Pregenerated sensors for SMN2 (Homo sapiens)
Ensembl gene IDs: ENSG00000205571, ENSG00000273772, ENSG00000277773Ensembl transcript IDs: ENST00000380742.8, ENST00000380743.9, ENST00000506734.5, ENST00000507458.2, ENST00000612446.4, ENST00000618251.4, ENST00000620650.4, ENST00000624634.3, ENST00000626847.2, ENST00000627341.2, ENST00000628642.2, ENST00000631104.2
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TCAAATTTTCTCAACTGCCTCACCACCGTGCTGGCCTCCCACCCCCACCTCAGTAAATTTCATTTCTCTTaGAAGGCCGAGGCGGGTGGA | + |
|
Preference number: 2 (lower is better) Translates to: SNFLNCLTTVLASHPHLSKFHFS*KAEAGG Trigger: TCCACCCGCCTCGGCCTTCCAAGAGAAATGAAATTT...ACTGAGGTGGGGGTGGGAGGCCAGCACGGTGGTGAGGCAGTTGAGAAAATTTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000506734.5 ENST00000631104.2 |
||
| 3UTR-3UTR CAA 90 bp | TCAAATTTTCTCAACTGCCTCACCACCGTGCTGGCCTCCCACCCCCACCTCAGTAAAATTTCATTTCTCTaGGAAGGCCGAGGCGGGTGG | + |
|
Preference number: 3 (lower is better) Translates to: SNFLNCLTTVLASHPHLSKISFL*EGRGGW Trigger: CCACCCGCCTCGGCCTTCCAAGAGAAATGAAATTTT...ACTGAGGTGGGGGTGGGAGGCCAGCACGGTGGTGAGGCAGTTGAGAAAATTTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000506734.5 ENST00000631104.2 |
||
| 3UTR GCA 72 bp | AACAGCCATGTCCACCAGTTAGATTCTGTAACATTTTaGCACATACGCCTCACATACATTTTGTTAAACCAT | + |
|
Preference number: 3 (lower is better) Translates to: NSHVHQLDSVTF*HIRLTYILLNH Trigger: ATGGTTTAACAAAATGTATGTGAGGCGTATGTGGCAAAATGTTACAGAATCTAACTGGTGGACATGGCTGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 10 transcripts: ENST00000380742.8 ENST00000380743.9 ENST00000506734.5 ENST00000612446.4 ENST00000618251.4 ENST00000624634.3 ENST00000626847.2 ENST00000627341.2 ENST00000628642.2 ENST00000631104.2 |
||
| CDS-3UTR GCA 90 bp | TCAAATTTTCTCAACTGCCTCACCACCGTGCTGGCCTCCCACCCCCACCTCAGTACTGCCTCACCACCGTaGTGGCCTCCCACCCCCACC | + |
|
Preference number: 4 (lower is better) Translates to: SNFLNCLTTVLASHPHLSTASPP*WPPTPT Trigger: GGTGGGGGTGGGAGGCCAGCACGGTGGTGAGGCAGT...ACTGAGGTGGGGGTGGGAGGCCAGCACGGTGGTGAGGCAGTTGAGAAAATTTGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 7 transcripts: ENST00000380742.8 ENST00000380743.9 ENST00000506734.5 ENST00000626847.2 ENST00000627341.2 ENST00000628642.2 ENST00000631104.2 |
||
| CDS-3UTR CCA 90 bp | TCAAATTTTCTCAACTGCCTCACCACCGTGCTGGCCTCCCACCCCCACCTCAGTGAAGGCCGAGGCGGGTaGATCACGGGGTCAGGAGAT | + |
|
Preference number: 4 (lower is better) Translates to: SNFLNCLTTVLASHPHLSEGRGG*ITGSGD Trigger: ATCTCCTGACCCCGTGATCCACCCGCCTCGGCCTTC...ACTGAGGTGGGGGTGGGAGGCCAGCACGGTGGTGAGGCAGTTGAGAAAATTTGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000506734.5 ENST00000631104.2 |
||
| CDS-3UTR CCA 90 bp | TCAAATTTTCTCAACTGCCTCACCACCGTGCTGGCCTCCCACCCCCACCTCAGTTCAGAATCATCGCTCTaGCCTGTGCCGCGCCGGAAC | + |
|
Preference number: 4 (lower is better) Translates to: SNFLNCLTTVLASHPHLSSESSL*PVPRRN Trigger: GTTCCGGCGCGGCACAGGCCAGAGCGATGATTCTGA...ACTGAGGTGGGGGTGGGAGGCCAGCACGGTGGTGAGGCAGTTGAGAAAATTTGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 7 transcripts: ENST00000380742.8 ENST00000380743.9 ENST00000506734.5 ENST00000626847.2 ENST00000627341.2 ENST00000628642.2 ENST00000631104.2 |
||
| CDS-3UTR CCA 90 bp | TCAAATTTTCTCAACTGCCTCACCACCGTGCTGGCCTCCCACCCCCACCTCAGTCAGCATGATAGTAAGTaGGGTGGTGGTGGTGGCGGT | + |
|
Preference number: 4 (lower is better) Translates to: SNFLNCLTTVLASHPHLSQHDSK*GGGGGG Trigger: ACCGCCACCACCACCACCCCACTTACTATCATGCTG...ACTGAGGTGGGGGTGGGAGGCCAGCACGGTGGTGAGGCAGTTGAGAAAATTTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000380743.9 ENST00000506734.5 ENST00000626847.2 ENST00000627341.2 ENST00000628642.2 ENST00000631104.2 |
||
| 3UTR CAA 72 bp | TCCCAACTACTCACGTGGGTGAGGCACGAGAACCGCTaGAACCCGGATAGCAGAGGTTGCAGTGAGCTGAGA | + |
|
Preference number: 4 (lower is better) Translates to: SQLLTWVRHENR*NPDSRGCSELR Trigger: TCTCAGCTCACTGCAACCTCTGCTATCCGGGTTCAAGCGGTTCTCGTGCCTCACCCACGTGAGTAGTTGGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000620650.4 |
||
| CDS-3UTR GCA 90 bp | ACGTGGGTGAGGCACGAGAACTGCTTGAACCCGGATAGCAGAGGTTGCAGTGAGCCGGATAGCAGAGGTTaGAGTGAGCTGAGATTGCAC | + |
|
Preference number: 4 (lower is better) Translates to: TWVRHENCLNPDSRGCSEPDSRG*SELRLH Trigger: GTGCAATCTCAGCTCACTGCAACCTCTGCTATCCGG...CTCACTGCAACCTCTGCTATCCGGGTTCAAGCAGTTCTCGTGCCTCACCCACGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507458.2 |
||
| 3UTR CAA 72 bp | TCCCAACTACTCACGTGGGTGAGGCACGAGAACTGCTaGAACCCGGATAGCAGAGGTTGCAGTGAGCTGAGA | + |
|
Preference number: 4 (lower is better) Translates to: SQLLTWVRHENC*NPDSRGCSELR Trigger: TCTCAGCTCACTGCAACCTCTGCTATCCGGGTTCAAGCAGTTCTCGTGCCTCACCCACGTGAGTAGTTGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507458.2 |
||
| CDS-3UTR CCA 90 bp | TCAAATTTTCTCAACTGCCTCACCACCGTGCTGGCCTCCCACCCCCACCTCAGTTGGTGGGGGAATTATTaGTGGTCCAGAAGGAAATGG | + |
|
Preference number: 4 (lower is better) Translates to: SNFLNCLTTVLASHPHLSWWGNY*WSRRKW Trigger: CCATTTCCTTCTGGACCACCAATAATTCCCCCACCA...ACTGAGGTGGGGGTGGGAGGCCAGCACGGTGGTGAGGCAGTTGAGAAAATTTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 6 transcripts: ENST00000380743.9 ENST00000506734.5 ENST00000626847.2 ENST00000627341.2 ENST00000628642.2 ENST00000631104.2 |
||
| CDS-3UTR CCA 90 bp | ACGTGGGTGAGGCACGAGAACTGCTTGAACCCGGATAGCAGAGGTTGCAGTGAGAAACTTAGTGGGGCATaGTGCCACATGCCTGTAATC | + |
|
Preference number: 4 (lower is better) Translates to: TWVRHENCLNPDSRGCSEKLSGA*CHMPVI Trigger: GATTACAGGCATGTGGCACCATGCCCCACTAAGTTT...CTCACTGCAACCTCTGCTATCCGGGTTCAAGCAGTTCTCGTGCCTCACCCACGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507458.2 |
||
| CDS-3UTR GCA 90 bp | TCAAATTTTCTCAACTGCCTCACCACCGTGCTGGCCTCCCACCCCCACCTCAGTCCATTCTTTAGAGCATaGTTAAATGAAGCCACAGCT | + |
|
Preference number: 4 (lower is better) Translates to: SNFLNCLTTVLASHPHLSPFFRA*LNEATA Trigger: AGCTGTGGCTTCATTTAAGCATGCTCTAAAGAATGG...ACTGAGGTGGGGGTGGGAGGCCAGCACGGTGGTGAGGCAGTTGAGAAAATTTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 7 transcripts: ENST00000380742.8 ENST00000380743.9 ENST00000506734.5 ENST00000626847.2 ENST00000627341.2 ENST00000628642.2 ENST00000631104.2 |
||
| CDS-3UTR GCA 90 bp | TCAAATTTTCTCAACTGCCTCACCACCGTGCTGGCCTCCCACCCCCACCTCAGTTTTAGTGCTGCTCTATaGCAGCATTTCCATATAATA | + |
|
Preference number: 4 (lower is better) Translates to: SNFLNCLTTVLASHPHLSFSAAL*QHFHII Trigger: TATTATATGGAAATGCTGGCATAGAGCAGCACTAAA...ACTGAGGTGGGGGTGGGAGGCCAGCACGGTGGTGAGGCAGTTGAGAAAATTTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000626847.2 ENST00000628642.2 |
||
| 3UTR CAA 72 bp | GAACAGCCATGTCCACCAGTTAGATTCTGTAACATTTaGCCACATACGCCTCACATACATTTTGTTAAACCA | + |
|
Preference number: 4 (lower is better) Translates to: EQPCPPVRFCNI*PHTPHIHFVKP Trigger: TGGTTTAACAAAATGTATGTGAGGCGTATGTGGCAAAATGTTACAGAATCTAACTGGTGGACATGGCTGTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 10 transcripts: ENST00000380742.8 ENST00000380743.9 ENST00000506734.5 ENST00000612446.4 ENST00000618251.4 ENST00000624634.3 ENST00000626847.2 ENST00000627341.2 ENST00000628642.2 ENST00000631104.2 |
||
| CDS-3UTR CAA 90 bp | TCAAATTTTCTCAACTGCCTCACCACCGTGCTGGCCTCCCACCCCCACCTCAGTCACGGGGTCAGGAGATaGAGACCATCCTGGCTAACA | + |
|
Preference number: 5 (lower is better) Translates to: SNFLNCLTTVLASHPHLSHGVRR*RPSWLT Trigger: TGTTAGCCAGGATGGTCTCAATCTCCTGACCCCGTG...ACTGAGGTGGGGGTGGGAGGCCAGCACGGTGGTGAGGCAGTTGAGAAAATTTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000506734.5 ENST00000631104.2 |
||
| CDS-3UTR CAA 90 bp | TCAAATTTTCTCAACTGCCTCACCACCGTGCTGGCCTCCCACCCCCACCTCAGTGGCGGTGGTGGGCCATaGAATTTTAGACCTGGCTTT | + |
|
Preference number: 5 (lower is better) Translates to: SNFLNCLTTVLASHPHLSGGGGP*NFRPGF Trigger: AAAGCCAGGTCTAAAATTCAATGGCCCACCACCGCC...ACTGAGGTGGGGGTGGGAGGCCAGCACGGTGGTGAGGCAGTTGAGAAAATTTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 6 transcripts: ENST00000380743.9 ENST00000506734.5 ENST00000626847.2 ENST00000627341.2 ENST00000628642.2 ENST00000631104.2 |
||
| CDS-3UTR CAA 90 bp | TCAAATTTTCTCAACTGCCTCACCACCGTGCTGGCCTCCCACCCCCACCTCAGTGTGGTGGGGGAATTATaGGTGGTCCAGAAGGAAATG | + |
|
Preference number: 5 (lower is better) Translates to: SNFLNCLTTVLASHPHLSVVGEL*VVQKEM Trigger: CATTTCCTTCTGGACCACCAATAATTCCCCCACCAC...ACTGAGGTGGGGGTGGGAGGCCAGCACGGTGGTGAGGCAGTTGAGAAAATTTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 6 transcripts: ENST00000380743.9 ENST00000506734.5 ENST00000626847.2 ENST00000627341.2 ENST00000628642.2 ENST00000631104.2 |
||
| CDS-3UTR CAA 90 bp | TCAAATTTTCTCAACTGCCTCACCACCGTGCTGGCCTCCCACCCCCACCTCAGTAGATTCTGTAACATTTaGCCACATACGCCTCACATA | + |
|
Preference number: 5 (lower is better) Translates to: SNFLNCLTTVLASHPHLSRFCNI*PHTPHI Trigger: TATGTGAGGCGTATGTGGCAAAATGTTACAGAATCT...ACTGAGGTGGGGGTGGGAGGCCAGCACGGTGGTGAGGCAGTTGAGAAAATTTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 7 transcripts: ENST00000380742.8 ENST00000380743.9 ENST00000506734.5 ENST00000626847.2 ENST00000627341.2 ENST00000628642.2 ENST00000631104.2 |
||