAGCCTTGCCAAGCAGAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000623342.1 |
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