Pregenerated sensors for SMKR1 (Homo sapiens)
Ensembl gene IDs: ENSG00000240204Ensembl transcript IDs: ENST00000462322.3, ENST00000488846.1
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CATATCTGGCATAACAGAGGAAGTAAGGTGCATTTCCTGATCTTCCACCATCACAAAGCACACTTAATTTaGATCTCAAGTCGTCTGGAG | + |
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Preference number: 2 (lower is better) Translates to: HIWHNRGSKVHFLIFHHHKAHLI*ISSRLE Trigger: CTCCAGACGACTTGAGATGCAAATTAAGTGTGCTTT...GTGATGGTGGAAGATCAGGAAATGCACCTTACTTCCTCTGTTATGCCAGATATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000462322.3 |
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| CDS-3UTR GCA 90 bp | CATATCTGGCATAACAGAGGAAGTAAGGTGCATTTCCTGATCTTCCACCATCACCGCGAGGCACCTGCTTaGCCCACGCGGCACCTAGGC | + |
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Preference number: 4 (lower is better) Translates to: HIWHNRGSKVHFLIFHHHREAPA*PTRHLG Trigger: GCCTAGGTGCCGCGTGGGGCAAGCAGGTGCCTCGCG...GTGATGGTGGAAGATCAGGAAATGCACCTTACTTCCTCTGTTATGCCAGATATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000462322.3 |
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| CDS-3UTR CCA 90 bp | CATATCTGGCATAACAGAGGAAGTAAGGTGCATTTCCTGATCTTCCACCATCACAGCCGCGGAGCCGCCTaGACGCGAGGCACCTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: HIWHNRGSKVHFLIFHHHSRGAA*TRGTCL Trigger: CAAGCAGGTGCCTCGCGTCCAGGCGGCTCCGCGGCT...GTGATGGTGGAAGATCAGGAAATGCACCTTACTTCCTCTGTTATGCCAGATATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000462322.3 |
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| CDS-3UTR CCA 90 bp | CATATCTGGCATAACAGAGGAAGTAAGGTGCATTTCCTGATCTTCCACCATCACCCGAGCAGGCAGGCGTaGTGGACTCTCCCGATCCCG | + |
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Preference number: 4 (lower is better) Translates to: HIWHNRGSKVHFLIFHHHPSRQA*WTLPIP Trigger: CGGGATCGGGAGAGTCCACCACGCCTGCCTGCTCGG...GTGATGGTGGAAGATCAGGAAATGCACCTTACTTCCTCTGTTATGCCAGATATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000462322.3 |
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| CDS-3UTR CCA 90 bp | CATATCTGGCATAACAGAGGAAGTAAGGTGCATTTCCTGATCTTCCACCATCACAGCAGGCAGGCGTGGTaGACTCTCCCGATCCCGAAG | + |
|
Preference number: 4 (lower is better) Translates to: HIWHNRGSKVHFLIFHHHSRQAW*TLPIPK Trigger: CTTCGGGATCGGGAGAGTCCACCACGCCTGCCTGCT...GTGATGGTGGAAGATCAGGAAATGCACCTTACTTCCTCTGTTATGCCAGATATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000462322.3 |
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| CDS-3UTR TCA 90 bp | CATATCTGGCATAACAGAGGAAGTAAGGTGCATTTCCTGATCTTCCACCATCACGCATGGCCGCGGGGCTaGGAATGTCCACTTCTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: HIWHNRGSKVHFLIFHHHAWPRG*ECPLLV Trigger: AACCAGAAGTGGACATTCTCAGCCCCGCGGCCATGC...GTGATGGTGGAAGATCAGGAAATGCACCTTACTTCCTCTGTTATGCCAGATATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000462322.3 |
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| CDS-3UTR GCA 90 bp | CATATCTGGCATAACAGAGGAAGTAAGGTGCATTTCCTGATCTTCCACCATCACTGGAAGCCTCGCAGATaGAGGCAGTCAGCGACGTTG | + |
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Preference number: 4 (lower is better) Translates to: HIWHNRGSKVHFLIFHHHWKPRR*RQSATL Trigger: CAACGTCGCTGACTGCCTGCATCTGCGAGGCTTCCA...GTGATGGTGGAAGATCAGGAAATGCACCTTACTTCCTCTGTTATGCCAGATATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000462322.3 |
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| CDS-3UTR TCA 90 bp | CATATCTGGCATAACAGAGGAAGTAAGGTGCATTTCCTGATCTTCCACCATCACTTCTGTTTCTTCCCATaGGACTTGCCCTGGCCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: HIWHNRGSKVHFLIFHHHFCFFP*DLPWPF Trigger: AAAAGGCCAGGGCAAGTCTCATGGGAAGAAACAGAA...GTGATGGTGGAAGATCAGGAAATGCACCTTACTTCCTCTGTTATGCCAGATATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000462322.3 |
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| CDS-3UTR TCA 90 bp | CATATCTGGCATAACAGAGGAAGTAAGGTGCATTTCCTGATCTTCCACCATCACGTAAGGTGCATTTCCTaGTCTTCCACCATCACAGAA | + |
|
Preference number: 4 (lower is better) Translates to: HIWHNRGSKVHFLIFHHHVRCIS*SSTITE Trigger: TTCTGTGATGGTGGAAGATCAGGAAATGCACCTTAC...GTGATGGTGGAAGATCAGGAAATGCACCTTACTTCCTCTGTTATGCCAGATATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000462322.3 |
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| CDS-3UTR CCA 90 bp | CATATCTGGCATAACAGAGGAAGTAAGGTGCATTTCCTGATCTTCCACCATCACGTGGCTAACCATATCTaGCATAACAGAGGAAGTAAG | + |
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Preference number: 4 (lower is better) Translates to: HIWHNRGSKVHFLIFHHHVANHI*HNRGSK Trigger: CTTACTTCCTCTGTTATGCCAGATATGGTTAGCCAC...GTGATGGTGGAAGATCAGGAAATGCACCTTACTTCCTCTGTTATGCCAGATATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000462322.3 |
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| CDS CCA 90 bp | GGAGGAGCGCGGCCGGCTCGGGAGGCAGCCAGCCGCGGAGCCGCCTaGACGCGAGGCACCTGCTTGCCCCACGCGGCACCTAGGCCGCCG | + |
|
Preference number: 5 (lower is better) Translates to: GGARPAREAASRGAA*TRGTCLPHAAPRPP Trigger: CGGCGGCCTAGGTGCCGCGTGGGGCAAGCAGGTGCCTCGCGTCCAGGCGGCTCCGCGGCTGGCTGCCTCCCGAGCCGGCCGCGCTCCTCC 80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000462322.3 |
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| CDS GCA 90 bp | GGGAGGCAGCCAGCCGCGGAGCCGCCTGGACGCGAGGCACCTGCTTaGCCCACGCGGCACCTAGGCCGCCGCAGCTGTGGGCGCTGGGCC | + |
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Preference number: 5 (lower is better) Translates to: GRQPAAEPPGREAPA*PTRHLGRRSCGRWA Trigger: GGCCCAGCGCCCACAGCTGCGGCGGCCTAGGTGCCGCGTGGGGCAAGCAGGTGCCTCGCGTCCAGGCGGCTCCGCGGCTGGCTGCCTCCC 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000462322.3 |
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| CDS CCA 90 bp | CCCTTTAGCTGGCATGGCGATTCTCAGCCGAGCAGGCAGGCGTGGTaGACTCTCCCGATCCCGAAGCCCTTAGCATCCACCGGGGCCGCT | + |
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Preference number: 5 (lower is better) Translates to: PFSWHGDSQPSRQAW*TLPIPKPLASTGAA Trigger: AGCGGCCCCGGTGGATGCTAAGGGCTTCGGGATCGGGAGAGTCCACCACGCCTGCCTGCTCGGCTGAGAATCGCCATGCCAGCTAAAGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000462322.3 |
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| CDS CCA 90 bp | TTTCCCTTTAGCTGGCATGGCGATTCTCAGCCGAGCAGGCAGGCGTaGTGGACTCTCCCGATCCCGAAGCCCTTAGCATCCACCGGGGCC | + |
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Preference number: 5 (lower is better) Translates to: FPFSWHGDSQPSRQA*WTLPIPKPLASTGA Trigger: GGCCCCGGTGGATGCTAAGGGCTTCGGGATCGGGAGAGTCCACCACGCCTGCCTGCTCGGCTGAGAATCGCCATGCCAGCTAAAGGGAAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000462322.3 |
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| CDS-3UTR CAA 90 bp | CATATCTGGCATAACAGAGGAAGTAAGGTGCATTTCCTGATCTTCCACCATCACACGCGAGGCACCTGCTaGCCCCACGCGGCACCTAGG | + |
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Preference number: 5 (lower is better) Translates to: HIWHNRGSKVHFLIFHHHTRGTC*PHAAPR Trigger: CCTAGGTGCCGCGTGGGGCAAGCAGGTGCCTCGCGT...GTGATGGTGGAAGATCAGGAAATGCACCTTACTTCCTCTGTTATGCCAGATATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000462322.3 |
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| CDS CAA 90 bp | CGGGAGGCAGCCAGCCGCGGAGCCGCCTGGACGCGAGGCACCTGCTaGCCCCACGCGGCACCTAGGCCGCCGCAGCTGTGGGCGCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: REAASRGAAWTRGTC*PHAAPRPPQLWALG Trigger: GCCCAGCGCCCACAGCTGCGGCGGCCTAGGTGCCGCGTGGGGCAAGCAGGTGCCTCGCGTCCAGGCGGCTCCGCGGCTGGCTGCCTCCCG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000462322.3 |
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| CDS CCA 72 bp | CGGCCGGCTCGGGAGGCAGCCAGCCGCGGAGCCGCCTaGACGCGAGGCACCTGCTTGCCCCACGCGGCACCT | + |
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Preference number: 6 (lower is better) Translates to: RPAREAASRGAA*TRGTCLPHAAP Trigger: AGGTGCCGCGTGGGGCAAGCAGGTGCCTCGCGTCCAGGCGGCTCCGCGGCTGGCTGCCTCCCGAGCCGGCCG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000462322.3 |
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| CDS GCA 72 bp | CCAGCCGCGGAGCCGCCTGGACGCGAGGCACCTGCTTaGCCCACGCGGCACCTAGGCCGCCGCAGCTGTGGG | + |
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Preference number: 6 (lower is better) Translates to: PAAEPPGREAPA*PTRHLGRRSCG Trigger: CCCACAGCTGCGGCGGCCTAGGTGCCGCGTGGGGCAAGCAGGTGCCTCGCGTCCAGGCGGCTCCGCGGCTGG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000462322.3 |
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| CDS CAA 72 bp | GCCAGCCGCGGAGCCGCCTGGACGCGAGGCACCTGCTaGCCCCACGCGGCACCTAGGCCGCCGCAGCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: ASRGAAWTRGTC*PHAAPRPPQLW Trigger: CCACAGCTGCGGCGGCCTAGGTGCCGCGTGGGGCAAGCAGGTGCCTCGCGTCCAGGCGGCTCCGCGGCTGGC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000462322.3 |
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| CDS CCA 72 bp | TGGCATGGCGATTCTCAGCCGAGCAGGCAGGCGTGGTaGACTCTCCCGATCCCGAAGCCCTTAGCATCCACC | + |
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Preference number: 6 (lower is better) Translates to: WHGDSQPSRQAW*TLPIPKPLAST Trigger: GGTGGATGCTAAGGGCTTCGGGATCGGGAGAGTCCACCACGCCTGCCTGCTCGGCTGAGAATCGCCATGCCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000462322.3 |
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| CDS CCA 72 bp | AGCTGGCATGGCGATTCTCAGCCGAGCAGGCAGGCGTaGTGGACTCTCCCGATCCCGAAGCCCTTAGCATCC | + |
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Preference number: 6 (lower is better) Translates to: SWHGDSQPSRQA*WTLPIPKPLAS Trigger: GGATGCTAAGGGCTTCGGGATCGGGAGAGTCCACCACGCCTGCCTGCTCGGCTGAGAATCGCCATGCCAGCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000462322.3 |
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| CDS TCA 72 bp | GGGCGATGTAGTAGAGGTTCAGCATGGCCGCGGGGCTaGGAATGTCCACTTCTGGTTTCTTCTGTTTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: GRCSRGSAWPRG*ECPLLVSSVSS Trigger: GGAAGAAACAGAAGAAACCAGAAGTGGACATTCTCAGCCCCGCGGCCATGCTGAACCTCTACTACATCGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000462322.3 ENST00000488846.1 |
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