Pregenerated sensors for SMN1 (Homo sapiens)
Ensembl gene IDs: ENSG00000172062, ENSG00000275349Ensembl transcript IDs: ENST00000380707.9, ENST00000506163.5, ENST00000506239.6, ENST00000514951.5, ENST00000626580.2, ENST00000628353.2, ENST00000629122.2, ENST00000630432.2
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGTACAATGAACAGCCATGTCCACCAGTTAGATTCTGTAACATTTTaGCACATACGCCTCACATACATTTTGTTAAACCATTTGAAACAT | + |
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Preference number: 1 (lower is better) Translates to: STMNSHVHQLDSVTF*HIRLTYILLNHLKH Trigger: ATGTTTCAAATGGTTTAACAAAATGTATGTGAGGCGTATGTGGCAAAATGTTACAGAATCTAACTGGTGGACATGGCTGTTCATTGTACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000380707.9 ENST00000506163.5 ENST00000506239.6 ENST00000628353.2 ENST00000629122.2 |
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| 3UTR TCA 72 bp | GCATTTCCTGCAAATGAGAAATTAGAACCAGAGGCTTaGCGAATTCCAGTTAAACCATGTCCTCTGTGGACA | + |
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Preference number: 3 (lower is better) Translates to: AFPANEKLEPEA*RIPVKPCPLWT Trigger: TGTCCACAGAGGACATGGTTTAACTGGAATTCGTCAAGCCTCTGGTTCTAATTTCTCATTTGCAGGAAATGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000514951.5 |
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| 3UTR TCA 72 bp | CATTTAGTGCTGCTCTATGCCAGCATTTCCTGCAAATaGGAAATTAGAACCAGAGGCTTGACGAATTCCAGT | + |
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Preference number: 3 (lower is better) Translates to: HLVLLYASISCK*EIRTRGLTNSS Trigger: ACTGGAATTCGTCAAGCCTCTGGTTCTAATTTCTCATTTGCAGGAAATGCTGGCATAGAGCAGCACTAAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000514951.5 |
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| CDS-3UTR TCA 90 bp | TCTTCTATAACGCTTCACATTCCAGATCTGTCTGATCGTTTCTTTAGTGGTGTCGCGGTGGTGGGCCATTaGATTTTAGACCTGGCTTTC | + |
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Preference number: 4 (lower is better) Translates to: SSITLHIPDLSDRFFSGVAVVGH*ILDLAF Trigger: GAAAGCCAGGTCTAAAATTCAATGGCCCACCACCGC...GACACCACTAAAGAAACGATCAGACAGATCTGGAATGTGAAGCGTTATAGAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000380707.9 ENST00000506163.5 ENST00000506239.6 ENST00000514951.5 ENST00000628353.2 ENST00000629122.2 |
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| CDS-3UTR TCA 90 bp | CAGTTATCTTCTATAACGCTTCACATTCCAGATCTGTCTGATCGTTTCTTTAGTGCGGTGGTGGGCCATTaGATTTTAGACCTGGCTTTC | + |
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Preference number: 4 (lower is better) Translates to: QLSSITLHIPDLSDRFFSAVVGH*ILDLAF Trigger: GAAAGCCAGGTCTAAAATTCAATGGCCCACCACCGC...ACTAAAGAAACGATCAGACAGATCTGGAATGTGAAGCGTTATAGAAGATAACTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000380707.9 ENST00000506163.5 ENST00000506239.6 ENST00000514951.5 ENST00000628353.2 ENST00000629122.2 |
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| CDS-3UTR TCA 90 bp | GATTCTGTAACATTTTGCCACATACGCCTCACATACATTTTGTTAAACCATTTGGCGGTGGTGGGCCATTaGATTTTAGACCTGGCTTTC | + |
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Preference number: 4 (lower is better) Translates to: DSVTFCHIRLTYILLNHLAVVGH*ILDLAF Trigger: GAAAGCCAGGTCTAAAATTCAATGGCCCACCACCGC...CAAATGGTTTAACAAAATGTATGTGAGGCGTATGTGGCAAAATGTTACAGAATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 5 transcripts: ENST00000380707.9 ENST00000506163.5 ENST00000506239.6 ENST00000628353.2 ENST00000629122.2 |
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| CDS-3UTR TCA 90 bp | GTATGCAAATTAAGACAGTCTTTTATAAACTACAACACCCTTCTCACAGCTCATGCGGTGGTGGGCCATTaGATTTTAGACCTGGCTTTC | + |
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Preference number: 4 (lower is better) Translates to: VCKLRQSFINYNTLLTAHAVVGH*ILDLAF Trigger: GAAAGCCAGGTCTAAAATTCAATGGCCCACCACCGC...ATGAGCTGTGAGAAGGGTGTTGTAGTTTATAAAAGACTGTCTTAATTTGCATAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000380707.9 ENST00000506163.5 ENST00000506239.6 ENST00000628353.2 ENST00000629122.2 |
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| CDS-3UTR TCA 90 bp | GGCCAGTTATCTTCTATAACGCTTCACATTCCAGATCTGTCTGATCGTTTCTTTAGCATTTCCTGCAAATaGGAAATTAGAACCAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: GQLSSITLHIPDLSDRFFSISCK*EIRTRG Trigger: GCCTCTGGTTCTAATTTCTCATTTGCAGGAAATGCT...AAAGAAACGATCAGACAGATCTGGAATGTGAAGCGTTATAGAAGATAACTGGCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000514951.5 |
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| CDS-3UTR TCA 90 bp | ACATTCCAGATCTGTCTGATCGTTTCTTTAGTGGTGTCATTTAGTGCTGCTCTACTTTTTGATTTTGTCTaGAACCCTTTCCTGGTCCCA | + |
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Preference number: 4 (lower is better) Translates to: TFQICLIVSLVVSFSAALLFDFV*NPFLVP Trigger: TGGGACCAGGAAAGGGTTTCAGACAAAATCAAAAAG...TAGAGCAGCACTAAATGACACCACTAAAGAAACGATCAGACAGATCTGGAATGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000630432.2 |
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| CDS-3UTR GCA 90 bp | TCTTCTATAACGCTTCACATTCCAGATCTGTCTGATCGTTTCTTTAGTGGTGTCTTTAGTGCTGCTCTATaGCAGCATTTCCTGCAAATG | + |
|
Preference number: 4 (lower is better) Translates to: SSITLHIPDLSDRFFSGVFSAAL*QHFLQM Trigger: CATTTGCAGGAAATGCTGGCATAGAGCAGCACTAAA...GACACCACTAAAGAAACGATCAGACAGATCTGGAATGTGAAGCGTTATAGAAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000514951.5 |
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| CDS-3UTR TCA 90 bp | CGCTTCACATTCCAGATCTGTCTGATCGTTTCTTTAGTGGTGTCATTTAGTGCTTTTAGACCTGGCTCTTaGGCATTCTGTTCTATATTA | + |
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Preference number: 4 (lower is better) Translates to: RFTFQICLIVSLVVSFSAFRPGS*AFCSIL Trigger: TAATATAGAACAGAATGCTCAAGAGCCAGGTCTAAA...AGCACTAAATGACACCACTAAAGAAACGATCAGACAGATCTGGAATGTGAAGCG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000626580.2 |
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| CDS-3UTR CAA 90 bp | TCTTCTATAACGCTTCACATTCCAGATCTGTCTGATCGTTTCTTTAGTGGTGTCGGCGGTGGTGGGCCATaGAATTTTAGACCTGGCTCT | + |
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Preference number: 5 (lower is better) Translates to: SSITLHIPDLSDRFFSGVGGGGP*NFRPGS Trigger: AGAGCCAGGTCTAAAATTCAATGGCCCACCACCGCC...GACACCACTAAAGAAACGATCAGACAGATCTGGAATGTGAAGCGTTATAGAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000626580.2 |
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| CDS TCA 72 bp | GGGGTGGTGGTGGTGGCGGTGGCGGTGGTGGGCCATTaGATTTTAGACCTGGCTCTTGAGCATTCTGTTCTA | + |
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Preference number: 6 (lower is better) Translates to: GVVVVAVAVVGH*ILDLALEHSVL Trigger: TAGAACAGAATGCTCAAGAGCCAGGTCTAAAATTCAATGGCCCACCACCGCCACCGCCACCACCACCACCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000626580.2 |
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