Pregenerated sensors for SMIM30 (Homo sapiens)
Ensembl gene IDs: ENSG00000214194Ensembl transcript IDs: ENST00000413744.1, ENST00000439551.1, ENST00000441359.1
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AAGAGGTTCCACGTGACACGACTTTGGCCCGGCAAGGTCCAAATTTaGTCCTGTTTTACAAATACACTGGTGCAACCTAAGTATCCTTTG | + |
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Preference number: 5 (lower is better) Translates to: KRFHVTRLWPGKVQI*SCFTNTLVQPKYPL Trigger: CAAAGGATACTTAGGTTGCACCAGTGTATTTGTAAAACAGGAGCAAATTTGGACCTTGCCGGGCCAAAGTCGTGTCACGTGGAACCTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000441359.1 |
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| CDS GCA 90 bp | AGATTTGAAAAAGAATTCGTACTTTGGCCCGGCAAGGTCCAAATTTaGTCCTGTTTTACAAATACACTGGTGCAACCTAAGTATCCTTTG | + |
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Preference number: 5 (lower is better) Translates to: RFEKEFVLWPGKVQI*SCFTNTLVQPKYPL Trigger: CAAAGGATACTTAGGTTGCACCAGTGTATTTGTAAAACAGGAGCAAATTTGGACCTTGCCGGGCCAAAGTACGAATTCTTTTTCAAATCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000413744.1 |
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| CDS CCA 72 bp | GTTTTACAAATACACTGGTGCAACCTAAGTATCCTTTaGAGACGAGTTCGTACATTACCTTCTAGGAAGCAG | + |
|
Preference number: 6 (lower is better) Translates to: VLQIHWCNLSIL*RRVRTLPSRKQ Trigger: CTGCTTCCTAGAAGGTAATGTACGAACTCGTCTCCAAAGGATACTTAGGTTGCACCAGTGTATTTGTAAAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000441359.1 |
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| CDS CAA 72 bp | CTTAGGGTCTCTCCCATCCAAGAAATGCAGACAAATTaGGCAAAAGTCACACAACATATAACTCTGCGAAGT | + |
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Preference number: 6 (lower is better) Translates to: LRVSPIQEMQTN*AKVTQHITLRS Trigger: ACTTCGCAGAGTTATATGTTGTGTGACTTTTGCCAAATTTGTCTGCATTTCTTGGATGGGAGAGACCCTAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439551.1 |
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| CDS CCA 72 bp | GACTTGATATTAAGATTTGAAAAAGAATTCGTACTTTaGCCCGGCAAGGTCCAAATTTGCTCCTGTTTTACA | + |
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Preference number: 6 (lower is better) Translates to: DLILRFEKEFVL*PGKVQICSCFT Trigger: TGTAAAACAGGAGCAAATTTGGACCTTGCCGGGCCAAAGTACGAATTCTTTTTCAAATCTTAATATCAAGTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000413744.1 |
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| CDS CCA 72 bp | GGCAAAAGTCACACAACATATAACTCTGCGAAGTTGTaGGGAATTAATAAGACTTACCAAAGAAATGGTATA | + |
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Preference number: 6 (lower is better) Translates to: GKSHTTYNSAKL*GINKTYQRNGI Trigger: TATACCATTTCTTTGGTAAGTCTTATTAATTCCCCACAACTTCGCAGAGTTATATGTTGTGTGACTTTTGCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439551.1 |
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