Pregenerated sensors for SNAPC1 (Homo sapiens)
Ensembl gene IDs: ENSG00000023608Ensembl transcript IDs: ENST00000216294.5
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TTACAGGCATGCAACCCAAACTTTAAATCCCTTAATAATACCATGCTGGAAAACGATATGGTCTGCTATTaGCAGCAATTCAAACAACAT | + |
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Preference number: 2 (lower is better) Translates to: LQACNPNFKSLNNTMLENDMVCY*QQFKQH Trigger: ATGTTGTTTGAATTGCTGCCAATAGCAGACCATATC...GTTTTCCAGCATGGTATTATTAAGGGATTTAAAGTTTGGGTTGCATGCCTGTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| 3UTR-3UTR CCA 90 bp | TTACAGGCATGCAACCCAAACTTTAAATCCCTTAATAATACCATGCTGGAAAACGCAATTCAAACAACATaGCTCAAGCAATCTCTATTA | + |
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Preference number: 2 (lower is better) Translates to: LQACNPNFKSLNNTMLENAIQTT*LKQSLL Trigger: TAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGC...GTTTTCCAGCATGGTATTATTAAGGGATTTAAAGTTTGGGTTGCATGCCTGTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| 3UTR GCA 72 bp | GCACGATCTCGGCTCACTGGGTTCACACCATTCTCCTaGCTCAGCTTCCCGAGTAGCTGGGATTACAGGCGC | + |
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Preference number: 3 (lower is better) Translates to: ARSRLTGFTPFS*LSFPSSWDYRR Trigger: GCGCCTGTAATCCCAGCTACTCGGGAAGCTGAGGCAGGAGAATGGTGTGAACCCAGTGAGCCGAGATCGTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| 3UTR GCA 72 bp | AAACAGTTGAGCCAACAACATGATAGGGATATGGTCTaGTATTGGCAGCAATTCAAACAACATGGCTCAAGC | + |
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Preference number: 3 (lower is better) Translates to: KQLSQQHDRDMV*YWQQFKQHGSS Trigger: GCTTGAGCCATGTTGTTTGAATTGCTGCCAATAGCAGACCATATCCCTATCATGTTGTTGGCTCAACTGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR CCA 90 bp | TTACAGGCATGCAACCCAAACTTTAAATCCCTTAATAATACCATGCTGGAAAACCGGGAGGAGTCCCCATaGCACCCGAAGCCCGCACGC | + |
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Preference number: 4 (lower is better) Translates to: LQACNPNFKSLNNTMLENREESP*HPKPAR Trigger: GCGTGCGGGCTTCGGGTGCCATGGGGACTCCTCCCG...GTTTTCCAGCATGGTATTATTAAGGGATTTAAAGTTTGGGTTGCATGCCTGTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR GCA 90 bp | GCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAATGTCTGGAACAAGAAGCCTCGCAGTCGGTCTaGAGGCCGGGAGGAGTCCCC | + |
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Preference number: 4 (lower is better) Translates to: AIQTTWLKQSLLKCLEQEASQSV*RPGGVP Trigger: GGGGACTCCTCCCGGCCTGCAGACCGACTGCGAGGC...TTCTTGTTCCAGACATTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR TCA 90 bp | GCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAATGTCTGGAACAAGAATCTCCTGGAAGCGGCTaGGCAGCGCCTCGCAGTCGG | + |
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Preference number: 4 (lower is better) Translates to: AIQTTWLKQSLLKCLEQESPGSG*AAPRSR Trigger: CCGACTGCGAGGCGCTGCTCAGCCGCTTCCAGGAGA...TTCTTGTTCCAGACATTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR CCA 90 bp | GGTCTGCTATTGGCAGCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAAACACTGTCCGTCTCCTaGAAGCGGCTGAGCAGCGCC | + |
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Preference number: 4 (lower is better) Translates to: GLLLAAIQTTWLKQSLLKTLSVS*KRLSSA Trigger: GGCGCTGCTCAGCCGCTTCCAGGAGACGGACAGTGT...TTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGCTGCCAATAGCAGACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR CCA 90 bp | GCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAATGTCTGGAACAAGAAAGCTTCCCGAGTAGCTaGGATTACAGGCGCCCGCCA | + |
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Preference number: 4 (lower is better) Translates to: AIQTTWLKQSLLKCLEQESFPSS*DYRRPP Trigger: TGGCGGGCGCCTGTAATCCCAGCTACTCGGGAAGCT...TTCTTGTTCCAGACATTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR GCA 90 bp | TTACAGGCATGCAACCCAAACTTTAAATCCCTTAATAATACCATGCTGGAAAACTTCACACCATTCTCCTaGCTCAGCTTCCCGAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: LQACNPNFKSLNNTMLENFTPFS*LSFPSS Trigger: GCTACTCGGGAAGCTGAGGCAGGAGAATGGTGTGAA...GTTTTCCAGCATGGTATTATTAAGGGATTTAAAGTTTGGGTTGCATGCCTGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR TCA 90 bp | GGTCTGCTATTGGCAGCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAACATCCTTTATCAAGCTaGGGGCTTTATCTGGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: GLLLAAIQTTWLKQSLLKHPLSS*GLYLAW Trigger: CCAAGCCAGATAAAGCCCTCAGCTTGATAAAGGATG...TTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGCTGCCAATAGCAGACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR TCA 90 bp | TTACAGGCATGCAACCCAAACTTTAAATCCCTTAATAATACCATGCTGGAAAACACAAAGCACCAACTCTaGTCTGGAAGGTGTATGGAG | + |
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Preference number: 4 (lower is better) Translates to: LQACNPNFKSLNNTMLENTKHQL*SGRCME Trigger: CTCCATACACCTTCCAGATCAGAGTTGGTGCTTTGT...GTTTTCCAGCATGGTATTATTAAGGGATTTAAAGTTTGGGTTGCATGCCTGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR TCA 90 bp | GGTCTGCTATTGGCAGCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAACCTTCAGGGCAACTCTaGTCTTTTGTTTTGGTTGAC | + |
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Preference number: 4 (lower is better) Translates to: GLLLAAIQTTWLKQSLLKPSGQL*SFVLVD Trigger: GTCAACCAAAACAAAAGATCAGAGTTGCCCTGAAGG...TTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGCTGCCAATAGCAGACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR TCA 90 bp | GGTCTGCTATTGGCAGCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAATCTTTGTGCCACTGCTaGTGCTCCAAAACTATGTTC | + |
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Preference number: 4 (lower is better) Translates to: GLLLAAIQTTWLKQSLLKSLCHC*CSKTMF Trigger: GAACATAGTTTTGGAGCATCAGCAGTGGCACAAAGA...TTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGCTGCCAATAGCAGACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR TCA 90 bp | TTACAGGCATGCAACCCAAACTTTAAATCCCTTAATAATACCATGCTGGAAAACCAGAAGAGTCGAGTTTaGCTTGACGATGCCTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: LQACNPNFKSLNNTMLENQKSRV*LDDAFL Trigger: CAAGAAGGCATCGTCAAGTCAAACTCGACTCTTCTG...GTTTTCCAGCATGGTATTATTAAGGGATTTAAAGTTTGGGTTGCATGCCTGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR TCA 90 bp | GCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAATGTCTGGAACAAGAAGCTTTGACTTGCCCTTaGCCAGATGCAGAATCAGAG | + |
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Preference number: 4 (lower is better) Translates to: AIQTTWLKQSLLKCLEQEALTCP*PDAESE Trigger: CTCTGATTCTGCATCTGGTCAAGGGCAAGTCAAAGC...TTCTTGTTCCAGACATTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR TCA 90 bp | TTACAGGCATGCAACCCAAACTTTAAATCCCTTAATAATACCATGCTGGAAAACGGCATTGCTGTAAAGTaGAATGCTCTGTCTAGTCGT | + |
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Preference number: 4 (lower is better) Translates to: LQACNPNFKSLNNTMLENGIAVK*NALSSR Trigger: ACGACTAGACAGAGCATTTCACTTTACAGCAATGCC...GTTTTCCAGCATGGTATTATTAAGGGATTTAAAGTTTGGGTTGCATGCCTGTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR TCA 90 bp | TTACAGGCATGCAACCCAAACTTTAAATCCCTTAATAATACCATGCTGGAAAACGAGTCGAGTTTGACTTaGCGATGCCTTCTTGATTTG | + |
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Preference number: 4 (lower is better) Translates to: LQACNPNFKSLNNTMLENESSLT*RCLLDL Trigger: CAAATCAAGAAGGCATCGTCAAGTCAAACTCGACTC...GTTTTCCAGCATGGTATTATTAAGGGATTTAAAGTTTGGGTTGCATGCCTGTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR GCA 90 bp | TTACAGGCATGCAACCCAAACTTTAAATCCCTTAATAATACCATGCTGGAAAACTCTCCTCTTCTTGGATaGAGTGAACTCTGTTCCACT | + |
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Preference number: 4 (lower is better) Translates to: LQACNPNFKSLNNTMLENSPLLG*SELCST Trigger: AGTGGAACAGAGTTCACTGCATCCAAGAAGAGGAGA...GTTTTCCAGCATGGTATTATTAAGGGATTTAAAGTTTGGGTTGCATGCCTGTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR GCA 90 bp | GGTCTGCTATTGGCAGCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAACTGGGATTACAGGCATaGAACCCAAACTTTAAATCC | + |
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Preference number: 4 (lower is better) Translates to: GLLLAAIQTTWLKQSLLKLGLQA*NPNFKS Trigger: GGATTTAAAGTTTGGGTTGCATGCCTGTAATCCCAG...TTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGCTGCCAATAGCAGACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR CCA 90 bp | TTACAGGCATGCAACCCAAACTTTAAATCCCTTAATAATACCATGCTGGAAAACGCACCAACTCTGATCTaGAAGGTGTATGGAGGTAAA | + |
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Preference number: 4 (lower is better) Translates to: LQACNPNFKSLNNTMLENAPTLI*KVYGGK Trigger: TTTACCTCCATACACCTTCCAGATCAGAGTTGGTGC...GTTTTCCAGCATGGTATTATTAAGGGATTTAAAGTTTGGGTTGCATGCCTGTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR TCA 90 bp | GGTCTGCTATTGGCAGCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAATTTCTTCATCCTATATaGCAGCAATTTGGGCATTGC | + |
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Preference number: 4 (lower is better) Translates to: GLLLAAIQTTWLKQSLLKFLHPI*QQFGHC Trigger: GCAATGCCCAAATTGCTGTCATATAGGATGAAGAAA...TTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGCTGCCAATAGCAGACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR TCA 90 bp | GCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAATGTCTGGAACAAGAATTGACGATGCCTTCTTaGTTTGGATGCCTGTATGAC | + |
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Preference number: 4 (lower is better) Translates to: AIQTTWLKQSLLKCLEQELTMPS*FGCLYD Trigger: GTCATACAGGCATCCAAATCAAGAAGGCATCGTCAA...TTCTTGTTCCAGACATTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR GCA 90 bp | GGTCTGCTATTGGCAGCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAAGATAGGGATATGGTCTaGTATTGGCAGCAATTCAAA | + |
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Preference number: 4 (lower is better) Translates to: GLLLAAIQTTWLKQSLLKDRDMV*YWQQFK Trigger: TTTGAATTGCTGCCAATAGCAGACCATATCCCTATC...TTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGCTGCCAATAGCAGACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR CCA 90 bp | GGTCTGCTATTGGCAGCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAACATCACACGATCACTTaGGTCCTTAAATTCTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: GLLLAAIQTTWLKQSLLKHHTIT*VLKFFC Trigger: ACAGAAGAATTTAAGGACCCAAGTGATCGTGTGATG...TTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGCTGCCAATAGCAGACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR TCA 90 bp | GCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAATGTCTGGAACAAGAAATTTGGATGCCTGTATaGCAACTGAAAAGGCCTTTG | + |
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Preference number: 4 (lower is better) Translates to: AIQTTWLKQSLLKCLEQEIWMPV*QLKRPL Trigger: CAAAGGCCTTTTCAGTTGTCATACAGGCATCCAAAT...TTCTTGTTCCAGACATTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR TCA 90 bp | TTACAGGCATGCAACCCAAACTTTAAATCCCTTAATAATACCATGCTGGAAAACAAGTATAATCAACTGTaGAACAGGTTAAGGCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: LQACNPNFKSLNNTMLENKYNQL*NRLRLG Trigger: ACCCAGCCTTAACCTGTTTCACAGTTGATTATACTT...GTTTTCCAGCATGGTATTATTAAGGGATTTAAAGTTTGGGTTGCATGCCTGTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR GCA 90 bp | GGTCTGCTATTGGCAGCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAAAGACATCTTCCTTCCTaGTGGTTTCAATCTTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: GLLLAAIQTTWLKQSLLKRHLPS*WFQSFF Trigger: AAAGAAAGATTGAAACCAGCAGGAAGGAAGATGTCT...TTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGCTGCCAATAGCAGACC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR CCA 90 bp | GGTCTGCTATTGGCAGCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAATCTGATCTTTTGTTTTaGTTGACACAGTTGGGTATT | + |
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Preference number: 4 (lower is better) Translates to: GLLLAAIQTTWLKQSLLKSDLLF*LTQLGI Trigger: AATACCCAACTGTGTCAACCAAAACAAAAGATCAGA...TTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGCTGCCAATAGCAGACC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR CCA 90 bp | TTACAGGCATGCAACCCAAACTTTAAATCCCTTAATAATACCATGCTGGAAAACGGGCTTTATCTGGCTTaGACTTATCAACTGAAATTA | + |
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Preference number: 4 (lower is better) Translates to: LQACNPNFKSLNNTMLENGLYLA*TYQLKL Trigger: TAATTTCAGTTGATAAGTCCAAGCCAGATAAAGCCC...GTTTTCCAGCATGGTATTATTAAGGGATTTAAAGTTTGGGTTGCATGCCTGTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR CCA 90 bp | GCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAATGTCTGGAACAAGAAAACATGATAGGGATATaGTCTGCTATTGGCAGCAAT | + |
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Preference number: 4 (lower is better) Translates to: AIQTTWLKQSLLKCLEQENMIGI*SAIGSN Trigger: ATTGCTGCCAATAGCAGACCATATCCCTATCATGTT...TTCTTGTTCCAGACATTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS GCA 90 bp | CTGTCCGTCTCCTGGAAGCGGCTGAGCAGCGCCTCGCAGTCGGTCTaGAGGCCGGGAGGAGTCCCCATGGCACCCGAAGCCCGCACGCCT | + |
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Preference number: 5 (lower is better) Translates to: LSVSWKRLSSASQSV*RPGGVPMAPEARTP Trigger: AGGCGTGCGGGCTTCGGGTGCCATGGGGACTCCTCCCGGCCTGCAGACCGACTGCGAGGCGCTGCTCAGCCGCTTCCAGGAGACGGACAG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR CAA 90 bp | GGTCTGCTATTGGCAGCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAACCTAGTTGCTTTGACTaGCCCTTGACCAGATGCAGA | + |
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Preference number: 5 (lower is better) Translates to: GLLLAAIQTTWLKQSLLKPSCFD*PLTRCR Trigger: TCTGCATCTGGTCAAGGGCAAGTCAAAGCAACTAGG...TTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGCTGCCAATAGCAGACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR CAA 90 bp | TTACAGGCATGCAACCCAAACTTTAAATCCCTTAATAATACCATGCTGGAAAACCGATGCCTTCTTGATTaGGATGCCTGTATGACAACT | + |
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Preference number: 5 (lower is better) Translates to: LQACNPNFKSLNNTMLENRCLLD*DACMTT Trigger: AGTTGTCATACAGGCATCCAAATCAAGAAGGCATCG...GTTTTCCAGCATGGTATTATTAAGGGATTTAAAGTTTGGGTTGCATGCCTGTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR CAA 90 bp | GCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAATGTCTGGAACAAGAATGCTTTGACTTGCCCTaGACCAGATGCAGAATCAGA | + |
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Preference number: 5 (lower is better) Translates to: AIQTTWLKQSLLKCLEQECFDLP*TRCRIR Trigger: TCTGATTCTGCATCTGGTCAAGGGCAAGTCAAAGCA...TTCTTGTTCCAGACATTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR CAA 90 bp | TTACAGGCATGCAACCCAAACTTTAAATCCCTTAATAATACCATGCTGGAAAACTGTTTTCTCCTCTTCTaGGATGCAGTGAACTCTGTT | + |
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Preference number: 5 (lower is better) Translates to: LQACNPNFKSLNNTMLENCFLLF*DAVNSV Trigger: AACAGAGTTCACTGCATCCAAGAAGAGGAGAAAACA...GTTTTCCAGCATGGTATTATTAAGGGATTTAAAGTTTGGGTTGCATGCCTGTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR CAA 90 bp | GCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAATGTCTGGAACAAGAAGGATATGGTCTGCTATaGGCAGCAATTCAAACAACA | + |
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Preference number: 5 (lower is better) Translates to: AIQTTWLKQSLLKCLEQEGYGLL*AAIQTT Trigger: TGTTGTTTGAATTGCTGCCAATAGCAGACCATATCC...TTCTTGTTCCAGACATTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR CAA 90 bp | GCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAATGTCTGGAACAAGAAAGGGCTTTATCTGGCTaGGACTTATCAACTGAAATT | + |
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Preference number: 5 (lower is better) Translates to: AIQTTWLKQSLLKCLEQERALSG*DLSTEI Trigger: AATTTCAGTTGATAAGTCCAAGCCAGATAAAGCCCT...TTCTTGTTCCAGACATTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS-3UTR CAA 90 bp | GCAATTCAAACAACATGGCTCAAGCAATCTCTATTAAAATGTCTGGAACAAGAATGTATATTCTGCACATaGCCTTTGTTTCTGAGAGAC | + |
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Preference number: 5 (lower is better) Translates to: AIQTTWLKQSLLKCLEQECIFCT*PLFLRD Trigger: GTCTCTCAGAAACAAAGGCAATGTGCAGAATATACA...TTCTTGTTCCAGACATTTTAATAGAGATTGCTTGAGCCATGTTGTTTGAATTGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS TCA 90 bp | ATCCTTTATCAAGCTGAGGGCTTTATCTGGCTTGGACTTATCAACTaGAATTACATGTTTCATGTTCTGATAATGATCATGAACATTCAG | + |
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Preference number: 5 (lower is better) Translates to: ILYQAEGFIWLGLIN*NYMFHVLIMIMNIQ Trigger: CTGAATGTTCATGATCATTATCAGAACATGAAACATGTAATTTCAGTTGATAAGTCCAAGCCAGATAAAGCCCTCAGCTTGATAAAGGAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS GCA 72 bp | TCCTGGAAGCGGCTGAGCAGCGCCTCGCAGTCGGTCTaGAGGCCGGGAGGAGTCCCCATGGCACCCGAAGCC | + |
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Preference number: 6 (lower is better) Translates to: SWKRLSSASQSV*RPGGVPMAPEA Trigger: GGCTTCGGGTGCCATGGGGACTCCTCCCGGCCTGCAGACCGACTGCGAGGCGCTGCTCAGCCGCTTCCAGGA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS CCA 72 bp | TCCGTGAAGTCCTCGAAGCGTACACTGTCCGTCTCCTaGAAGCGGCTGAGCAGCGCCTCGCAGTCGGTCTGC | + |
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Preference number: 6 (lower is better) Translates to: SVKSSKRTLSVS*KRLSSASQSVC Trigger: GCAGACCGACTGCGAGGCGCTGCTCAGCCGCTTCCAGGAGACGGACAGTGTACGCTTCGAGGACTTCACGGA 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS TCA 72 bp | GACCAGATGCAGAATCAGAGTCAGAAGAGTCGAGTTTaGCTTGACGATGCCTTCTTGATTTGGATGCCTGTA | + |
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Preference number: 6 (lower is better) Translates to: DQMQNQSQKSRV*LDDAFLIWMPV Trigger: TACAGGCATCCAAATCAAGAAGGCATCGTCAAGTCAAACTCGACTCTTCTGACTCTGATTCTGCATCTGGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS TCA 72 bp | GATGCAGAATCAGAGTCAGAAGAGTCGAGTTTGACTTaGCGATGCCTTCTTGATTTGGATGCCTGTATGACA | + |
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Preference number: 6 (lower is better) Translates to: DAESESEESSLT*RCLLDLDACMT Trigger: TGTCATACAGGCATCCAAATCAAGAAGGCATCGTCAAGTCAAACTCGACTCTTCTGACTCTGATTCTGCATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS CAA 72 bp | AAATCATCCTTTATCAAGCTGAGGGCTTTATCTGGCTaGGACTTATCAACTGAAATTACATGTTTCATGTTC | + |
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Preference number: 6 (lower is better) Translates to: KSSFIKLRALSG*DLSTEITCFMF Trigger: GAACATGAAACATGTAATTTCAGTTGATAAGTCCAAGCCAGATAAAGCCCTCAGCTTGATAAAGGATGATTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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| CDS TCA 72 bp | TTTAAGGATGGATTCTTTCTGTCTTTGTGCCACTGCTaGTGCTCCAAAACTATGTTCTTAATATTGTCAAAA | + |
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Preference number: 6 (lower is better) Translates to: FKDGFFLSLCHC*CSKTMFLILSK Trigger: TTTTGACAATATTAAGAACATAGTTTTGGAGCATCAGCAGTGGCACAAAGACAGAAAGAATCCATCCTTAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000216294.5 |
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