RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SMPD4 (Homo sapiens)

Ensembl gene IDs: ENSG00000136699

Ensembl transcript IDs: ENST00000409031.5, ENST00000412570.5, ENST00000433118.5, ENST00000454468.5, ENST00000680810.1, ENST00000680987.1, ENST00000681660.1

Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGGACAGCAGCCCGTTTaGACTCCTCCAGGGGGCTGG +
Preference number: 2 (lower is better)
Translates to: AQGECELPELRFAEPEYLGQQPV*TPPGGW
Trigger: CCAGCCCCCTGGAGGAGTTCAAACGGGCTGCTGTCC...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680987.1
3UTR-3UTR CCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGGTATGGCTGGTGTCCTaGGAGGTGGTGAGGGGCTGG +
Preference number: 2 (lower is better)
Translates to: GECELPELRFAEPEYLAQVWLVS*EVVRGW
Trigger: CCAGCCCCTCACCACCTCCCAGGACACCAGCCATAC...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000412570.5
ENST00000454468.5
3UTR-3UTR GCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGTGGCAGCTACTCCTTTaGTGGGGCCCACCTGCCTTC +
Preference number: 2 (lower is better)
Translates to: GECELPELRFAEPEYLAQWQLLL*WGPPAF
Trigger: GAAGGCAGGTGGGCCCCAGCAAAGGAGTAGCTGCCA...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
3UTR-3UTR GCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGCAATGGCTTGGGGTCTaGGGTGAAGCCCCTGGGCTC +
Preference number: 2 (lower is better)
Translates to: AQGECELPELRFAEPEYLQWLGV*GEAPGL
Trigger: GAGCCCAGGGGCTTCACCGCAGACCCCAAGCCATTG...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
3UTR-3UTR CCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGTATGGCTGGTGTCCTaGGAGGTGGTGAGGGGCTGG +
Preference number: 2 (lower is better)
Translates to: AQGECELPELRFAEPEYLVWLVS*EVVRGW
Trigger: CCAGCCCCTCACCACCTCCCAGGACACCAGCCATAC...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000412570.5
ENST00000454468.5
3UTR-3UTR TCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGACAGAGCGTAGCTGTTaGGCCCTGGCAGCTACTCCT +
Preference number: 2 (lower is better)
Translates to: GECELPELRFAEPEYLAQTERSC*ALAATP
Trigger: AGGAGTAGCTGCCAGGGCTCAACAGCTACGCTCTGT...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
3UTR-3UTR GCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGTGGCAGCTACTCCTTTaGTGGGGCCCACCTGCCTTC +
Preference number: 2 (lower is better)
Translates to: AQGECELPELRFAEPEYLWQLLL*WGPPAF
Trigger: GAAGGCAGGTGGGCCCCAGCAAAGGAGTAGCTGCCA...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
3UTR-3UTR GCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGAACACCATGAGCGCGTaGTTGGGGCTGACCAGGTCT +
Preference number: 2 (lower is better)
Translates to: GECELPELRFAEPEYLAQNTMSA*LGLTRS
Trigger: AGACCTGGTCAGCCCCAAGCACGCGCTCATGGTGTT...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
3UTR-3UTR TCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGACAGAGCGTAGCTGTTaGGCCCTGGCAGCTACTCCT +
Preference number: 2 (lower is better)
Translates to: AQGECELPELRFAEPEYLTERSC*ALAATP
Trigger: AGGAGTAGCTGCCAGGGCTCAACAGCTACGCTCTGT...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
3UTR-3UTR TCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGGAACGCCCCTCACAGTaGAGAATCAGGACAGCCACT +
Preference number: 2 (lower is better)
Translates to: GECELPELRFAEPEYLAQERPSQ*RIRTAT
Trigger: AGTGGCTGTCCTGATTCTTCACTGTGAGGGGCGTTC...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
3UTR-3UTR GCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGAACACCATGAGCGCGTaGTTGGGGCTGACCAGGTCT +
Preference number: 2 (lower is better)
Translates to: AQGECELPELRFAEPEYLNTMSA*LGLTRS
Trigger: AGACCTGGTCAGCCCCAAGCACGCGCTCATGGTGTT...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
3UTR-3UTR GCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGGCGTGAACGACTCCTaGTCCTCATCCTGGACACAG +
Preference number: 2 (lower is better)
Translates to: AQGECELPELRFAEPEYLGVNDS*SSSWTQ
Trigger: CTGTGTCCAGGATGAGGAGCAGGAGTCGTTCACGCC...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000680987.1
3UTR-3UTR TCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGAACGCCCCTCACAGTaGAGAATCAGGACAGCCACT +
Preference number: 2 (lower is better)
Translates to: AQGECELPELRFAEPEYLERPSQ*RIRTAT
Trigger: AGTGGCTGTCCTGATTCTTCACTGTGAGGGGCGTTC...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
3UTR-3UTR TCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGACAGGAAGTGGCTTCTaGGTGATGAGGCTCAAGGCA +
Preference number: 2 (lower is better)
Translates to: GECELPELRFAEPEYLAQTGSGF*VMRLKA
Trigger: TGCCTTGAGCCTCATCACTCAGAAGCCACTTCCTGT...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000412570.5
ENST00000454468.5
3UTR-3UTR GCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGCTCCTGGACAAAGGGTaGCCATTTCTCCGACACACA +
Preference number: 2 (lower is better)
Translates to: GECELPELRFAEPEYLAQLLDKG*PFLRHT
Trigger: TGTGTGTCGGAGAAATGGGCACCCTTTGTCCAGGAG...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
3UTR-3UTR GCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGCCGAGACCATGTCAATaGATTCCAGCCTGGGCAACG +
Preference number: 2 (lower is better)
Translates to: AQGECELPELRFAEPEYLPRPCQ*IPAWAT
Trigger: CGTTGCCCAGGCTGGAATGCATTGACATGGTCTCGG...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000433118.5
3UTR-3UTR CCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGGAGGGACACAGGAAGTaGCTTCTGAGTGATGAGGCT +
Preference number: 2 (lower is better)
Translates to: GECELPELRFAEPEYLAQEGHRK*LLSDEA
Trigger: AGCCTCATCACTCAGAAGCCACTTCCTGTGTCCCTC...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000412570.5
ENST00000454468.5
3UTR-3UTR CCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGGCAGAACCTCCAGCTTaGCATGAGGGGACTGCATTT +
Preference number: 2 (lower is better)
Translates to: GECELPELRFAEPEYLAQAEPPA*HEGTAF
Trigger: AAATGCAGTCCCCTCATGCCAAGCTGGAGGTTCTGC...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000433118.5
ENST00000454468.5
3UTR-3UTR GCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGCTCCTGGACAAAGGGTaGCCATTTCTCCGACACACA +
Preference number: 2 (lower is better)
Translates to: AQGECELPELRFAEPEYLLLDKG*PFLRHT
Trigger: TGTGTGTCGGAGAAATGGGCACCCTTTGTCCAGGAG...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
3UTR-3UTR TCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGAGCTACTCAAGAGGCTaGGGCAGAAGAATCACTTCA +
Preference number: 2 (lower is better)
Translates to: AQGECELPELRFAEPEYLSYSRG*GRRITS
Trigger: TGAAGTGATTCTTCTGCCTCAGCCTCTTGAGTAGCT...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000433118.5
3UTR-3UTR CCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGAACCAACTTCATCATTaGGCCACCAGGGTCGAGAAA +
Preference number: 2 (lower is better)
Translates to: AQGECELPELRFAEPEYLNQLHH*ATRVEK
Trigger: TTTCTCGACCCTGGTGGCCCAATGATGAAGTTGGTT...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000412570.5
3UTR-3UTR CCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGAGAATCACTTCAATCTaGGAGGTGGAGATTGCAGTG +
Preference number: 2 (lower is better)
Translates to: GECELPELRFAEPEYLAQRITSI*EVEIAV
Trigger: CACTGCAATCTCCACCTCCCAGATTGAAGTGATTCT...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000433118.5
3UTR-3UTR CAA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGGGGACAGCAGCCCGTTaGAACTCCTCCAGGGGGCTG +
Preference number: 3 (lower is better)
Translates to: GECELPELRFAEPEYLAQGTAAR*NSSRGL
Trigger: CAGCCCCCTGGAGGAGTTCAAACGGGCTGCTGTCCC...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680987.1
3UTR-3UTR CAA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGGGACAGCAGCCCGTTaGAACTCCTCCAGGGGGCTG +
Preference number: 3 (lower is better)
Translates to: AQGECELPELRFAEPEYLGTAAR*NSSRGL
Trigger: CAGCCCCCTGGAGGAGTTCAAACGGGCTGCTGTCCC...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680987.1
3UTR-3UTR CAA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGAGGCGTGAACGACTCTaGGTAGGCGTGGAGGGCCTG +
Preference number: 3 (lower is better)
Translates to: GECELPELRFAEPEYLAQRRERL*VGVEGL
Trigger: CAGGCCCTCCACGCCTACCAAGAGTCGTTCACGCCT...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454468.5
3UTR-3UTR CAA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGGGAGTGAGACTCCATTaGGTAGGCGTGGAGGGCCTG +
Preference number: 3 (lower is better)
Translates to: GECELPELRFAEPEYLAQGVRLH*VGVEGL
Trigger: CAGGCCCTCCACGCCTACCAAATGGAGTCTCACTCC...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000433118.5
3UTR-3UTR CAA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGAAACCAACTTCATCATaGGGCCACCAGGGTCGAGAA +
Preference number: 3 (lower is better)
Translates to: GECELPELRFAEPEYLAQKPTSS*GHQGRE
Trigger: TTCTCGACCCTGGTGGCCCAATGATGAAGTTGGTTT...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000412570.5
CDS-3UTR TCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGGGACAGCAGCCCGTTTaGACTCCTCCAGGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: GECELPELRFAEPEYLAQGQQPV*TPPGGW
Trigger: CCAGCCCCCTGGAGGAGTTCAAACGGGCTGCTGTCC...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
CDS-3UTR GCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGCAATGGCTTGGGGTCTaGGGTGAAGCCCCTGGGCTC +
Preference number: 4 (lower is better)
Translates to: GECELPELRFAEPEYLAQQWLGV*GEAPGL
Trigger: GAGCCCAGGGGCTTCACCGCAGACCCCAAGCCATTG...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
CDS-3UTR GCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGGTGAACTGCCTGAGCTaGGCTTCGCTGAGCCGGAAT +
Preference number: 4 (lower is better)
Translates to: GECELPELRFAEPEYLAQVNCLS*ASLSRN
Trigger: ATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCAC...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
CDS-3UTR GCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGAAGGCGAGTGTGAACTaGCTGAGCTGCGCTTCGCTG +
Preference number: 4 (lower is better)
Translates to: GECELPELRFAEPEYLAQKASVN*LSCASL
Trigger: CAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTT...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
CDS-3UTR CCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGAGCCCATTGATGATCTaGTACCGCCCCAGGGGCGTA +
Preference number: 4 (lower is better)
Translates to: GECELPELRFAEPEYLAQSPLMI*YRPRGV
Trigger: TACGCCCCTGGGGCGGTACCAGATCATCAATGGGCT...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
CDS-3UTR GCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGTGAACTGCCTGAGCTaGGCTTCGCTGAGCCGGAAT +
Preference number: 4 (lower is better)
Translates to: AQGECELPELRFAEPEYLVNCLS*ASLSRN
Trigger: ATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCAC...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
CDS-3UTR GCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGAAGGCGAGTGTGAACTaGCTGAGCTGCGCTTCGCTG +
Preference number: 4 (lower is better)
Translates to: AQGECELPELRFAEPEYLKASVN*LSCASL
Trigger: CAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTT...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
CDS-3UTR GCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGCCGAGACCATGTCAATaGATTCCAGCCTGGGCAACG +
Preference number: 4 (lower is better)
Translates to: GECELPELRFAEPEYLAQPRPCQ*IPAWAT
Trigger: CGTTGCCCAGGCTGGAATGCATTGACATGGTCTCGG...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000433118.5
CDS-3UTR CCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGAGCCCATTGATGATCTaGTACCGCCCCAGGGGCGTA +
Preference number: 4 (lower is better)
Translates to: AQGECELPELRFAEPEYLSPLMI*YRPRGV
Trigger: TACGCCCCTGGGGCGGTACCAGATCATCAATGGGCT...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
CDS-3UTR TCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGACAGGAAGTGGCTTCTaGGTGATGAGGCTCAAGGCA +
Preference number: 4 (lower is better)
Translates to: AQGECELPELRFAEPEYLTGSGF*VMRLKA
Trigger: TGCCTTGAGCCTCATCACTCAGAAGCCACTTCCTGT...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000412570.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
CDS-3UTR GCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGGGTGTGCAGCTCCTTTaGTGGAAAGTCCTCAATGAC +
Preference number: 4 (lower is better)
Translates to: GECELPELRFAEPEYLAQGVQLL*WKVLND
Trigger: GTCATTGAGGACTTTCCAGCAAAGGAGCTGCACACC...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000680810.1
ENST00000680987.1
CDS-3UTR GCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGCATGGGAAGATGGTGTaGAGCTCCTTTGCTGGAAAG +
Preference number: 4 (lower is better)
Translates to: GECELPELRFAEPEYLAQHGKMV*SSFAGK
Trigger: CTTTCCAGCAAAGGAGCTGCACACCATCTTCCCATG...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000680810.1
ENST00000680987.1
CDS-3UTR CCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGAGGGACACAGGAAGTaGCTTCTGAGTGATGAGGCT +
Preference number: 4 (lower is better)
Translates to: AQGECELPELRFAEPEYLEGHRK*LLSDEA
Trigger: AGCCTCATCACTCAGAAGCCACTTCCTGTGTCCCTC...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000412570.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
CDS-3UTR CCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGTGTCCTGCAAATCTGTaGTTGATGGCAGACGACAGC +
Preference number: 4 (lower is better)
Translates to: GECELPELRFAEPEYLAQCPANL*LMADDS
Trigger: GCTGTCGTCTGCCATCAACCACAGATTTGCAGGACA...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
CDS-3UTR CCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCAGAACCTCCAGCTTaGCATGAGGGGACTGCATTT +
Preference number: 4 (lower is better)
Translates to: AQGECELPELRFAEPEYLAEPPA*HEGTAF
Trigger: AAATGCAGTCCCCTCATGCCAAGCTGGAGGTTCTGC...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
CDS-3UTR GCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGGTGTGCAGCTCCTTTaGTGGAAAGTCCTCAATGAC +
Preference number: 4 (lower is better)
Translates to: AQGECELPELRFAEPEYLGVQLL*WKVLND
Trigger: GTCATTGAGGACTTTCCAGCAAAGGAGCTGCACACC...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000680810.1
ENST00000680987.1
CDS-3UTR GCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGCATGGGAAGATGGTGTaGAGCTCCTTTGCTGGAAAG +
Preference number: 4 (lower is better)
Translates to: AQGECELPELRFAEPEYLHGKMV*SSFAGK
Trigger: CTTTCCAGCAAAGGAGCTGCACACCATCTTCCCATG...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000680810.1
ENST00000680987.1
CDS-3UTR GCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGCGAGGACACCATCTTTaGTGGAAAGTCCTCAATGAC +
Preference number: 4 (lower is better)
Translates to: GECELPELRFAEPEYLAQRGHHL*WKVLND
Trigger: GTCATTGAGGACTTTCCAGCAAAGATGGTGTCCTCG...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000412570.5
CDS-3UTR CCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGAACCAACTTCATCATTaGGCCACCAGGGTCGAGAAA +
Preference number: 4 (lower is better)
Translates to: GECELPELRFAEPEYLAQNQLHH*ATRVEK
Trigger: TTTCTCGACCCTGGTGGCCCAATGATGAAGTTGGTT...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000412570.5
ENST00000680810.1
ENST00000680987.1
CDS-3UTR CCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGTGTCCTGCAAATCTGTaGTTGATGGCAGACGACAGC +
Preference number: 4 (lower is better)
Translates to: AQGECELPELRFAEPEYLCPANL*LMADDS
Trigger: GCTGTCGTCTGCCATCAACCACAGATTTGCAGGACA...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
CDS-3UTR CCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGAGCAAAGGGTATGGCTaGTGTCCTTTGCTGGAAAGT +
Preference number: 4 (lower is better)
Translates to: GECELPELRFAEPEYLAQSKGYG*CPLLES
Trigger: ACTTTCCAGCAAAGGACACCAGCCATACCCTTTGCT...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000433118.5
CDS-3UTR GCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGATGGCTGGTGTCCTTTaGTGGAAAGTCCTCAATGAC +
Preference number: 4 (lower is better)
Translates to: AQGECELPELRFAEPEYLMAGVL*WKVLND
Trigger: GTCATTGAGGACTTTCCAGCAAAGGACACCAGCCAT...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000433118.5
CDS-3UTR GCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGATCATTGGGCCACTTTaGTGGAAAGTCCTCAATGAC +
Preference number: 4 (lower is better)
Translates to: AQGECELPELRFAEPEYLIIGPL*WKVLND
Trigger: GTCATTGAGGACTTTCCAGCAAAGTGGCCCAATGAT...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454468.5
CDS-3UTR CCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGAGAATCACTTCAATCTaGGAGGTGGAGATTGCAGTG +
Preference number: 4 (lower is better)
Translates to: AQGECELPELRFAEPEYLRITSI*EVEIAV
Trigger: CACTGCAATCTCCACCTCCCAGATTGAAGTGATTCT...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000433118.5
CDS-3UTR CCA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGATTGGGCCACTTTGCTaGAAAGTCCTCAATGACTTT +
Preference number: 4 (lower is better)
Translates to: GECELPELRFAEPEYLAQIGPLC*KVLNDF
Trigger: AAAGTCATTGAGGACTTTCCAGCAAAGTGGCCCAAT...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454468.5
CDS-3UTR CCA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGGACACCATCTTTGCTaGAAAGTCCTCAATGACTTT +
Preference number: 4 (lower is better)
Translates to: AQGECELPELRFAEPEYLGHHLC*KVLNDF
Trigger: AAAGTCATTGAGGACTTTCCAGCAAAGATGGTGTCC...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000412570.5
CDS TCA 90 bp TCCGCCATGCCACTCCCGGCTCCTAGAGCGCCGCTCAGCACACCGTaGGCGCCCAATAACTGTTGGGCTTCAATGACGCCGCGGAGGCGG +
Preference number: 5 (lower is better)
Translates to: SAMPLPAPRAPLSTP*APNNCWASMTPRRR
Trigger: CCGCCTCCGCGGCGTCATTGAAGCCCAACAGTTATTGGGCGCTCACGGTGTGCTGAGCGGCGCTCTAGGAGCCGGGAGTGGCATGGCGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000409031.5
CDS-3UTR CAA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGCTGTTGCCCAGGGACTaGGTAGGCGTGGAGGGCCTG +
Preference number: 5 (lower is better)
Translates to: GECELPELRFAEPEYLAQLLPRD*VGVEGL
Trigger: CAGGCCCTCCACGCCTACCAAGTCCCTGGGCAACAG...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000680987.1
CDS-3UTR CAA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGAGGCGTGAACGACTCTaGGTAGGCGTGGAGGGCCTG +
Preference number: 5 (lower is better)
Translates to: AQGECELPELRFAEPEYLRRERL*VGVEGL
Trigger: CAGGCCCTCCACGCCTACCAAGAGTCGTTCACGCCT...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000454468.5
ENST00000680810.1
CDS-3UTR CAA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGAACCTTCGCAGCCCATaGATGATCTGGTACCGCCCC +
Preference number: 5 (lower is better)
Translates to: GECELPELRFAEPEYLAQNLRSP*MIWYRP
Trigger: GGGGCGGTACCAGATCATCAATGGGCTGCGAAGGTT...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
CDS-3UTR CAA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGGAGTGAGACTCCATTaGGTAGGCGTGGAGGGCCTG +
Preference number: 5 (lower is better)
Translates to: AQGECELPELRFAEPEYLGVRLH*VGVEGL
Trigger: CAGGCCCTCCACGCCTACCAAATGGAGTCTCACTCC...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000433118.5
CDS-3UTR CAA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGAACCTTCGCAGCCCATaGATGATCTGGTACCGCCCC +
Preference number: 5 (lower is better)
Translates to: AQGECELPELRFAEPEYLNLRSP*MIWYRP
Trigger: GGGGCGGTACCAGATCATCAATGGGCTGCGAAGGTT...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000412570.5
ENST00000433118.5
ENST00000454468.5
ENST00000680810.1
ENST00000680987.1
CDS-3UTR CAA 90 bp GCCCAAGGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGAAACCAACTTCATCATaGGGCCACCAGGGTCGAGAA +
Preference number: 5 (lower is better)
Translates to: AQGECELPELRFAEPEYLKPTSS*GHQGRE
Trigger: TTCTCGACCCTGGTGGCCCAATGATGAAGTTGGTTT...CAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCCTTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000412570.5
ENST00000680810.1
ENST00000680987.1
CDS-3UTR CAA 90 bp GGCGAGTGTGAACTGCCTGAGCTGCGCTTCGCTGAGCCGGAATATCTGGCGCAGAAACCAACTTCATCATaGGGCCACTTTGCTGGAAAG +
Preference number: 5 (lower is better)
Translates to: GECELPELRFAEPEYLAQKPTSS*GHFAGK
Trigger: CTTTCCAGCAAAGTGGCCCAATGATGAAGTTGGTTT...CTGCGCCAGATATTCCGGCTCAGCGAAGCGCAGCTCAGGCAGTTCACACTCGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000454468.5
CDS TCA 72 bp CCACTCCCGGCTCCTAGAGCGCCGCTCAGCACACCGTaGGCGCCCAATAACTGTTGGGCTTCAATGACGCCG +
Preference number: 6 (lower is better)
Translates to: PLPAPRAPLSTP*APNNCWASMTP
Trigger: CGGCGTCATTGAAGCCCAACAGTTATTGGGCGCTCACGGTGTGCTGAGCGGCGCTCTAGGAGCCGGGAGTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000409031.5
CDS CCA 72 bp TTGAAAGAGGCATTTACCGAGCGCCCAATGTATGCCTaGCACTGGGCTGGGTGCTGCCACCTAAGCGAGCAC +
Preference number: 6 (lower is better)
Translates to: LKEAFTERPMYA*HWAGCCHLSEH
Trigger: GTGCTCGCTTAGGTGGCAGCACCCAGCCCAGTGCCAGGCATACATTGGGCGCTCGGTAAATGCCTCTTTCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000409031.5
CDS CAA 72 bp CAAAGGGTATGGCTGGTGTCCTGTAGTCCCAGCTACTaGGGACTGAGCCAGGAGAATCACTTGAAGCAGAGA +
Preference number: 6 (lower is better)
Translates to: QRVWLVSCSPSY*GLSQENHLKQR
Trigger: TCTCTGCTTCAAGTGATTCTCCTGGCTCAGTCCCAAGTAGCTGGGACTACAGGACACCAGCCATACCCTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000681660.1