RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SMIM19 (Homo sapiens)

Ensembl gene IDs: ENSG00000176209

Ensembl transcript IDs: ENST00000414154.6, ENST00000416469.6, ENST00000417410.7, ENST00000438528.7, ENST00000498447.5, ENST00000529505.1

Found 298 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGGGTAGAAGCAGGACAGCCAGTCAGCGCCGCTTTGAAGTGTGGCTaGAGGGCTTGCGCTCTCCCCAATTCAGCTGTTGAAGCAGGGAAG +
Preference number: 1 (lower is better)
Translates to: WVEAGQPVSAALKCG*RACALPNSAVEAGK
Trigger: CTTCCCTGCTTCAACAGCTGAATTGGGGAGAGCGCAAGCCCTGCAGCCACACTTCAAAGCGGCGCTGACTGGCTGTCCTGCTTCTACCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR GCA 90 bp GCAGGACAGCCAGTCAGCGCCGCTTTGAAGTGTGGCTGCAGGGCTTaGGCTCTCCCCAATTCAGCTGTTGAAGCAGGGAAGAGACTTCAA +
Preference number: 1 (lower is better)
Translates to: AGQPVSAALKCGCRA*ALPNSAVEAGKRLQ
Trigger: TTGAAGTCTCTTCCCTGCTTCAACAGCTGAATTGGGGAGAGCGCAAGCCCTGCAGCCACACTTCAAAGCGGCGCTGACTGGCTGTCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR CCA 90 bp CTCAACCAGACACAGCGTGAGGTCAACAGCAAACATCTGTGTCCTTaGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCAGCTA +
Preference number: 1 (lower is better)
Translates to: LNQTQREVNSKHLCP*RRPSPLHAAGWHQL
Trigger: TAGCTGATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTTTGCTGTTGACCTCACGCTGTGTCTGGTTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR CCA 90 bp CATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTaGCATCAGCTAAACAGCCAGTTATTTAACACACTCAAGCTGTGC +
Preference number: 1 (lower is better)
Translates to: HLCPWRRPSPLHAAG*HQLNSQLFNTLKLC
Trigger: GCACAGCTTGAGTGTGTTAAATAACTGGCTGTTTAGCTGATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACACAGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR CCA 90 bp CAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTaGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTG +
Preference number: 1 (lower is better)
Translates to: QVLARSSHHRWLHIS*ICAGSLCQGLLSHL
Trigger: CAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
3UTR GCA 90 bp GGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATATGTaGAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTA +
Preference number: 1 (lower is better)
Translates to: GKVKSPSLVTHILDM*RFPVSRPFEPLGDV
Trigger: TACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
3UTR CCA 90 bp ATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTaGTTACACATATCCTGGATATGTGCAGGTTCCCTGTGTCAAGGC +
Preference number: 1 (lower is better)
Translates to: ILKESQVLARSSHHR*LHISWICAGSLCQG
Trigger: GCCTTGACACAGGGAACCTGCACATATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
3UTR GCA 90 bp GTAGCTCTCCTAGGCAAAGGCAAGTTTAGAAGATTGTCCCCTTGTTaGTCTGTTACTACAACCCATAATTACAACTGTTTACAATCCTTT +
Preference number: 1 (lower is better)
Translates to: VALLGKGKFRRLSPC*SVTTTHNYNCLQSF
Trigger: AAAGGATTGTAAACAGTTGTAATTATGGGTTGTAGTAACAGAGCAACAAGGGGACAATCTTCTAAACTTGCCTTTGCCTAGGAGAGCTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR TCA 90 bp GAAAGAATCAGGAGCTTGAAACAATTACTTCTGTTGCTCTTTTTCTaGGGTTTCATTCCAATGAGAGTTGCACACTGTCAGCTTGGTTTT +
Preference number: 1 (lower is better)
Translates to: ERIRSLKQLLLLLFF*GFIPMRVAHCQLGF
Trigger: AAAACCAAGCTGACAGTGTGCAACTCTCATTGGAATGAAACCTCAGAAAAAGAGCAACAGAAGTAATTGTTTCAAGCTCCTGATTCTTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000498447.5
3UTR GCA 90 bp TTCTTGAAATGGAATACATTTCCAGTTGTTGTCTTAAACGAATCTTaGTTATCGTGTCATAAAAGTTGGGCTCTGACAAAGTTTCCTCTG +
Preference number: 1 (lower is better)
Translates to: FLKWNTFPVVVLNES*LSCHKSWALTKFPL
Trigger: CAGAGGAAACTTTGTCAGAGCCCAACTTTTATGACACGATAAGCAAGATTCGTTTAAGACAACAACTGGAAATGTATTCCATTTCAAGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000498447.5
3UTR-3UTR TCA 90 bp AACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCCTGGTCTCAAACTCCTaGCCTCGTGATCCTCCCACC +
Preference number: 2 (lower is better)
Translates to: NICVLGGGLLPFTQLAGILVSNS*PRDPPT
Trigger: GGTGGGAGGATCACGAGGTCAGGAGTTTGAGACCAG...GATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR GCA 90 bp GTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCAGCTAAATGTGGCTGCAGGGCTTaGGCTCTCCCCAATTCAGCT +
Preference number: 2 (lower is better)
Translates to: VSLEAAFSPSRSWLASAKCGCRA*ALPNSA
Trigger: AGCTGAATTGGGGAGAGCGCAAGCCCTGCAGCCACA...TTTAGCTGATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR GCA 90 bp AACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCACTTCAAAGCCGGCTTaGTGTTGTTCCTGCCAGTGG +
Preference number: 2 (lower is better)
Translates to: NICVLGGGLLPFTQLAGITSKPA*CCSCQW
Trigger: CCACTGGCAGGAACAACAGCAAGCCGGCTTTGAAGT...GATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR TCA 90 bp GTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCAGCTAAATGTGCCACATGTCAGTaGCGAGTAAACCACTCCTAC +
Preference number: 2 (lower is better)
Translates to: VSLEAAFSPSRSWLASAKCATCQ*RVNHSY
Trigger: GTAGGAGTGGTTTACTCGTCACTGACATGTGGCACA...TTTAGCTGATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR TCA 90 bp AACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCCCCCAATTCAGCTGTTaGAGCAGGGAAGAGACTTCA +
Preference number: 2 (lower is better)
Translates to: NICVLGGGLLPFTQLAGIPQFSC*SREETS
Trigger: TGAAGTCTCTTCCCTGCTTCAACAGCTGAATTGGGG...GATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR CCA 90 bp AACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCAGCAGGTCCCCAGTATaGCCTAAAGTAGAGCTACCT +
Preference number: 2 (lower is better)
Translates to: NICVLGGGLLPFTQLAGISRSPV*PKVELP
Trigger: AGGTAGCTCTACTTTAGGCCATACTGGGGACCTGCT...GATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR GCA 90 bp CAGCGTGAGGTCAACAGCAAACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTTCGCCTAGGCTGGAATaGAGTGGTGTGATCTTGGCT +
Preference number: 2 (lower is better)
Translates to: QREVNSKHLCPWRRPSPLSPRLE*SGVILA
Trigger: AGCCAAGATCACACCACTGCATTCCAGCCTAGGCGA...AAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTTTGCTGTTGACCTCACGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR GCA 90 bp AGGTCAACAGCAAACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGACTTCAAAGCCGGCTTaGTGTTGTTCCTGCCAGTGG +
Preference number: 2 (lower is better)
Translates to: RSTANICVLGGGLLPFTQTSKPA*CCSCQW
Trigger: CCACTGGCAGGAACAACAGCAAGCCGGCTTTGAAGT...CTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTTTGCTGTTGACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR GCA 90 bp CAGCGTGAGGTCAACAGCAAACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTCTACTACCGCAGAGTTaGCAACACCAATACACAGGC +
Preference number: 2 (lower is better)
Translates to: QREVNSKHLCPWRRPSPLLLPQS*QHQYTG
Trigger: GCCTGTGTATTGGTGTTGGCAACTCTGCGGTAGTAG...AAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTTTGCTGTTGACCTCACGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR GCA 90 bp CAGCGTGAGGTCAACAGCAAACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTTGCCAGTGGGGTGTGTaGAATTCCCATCAGTTTGCT +
Preference number: 2 (lower is better)
Translates to: QREVNSKHLCPWRRPSPLCQWGV*NSHQFA
Trigger: AGCAAACTGATGGGAATTGCACACACCCCACTGGCA...AAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTTTGCTGTTGACCTCACGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR TCA 90 bp GTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCAGCTAAATCACTTGCCAGGGCTTaGTGCTCATCAAATAATCTA +
Preference number: 2 (lower is better)
Translates to: VSLEAAFSPSRSWLASAKSLARA*CSSNNL
Trigger: TAGATTATTTGATGAGCATCAAGCCCTGGCAAGTGA...TTTAGCTGATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR GCA 90 bp AGGTCAACAGCAAACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCATATCCTGGATATGTaGAGGTTCCCTGTGTCAAGG +
Preference number: 2 (lower is better)
Translates to: RSTANICVLGGGLLPFTQHILDM*RFPVSR
Trigger: CCTTGACACAGGGAACCTGCACATATCCAGGATATG...CTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTTTGCTGTTGACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR CCA 90 bp GTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCAGCTAAATCAAGTCACCATCGCTaGTTACACATATCCTGGATA +
Preference number: 2 (lower is better)
Translates to: VSLEAAFSPSRSWLASAKSSHHR*LHISWI
Trigger: TATCCAGGATATGTGTAACCAGCGATGGTGACTTGA...TTTAGCTGATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR CCA 90 bp AGGTCAACAGCAAACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGAGGAATCACAGGTCTTaGCAAGGTCAAGTCACCATC +
Preference number: 2 (lower is better)
Translates to: RSTANICVLGGGLLPFTQRNHRS*QGQVTI
Trigger: GATGGTGACTTGACCTTGCCAAGACCTGTGATTCCT...CTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTTTGCTGTTGACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR CCA 90 bp CAGCGTGAGGTCAACAGCAAACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTTGGTTACACATATCCTaGATATGTGCAGGTTCCCTG +
Preference number: 2 (lower is better)
Translates to: QREVNSKHLCPWRRPSPLWLHIS*ICAGSL
Trigger: CAGGGAACCTGCACATATCCAGGATATGTGTAACCA...AAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTTTGCTGTTGACCTCACGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR CCA 90 bp GTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCAGCTAAAAAACAAACTCGCTCCTaGGAGCATAATGAGGAAAAA +
Preference number: 2 (lower is better)
Translates to: VSLEAAFSPSRSWLASAKKQTRS*EHNEEK
Trigger: TTTTTCCTCATTATGCTCCCAGGAGCGAGTTTGTTT...TTTAGCTGATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACAC
52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR TCA 90 bp CAGCGTGAGGTCAACAGCAAACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTTCACTTGCCAGGGCTTaGTGCTCATCAAATAATCTA +
Preference number: 2 (lower is better)
Translates to: QREVNSKHLCPWRRPSPLSLARA*CSSNNL
Trigger: TAGATTATTTGATGAGCATCAAGCCCTGGCAAGTGA...AAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTTTGCTGTTGACCTCACGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR CAA 90 bp ATTCAGCTGTTGAAGCAGGGAAGAGACTTCAAAGCCGGCTTGCTGTaGTTCCTGCCAGTGGGGTGTGTGCAATTCCCATCAGTTTGCTTT +
Preference number: 2 (lower is better)
Translates to: IQLLKQGRDFKAGLL*FLPVGCVQFPSVCF
Trigger: AAAGCAAACTGATGGGAATTGCACACACCCCACTGGCAGGAACAACAGCAAGCCGGCTTTGAAGTCTCTTCCCTGCTTCAACAGCTGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR TCA 90 bp AGCTTAGCATGCCAAAAATGCAGCAGTAACCAGACAGCAACATTCACCAGTGGCAGGTGGAAGTTGCAGTaGGCAGAGATTGTGCCACTG +
Preference number: 2 (lower is better)
Translates to: SLACQKCSSNQTATFTSGRWKLQ*AEIVPL
Trigger: CAGTGGCACAATCTCTGCTCACTGCAACTTCCACCT...GCCACTGGTGAATGTTGCTGTCTGGTTACTGCTGCATTTTTGGCATGCTAAGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR TCA 90 bp AGGTCAACAGCAAACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGAAAGAATCAGGAGCTTaGAACAATTACTTCTGTTGC +
Preference number: 2 (lower is better)
Translates to: RSTANICVLGGGLLPFTQKESGA*NNYFCC
Trigger: GCAACAGAAGTAATTGTTTCAAGCTCCTGATTCTTT...CTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTTTGCTGTTGACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR GCA 90 bp CTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTACATATCCTGGATATGTaGAGGTTCCCTGTGTCAAGG +
Preference number: 2 (lower is better)
Translates to: LDMCRFPVSRPFEPLGDVHILDM*RFPVSR
Trigger: CCTTGACACAGGGAACCTGCACATATCCAGGATATG...TACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
ENST00000498447.5
3UTR-3UTR GCA 90 bp AGCTTAGCATGCCAAAAATGCAGCAGTAACCAGACAGCAACATTCACCAGTGGCCTACTACCGCAGAGTTaGCAACACCAATACACAGGC +
Preference number: 2 (lower is better)
Translates to: SLACQKCSSNQTATFTSGLLPQS*QHQYTG
Trigger: GCCTGTGTATTGGTGTTGGCAACTCTGCGGTAGTAG...GCCACTGGTGAATGTTGCTGTCTGGTTACTGCTGCATTTTTGGCATGCTAAGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR CAA 90 bp ATTTTTCTTCCAAAGAAAACAGTTCTGTTGAGTCTCAGGTGGATGTaGGGTAGAAGCAGGACAGCCAGTCAGCGCCGCTTTGAAGTGTGG +
Preference number: 2 (lower is better)
Translates to: IFLPKKTVLLSLRWM*GRSRTASQRRFEVW
Trigger: CCACACTTCAAAGCGGCGCTGACTGGCTGTCCTGCTTCTACCCAACATCCACCTGAGACTCAACAGAACTGTTTTCTTTGGAAGAAAAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR GCA 90 bp TTGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTCATATCCTGGATATGTaGAGGTTCCCTGTGTCAAGG +
Preference number: 2 (lower is better)
Translates to: LYPEGITGLGKVKSPSLVHILDM*RFPVSR
Trigger: CCTTGACACAGGGAACCTGCACATATCCAGGATATG...AACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR CCA 90 bp CTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTAGTCAGCTTGGTTTTGTaGCTGCTGATAGTCGTACTT +
Preference number: 2 (lower is better)
Translates to: LDMCRFPVSRPFEPLGDVVSLVL*LLIVVL
Trigger: AAGTACGACTATCAGCAGCCACAAAACCAAGCTGAC...TACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000498447.5
3UTR-3UTR TCA 90 bp AAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGTGTCAAGGCCTTTTaGGCCACTTGGAGATGTAAT +
Preference number: 2 (lower is better)
Translates to: KESQVLARSSHHRWLHISCVKAF*ATWRCN
Trigger: ATTACATCTCCAAGTGGCTCAAAAGGCCTTGACACA...GGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR TCA 90 bp CTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTAAAAGAATCAGGAGCTTaGAACAATTACTTCTGTTGC +
Preference number: 2 (lower is better)
Translates to: LDMCRFPVSRPFEPLGDVKESGA*NNYFCC
Trigger: GCAACAGAAGTAATTGTTTCAAGCTCCTGATTCTTT...TACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
ENST00000498447.5
3UTR-3UTR TCA 90 bp AAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCAAAGAATCAGGAGCTTaGAACAATTACTTCTGTTGC +
Preference number: 2 (lower is better)
Translates to: KESQVLARSSHHRWLHISKESGA*NNYFCC
Trigger: GCAACAGAAGTAATTGTTTCAAGCTCCTGATTCTTT...GGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR CCA 90 bp CACTGTCAGCTTGGTTTTGTGGCTGCTGATAGTCGTACTTTCTTGAAATGGAATTCGTGTCATAAAAGTTaGGCTCTGACAAAGTTTCCT +
Preference number: 2 (lower is better)
Translates to: HCQLGFVAADSRTFLKWNSCHKS*ALTKFP
Trigger: AGGAAACTTTGTCAGAGCCCAACTTTTATGACACGA...ATTCCATTTCAAGAAAGTACGACTATCAGCAGCCACAAAACCAAGCTGACAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000498447.5
3UTR CAA 90 bp TGGAAATATACAGTAGCTCTCCTAGGCAAAGGCAAGTTTAGAAGATaGTCCCCTTGTTGCTCTGTTACTACAACCCATAATTACAACTGT +
Preference number: 2 (lower is better)
Translates to: WKYTVALLGKGKFRR*SPCCSVTTTHNYNC
Trigger: ACAGTTGTAATTATGGGTTGTAGTAACAGAGCAACAAGGGGACAATCTTCTAAACTTGCCTTTGCCTAGGAGAGCTACTGTATATTTCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR TCA 90 bp GCAAATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCAAAGAATCAGGAGCTTaGAACAATTACTTCTGTTGC +
Preference number: 2 (lower is better)
Translates to: ANGINSRIPTSQDVFLFLKESGA*NNYFCC
Trigger: GCAACAGAAGTAATTGTTTCAAGCTCCTGATTCTTT...GAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATTTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR TCA 90 bp ACATTTCCAGTTGTTGTCTTAAACGAATCTTGCTTATCGTGTCATAAAAGTTGGGTTGTAATATGCTCATaGTCCTGGTCATCAGAAGCT +
Preference number: 2 (lower is better)
Translates to: TFPVVVLNESCLSCHKSWVVICS*SWSSEA
Trigger: AGCTTCTGATGACCAGGATCATGAGCATATTACAAC...CCAACTTTTATGACACGATAAGCAAGATTCGTTTAAGACAACAACTGGAAATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000498447.5
3UTR GCA 72 bp CCAGTCAGCGCCGCTTTGAAGTGTGGCTGCAGGGCTTaGGCTCTCCCCAATTCAGCTGTTGAAGCAGGGAAG +
Preference number: 3 (lower is better)
Translates to: PVSAALKCGCRA*ALPNSAVEAGK
Trigger: CTTCCCTGCTTCAACAGCTGAATTGGGGAGAGCGCAAGCCCTGCAGCCACACTTCAAAGCGGCGCTGACTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR GCA 72 bp GCAGGACAGCCAGTCAGCGCCGCTTTGAAGTGTGGCTaGAGGGCTTGCGCTCTCCCCAATTCAGCTGTTGAA +
Preference number: 3 (lower is better)
Translates to: AGQPVSAALKCG*RACALPNSAVE
Trigger: TTCAACAGCTGAATTGGGGAGAGCGCAAGCCCTGCAGCCACACTTCAAAGCGGCGCTGACTGGCTGTCCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR CCA 72 bp AGAAGCAGGACAGCCAGTCAGCGCCGCTTTGAAGTGTaGCTGCAGGGCTTGCGCTCTCCCCAATTCAGCTGT +
Preference number: 3 (lower is better)
Translates to: RSRTASQRRFEV*LQGLRSPQFSC
Trigger: ACAGCTGAATTGGGGAGAGCGCAAGCCCTGCAGCCACACTTCAAAGCGGCGCTGACTGGCTGTCCTGCTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR CCA 72 bp ACACAGCGTGAGGTCAACAGCAAACATCTGTGTCCTTaGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGG +
Preference number: 3 (lower is better)
Translates to: TQREVNSKHLCP*RRPSPLHAAGW
Trigger: CCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTTTGCTGTTGACCTCACGCTGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR CAA 90 bp AACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCTGTGATCTTGGCTCATaGCAACCTCCACCTCTCAGA +
Preference number: 3 (lower is better)
Translates to: NICVLGGGLLPFTQLAGICDLGS*QPPPLR
Trigger: TCTGAGAGGTGGAGGTTGCAATGAGCCAAGATCACA...GATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR CAA 90 bp GTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCAGCTAAATGTGATCTTGGCTCATaGCAACCTCCACCTCTCAGA +
Preference number: 3 (lower is better)
Translates to: VSLEAAFSPSRSWLASAKCDLGS*QPPPLR
Trigger: TCTGAGAGGTGGAGGTTGCAATGAGCCAAGATCACA...TTTAGCTGATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR TCA 72 bp TGGCTGCAGGGCTTGCGCTCTCCCCAATTCAGCTGTTaGAGCAGGGAAGAGACTTCAAAGCCGGCTTGCTGT +
Preference number: 3 (lower is better)
Translates to: WLQGLRSPQFSC*SREETSKPACC
Trigger: ACAGCAAGCCGGCTTTGAAGTCTCTTCCCTGCTTCAACAGCTGAATTGGGGAGAGCGCAAGCCCTGCAGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR CAA 90 bp AGGTCAACAGCAAACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGTTGGGTTTAACCACGTaGGCCAGGCTGGTCTCAAAC +
Preference number: 3 (lower is better)
Translates to: RSTANICVLGGGLLPFTQLGLTT*ARLVSN
Trigger: GTTTGAGACCAGCCTGGCCAACGTGGTTAAACCCAA...CTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTTTGCTGTTGACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR CAA 90 bp GTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCAGCTAAAAAGATTGTCCCCTTGTaGCTCTGTTACTACAACCCA +
Preference number: 3 (lower is better)
Translates to: VSLEAAFSPSRSWLASAKKIVPL*LCYYNP
Trigger: TGGGTTGTAGTAACAGAGCAACAAGGGGACAATCTT...TTTAGCTGATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR CAA 90 bp AACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCGGCAAGTTTAGAAGATaGTCCCCTTGTTGCTCTGTT +
Preference number: 3 (lower is better)
Translates to: NICVLGGGLLPFTQLAGIGKFRR*SPCCSV
Trigger: AACAGAGCAACAAGGGGACAATCTTCTAAACTTGCC...GATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR GCA 72 bp AGGGAAGAGACTTCAAAGCCGGCTTGCTGTTGTTCCTaGCAGTGGGGTGTGTGCAATTCCCATCAGTTTGCT +
Preference number: 3 (lower is better)
Translates to: REETSKPACCCS*QWGVCNSHQFA
Trigger: AGCAAACTGATGGGAATTGCACACACCCCACTGGCAGGAACAACAGCAAGCCGGCTTTGAAGTCTCTTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR CAA 90 bp AAGTGTGGCTGCAGGGCTTGCGCTCTCCCCAATTCAGCTGTTGAAGCAGGGAAGGGCAAGTTTAGAAGATaGTCCCCTTGTTGCTCTGTT +
Preference number: 3 (lower is better)
Translates to: KCGCRACALPNSAVEAGKGKFRR*SPCCSV
Trigger: AACAGAGCAACAAGGGGACAATCTTCTAAACTTGCC...CTTCCCTGCTTCAACAGCTGAATTGGGGAGAGCGCAAGCCCTGCAGCCACACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR CAA 90 bp CAGCGTGAGGTCAACAGCAAACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTTGTAATTTGTCCAGATaGTGCCACATGTCAGTGACG +
Preference number: 3 (lower is better)
Translates to: QREVNSKHLCPWRRPSPLCNLSR*CHMSVT
Trigger: CGTCACTGACATGTGGCACAATCTGGACAAATTACA...AAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTTTGCTGTTGACCTCACGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR CAA 90 bp GTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCAGCTAAAGAAAGAATCAGGAGCTaGAAACAATTACTTCTGTTG +
Preference number: 3 (lower is better)
Translates to: VSLEAAFSPSRSWLASAKERIRS*KQLLLL
Trigger: CAACAGAAGTAATTGTTTCAAGCTCCTGATTCTTTC...TTTAGCTGATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR CCA 72 bp GAGACTTCAAAGCCGGCTTGCTGTTGTTCCTGCCAGTaGGGTGTGTGCAATTCCCATCAGTTTGCTTTAAGG +
Preference number: 3 (lower is better)
Translates to: ETSKPACCCSCQ*GVCNSHQFALR
Trigger: CCTTAAAGCAAACTGATGGGAATTGCACACACCCCACTGGCAGGAACAACAGCAAGCCGGCTTTGAAGTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR GCA 72 bp ACTGCCTCGCCAGTGGTAGCACTACTACCGCAGAGTTaGCAACACCAATACACAGGCATCCATTTATTCAAC +
Preference number: 3 (lower is better)
Translates to: TASPVVALLPQS*QHQYTGIHLFN
Trigger: GTTGAATAAATGGATGCCTGTGTATTGGTGTTGGCAACTCTGCGGTAGTAGTGCTACCACTGGCGAGGCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR CAA 90 bp CAGCGTGAGGTCAACAGCAAACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTGAAAGAATCAGGAGCTaGAAACAATTACTTCTGTTG +
Preference number: 3 (lower is better)
Translates to: QREVNSKHLCPWRRPSPLERIRS*KQLLLL
Trigger: CAACAGAAGTAATTGTTTCAAGCTCCTGATTCTTTC...AAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTTTGCTGTTGACCTCACGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR CAA 90 bp ATGAATAACTCAACCAGACACAGCGTGAGGTCAACAGCAAACATCTGTGTCCTTAGTCTCAGGTGGATGTaGGGTAGAAGCAGGACAGCC +
Preference number: 3 (lower is better)
Translates to: MNNSTRHSVRSTANICVLSLRWM*GRSRTA
Trigger: GGCTGTCCTGCTTCTACCCAACATCCACCTGAGACT...AAGGACACAGATGTTTGCTGTTGACCTCACGCTGTGTCTGGTTGAGTTATTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR GCA 72 bp AAGTCACCATCGCTGGTTACACATATCCTGGATATGTaGAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTT +
Preference number: 3 (lower is better)
Translates to: KSPSLVTHILDM*RFPVSRPFEPL
Trigger: AAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGATATGTGTAACCAGCGATGGTGACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR CAA 90 bp CTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTAGAAAGAATCAGGAGCTaGAAACAATTACTTCTGTTG +
Preference number: 3 (lower is better)
Translates to: LDMCRFPVSRPFEPLGDVERIRS*KQLLLL
Trigger: CAACAGAAGTAATTGTTTCAAGCTCCTGATTCTTTC...TACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
ENST00000498447.5
3UTR-3UTR CAA 90 bp ATGAATAACTCAACCAGACACAGCGTGAGGTCAACAGCAAACATCTGTGTCCTTAAGATTGTCCCCTTGTaGCTCTGTTACTACAACCCA +
Preference number: 3 (lower is better)
Translates to: MNNSTRHSVRSTANICVLKIVPL*LCYYNP
Trigger: TGGGTTGTAGTAACAGAGCAACAAGGGGACAATCTT...AAGGACACAGATGTTTGCTGTTGACCTCACGCTGTGTCTGGTTGAGTTATTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR CAA 90 bp GCAAATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCAAGGAATCACAGGTCTaGGCAAGGTCAAGTCACCAT +
Preference number: 3 (lower is better)
Translates to: ANGINSRIPTSQDVFLFLKESQV*ARSSHH
Trigger: ATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTT...GAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
3UTR-3UTR CAA 90 bp GATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTAATTGAAAGAATCAGGAGCTaGAAACAATTACTTCTGTTG +
Preference number: 3 (lower is better)
Translates to: DMCRFPVSRPFEPLGDVIERIRS*KQLLLL
Trigger: CAACAGAAGTAATTGTTTCAAGCTCCTGATTCTTTC...AATTACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
ENST00000498447.5
3UTR-3UTR CAA 90 bp TCTTTTGACTTATGTGGACAATTAAACTTCCCCACTATTACCCAGTCAGCTTTTACTACTACCGCAGAGTaGCCAACACCAATACACAGG +
Preference number: 3 (lower is better)
Translates to: SFDLCGQLNFPTITQSAFTTTAE*PTPIHR
Trigger: CCTGTGTATTGGTGTTGGCAACTCTGCGGTAGTAGT...AAAAGCTGACTGGGTAATAGTGGGGAAGTTTAATTGTCCACATAAGTCAAAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR TCA 72 bp ACGAATCTTGCTTATCGTGTCATAAAAGTTGGGCTCTaGCAAAGTTTCCTCTGTAGGTGGCACACTGAATAT +
Preference number: 3 (lower is better)
Translates to: TNLAYRVIKVGL*QSFLCRWHTEY
Trigger: ATATTCAGTGTGCCACCTACAGAGGAAACTTTGTCAGAGCCCAACTTTTATGACACGATAAGCAAGATTCGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000498447.5
3UTR GCA 72 bp CTAGGCAAAGGCAAGTTTAGAAGATTGTCCCCTTGTTaGTCTGTTACTACAACCCATAATTACAACTGTTTA +
Preference number: 3 (lower is better)
Translates to: LGKGKFRRLSPC*SVTTTHNYNCL
Trigger: TAAACAGTTGTAATTATGGGTTGTAGTAACAGAGCAACAAGGGGACAATCTTCTAAACTTGCCTTTGCCTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR GCA 72 bp TGGAATACATTTCCAGTTGTTGTCTTAAACGAATCTTaGTTATCGTGTCATAAAAGTTGGGCTCTGACAAAG +
Preference number: 3 (lower is better)
Translates to: WNTFPVVVLNES*LSCHKSWALTK
Trigger: CTTTGTCAGAGCCCAACTTTTATGACACGATAAGCAAGATTCGTTTAAGACAACAACTGGAAATGTATTCCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000498447.5
3UTR TCA 72 bp GTTTGTATTAATGTCTATAGAGTTGTAATATGCTCATaGTCCTGGTCATCAGAAGCTGTGGTAAAAGGACTT +
Preference number: 3 (lower is better)
Translates to: VCINVYRVVICS*SWSSEAVVKGL
Trigger: AAGTCCTTTTACCACAGCTTCTGATGACCAGGATCATGAGCATATTACAACTCTATAGACATTAATACAAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000498447.5
3UTR TCA 72 bp AATTCAACATGTAGGAAGTGCGCTCAAACTCCTTTGTaGGTTAAGAATTATTCTGTTTGGTCAATTCACTTT +
Preference number: 3 (lower is better)
Translates to: NSTCRKCAQTPL*VKNYSVWSIHF
Trigger: AAAGTGAATTGACCAAACAGAATAATTCTTAACTCACAAAGGAGTTTGAGCGCACTTCCTACATGTTGAATT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp GTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCAGCTAAACAGTCAGCGCCGCTTTaGAGTGTGGCTGCAGGGCTT +
Preference number: 4 (lower is better)
Translates to: VSLEAAFSPSRSWLASAKQSAPL*SVAAGL
Trigger: AAGCCCTGCAGCCACACTTCAAAGCGGCGCTGACTG...TTTAGCTGATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp ACCAGTGGCAGTAATACTGCCTCGCCAGTGGTAGCACTACTACCGCAGAGTTGCAAAGCCACACAGGCCTaGGCGTGGAGGCGCGGGGCT +
Preference number: 4 (lower is better)
Translates to: TSGSNTASPVVALLPQSCKATQA*AWRRGA
Trigger: AGCCCCGCGCCTCCACGCCCAGGCCTGTGTGGCTTT...GCAACTCTGCGGTAGTAGTGCTACCACTGGCGAGGCAGTATTACTGCCACTGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000417410.7
CDS-3UTR GCA 90 bp GGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGCCGGGACCGGGCGGGTaGTCGGAGTTTCGGGGACCG +
Preference number: 4 (lower is better)
Translates to: GITGLGKVKSPSLVTHILPGPGG*SEFRGP
Trigger: CGGTCCCCGAAACTCCGAGCACCCGCCCGGTCCCGG...CAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000417410.7
CDS-3UTR GCA 90 bp AGCTTAGCATGCCAAAAATGCAGCAGTAACCAGACAGCAACATTCACCAGTGGCGTGCCGGGCGCCTCCTaGTCCGCTGTGCGCGCTTGG +
Preference number: 4 (lower is better)
Translates to: SLACQKCSSNQTATFTSGVPGAS*SAVRAW
Trigger: CCAAGCGCGCACAGCGGAGCAGGAGGCGCCCGGCAC...GCCACTGGTGAATGTTGCTGTCTGGTTACTGCTGCATTTTTGGCATGCTAAGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000438528.7
CDS-3UTR GCA 90 bp TATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACCATGGGGCTGCGAGTaGCGGGCGCCTCCTGCTCCG +
Preference number: 4 (lower is better)
Translates to: YPEGITGLGKVKSPSLVTPWGCE*RAPPAP
Trigger: CGGAGCAGGAGGCGCCCGGCACTCGCAGCCCCATGG...TGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000438528.7
CDS-3UTR GCA 90 bp TCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATAGCACGCGGCCAGCGCTaGTCCGCTCCGGGGCTCTTT +
Preference number: 4 (lower is better)
Translates to: SQVLARSSHHRWLHISWIARGQR*SAPGLF
Trigger: AAAGAGCCCCGGAGCGGAGCAGCGCTGGCCGCGTGC...TATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000414154.6
ENST00000417410.7
CDS-3UTR TCA 90 bp GTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCAGCTAAACAACCAGACACAGCGTaGGGTCAACAGCAAACATCT +
Preference number: 4 (lower is better)
Translates to: VSLEAAFSPSRSWLASAKQPDTA*GQQQTS
Trigger: AGATGTTTGCTGTTGACCTCACGCTGTGTCTGGTTG...TTTAGCTGATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp AACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCAAAGCAATTCACAGGTaGTGGGCAGTCCACAGAGTC +
Preference number: 4 (lower is better)
Translates to: NICVLGGGLLPFTQLAGIKAIHR*WAVHRV
Trigger: GACTCTGTGGACTGCCCAGCACCTGTGAATTGCTTT...GATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000417410.7
CDS-3UTR CCA 90 bp TGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTAATGGGCCGCCGCAACTaGCCCGTGTGCGCTTCCGGA +
Preference number: 4 (lower is better)
Translates to: CILKESQVLARSSHHRWLMGRRN*PVCASG
Trigger: TCCGGAAGCGCACACGGGCCAGTTGCGGCGGCCCAT...TAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000417410.7
CDS-3UTR CCA 90 bp TCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATACATAACCCCCAGCCATaGGGGCTGCCGGCTCCGGAG +
Preference number: 4 (lower is better)
Translates to: SQVLARSSHHRWLHISWIHNPQP*GLPAPE
Trigger: CTCCGGAGCCGGCAGCCCCCATGGCTGGGGGTTATG...TATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000414154.6
CDS-3UTR CCA 90 bp GTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCAGCTAAAAGCAGGTCCCCAGTATaGCCTAAAGTAGAGCTACCT +
Preference number: 4 (lower is better)
Translates to: VSLEAAFSPSRSWLASAKSRSPV*PKVELP
Trigger: AGGTAGCTCTACTTTAGGCCATACTGGGGACCTGCT...TTTAGCTGATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp GATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTAATTCGCAACTGGCCCGTGTaGGCTTCCGGAAGCGGGCGA +
Preference number: 4 (lower is better)
Translates to: DMCRFPVSRPFEPLGDVIRNWPV*ASGSGR
Trigger: TCGCCCGCTTCCGGAAGCGCACACGGGCCAGTTGCG...AATTACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000417410.7
CDS-3UTR GCA 90 bp TCCTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGAGGCGTGAGCCACCGTaGCCAGCCAGCTCACTCTTA +
Preference number: 4 (lower is better)
Translates to: SWICAGSLCQGLLSHLEMRREPP*PASSLL
Trigger: TAAGAGTGAGCTGGCTGGGCACGGTGGCTCACGCCT...CATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp ACCAGTGGCAGTAATACTGCCTCGCCAGTGGTAGCACTACTACCGCAGAGTTGCAGGTGGAAGTTGCAGTaGGCAGAGATTGTGCCACTG +
Preference number: 4 (lower is better)
Translates to: TSGSNTASPVVALLPQSCRWKLQ*AEIVPL
Trigger: CAGTGGCACAATCTCTGCTCACTGCAACTTCCACCT...GCAACTCTGCGGTAGTAGTGCTACCACTGGCGAGGCAGTATTACTGCCACTGGT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp TATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACATCTTGGCCCCGATCCTaGGAGACCTGCTCCTTCCGG +
Preference number: 4 (lower is better)
Translates to: YPEGITGLGKVKSPSLVTSWPRS*ETCSFR
Trigger: CCGGAAGGAGCAGGTCTCGCAGGATCGGGGCCAAGA...TGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000417410.7
CDS-3UTR GCA 90 bp CTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTAGCTTTGAAGTGTGGCTaGAGGGCTTGCGCTCTCCCC +
Preference number: 4 (lower is better)
Translates to: LDMCRFPVSRPFEPLGDVALKCG*RACALP
Trigger: GGGGAGAGCGCAAGCCCTGCAGCCACACTTCAAAGC...TACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp GCAAATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCCCCCAGCCATGGGGCTaGGAGTGCCGGGCGCCTCCT +
Preference number: 4 (lower is better)
Translates to: ANGINSRIPTSQDVFLFLPQPWG*ECRAPP
Trigger: AGGAGGCGCCCGGCACTCGCAGCCCCATGGCTGGGG...GAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATTTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000438528.7
CDS-3UTR CCA 90 bp CATATCCTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGACGCCGCTTTGAAGTGTaGCTGCAGGGCTTGCGCTCT +
Preference number: 4 (lower is better)
Translates to: HILDMCRFPVSRPFEPLGRRFEV*LQGLRS
Trigger: AGAGCGCAAGCCCTGCAGCCACACTTCAAAGCGGCG...TCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGATATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp ATGAATAACTCAACCAGACACAGCGTGAGGTCAACAGCAAACATCTGTGTCCTTCATAACCCCCAGCCATaGGGCTGCGAGTGCCGGGCG +
Preference number: 4 (lower is better)
Translates to: MNNSTRHSVRSTANICVLHNPQP*GCECRA
Trigger: CGCCCGGCACTCGCAGCCCCATGGCTGGGGGTTATG...AAGGACACAGATGTTTGCTGTTGACCTCACGCTGTGTCTGGTTGAGTTATTCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000438528.7
CDS-3UTR TCA 90 bp TTGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTCAGTCAGCGCCGCTTTaGAGTGTGGCTGCAGGGCTT +
Preference number: 4 (lower is better)
Translates to: LYPEGITGLGKVKSPSLVQSAPL*SVAAGL
Trigger: AAGCCCTGCAGCCACACTTCAAAGCGGCGCTGACTG...AACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp AAGTGTGGCTGCAGGGCTTGCGCTCTCCCCAATTCAGCTGTTGAAGCAGGGAAGCATATCCTGGATATGTaGAGGTTCCCTGTGTCAAGG +
Preference number: 4 (lower is better)
Translates to: KCGCRACALPNSAVEAGKHILDM*RFPVSR
Trigger: CCTTGACACAGGGAACCTGCACATATCCAGGATATG...CTTCCCTGCTTCAACAGCTGAATTGGGGAGAGCGCAAGCCCTGCAGCCACACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp TGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATATGTGCAGGTTGCTTTGAAGTGTGGCTaGAGGGCTTGCGCTCTCCCC +
Preference number: 4 (lower is better)
Translates to: WQGQVTIAGYTYPGYVQVALKCG*RACALP
Trigger: GGGGAGAGCGCAAGCCCTGCAGCCACACTTCAAAGC...AACCTGCACATATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp CTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTAGAACTCTTCCAGTCTTaGCCCCGATCCTGCGAGACC +
Preference number: 4 (lower is better)
Translates to: LDMCRFPVSRPFEPLGDVELFQS*PRSCET
Trigger: GGTCTCGCAGGATCGGGGCCAAGACTGGAAGAGTTC...TACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000417410.7
CDS-3UTR CCA 90 bp TCCTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTCCCCTTCACGCAGCTaGCTGGCATCAGCTAAACAG +
Preference number: 4 (lower is better)
Translates to: SWICAGSLCQGLLSHLEMSPSRS*LASAKQ
Trigger: CTGTTTAGCTGATGCCAGCCAGCTGCGTGAAGGGGA...CATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR CAA 72 bp TTGAAGCAGGGAAGAGACTTCAAAGCCGGCTTGCTGTaGTTCCTGCCAGTGGGGTGTGTGCAATTCCCATCA +
Preference number: 4 (lower is better)
Translates to: LKQGRDFKAGLL*FLPVGCVQFPS
Trigger: TGATGGGAATTGCACACACCCCACTGGCAGGAACAACAGCAAGCCGGCTTTGAAGTCTCTTCCCTGCTTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp TCCTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGAGGTGGAAGTTGCAGTaGGCAGAGATTGTGCCACTG +
Preference number: 4 (lower is better)
Translates to: SWICAGSLCQGLLSHLEMRWKLQ*AEIVPL
Trigger: CAGTGGCACAATCTCTGCTCACTGCAACTTCCACCT...CATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp AAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCCTGGTCTCAAACTCCTaGCCTCGTGATCCTCCCACC +
Preference number: 4 (lower is better)
Translates to: KESQVLARSSHHRWLHISLVSNS*PRDPPT
Trigger: GGTGGGAGGATCACGAGGTCAGGAGTTTGAGACCAG...GGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp CAGCGTGAGGTCAACAGCAAACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTAGAAAACAGTTCTGTTaGGTCTCAGGTGGATGTTGG +
Preference number: 4 (lower is better)
Translates to: QREVNSKHLCPWRRPSPLRKQFC*VSGGCW
Trigger: CCAACATCCACCTGAGACTCAACAGAACTGTTTTCT...AAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTTTGCTGTTGACCTCACGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp TGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTATGCACCAGGGCAGGCTaGCCAGTGCTTACTGCTGAA +
Preference number: 4 (lower is better)
Translates to: CILKESQVLARSSHHRWLCTRAG*PVLTAE
Trigger: TTCAGCAGTAAGCACTGGTCAGCCTGCCCTGGTGCA...TAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp ACCAGTGGCAGTAATACTGCCTCGCCAGTGGTAGCACTACTACCGCAGAGTTGCCATATCCTGGATATGTaGAGGTTCCCTGTGTCAAGG +
Preference number: 4 (lower is better)
Translates to: TSGSNTASPVVALLPQSCHILDM*RFPVSR
Trigger: CCTTGACACAGGGAACCTGCACATATCCAGGATATG...GCAACTCTGCGGTAGTAGTGCTACCACTGGCGAGGCAGTATTACTGCCACTGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp TGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTATGTGGCTGCAGGGCTTaGGCTCTCCCCAATTCAGCT +
Preference number: 4 (lower is better)
Translates to: CILKESQVLARSSHHRWLCGCRA*ALPNSA
Trigger: AGCTGAATTGGGGAGAGCGCAAGCCCTGCAGCCACA...TAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp TCCTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGGCAATTCACAGGTGCTaGGCAGTCCACAGAGTCACT +
Preference number: 4 (lower is better)
Translates to: SWICAGSLCQGLLSHLEMAIHRC*AVHRVT
Trigger: AGTGACTCTGTGGACTGCCCAGCACCTGTGAATTGC...CATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000417410.7
CDS-3UTR CCA 90 bp CCAGTGGTAGCACTACTACCGCAGAGTTGCCAACACCAATACACAGGCATCCATAAACATCTGTGTCCTTaGAGGCGGCCTTCTCCCCTT +
Preference number: 4 (lower is better)
Translates to: PVVALLPQSCQHQYTGIHKHLCP*RRPSPL
Trigger: AAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTTT...ATGGATGCCTGTGTATTGGTGTTGGCAACTCTGCGGTAGTAGTGCTACCACTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp TCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATACACGACTCCCAAACCTaGACTCTTCCAGTCTTGGCC +
Preference number: 4 (lower is better)
Translates to: SQVLARSSHHRWLHISWIHDSQT*TLPVLA
Trigger: GGCCAAGACTGGAAGAGTTCAGGTTTGGGAGTCGTG...TATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000417410.7
CDS-3UTR TCA 90 bp AAGTGTGGCTGCAGGGCTTGCGCTCTCCCCAATTCAGCTGTTGAAGCAGGGAAGTCACTTGCCAGGGCTTaGTGCTCATCAAATAATCTA +
Preference number: 4 (lower is better)
Translates to: KCGCRACALPNSAVEAGKSLARA*CSSNNL
Trigger: TAGATTATTTGATGAGCATCAAGCCCTGGCAAGTGA...CTTCCCTGCTTCAACAGCTGAATTGGGGAGAGCGCAAGCCCTGCAGCCACACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp CCAGTGGTAGCACTACTACCGCAGAGTTGCCAACACCAATACACAGGCATCCATCAACCAGACACAGCGTaGGGTCAACAGCAAACATCT +
Preference number: 4 (lower is better)
Translates to: PVVALLPQSCQHQYTGIHQPDTA*GQQQTS
Trigger: AGATGTTTGCTGTTGACCTCACGCTGTGTCTGGTTG...ATGGATGCCTGTGTATTGGTGTTGGCAACTCTGCGGTAGTAGTGCTACCACTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp ATTGCAAATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTGCACGCGGCCAGCGCTaGTCCGCTCCGGGGCTCTTT +
Preference number: 4 (lower is better)
Translates to: IANGINSRIPTSQDVFLFARGQR*SAPGLF
Trigger: AAAGAGCCCCGGAGCGGAGCAGCGCTGGCCGCGTGC...AAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATTTGCAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000414154.6
ENST00000417410.7
CDS-3UTR GCA 90 bp GGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGTCGCCTAGGCTGGAATaGAGTGGTGTGATCTTGGCT +
Preference number: 4 (lower is better)
Translates to: GITGLGKVKSPSLVTHILSPRLE*SGVILA
Trigger: AGCCAAGATCACACCACTGCATTCCAGCCTAGGCGA...CAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp TCCTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTCATCTCCTGTCACTTaGCAGGGCTTGATGCTCATC +
Preference number: 4 (lower is better)
Translates to: SWICAGSLCQGLLSHLEMSSPVT*QGLMLI
Trigger: GATGAGCATCAAGCCCTGGCAAGTGACAGGAGATGA...CATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp CTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTAGCTTGCTGTTGTTCCTaGCAGTGGGGTGTGTGCAAT +
Preference number: 4 (lower is better)
Translates to: LDMCRFPVSRPFEPLGDVACCCS*QWGVCN
Trigger: ATTGCACACACCCCACTGGCAGGAACAACAGCAAGC...TACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp GGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGCACTGCACTCCAGTCTaGGCAACAGACTCTGTCTCA +
Preference number: 4 (lower is better)
Translates to: GITGLGKVKSPSLVTHILHCTPV*ATDSVS
Trigger: TGAGACAGAGTCTGTTGCCCAGACTGGAGTGCAGTG...CAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp TCCTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGAGCAGGTCCCCAGTATaGCCTAAAGTAGAGCTACCT +
Preference number: 4 (lower is better)
Translates to: SWICAGSLCQGLLSHLEMSRSPV*PKVELP
Trigger: AGGTAGCTCTACTTTAGGCCATACTGGGGACCTGCT...CATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp ATGAATAACTCAACCAGACACAGCGTGAGGTCAACAGCAAACATCTGTGTCCTTCGCCGCTTTGAAGTGTaGCTGCAGGGCTTGCGCTCT +
Preference number: 4 (lower is better)
Translates to: MNNSTRHSVRSTANICVLRRFEV*LQGLRS
Trigger: AGAGCGCAAGCCCTGCAGCCACACTTCAAAGCGGCG...AAGGACACAGATGTTTGCTGTTGACCTCACGCTGTGTCTGGTTGAGTTATTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp CATATCCTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAAAACATCTGTGTCCTTaGAGGCGGCCTTCTCCCCTT +
Preference number: 4 (lower is better)
Translates to: HILDMCRFPVSRPFEPLGKHLCP*RRPSPL
Trigger: AAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTTT...TCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGATATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR CAA 72 bp CCAAAGAAAACAGTTCTGTTGAGTCTCAGGTGGATGTaGGGTAGAAGCAGGACAGCCAGTCAGCGCCGCTTT +
Preference number: 4 (lower is better)
Translates to: PKKTVLLSLRWM*GRSRTASQRRF
Trigger: AAAGCGGCGCTGACTGGCTGTCCTGCTTCTACCCAACATCCACCTGAGACTCAACAGAACTGTTTTCTTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp ATTGCAAATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCCCGCAGGCTGCGCGTaGTTCAGCCTCAACCCTCCC +
Preference number: 4 (lower is better)
Translates to: IANGINSRIPTSQDVFLFPAGCA*FSLNPP
Trigger: GGGAGGGTTGAGGCTGAATCACGCGCAGCCTGCGGG...AAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATTTGCAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000417410.7
CDS-3UTR TCA 90 bp CTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTACCCCAATTCAGCTGTTaGAGCAGGGAAGAGACTTCA +
Preference number: 4 (lower is better)
Translates to: LDMCRFPVSRPFEPLGDVPQFSC*SREETS
Trigger: TGAAGTCTCTTCCCTGCTTCAACAGCTGAATTGGGG...TACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp TGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATATGTGCAGGTTTTCGAGCAATTCTCCTaGCTCAGCCTCCTGAGTAGC +
Preference number: 4 (lower is better)
Translates to: WQGQVTIAGYTYPGYVQVFEQFS*LSLLSS
Trigger: GCTACTCAGGAGGCTGAGGCAGGAGAATTGCTCGAA...AACCTGCACATATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp AAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTCGCCTAGGCTGGAATaGAGTGGTGTGATCTTGGCT +
Preference number: 4 (lower is better)
Translates to: KESQVLARSSHHRWLHISSPRLE*SGVILA
Trigger: AGCCAAGATCACACCACTGCATTCCAGCCTAGGCGA...GGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp GGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGTGCCAGTGGGGTGTGTaGAATTCCCATCAGTTTGCT +
Preference number: 4 (lower is better)
Translates to: GITGLGKVKSPSLVTHILCQWGV*NSHQFA
Trigger: AGCAAACTGATGGGAATTGCACACACCCCACTGGCA...CAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp TGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTAACTTCAAAGCCGGCTTaGTGTTGTTCCTGCCAGTGG +
Preference number: 4 (lower is better)
Translates to: CILKESQVLARSSHHRWLTSKPA*CCSCQW
Trigger: CCACTGGCAGGAACAACAGCAAGCCGGCTTTGAAGT...TAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp ATGAATAACTCAACCAGACACAGCGTGAGGTCAACAGCAAACATCTGTGTCCTTTGTGGCTGCAGGGCTTaGGCTCTCCCCAATTCAGCT +
Preference number: 4 (lower is better)
Translates to: MNNSTRHSVRSTANICVLCGCRA*ALPNSA
Trigger: AGCTGAATTGGGGAGAGCGCAAGCCCTGCAGCCACA...AAGGACACAGATGTTTGCTGTTGACCTCACGCTGTGTCTGGTTGAGTTATTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp GTCTTAAACGAATCTTGCTTATCGTGTCATAAAAGTTGGGCTCTGACAAAGTTTCATAACCCCCAGCCATaGGGGCTGCCGGCTCCGGAG +
Preference number: 4 (lower is better)
Translates to: VLNESCLSCHKSWALTKFHNPQP*GLPAPE
Trigger: CTCCGGAGCCGGCAGCCCCCATGGCTGGGGGTTATG...AAACTTTGTCAGAGCCCAACTTTTATGACACGATAAGCAAGATTCGTTTAAGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000498447.5
CDS-3UTR CCA 90 bp TCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATACACTGCACTCCAGTCTaGGCAACAGACTCTGTCTCA +
Preference number: 4 (lower is better)
Translates to: SQVLARSSHHRWLHISWIHCTPV*ATDSVS
Trigger: TGAGACAGAGTCTGTTGCCCAGACTGGAGTGCAGTG...TATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp AAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCGTCTCAGGTGGATGTTaGGTAGAAGCAGGACAGCCA +
Preference number: 4 (lower is better)
Translates to: KESQVLARSSHHRWLHISVSGGC*VEAGQP
Trigger: TGGCTGTCCTGCTTCTACCCAACATCCACCTGAGAC...GGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp TCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATATGTGCCACATGTCAGTaGCGAGTAAACCACTCCTAC +
Preference number: 4 (lower is better)
Translates to: SQVLARSSHHRWLHISWICATCQ*RVNHSY
Trigger: GTAGGAGTGGTTTACTCGTCACTGACATGTGGCACA...TATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp TGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATATGTGCAGGTTTGTGCCACATGTCAGTaGCGAGTAAACCACTCCTAC +
Preference number: 4 (lower is better)
Translates to: WQGQVTIAGYTYPGYVQVCATCQ*RVNHSY
Trigger: GTAGGAGTGGTTTACTCGTCACTGACATGTGGCACA...AACCTGCACATATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp TATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACTACTACCGCAGAGTTaGCAACACCAATACACAGGC +
Preference number: 4 (lower is better)
Translates to: YPEGITGLGKVKSPSLVTLLPQS*QHQYTG
Trigger: GCCTGTGTATTGGTGTTGGCAACTCTGCGGTAGTAG...TGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp GCAAATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCAGGCGTGAGCCACCGTaGCCAGCCAGCTCACTCTTA +
Preference number: 4 (lower is better)
Translates to: ANGINSRIPTSQDVFLFLRREPP*PASSLL
Trigger: TAAGAGTGAGCTGGCTGGGCACGGTGGCTCACGCCT...GAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp TATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACATCATCTCCTGTCACTTaGCAGGGCTTGATGCTCATC +
Preference number: 4 (lower is better)
Translates to: YPEGITGLGKVKSPSLVTSSPVT*QGLMLI
Trigger: GATGAGCATCAAGCCCTGGCAAGTGACAGGAGATGA...TGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp CTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTAAGGAATCACAGGTCTTaGCAAGGTCAAGTCACCATC +
Preference number: 4 (lower is better)
Translates to: LDMCRFPVSRPFEPLGDVRNHRS*QGQVTI
Trigger: GATGGTGACTTGACCTTGCCAAGACCTGTGATTCCT...TACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp CATATCCTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAAGGAATCACAGGTCTTaGCAAGGTCAAGTCACCATC +
Preference number: 4 (lower is better)
Translates to: HILDMCRFPVSRPFEPLGRNHRS*QGQVTI
Trigger: GATGGTGACTTGACCTTGCCAAGACCTGTGATTCCT...TCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGATATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp GATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTAATTGTCTCAGGTGGATGTTaGGTAGAAGCAGGACAGCCA +
Preference number: 4 (lower is better)
Translates to: DMCRFPVSRPFEPLGDVIVSGGC*VEAGQP
Trigger: TGGCTGTCCTGCTTCTACCCAACATCCACCTGAGAC...AATTACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR CAA 72 bp TACTGCCTCGCCAGTGGTAGCACTACTACCGCAGAGTaGCCAACACCAATACACAGGCATCCATTTATTCAA +
Preference number: 4 (lower is better)
Translates to: YCLASGSTTTAE*PTPIHRHPFIQ
Trigger: TTGAATAAATGGATGCCTGTGTATTGGTGTTGGCAACTCTGCGGTAGTAGTGCTACCACTGGCGAGGCAGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp TCCTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGATAAAAGTTGGGCTCTaGCAAAGTTTCCTCTGTAGG +
Preference number: 4 (lower is better)
Translates to: SWICAGSLCQGLLSHLEMIKVGL*QSFLCR
Trigger: CCTACAGAGGAAACTTTGTCAGAGCCCAACTTTTAT...CATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
ENST00000498447.5
CDS-3UTR TCA 90 bp GGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGTGTGTCAAGGCCTTTTaGGCCACTTGGAGATGTAAT +
Preference number: 4 (lower is better)
Translates to: GITGLGKVKSPSLVTHILCVKAF*ATWRCN
Trigger: ATTACATCTCCAAGTGGCTCAAAAGGCCTTGACACA...CAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp CTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTATGTGTCAAGGCCTTTTaGGCCACTTGGAGATGTAAT +
Preference number: 4 (lower is better)
Translates to: LDMCRFPVSRPFEPLGDVCVKAF*ATWRCN
Trigger: ATTACATCTCCAAGTGGCTCAAAAGGCCTTGACACA...TACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
ENST00000498447.5
CDS-3UTR TCA 90 bp GGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCACTGATCTGGTCTCAAACTCCTaGCCTCGTGATCCTCCCACC +
Preference number: 4 (lower is better)
Translates to: GINSRIPTSQDVFLFLTDLVSNS*PRDPPT
Trigger: GGTGGGAGGATCACGAGGTCAGGAGTTTGAGACCAG...ATCAGTGAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp CCAGTGGTAGCACTACTACCGCAGAGTTGCCAACACCAATACACAGGCATCCATTCACTTGCCAGGGCTTaGTGCTCATCAAATAATCTA +
Preference number: 4 (lower is better)
Translates to: PVVALLPQSCQHQYTGIHSLARA*CSSNNL
Trigger: TAGATTATTTGATGAGCATCAAGCCCTGGCAAGTGA...ATGGATGCCTGTGTATTGGTGTTGGCAACTCTGCGGTAGTAGTGCTACCACTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp GCAAATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCTGCACCAGGGCAGGCTaGCCAGTGCTTACTGCTGAA +
Preference number: 4 (lower is better)
Translates to: ANGINSRIPTSQDVFLFLCTRAG*PVLTAE
Trigger: TTCAGCAGTAAGCACTGGTCAGCCTGCCCTGGTGCA...GAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp CTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTAGAAGTTCCTCCATTGTaGTTCTCCTCAATCCTCCAA +
Preference number: 4 (lower is better)
Translates to: LDMCRFPVSRPFEPLGDVEVPPL*FSSILQ
Trigger: TTGGAGGATTGAGGAGAATCACAATGGAGGAACTTC...TACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000498447.5
CDS-3UTR GCA 90 bp TCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATACATATCCTGGATATGTaGAGGTTCCCTGTGTCAAGG +
Preference number: 4 (lower is better)
Translates to: SQVLARSSHHRWLHISWIHILDM*RFPVSR
Trigger: CCTTGACACAGGGAACCTGCACATATCCAGGATATG...TATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp GATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTAATTCTACTACCGCAGAGTTaGCAACACCAATACACAGGC +
Preference number: 4 (lower is better)
Translates to: DMCRFPVSRPFEPLGDVILLPQS*QHQYTG
Trigger: GCCTGTGTATTGGTGTTGGCAACTCTGCGGTAGTAG...AATTACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp GGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGTGGTTACACATATCCTaGATATGTGCAGGTTCCCTG +
Preference number: 4 (lower is better)
Translates to: GITGLGKVKSPSLVTHILWLHIS*ICAGSL
Trigger: CAGGGAACCTGCACATATCCAGGATATGTGTAACCA...CAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp TTGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTAGGAATCACAGGTCTTaGCAAGGTCAAGTCACCATC +
Preference number: 4 (lower is better)
Translates to: LYPEGITGLGKVKSPSLVRNHRS*QGQVTI
Trigger: GATGGTGACTTGACCTTGCCAAGACCTGTGATTCCT...AACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACAA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp TCTTTTGACTTATGTGGACAATTAAACTTCCCCACTATTACCCAGTCAGCTTTTACACAGGCCTGGGCGTaGAGGCGCGGGGCTGTTATA +
Preference number: 4 (lower is better)
Translates to: SFDLCGQLNFPTITQSAFTQAWA*RRGAVI
Trigger: TATAACAGCCCCGCGCCTCCACGCCCAGGCCTGTGT...AAAAGCTGACTGGGTAATAGTGGGGAAGTTTAATTGTCCACATAAGTCAAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000417410.7
CDS-3UTR CCA 90 bp GCAAATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCCATAACCCCCAGCCATaGGGAAGCTCACAGGCCTTC +
Preference number: 4 (lower is better)
Translates to: ANGINSRIPTSQDVFLFLHNPQP*GSSQAF
Trigger: GAAGGCCTGTGAGCTTCCCCATGGCTGGGGGTTATG...GAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000417410.7
CDS-3UTR TCA 90 bp AAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTCACTGATTGTATCCTaGAGGAATCACAGGTCTTGG +
Preference number: 4 (lower is better)
Translates to: KESQVLARSSHHRWLHISSLIVS*RNHRSW
Trigger: CCAAGACCTGTGATTCCTTCAGGATACAATCAGTGA...GGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp TGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTAAGAAAACAGTTCTGTTaGGTCTCAGGTGGATGTTGG +
Preference number: 4 (lower is better)
Translates to: CILKESQVLARSSHHRWLRKQFC*VSGGCW
Trigger: CCAACATCCACCTGAGACTCAACAGAACTGTTTTCT...TAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp CTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTAGTTGTAATATGCTCATaGTCCTGGTCATCAGAAGCT +
Preference number: 4 (lower is better)
Translates to: LDMCRFPVSRPFEPLGDVVVICS*SWSSEA
Trigger: AGCTTCTGATGACCAGGATCATGAGCATATTACAAC...TACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000498447.5
CDS-3UTR GCA 90 bp GGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGCAGGAGTATGCATCATaGTGTAGAAAAGACGGTCTA +
Preference number: 4 (lower is better)
Translates to: GITGLGKVKSPSLVTHILQEYAS*CRKDGL
Trigger: TAGACCGTCTTTTCTACAGCATGATGCATACTCCTG...CAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp CATATCCTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAAGATTGTCCCCTTGTTaGTCTGTTACTACAACCCAT +
Preference number: 4 (lower is better)
Translates to: HILDMCRFPVSRPFEPLGRLSPC*SVTTTH
Trigger: ATGGGTTGTAGTAACAGAGCAACAAGGGGACAATCT...TCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGATATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp CATATCCTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGATCAAGTAAACATTGGTaGCTTCATTCCAGGCTTCGT +
Preference number: 4 (lower is better)
Translates to: HILDMCRFPVSRPFEPLGSSKHW*LHSRLR
Trigger: ACGAAGCCTGGAATGAAGCCACCAATGTTTACTTGA...TCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGATATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
ENST00000498447.5
CDS-3UTR CCA 90 bp TATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACAGTCAGCTTGGTTTTGTaGCTGCTGATAGTCGTACTT +
Preference number: 4 (lower is better)
Translates to: YPEGITGLGKVKSPSLVTVSLVL*LLIVVL
Trigger: AAGTACGACTATCAGCAGCCACAAAACCAAGCTGAC...TGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp TGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTATGGTTACACATATCCTaGATATGTGCAGGTTCCCTG +
Preference number: 4 (lower is better)
Translates to: CILKESQVLARSSHHRWLWLHIS*ICAGSL
Trigger: CAGGGAACCTGCACATATCCAGGATATGTGTAACCA...TAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp GGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGTCAAGTCACCATCGCTaGTTACACATATCCTGGATA +
Preference number: 4 (lower is better)
Translates to: GITGLGKVKSPSLVTHILSSHHR*LHISWI
Trigger: TATCCAGGATATGTGTAACCAGCGATGGTGACTTGA...CAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp TGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTAATAAAAGTTGGGCTCTaGCAAAGTTTCCTCTGTAGG +
Preference number: 4 (lower is better)
Translates to: CILKESQVLARSSHHRWLIKVGL*QSFLCR
Trigger: CCTACAGAGGAAACTTTGTCAGAGCCCAACTTTTAT...TAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp ATGAATAACTCAACCAGACACAGCGTGAGGTCAACAGCAAACATCTGTGTCCTTGAGGTTTCATTCCAATaGGAGTTGCACACTGTCAGC +
Preference number: 4 (lower is better)
Translates to: MNNSTRHSVRSTANICVLEVSFQ*ELHTVS
Trigger: GCTGACAGTGTGCAACTCTCATTGGAATGAAACCTC...AAGGACACAGATGTTTGCTGTTGACCTCACGCTGTGTCTGGTTGAGTTATTCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp CCAGTGGTAGCACTACTACCGCAGAGTTGCCAACACCAATACACAGGCATCCATAAAGAATCAGGAGCTTaGAACAATTACTTCTGTTGC +
Preference number: 4 (lower is better)
Translates to: PVVALLPQSCQHQYTGIHKESGA*NNYFCC
Trigger: GCAACAGAAGTAATTGTTTCAAGCTCCTGATTCTTT...ATGGATGCCTGTGTATTGGTGTTGGCAACTCTGCGGTAGTAGTGCTACCACTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp GATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTAATTTCACTGATTGTATCCTaGAGGAATCACAGGTCTTGG +
Preference number: 4 (lower is better)
Translates to: DMCRFPVSRPFEPLGDVISLIVS*RNHRSW
Trigger: CCAAGACCTGTGATTCCTTCAGGATACAATCAGTGA...AATTACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp TCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATAGCATGGGAAAAGATATaGGGCTCTTTAGGAAAGCTT +
Preference number: 4 (lower is better)
Translates to: SQVLARSSHHRWLHISWIAWEKI*GSLGKL
Trigger: AAGCTTTCCTAAAGAGCCTCATATCTTTTCCCATGC...TATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp TGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATATGTGCAGGTTCAGGAGTATGCATCATaGTGTAGAAAAGACGGTCTA +
Preference number: 4 (lower is better)
Translates to: WQGQVTIAGYTYPGYVQVQEYAS*CRKDGL
Trigger: TAGACCGTCTTTTCTACAGCATGATGCATACTCCTG...AACCTGCACATATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp GGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCACTGATGCTTGCTGTTGTTCCTaGCAGTGGGGTGTGTGCAAT +
Preference number: 4 (lower is better)
Translates to: GINSRIPTSQDVFLFLTDACCCS*QWGVCN
Trigger: ATTGCACACACCCCACTGGCAGGAACAACAGCAAGC...ATCAGTGAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp AGCTTAGCATGCCAAAAATGCAGCAGTAACCAGACAGCAACATTCACCAGTGGCTCAAGTAAACATTGGTaGCTTCATTCCAGGCTTCGT +
Preference number: 4 (lower is better)
Translates to: SLACQKCSSNQTATFTSGSSKHW*LHSRLR
Trigger: ACGAAGCCTGGAATGAAGCCACCAATGTTTACTTGA...GCCACTGGTGAATGTTGCTGTCTGGTTACTGCTGCATTTTTGGCATGCTAAGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp TGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTATCAAGTAAACATTGGTaGCTTCATTCCAGGCTTCGT +
Preference number: 4 (lower is better)
Translates to: CILKESQVLARSSHHRWLSSKHW*LHSRLR
Trigger: ACGAAGCCTGGAATGAAGCCACCAATGTTTACTTGA...TAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp TGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATATGTGCAGGTTAGTTTCCTCTGTAGGTaGCACACTGAATATCCTCAT +
Preference number: 4 (lower is better)
Translates to: WQGQVTIAGYTYPGYVQVSFLCR*HTEYPH
Trigger: ATGAGGATATTCAGTGTGCCACCTACAGAGGAAACT...AACCTGCACATATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp TGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTAAGTTTCCTCTGTAGGTaGCACACTGAATATCCTCAT +
Preference number: 4 (lower is better)
Translates to: CILKESQVLARSSHHRWLSFLCR*HTEYPH
Trigger: ATGAGGATATTCAGTGTGCCACCTACAGAGGAAACT...TAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp GATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTAATTGTCAGCTTGGTTTTGTaGCTGCTGATAGTCGTACTT +
Preference number: 4 (lower is better)
Translates to: DMCRFPVSRPFEPLGDVIVSLVL*LLIVVL
Trigger: AAGTACGACTATCAGCAGCCACAAAACCAAGCTGAC...AATTACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
ENST00000498447.5
CDS-3UTR CCA 90 bp TCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATATCAAGTCACCATCGCTaGTTACACATATCCTGGATA +
Preference number: 4 (lower is better)
Translates to: SQVLARSSHHRWLHISWISSHHR*LHISWI
Trigger: TATCCAGGATATGTGTAACCAGCGATGGTGACTTGA...TATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp GATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTAATTATAAAAGTTGGGCTCTaGCAAAGTTTCCTCTGTAGG +
Preference number: 4 (lower is better)
Translates to: DMCRFPVSRPFEPLGDVIIKVGL*QSFLCR
Trigger: CCTACAGAGGAAACTTTGTCAGAGCCCAACTTTTAT...AATTACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
ENST00000498447.5
CDS-3UTR TCA 90 bp CACTGTCAGCTTGGTTTTGTGGCTGCTGATAGTCGTACTTTCTTGAAATGGAATGAGGTTTCATTCCAATaGGAGTTGCACACTGTCAGC +
Preference number: 4 (lower is better)
Translates to: HCQLGFVAADSRTFLKWNEVSFQ*ELHTVS
Trigger: GCTGACAGTGTGCAACTCTCATTGGAATGAAACCTC...ATTCCATTTCAAGAAAGTACGACTATCAGCAGCCACAAAACCAAGCTGACAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000498447.5
CDS-3UTR TCA 90 bp AAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCCTGTTGCTCTTTTTCTaGGGTTTCATTCCAATGAGA +
Preference number: 4 (lower is better)
Translates to: KESQVLARSSHHRWLHISLLLFF*GFIPMR
Trigger: TCTCATTGGAATGAAACCTCAGAAAAAGAGCAACAG...GGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp AGCTTAGCATGCCAAAAATGCAGCAGTAACCAGACAGCAACATTCACCAGTGGCAACCACTCCTACTGCTaGTTAAATTCACTTGTGGAA +
Preference number: 4 (lower is better)
Translates to: SLACQKCSSNQTATFTSGNHSYC*LNSLVE
Trigger: TTCCACAAGTGAATTTAATCAGCAGTAGGAGTGGTT...GCCACTGGTGAATGTTGCTGTCTGGTTACTGCTGCATTTTTGGCATGCTAAGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp TTGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTAACCACTCCTACTGCTaGTTAAATTCACTTGTGGAA +
Preference number: 4 (lower is better)
Translates to: LYPEGITGLGKVKSPSLVNHSYC*LNSLVE
Trigger: TTCCACAAGTGAATTTAATCAGCAGTAGGAGTGGTT...AACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp GGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCACTGATCCCCAATTCAGCTGTTaGAGCAGGGAAGAGACTTCA +
Preference number: 4 (lower is better)
Translates to: GINSRIPTSQDVFLFLTDPQFSC*SREETS
Trigger: TGAAGTCTCTTCCCTGCTTCAACAGCTGAATTGGGG...ATCAGTGAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp CACTGTCAGCTTGGTTTTGTGGCTGCTGATAGTCGTACTTTCTTGAAATGGAATCATATCCTGGATATGTaGAGGTTCCCTGTGTCAAGG +
Preference number: 4 (lower is better)
Translates to: HCQLGFVAADSRTFLKWNHILDM*RFPVSR
Trigger: CCTTGACACAGGGAACCTGCACATATCCAGGATATG...ATTCCATTTCAAGAAAGTACGACTATCAGCAGCCACAAAACCAAGCTGACAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000498447.5
CDS-3UTR GCA 90 bp AATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCACTTTCGAGCAATTCTCCTaGCTCAGCCTCCTGAGTAGC +
Preference number: 4 (lower is better)
Translates to: NGINSRIPTSQDVFLFLTFEQFS*LSLLSS
Trigger: GCTACTCAGGAGGCTGAGGCAGGAGAATTGCTCGAA...AGTGAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp TGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACTATCAAGTAAACATTaGTGGCTTCATTCCAGGCTT +
Preference number: 4 (lower is better)
Translates to: CILKESQVLARSSHHRWLLSSKH*WLHSRL
Trigger: AAGCCTGGAATGAAGCCACCAATGTTTACTTGATAG...TAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp GCACACTGTCAGCTTGGTTTTGTGGCTGCTGATAGTCGTACTTTCTTGAAATGGAGTTTCCTCTGTAGGTaGCACACTGAATATCCTCAT +
Preference number: 4 (lower is better)
Translates to: AHCQLGFVAADSRTFLKWSFLCR*HTEYPH
Trigger: ATGAGGATATTCAGTGTGCCACCTACAGAGGAAACT...CCATTTCAAGAAAGTACGACTATCAGCAGCCACAAAACCAAGCTGACAGTGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000498447.5
CDS-3UTR CCA 90 bp TTGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTTCGTGTCATAAAAGTTaGGCTCTGACAAAGTTTCCT +
Preference number: 4 (lower is better)
Translates to: LYPEGITGLGKVKSPSLVSCHKS*ALTKFP
Trigger: AGGAAACTTTGTCAGAGCCCAACTTTTATGACACGA...AACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp TGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTATCGTGTCATAAAAGTTaGGCTCTGACAAAGTTTCCT +
Preference number: 4 (lower is better)
Translates to: CILKESQVLARSSHHRWLSCHKS*ALTKFP
Trigger: AGGAAACTTTGTCAGAGCCCAACTTTTATGACACGA...TAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp TGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATATGTGCAGGTTTCGTGTCATAAAAGTTaGGCTCTGACAAAGTTTCCT +
Preference number: 4 (lower is better)
Translates to: WQGQVTIAGYTYPGYVQVSCHKS*ALTKFP
Trigger: AGGAAACTTTGTCAGAGCCCAACTTTTATGACACGA...AACCTGCACATATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp TCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATAAAACAAACTCGCTCCTaGGAGCATAATGAGGAAAAA +
Preference number: 4 (lower is better)
Translates to: SQVLARSSHHRWLHISWIKQTRS*EHNEEK
Trigger: TTTTTCCTCATTATGCTCCCAGGAGCGAGTTTGTTT...TATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp ATTGCAAATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTTCCCCTTCACGCAGCTaGCTGGCATCAGCTAAACAG +
Preference number: 4 (lower is better)
Translates to: IANGINSRIPTSQDVFLFSPSRS*LASAKQ
Trigger: CTGTTTAGCTGATGCCAGCCAGCTGCGTGAAGGGGA...AAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATTTGCAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR CAA 72 bp TTTCTCACTGATTGTATCCTGAAGGAATCACAGGTCTaGGCAAGGTCAAGTCACCATCGCTGGTTACACATA +
Preference number: 4 (lower is better)
Translates to: FLTDCILKESQV*ARSSHHRWLHI
Trigger: TATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACAATCAGTGAGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp ATGAATAACTCAACCAGACACAGCGTGAGGTCAACAGCAAACATCTGTGTCCTTATAAAAGTTGGGCTCTaGCAAAGTTTCCTCTGTAGG +
Preference number: 4 (lower is better)
Translates to: MNNSTRHSVRSTANICVLIKVGL*QSFLCR
Trigger: CCTACAGAGGAAACTTTGTCAGAGCCCAACTTTTAT...AAGGACACAGATGTTTGCTGTTGACCTCACGCTGTGTCTGGTTGAGTTATTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp GCAAATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCGAGGTTTCATTCCAATaGGAGTTGCACACTGTCAGC +
Preference number: 4 (lower is better)
Translates to: ANGINSRIPTSQDVFLFLEVSFQ*ELHTVS
Trigger: GCTGACAGTGTGCAACTCTCATTGGAATGAAACCTC...GAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp GATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTAATTCTGTTGCTCTTTTTCTaGGGTTTCATTCCAATGAGA +
Preference number: 4 (lower is better)
Translates to: DMCRFPVSRPFEPLGDVILLLFF*GFIPMR
Trigger: TCTCATTGGAATGAAACCTCAGAAAAAGAGCAACAG...AATTACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
ENST00000498447.5
CDS-3UTR GCA 90 bp ATGAATAACTCAACCAGACACAGCGTGAGGTCAACAGCAAACATCTGTGTCCTTAGATTGTCCCCTTGTTaGTCTGTTACTACAACCCAT +
Preference number: 4 (lower is better)
Translates to: MNNSTRHSVRSTANICVLRLSPC*SVTTTH
Trigger: ATGGGTTGTAGTAACAGAGCAACAAGGGGACAATCT...AAGGACACAGATGTTTGCTGTTGACCTCACGCTGTGTCTGGTTGAGTTATTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp TCTTTTGACTTATGTGGACAATTAAACTTCCCCACTATTACCCAGTCAGCTTTTACTTCAAAGCCGGCTTaGTGTTGTTCCTGCCAGTGG +
Preference number: 4 (lower is better)
Translates to: SFDLCGQLNFPTITQSAFTSKPA*CCSCQW
Trigger: CCACTGGCAGGAACAACAGCAAGCCGGCTTTGAAGT...AAAAGCTGACTGGGTAATAGTGGGGAAGTTTAATTGTCCACATAAGTCAAAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR CAA 72 bp ACAGTAGCTCTCCTAGGCAAAGGCAAGTTTAGAAGATaGTCCCCTTGTTGCTCTGTTACTACAACCCATAAT +
Preference number: 4 (lower is better)
Translates to: TVALLGKGKFRR*SPCCSVTTTHN
Trigger: ATTATGGGTTGTAGTAACAGAGCAACAAGGGGACAATCTTCTAAACTTGCCTTTGCCTAGGAGAGCTACTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
3UTR CAA 72 bp ACATCTGAGATAGCCAGTTTGTGTAATTTGTCCAGATaGTGCCACATGTCAGTGACGAGTAAACCACTCCTA +
Preference number: 4 (lower is better)
Translates to: TSEIASLCNLSR*CHMSVTSKPLL
Trigger: TAGGAGTGGTTTACTCGTCACTGACATGTGGCACAATCTGGACAAATTACACAAACTGGCTATCTCAGATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp AATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCACTGAGGTTTCATTCCAATaGGAGTTGCACACTGTCAGC +
Preference number: 4 (lower is better)
Translates to: NGINSRIPTSQDVFLFLTEVSFQ*ELHTVS
Trigger: GCTGACAGTGTGCAACTCTCATTGGAATGAAACCTC...AGTGAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp GATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTAATTTGTGAGAAAAGTAGCTaGACACATCCATTTAACACA +
Preference number: 4 (lower is better)
Translates to: DMCRFPVSRPFEPLGDVICEKSS*THPFNT
Trigger: TGTGTTAAATGGATGTGTTCAGCTACTTTTCTCACA...AATTACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000498447.5
CDS-3UTR GCA 90 bp TCTTTTGACTTATGTGGACAATTAAACTTCCCCACTATTACCCAGTCAGCTTTTTGCCAGTGGGGTGTGTaGAATTCCCATCAGTTTGCT +
Preference number: 4 (lower is better)
Translates to: SFDLCGQLNFPTITQSAFCQWGV*NSHQFA
Trigger: AGCAAACTGATGGGAATTGCACACACCCCACTGGCA...AAAAGCTGACTGGGTAATAGTGGGGAAGTTTAATTGTCCACATAAGTCAAAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR GCA 90 bp GTTGCACACTGTCAGCTTGGTTTTGTGGCTGCTGATAGTCGTACTTTCTTGAAATTTGTCTTTGAGAGCTaGTTCCTTGGCTCAAAGTAT +
Preference number: 4 (lower is better)
Translates to: VAHCQLGFVAADSRTFLKFVFES*FLGSKY
Trigger: ATACTTTGAGCCAAGGAAGCAGCTCTCAAAGACAAA...TTTCAAGAAAGTACGACTATCAGCAGCCACAAAACCAAGCTGACAGTGTGCAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000498447.5
CDS-3UTR TCA 90 bp GCAAATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCGCATGGGAAAAGATATaGGGCTCTTTAGGAAAGCTT +
Preference number: 4 (lower is better)
Translates to: ANGINSRIPTSQDVFLFLAWEKI*GSLGKL
Trigger: AAGCTTTCCTAAAGAGCCTCATATCTTTTCCCATGC...GAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp CACTGTCAGCTTGGTTTTGTGGCTGCTGATAGTCGTACTTTCTTGAAATGGAATCTATCAAGTAAACATTaGTGGCTTCATTCCAGGCTT +
Preference number: 4 (lower is better)
Translates to: HCQLGFVAADSRTFLKWNLSSKH*WLHSRL
Trigger: AAGCCTGGAATGAAGCCACCAATGTTTACTTGATAG...ATTCCATTTCAAGAAAGTACGACTATCAGCAGCCACAAAACCAAGCTGACAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000498447.5
CDS-3UTR TCA 90 bp GCAAATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCCTGTTGCTCTTTTTCTaGGGTTTCATTCCAATGAGA +
Preference number: 4 (lower is better)
Translates to: ANGINSRIPTSQDVFLFLLLLFF*GFIPMR
Trigger: TCTCATTGGAATGAAACCTCAGAAAAAGAGCAACAG...GAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp GGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCACTGATCTGTTGCTCTTTTTCTaGGGTTTCATTCCAATGAGA +
Preference number: 4 (lower is better)
Translates to: GINSRIPTSQDVFLFLTDLLLFF*GFIPMR
Trigger: TCTCATTGGAATGAAACCTCAGAAAAAGAGCAACAG...ATCAGTGAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp TCTTTTGACTTATGTGGACAATTAAACTTCCCCACTATTACCCAGTCAGCTTTTTGTGTCAAGGCCTTTTaGGCCACTTGGAGATGTAAT +
Preference number: 4 (lower is better)
Translates to: SFDLCGQLNFPTITQSAFCVKAF*ATWRCN
Trigger: ATTACATCTCCAAGTGGCTCAAAAGGCCTTGACACA...AAAAGCTGACTGGGTAATAGTGGGGAAGTTTAATTGTCCACATAAGTCAAAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp ATTGCAAATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTTCACTGATTGTATCCTaGAGGAATCACAGGTCTTGG +
Preference number: 4 (lower is better)
Translates to: IANGINSRIPTSQDVFLFSLIVS*RNHRSW
Trigger: CCAAGACCTGTGATTCCTTCAGGATACAATCAGTGA...AAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATTTGCAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp GCAAATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCCTATCAAGTAAACATTaGTGGCTTCATTCCAGGCTT +
Preference number: 4 (lower is better)
Translates to: ANGINSRIPTSQDVFLFLLSSKH*WLHSRL
Trigger: AAGCCTGGAATGAAGCCACCAATGTTTACTTGATAG...GAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp GGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCACTGATCTATCAAGTAAACATTaGTGGCTTCATTCCAGGCTT +
Preference number: 4 (lower is better)
Translates to: GINSRIPTSQDVFLFLTDLSSKH*WLHSRL
Trigger: AAGCCTGGAATGAAGCCACCAATGTTTACTTGATAG...ATCAGTGAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp GTCTTAAACGAATCTTGCTTATCGTGTCATAAAAGTTGGGCTCTGACAAAGTTTGTCAGCTTGGTTTTGTaGCTGCTGATAGTCGTACTT +
Preference number: 4 (lower is better)
Translates to: VLNESCLSCHKSWALTKFVSLVL*LLIVVL
Trigger: AAGTACGACTATCAGCAGCCACAAAACCAAGCTGAC...AAACTTTGTCAGAGCCCAACTTTTATGACACGATAAGCAAGATTCGTTTAAGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000498447.5
CDS-3UTR CCA 90 bp TCTTTTGACTTATGTGGACAATTAAACTTCCCCACTATTACCCAGTCAGCTTTTTGGTTACACATATCCTaGATATGTGCAGGTTCCCTG +
Preference number: 4 (lower is better)
Translates to: SFDLCGQLNFPTITQSAFWLHIS*ICAGSL
Trigger: CAGGGAACCTGCACATATCCAGGATATGTGTAACCA...AAAAGCTGACTGGGTAATAGTGGGGAAGTTTAATTGTCCACATAAGTCAAAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp ATTGCAAATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTAGTTTCCTCTGTAGGTaGCACACTGAATATCCTCAT +
Preference number: 4 (lower is better)
Translates to: IANGINSRIPTSQDVFLFSFLCR*HTEYPH
Trigger: ATGAGGATATTCAGTGTGCCACCTACAGAGGAAACT...AAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATTTGCAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CCA 90 bp AATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCACTAAACAAACTCGCTCCTaGGAGCATAATGAGGAAAAA +
Preference number: 4 (lower is better)
Translates to: NGINSRIPTSQDVFLFLTKQTRS*EHNEEK
Trigger: TTTTTCCTCATTATGCTCCCAGGAGCGAGTTTGTTT...AGTGAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp AATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCACTAAAGAATCAGGAGCTTaGAACAATTACTTCTGTTGC +
Preference number: 4 (lower is better)
Translates to: NGINSRIPTSQDVFLFLTKESGA*NNYFCC
Trigger: GCAACAGAAGTAATTGTTTCAAGCTCCTGATTCTTT...AGTGAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR TCA 90 bp GTCTTAAACGAATCTTGCTTATCGTGTCATAAAAGTTGGGCTCTGACAAAGTTTAAAGAATCAGGAGCTTaGAACAATTACTTCTGTTGC +
Preference number: 4 (lower is better)
Translates to: VLNESCLSCHKSWALTKFKESGA*NNYFCC
Trigger: GCAACAGAAGTAATTGTTTCAAGCTCCTGATTCTTT...AAACTTTGTCAGAGCCCAACTTTTATGACACGATAAGCAAGATTCGTTTAAGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000498447.5
CDS-3UTR CCA 90 bp ACATTTCCAGTTGTTGTCTTAAACGAATCTTGCTTATCGTGTCATAAAAGTTGGTCGTGTCATAAAAGTTaGGCTCTGACAAAGTTTCCT +
Preference number: 4 (lower is better)
Translates to: TFPVVVLNESCLSCHKSWSCHKS*ALTKFP
Trigger: AGGAAACTTTGTCAGAGCCCAACTTTTATGACACGA...CCAACTTTTATGACACGATAAGCAAGATTCGTTTAAGACAACAACTGGAAATGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000498447.5
CDS GCA 90 bp CAGCTCCACGCGACGCCGAGGGGCTCCGCGCCGGGACCGGGCGGGTaGTCGGAGTTTCGGGGACCGCACGGGACCGAGGGCAGGCGGGCG +
Preference number: 5 (lower is better)
Translates to: QLHATPRGSAPGPGG*SEFRGPHGTEGRRA
Trigger: CGCCCGCCTGCCCTCGGTCCCGTGCGGTCCCCGAAACTCCGAGCACCCGCCCGGTCCCGGCGCGGAGCCCCTCGGCGTCGCGTGGAGCTG
80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000416469.6
ENST00000417410.7
ENST00000529505.1
CDS CCA 90 bp CCTCCCGCCGAGCCCCCGCCGCCCCGGCAGATGGGCCGCCGCAACTaGCCCGTGTGCGCTTCCGGAAGCGGGCGACTCGCAGCTCCACGC +
Preference number: 5 (lower is better)
Translates to: PPAEPPPPRQMGRRN*PVCASGSGRLAAPR
Trigger: GCGTGGAGCTGCGAGTCGCCCGCTTCCGGAAGCGCACACGGGCCAGTTGCGGCGGCCCATCTGCCGGGGCGGCGGGGGCTCGGCGGGAGG
79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000416469.6
ENST00000417410.7
ENST00000529505.1
CDS GCA 90 bp GAGCCCCCGCCGCCCCGGCAGATGGGCCGCCGCAACTGGCCCGTGTaGGCTTCCGGAAGCGGGCGACTCGCAGCTCCACGCGACGCCGAG +
Preference number: 5 (lower is better)
Translates to: EPPPPRQMGRRNWPV*ASGSGRLAAPRDAE
Trigger: CTCGGCGTCGCGTGGAGCTGCGAGTCGCCCGCTTCCGGAAGCGCACACGGGCCAGTTGCGGCGGCCCATCTGCCGGGGCGGCGGGGGCTC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000416469.6
ENST00000417410.7
ENST00000529505.1
CDS TCA 90 bp GGCGGCGAGGCTCTAGGGACGTTTCCGCCGCCCGCAGGCTGCGCGTaGTTCAGCCTCAACCCTCCCGCCGAGCCCCCGCCGCCCCGGCAG +
Preference number: 5 (lower is better)
Translates to: GGEALGTFPPPAGCA*FSLNPPAEPPPPRQ
Trigger: CTGCCGGGGCGGCGGGGGCTCGGCGGGAGGGTTGAGGCTGAATCACGCGCAGCCTGCGGGCGGCGGAAACGTCCCTAGAGCCTCGCCGCC
77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000416469.6
ENST00000417410.7
ENST00000529505.1
CDS CCA 90 bp GATTCAGCCTCAACCCTCCCGCCGAGCCCCCGCCGCCCCGGCAGATaGGCCGCCGCAACTGGCCCGTGTGCGCTTCCGGAAGCGGGCGAC +
Preference number: 5 (lower is better)
Translates to: DSASTLPPSPRRPGR*AAATGPCALPEAGD
Trigger: GTCGCCCGCTTCCGGAAGCGCACACGGGCCAGTTGCGGCGGCCCATCTGCCGGGGCGGCGGGGGCTCGGCGGGAGGGTTGAGGCTGAATC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000416469.6
ENST00000417410.7
ENST00000529505.1
CDS TCA 90 bp CTGGGCGTGGAGGCGCGGGGCTGTTATACACACGACTCCCAAACCTaGACTCTTCCAGTCTTGGCCCCGATCCTGCGAGACCTGCTCCTT +
Preference number: 5 (lower is better)
Translates to: LGVEARGCYTHDSQT*TLPVLAPILRDLLL
Trigger: AAGGAGCAGGTCTCGCAGGATCGGGGCCAAGACTGGAAGAGTTCAGGTTTGGGAGTCGTGTGTATAACAGCCCCGCGCCTCCACGCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000529505.1
CDS CCA 90 bp GGGTGGCGGCGGTGGTTATATAACTTGTCCAAAGCCACACAGGCCTaGGCGTGGAGGCGCGGGGCTGTTATACACACGACTCCCAAACCT +
Preference number: 5 (lower is better)
Translates to: GWRRWLYNLSKATQA*AWRRGAVIHTTPKP
Trigger: AGGTTTGGGAGTCGTGTGTATAACAGCCCCGCGCCTCCACGCCCAGGCCTGTGTGGCTTTGGACAAGTTATATAACCACCGCCGCCACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000529505.1
CDS-3UTR CAA 90 bp GTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCAGCTAAACAAACATCTGTGTCCTaGGAGGCGGCCTTCTCCCCT +
Preference number: 5 (lower is better)
Translates to: VSLEAAFSPSRSWLASAKQTSVS*EAAFSP
Trigger: AGGGGAGAAGGCCGCCTCCAAGGACACAGATGTTTG...TTTAGCTGATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS GCA 90 bp CACACGACTCCCAAACCTGAACTCTTCCAGTCTTGGCCCCGATCCTaGGAGACCTGCTCCTTCCGGAAGAAAGTCAAGTGGAGCAGGGAG +
Preference number: 5 (lower is better)
Translates to: HTTPKPELFQSWPRS*ETCSFRKKVKWSRE
Trigger: CTCCCTGCTCCACTTGACTTTCTTCCGGAAGGAGCAGGTCTCGCAGGATCGGGGCCAAGACTGGAAGAGTTCAGGTTTGGGAGTCGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000529505.1
CDS-3UTR CAA 90 bp GTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCAGCTAAATCCCCAATTCAGCTGTaGAAGCAGGGAAGAGACTTC +
Preference number: 5 (lower is better)
Translates to: VSLEAAFSPSRSWLASAKSPIQL*KQGRDF
Trigger: GAAGTCTCTTCCCTGCTTCAACAGCTGAATTGGGGA...TTTAGCTGATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp CCAGTGGTAGCACTACTACCGCAGAGTTGCCAACACCAATACACAGGCATCCATGTGTGGCTGCAGGGCTaGCGCTCTCCCCAATTCAGC +
Preference number: 5 (lower is better)
Translates to: PVVALLPQSCQHQYTGIHVWLQG*RSPQFS
Trigger: GCTGAATTGGGGAGAGCGCAAGCCCTGCAGCCACAC...ATGGATGCCTGTGTATTGGTGTTGGCAACTCTGCGGTAGTAGTGCTACCACTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp TCCTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGCCAGTCAGCGCCGCTTaGAAGTGTGGCTGCAGGGCT +
Preference number: 5 (lower is better)
Translates to: SWICAGSLCQGLLSHLEMPVSAA*KCGCRA
Trigger: AGCCCTGCAGCCACACTTCAAAGCGGCGCTGACTGG...CATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS CCA 90 bp GGGGCTGTTATACACACGACTCCCAAACCTGAACTCTTCCAGTCTTaGCCCCGATCCTGCGAGACCTGCTCCTTCCGGAAGAAAGTCAAG +
Preference number: 5 (lower is better)
Translates to: GAVIHTTPKPELFQS*PRSCETCSFRKKVK
Trigger: CTTGACTTTCTTCCGGAAGGAGCAGGTCTCGCAGGATCGGGGCCAAGACTGGAAGAGTTCAGGTTTGGGAGTCGTGTGTATAACAGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000529505.1
CDS-3UTR CAA 90 bp AACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCTTGCACACTGTCAGCTaGGTTTTGTGGCTGCTGATA +
Preference number: 5 (lower is better)
Translates to: NICVLGGGLLPFTQLAGILHTVS*VLWLLI
Trigger: TATCAGCAGCCACAAAACCAAGCTGACAGTGTGCAA...GATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp CATATCCTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGACCAGTCAGCGCCGCTTaGAAGTGTGGCTGCAGGGCT +
Preference number: 5 (lower is better)
Translates to: HILDMCRFPVSRPFEPLGPVSAA*KCGCRA
Trigger: AGCCCTGCAGCCACACTTCAAAGCGGCGCTGACTGG...TCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGATATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp GTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGCTGGCTGGCATCAGCTAAATGTAATTTGTCCAGATaGTGCCACATGTCAGTGACG +
Preference number: 5 (lower is better)
Translates to: VSLEAAFSPSRSWLASAKCNLSR*CHMSVT
Trigger: CGTCACTGACATGTGGCACAATCTGGACAAATTACA...TTTAGCTGATGCCAGCCAGCTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp TCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATAGTGTGGCTGCAGGGCTaGCGCTCTCCCCAATTCAGC +
Preference number: 5 (lower is better)
Translates to: SQVLARSSHHRWLHISWIVWLQG*RSPQFS
Trigger: GCTGAATTGGGGAGAGCGCAAGCCCTGCAGCCACAC...TATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS CCA 90 bp ACCCTGCTGGGCGGCACTAAAGCTCCATTTTACAGGAGAAGAAACTaGGGTGGCGGCGGTGGTTATATAACTTGTCCAAAGCCACACAGG +
Preference number: 5 (lower is better)
Translates to: TLLGGTKAPFYRRRN*GGGGGYITCPKPHR
Trigger: CCTGTGTGGCTTTGGACAAGTTATATAACCACCGCCGCCACCCCAGTTTCTTCTCCTGTAAAATGGAGCTTTAGTGCCGCCCAGCAGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000529505.1
CDS CCA 90 bp CTCACAGGCCTTCACCCAACATCCAGGAAAGCAATTCACAGGTGCTaGGCAGTCCACAGAGTCACTGAATTATCCCAACAACCCTGCTGG +
Preference number: 5 (lower is better)
Translates to: LTGLHPTSRKAIHRC*AVHRVTELSQQPCW
Trigger: CCAGCAGGGTTGTTGGGATAATTCAGTGACTCTGTGGACTGCCCAGCACCTGTGAATTGCTTTCCTGGATGTTGGGTGAAGGCCTGTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000529505.1
CDS-3UTR CAA 90 bp ACCAGTGGCAGTAATACTGCCTCGCCAGTGGTAGCACTACTACCGCAGAGTTGCTGTGATCTTGGCTCATaGCAACCTCCACCTCTCAGA +
Preference number: 5 (lower is better)
Translates to: TSGSNTASPVVALLPQSCCDLGS*QPPPLR
Trigger: TCTGAGAGGTGGAGGTTGCAATGAGCCAAGATCACA...GCAACTCTGCGGTAGTAGTGCTACCACTGGCGAGGCAGTATTACTGCCACTGGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp CTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTAAAAGCCGGCTTGCTGTaGTTCCTGCCAGTGGGGTGT +
Preference number: 5 (lower is better)
Translates to: LDMCRFPVSRPFEPLGDVKAGLL*FLPVGC
Trigger: ACACCCCACTGGCAGGAACAACAGCAAGCCGGCTTT...TACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS GCA 90 bp AGGTGCTGGGCAGTCCACAGAGTCACTGAATTATCCCAACAACCCTaGTGGGCGGCACTAAAGCTCCATTTTACAGGAGAAGAAACTGGG +
Preference number: 5 (lower is better)
Translates to: RCWAVHRVTELSQQP*WAALKLHFTGEETG
Trigger: CCCAGTTTCTTCTCCTGTAAAATGGAGCTTTAGTGCCGCCCAGCAGGGTTGTTGGGATAATTCAGTGACTCTGTGGACTGCCCAGCACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000529505.1
CDS GCA 90 bp AAGCTCACAGGCCTTCACCCAACATCCAGGAAAGCAATTCACAGGTaGTGGGCAGTCCACAGAGTCACTGAATTATCCCAACAACCCTGC +
Preference number: 5 (lower is better)
Translates to: KLTGLHPTSRKAIHR*WAVHRVTELSQQPC
Trigger: GCAGGGTTGTTGGGATAATTCAGTGACTCTGTGGACTGCCCAGCACCTGTGAATTGCTTTCCTGGATGTTGGGTGAAGGCCTGTGAGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000529505.1
CDS CCA 90 bp TGCTGGGCAGTCCACAGAGTCACTGAATTATCCCAACAACCCTGCTaGGCGGCACTAAAGCTCCATTTTACAGGAGAAGAAACTGGGGTG +
Preference number: 5 (lower is better)
Translates to: CWAVHRVTELSQQPC*AALKLHFTGEETGV
Trigger: CACCCCAGTTTCTTCTCCTGTAAAATGGAGCTTTAGTGCCGCCCAGCAGGGTTGTTGGGATAATTCAGTGACTCTGTGGACTGCCCAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000529505.1
CDS-3UTR CAA 90 bp AGGTCAACAGCAAACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGGGCAAGTTTAGAAGATaGTCCCCTTGTTGCTCTGTT +
Preference number: 5 (lower is better)
Translates to: RSTANICVLGGGLLPFTQGKFRR*SPCCSV
Trigger: AACAGAGCAACAAGGGGACAATCTTCTAAACTTGCC...CTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTTTGCTGTTGACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp TCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATAAAAGCCGGCTTGCTGTaGTTCCTGCCAGTGGGGTGT +
Preference number: 5 (lower is better)
Translates to: SQVLARSSHHRWLHISWIKAGLL*FLPVGC
Trigger: ACACCCCACTGGCAGGAACAACAGCAAGCCGGCTTT...TATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp GGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGACTTCAAAGCCGGCTaGCTGTTGTTCCTGCCAGTG +
Preference number: 5 (lower is better)
Translates to: GITGLGKVKSPSLVTHILDFKAG*LLFLPV
Trigger: CACTGGCAGGAACAACAGCAAGCCGGCTTTGAAGTC...CAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS TCA 90 bp ATCCAGGAAAGCAATTCACAGGTGCTGGGCAGTCCACAGAGTCACTaGATTATCCCAACAACCCTGCTGGGCGGCACTAAAGCTCCATTT +
Preference number: 5 (lower is better)
Translates to: IQESNSQVLGSPQSH*IIPTTLLGGTKAPF
Trigger: AAATGGAGCTTTAGTGCCGCCCAGCAGGGTTGTTGGGATAATTCAGTGACTCTGTGGACTGCCCAGCACCTGTGAATTGCTTTCCTGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000529505.1
CDS-3UTR CAA 90 bp AAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCAGTCTCAGGTGGATGTaGGGTAGAAGCAGGACAGCC +
Preference number: 5 (lower is better)
Translates to: KESQVLARSSHHRWLHISSLRWM*GRSRTA
Trigger: GGCTGTCCTGCTTCTACCCAACATCCACCTGAGACT...GGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp AAGTGTGGCTGCAGGGCTTGCGCTCTCCCCAATTCAGCTGTTGAAGCAGGGAAGAAGAAAACAGTTCTGTaGAGTCTCAGGTGGATGTTG +
Preference number: 5 (lower is better)
Translates to: KCGCRACALPNSAVEAGKKKTVL*SLRWML
Trigger: CAACATCCACCTGAGACTCAACAGAACTGTTTTCTT...CTTCCCTGCTTCAACAGCTGAATTGGGGAGAGCGCAAGCCCTGCAGCCACACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp TCCTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGACTGTCAGCTTGGTTTaGTGGCTGCTGATAGTCGTA +
Preference number: 5 (lower is better)
Translates to: SWICAGSLCQGLLSHLEMTVSLV*WLLIVV
Trigger: TACGACTATCAGCAGCCACAAAACCAAGCTGACAGT...CATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
ENST00000498447.5
CDS-3UTR CAA 90 bp AAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTTGGGTTTAACCACGTaGGCCAGGCTGGTCTCAAAC +
Preference number: 5 (lower is better)
Translates to: KESQVLARSSHHRWLHISLGLTT*ARLVSN
Trigger: GTTTGAGACCAGCCTGGCCAACGTGGTTAAACCCAA...GGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp TTGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTTTGGGTTTAACCACGTaGGCCAGGCTGGTCTCAAAC +
Preference number: 5 (lower is better)
Translates to: LYPEGITGLGKVKSPSLVLGLTT*ARLVSN
Trigger: GTTTGAGACCAGCCTGGCCAACGTGGTTAAACCCAA...AACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp TCCTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGCTCCTTTTGTTCCTTTaGGCATACATGAAGAGACCG +
Preference number: 5 (lower is better)
Translates to: SWICAGSLCQGLLSHLEMLLLFL*AYMKRP
Trigger: CGGTCTCTTCATGTATGCCAAAAGGAACAAAAGGAG...CATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp CATATCCTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGATTGCACACTGTCAGCTaGGTTTTGTGGCTGCTGATA +
Preference number: 5 (lower is better)
Translates to: HILDMCRFPVSRPFEPLGLHTVS*VLWLLI
Trigger: TATCAGCAGCCACAAAACCAAGCTGACAGTGTGCAA...TCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGATATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
ENST00000498447.5
CDS-3UTR CAA 90 bp TGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATATGTGCAGGTTACTACTACCGCAGAGTaGCCAACACCAATACACAGG +
Preference number: 5 (lower is better)
Translates to: WQGQVTIAGYTYPGYVQVTTTAE*PTPIHR
Trigger: CCTGTGTATTGGTGTTGGCAACTCTGCGGTAGTAGT...AACCTGCACATATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp AGGTCAACAGCAAACATCTGTGTCCTTGGAGGCGGCCTTCTCCCCTTCACGCAGGGTAAAAACATTTCATaGTACAGTACAGCATGGGAA +
Preference number: 5 (lower is better)
Translates to: RSTANICVLGGGLLPFTQGKNIS*YSTAWE
Trigger: TTCCCATGCTGTACTGTACAATGAAATGTTTTTACC...CTGCGTGAAGGGGAGAAGGCCGCCTCCAAGGACACAGATGTTTGCTGTTGACCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp TGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTATGTGATCTTGGCTCATaGCAACCTCCACCTCTCAGA +
Preference number: 5 (lower is better)
Translates to: CILKESQVLARSSHHRWLCDLGS*QPPPLR
Trigger: TCTGAGAGGTGGAGGTTGCAATGAGCCAAGATCACA...TAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp TGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATATGTGCAGGTTACTGTCAGCTTGGTTTaGTGGCTGCTGATAGTCGTA +
Preference number: 5 (lower is better)
Translates to: WQGQVTIAGYTYPGYVQVTVSLV*WLLIVV
Trigger: TACGACTATCAGCAGCCACAAAACCAAGCTGACAGT...AACCTGCACATATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp TCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATAACTGTCAGCTTGGTTTaGTGGCTGCTGATAGTCGTA +
Preference number: 5 (lower is better)
Translates to: SQVLARSSHHRWLHISWITVSLV*WLLIVV
Trigger: TACGACTATCAGCAGCCACAAAACCAAGCTGACAGT...TATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp TTGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTTTGCACACTGTCAGCTaGGTTTTGTGGCTGCTGATA +
Preference number: 5 (lower is better)
Translates to: LYPEGITGLGKVKSPSLVLHTVS*VLWLLI
Trigger: TATCAGCAGCCACAAAACCAAGCTGACAGTGTGCAA...AACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp TTGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTAAGGAATCACAGGTCTaGGCAAGGTCAAGTCACCAT +
Preference number: 5 (lower is better)
Translates to: LYPEGITGLGKVKSPSLVKESQV*ARSSHH
Trigger: ATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTT...AACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACAA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp AAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCAAGGAATCACAGGTCTaGGCAAGGTCAAGTCACCAT +
Preference number: 5 (lower is better)
Translates to: KESQVLARSSHHRWLHISKESQV*ARSSHH
Trigger: ATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTT...GGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp GATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTAATTACTACTACCGCAGAGTaGCCAACACCAATACACAGG +
Preference number: 5 (lower is better)
Translates to: DMCRFPVSRPFEPLGDVITTTAE*PTPIHR
Trigger: CCTGTGTATTGGTGTTGGCAACTCTGCGGTAGTAGT...AATTACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp TATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACTCCTTTTGTTCCTTTaGGCATACATGAAGAGACCG +
Preference number: 5 (lower is better)
Translates to: YPEGITGLGKVKSPSLVTLLLFL*AYMKRP
Trigger: CGGTCTCTTCATGTATGCCAAAAGGAACAAAAGGAG...TGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp GCACACTGTCAGCTTGGTTTTGTGGCTGCTGATAGTCGTACTTTCTTGAAATGGTTGCACACTGTCAGCTaGGTTTTGTGGCTGCTGATA +
Preference number: 5 (lower is better)
Translates to: AHCQLGFVAADSRTFLKWLHTVS*VLWLLI
Trigger: TATCAGCAGCCACAAAACCAAGCTGACAGTGTGCAA...CCATTTCAAGAAAGTACGACTATCAGCAGCCACAAAACCAAGCTGACAGTGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000498447.5
CDS-3UTR CAA 90 bp TGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTAAAGATTGTCCCCTTGTaGCTCTGTTACTACAACCCA +
Preference number: 5 (lower is better)
Translates to: CILKESQVLARSSHHRWLKIVPL*LCYYNP
Trigger: TGGGTTGTAGTAACAGAGCAACAAGGGGACAATCTT...TAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp TCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACACATATCCTGGATATGTAATTTGTCCAGATaGTGCCACATGTCAGTGACG +
Preference number: 5 (lower is better)
Translates to: SQVLARSSHHRWLHISWICNLSR*CHMSVT
Trigger: CGTCACTGACATGTGGCACAATCTGGACAAATTACA...TATCCAGGATATGTGTAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp GGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCACTGATGACTTCAAAGCCGGCTaGCTGTTGTTCCTGCCAGTG +
Preference number: 5 (lower is better)
Translates to: GINSRIPTSQDVFLFLTDDFKAG*LLFLPV
Trigger: CACTGGCAGGAACAACAGCAAGCCGGCTTTGAAGTC...ATCAGTGAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp CATATCCTGGATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAAAGAAAACAGTTCTGTaGAGTCTCAGGTGGATGTTG +
Preference number: 5 (lower is better)
Translates to: HILDMCRFPVSRPFEPLGKKTVL*SLRWML
Trigger: CAACATCCACCTGAGACTCAACAGAACTGTTTTCTT...TCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATCCAGGATATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp GATATGTGCAGGTTCCCTGTGTCAAGGCCTTTTGAGCCACTTGGAGATGTAATTAAGATTGTCCCCTTGTaGCTCTGTTACTACAACCCA +
Preference number: 5 (lower is better)
Translates to: DMCRFPVSRPFEPLGDVIKIVPL*LCYYNP
Trigger: TGGGTTGTAGTAACAGAGCAACAAGGGGACAATCTT...AATTACATCTCCAAGTGGCTCAAAAGGCCTTGACACAGGGAACCTGCACATATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp TCTTTTGACTTATGTGGACAATTAAACTTCCCCACTATTACCCAGTCAGCTTTTCAAACATCTGTGTCCTaGGAGGCGGCCTTCTCCCCT +
Preference number: 5 (lower is better)
Translates to: SFDLCGQLNFPTITQSAFQTSVS*EAAFSP
Trigger: AGGGGAGAAGGCCGCCTCCAAGGACACAGATGTTTG...AAAAGCTGACTGGGTAATAGTGGGGAAGTTTAATTGTCCACATAAGTCAAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp TTGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTTCTGAGATAGCCAGTTaGTGTAATTTGTCCAGATTG +
Preference number: 5 (lower is better)
Translates to: LYPEGITGLGKVKSPSLVSEIAS*CNLSRL
Trigger: CAATCTGGACAAATTACACAAACTGGCTATCTCAGA...AACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp TCTTTTGACTTATGTGGACAATTAAACTTCCCCACTATTACCCAGTCAGCTTTTAGTCTCAGGTGGATGTaGGGTAGAAGCAGGACAGCC +
Preference number: 5 (lower is better)
Translates to: SFDLCGQLNFPTITQSAFSLRWM*GRSRTA
Trigger: GGCTGTCCTGCTTCTACCCAACATCCACCTGAGACT...AAAAGCTGACTGGGTAATAGTGGGGAAGTTTAATTGTCCACATAAGTCAAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp TGTATCCTGAAGGAATCACAGGTCTTGGCAAGGTCAAGTCACCATCGCTGGTTACTCATAATTCTCCTTTaGTTCCTTTTGGCATACATG +
Preference number: 5 (lower is better)
Translates to: CILKESQVLARSSHHRWLLIILL*FLLAYM
Trigger: CATGTATGCCAAAAGGAACAAAAGGAGAATTATGAG...TAACCAGCGATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTTCAGGATACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp AGCTTAGCATGCCAAAAATGCAGCAGTAACCAGACAGCAACATTCACCAGTGGCGAAAGAATCAGGAGCTaGAAACAATTACTTCTGTTG +
Preference number: 5 (lower is better)
Translates to: SLACQKCSSNQTATFTSGERIRS*KQLLLL
Trigger: CAACAGAAGTAATTGTTTCAAGCTCCTGATTCTTTC...GCCACTGGTGAATGTTGCTGTCTGGTTACTGCTGCATTTTTGGCATGCTAAGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp AATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCACTTCCCCAATTCAGCTGTaGAAGCAGGGAAGAGACTTC +
Preference number: 5 (lower is better)
Translates to: NGINSRIPTSQDVFLFLTSPIQL*KQGRDF
Trigger: GAAGTCTCTTCCCTGCTTCAACAGCTGAATTGGGGA...AGTGAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp GTTGCACACTGTCAGCTTGGTTTTGTGGCTGCTGATAGTCGTACTTTCTTGAAAAAGCCAAATATCCTTTaGGCATACATGAAGAGACCG +
Preference number: 5 (lower is better)
Translates to: VAHCQLGFVAADSRTFLKKPNIL*AYMKRP
Trigger: CGGTCTCTTCATGTATGCCAAAAGGATATTTGGCTT...TTTCAAGAAAGTACGACTATCAGCAGCCACAAAACCAAGCTGACAGTGTGCAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000498447.5
CDS-3UTR CAA 90 bp GGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCACTGATCTCCTTTTGTTCCTTTaGGCATACATGAAGAGACCG +
Preference number: 5 (lower is better)
Translates to: GINSRIPTSQDVFLFLTDLLLFL*AYMKRP
Trigger: CGGTCTCTTCATGTATGCCAAAAGGAACAAAAGGAG...ATCAGTGAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp TCTTTTGACTTATGTGGACAATTAAACTTCCCCACTATTACCCAGTCAGCTTTTCGGTGGTTATATAACTaGTCCAAAGCCACACAGGCC +
Preference number: 5 (lower is better)
Translates to: SFDLCGQLNFPTITQSAFRWLYN*SKATQA
Trigger: GGCCTGTGTGGCTTTGGACAAGTTATATAACCACCG...AAAAGCTGACTGGGTAATAGTGGGGAAGTTTAATTGTCCACATAAGTCAAAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000417410.7
CDS-3UTR CAA 90 bp ATGAATAACTCAACCAGACACAGCGTGAGGTCAACAGCAAACATCTGTGTCCTTTCTGAGATAGCCAGTTaGTGTAATTTGTCCAGATTG +
Preference number: 5 (lower is better)
Translates to: MNNSTRHSVRSTANICVLSEIAS*CNLSRL
Trigger: CAATCTGGACAAATTACACAAACTGGCTATCTCAGA...AAGGACACAGATGTTTGCTGTTGACCTCACGCTGTGTCTGGTTGAGTTATTCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp ATTGCAAATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTACTGTCAGCTTGGTTTaGTGGCTGCTGATAGTCGTA +
Preference number: 5 (lower is better)
Translates to: IANGINSRIPTSQDVFLFTVSLV*WLLIVV
Trigger: TACGACTATCAGCAGCCACAAAACCAAGCTGACAGT...AAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATTTGCAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp ATTGCAAATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTAAGGAATCACAGGTCTaGGCAAGGTCAAGTCACCAT +
Preference number: 5 (lower is better)
Translates to: IANGINSRIPTSQDVFLFKESQV*ARSSHH
Trigger: ATGGTGACTTGACCTTGCCAAGACCTGTGATTCCTT...AAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATTTGCAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp GGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCACTGATCTCATAATTCTCCTTTaGTTCCTTTTGGCATACATG +
Preference number: 5 (lower is better)
Translates to: GINSRIPTSQDVFLFLTDLIILL*FLLAYM
Trigger: CATGTATGCCAAAAGGAACAAAAGGAGAATTATGAG...ATCAGTGAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp GCAAATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCGAAAGAATCAGGAGCTaGAAACAATTACTTCTGTTG +
Preference number: 5 (lower is better)
Translates to: ANGINSRIPTSQDVFLFLERIRS*KQLLLL
Trigger: CAACAGAAGTAATTGTTTCAAGCTCCTGATTCTTTC...GAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATTTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp GTCTTAAACGAATCTTGCTTATCGTGTCATAAAAGTTGGGCTCTGACAAAGTTTCTTTCTATTTTGTCTTaGAGAGCTGCTTCCTTGGCT +
Preference number: 5 (lower is better)
Translates to: VLNESCLSCHKSWALTKFLSILS*RAASLA
Trigger: AGCCAAGGAAGCAGCTCTCAAAGACAAAATAGAAAG...AAACTTTGTCAGAGCCCAACTTTTATGACACGATAAGCAAGATTCGTTTAAGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000498447.5
CDS-3UTR CAA 90 bp AATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTCTCACTGAAAGAATCAGGAGCTaGAAACAATTACTTCTGTTG +
Preference number: 5 (lower is better)
Translates to: NGINSRIPTSQDVFLFLTERIRS*KQLLLL
Trigger: CAACAGAAGTAATTGTTTCAAGCTCCTGATTCTTTC...AGTGAGAAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000414154.6
ENST00000417410.7
ENST00000438528.7
CDS-3UTR CAA 90 bp GTCTTAAACGAATCTTGCTTATCGTGTCATAAAAGTTGGGCTCTGACAAAGTTTGAAAGAATCAGGAGCTaGAAACAATTACTTCTGTTG +
Preference number: 5 (lower is better)
Translates to: VLNESCLSCHKSWALTKFERIRS*KQLLLL
Trigger: CAACAGAAGTAATTGTTTCAAGCTCCTGATTCTTTC...AAACTTTGTCAGAGCCCAACTTTTATGACACGATAAGCAAGATTCGTTTAAGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000498447.5
CDS-3UTR CAA 90 bp ATTGCAAATGGCATAAACTCCAGGATTCCCACTTCCCAAGATGTGTTTTTATTTGGTAAAAACATTTCATaGTACAGTACAGCATGGGAA +
Preference number: 5 (lower is better)
Translates to: IANGINSRIPTSQDVFLFGKNIS*YSTAWE
Trigger: TTCCCATGCTGTACTGTACAATGAAATGTTTTTACC...AAATAAAAACACATCTTGGGAAGTGGGAATCCTGGAGTTTATGCCATTTGCAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000438528.7
CDS GCA 72 bp GGGCTGCCGGCTCCGGAGGCGGCACGCGGCCAGCGCTaGTCCGCTCCGGGGCTCTTTACCCCGGAGTCGGGG +
Preference number: 6 (lower is better)
Translates to: GLPAPEAARGQR*SAPGLFTPESG
Trigger: CCCCGACTCCGGGGTAAAGAGCCCCGGAGCGGAGCAGCGCTGGCCGCGTGCCGCCTCCGGAGCCGGCAGCCC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000414154.6
CDS CCA 72 bp GAGCCCCCGCCGCCCCGGCAGATGGGCCGCCGCAACTaGCCCGTGTGCGCTTCCGGAAGCGGGCGACTCGCA +
Preference number: 6 (lower is better)
Translates to: EPPPPRQMGRRN*PVCASGSGRLA
Trigger: TGCGAGTCGCCCGCTTCCGGAAGCGCACACGGGCCAGTTGCGGCGGCCCATCTGCCGGGGCGGCGGGGGCTC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000416469.6
ENST00000417410.7
ENST00000529505.1
CDS GCA 72 bp CCGCCCCGGCAGATGGGCCGCCGCAACTGGCCCGTGTaGGCTTCCGGAAGCGGGCGACTCGCAGCTCCACGC +
Preference number: 6 (lower is better)
Translates to: PPRQMGRRNWPV*ASGSGRLAAPR
Trigger: GCGTGGAGCTGCGAGTCGCCCGCTTCCGGAAGCGCACACGGGCCAGTTGCGGCGGCCCATCTGCCGGGGCGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000416469.6
ENST00000417410.7
ENST00000529505.1
CDS CCA 72 bp TCAACCCTCCCGCCGAGCCCCCGCCGCCCCGGCAGATaGGCCGCCGCAACTGGCCCGTGTGCGCTTCCGGAA +
Preference number: 6 (lower is better)
Translates to: STLPPSPRRPGR*AAATGPCALPE
Trigger: TTCCGGAAGCGCACACGGGCCAGTTGCGGCGGCCCATCTGCCGGGGCGGCGGGGGCTCGGCGGGAGGGTTGA
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000416469.6
ENST00000417410.7
ENST00000529505.1
CDS TCA 72 bp GCTCTAGGGACGTTTCCGCCGCCCGCAGGCTGCGCGTaGTTCAGCCTCAACCCTCCCGCCGAGCCCCCGCCG +
Preference number: 6 (lower is better)
Translates to: ALGTFPPPAGCA*FSLNPPAEPPP
Trigger: CGGCGGGGGCTCGGCGGGAGGGTTGAGGCTGAATCACGCGCAGCCTGCGGGCGGCGGAAACGTCCCTAGAGC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000416469.6
ENST00000417410.7
ENST00000529505.1
CDS CAA 72 bp GAGAAGAAACTGGGGTGGCGGCGGTGGTTATATAACTaGTCCAAAGCCACACAGGCCTGGGCGTGGAGGCGC +
Preference number: 6 (lower is better)
Translates to: EKKLGWRRWLYN*SKATQAWAWRR
Trigger: GCGCCTCCACGCCCAGGCCTGTGTGGCTTTGGACAAGTTATATAACCACCGCCGCCACCCCAGTTTCTTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000529505.1
CDS GCA 72 bp CATGGGGCTGAACTCTTCCAGTCTTGGCCCCGATCCTaGGAGACCTGCTCCTTCCGGAAGAAAGTCAAGTGG +
Preference number: 6 (lower is better)
Translates to: HGAELFQSWPRS*ETCSFRKKVKW
Trigger: CCACTTGACTTTCTTCCGGAAGGAGCAGGTCTCGCAGGATCGGGGCCAAGACTGGAAGAGTTCAGCCCCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000416469.6
CDS GCA 72 bp CCCAAACCTGAACTCTTCCAGTCTTGGCCCCGATCCTaGGAGACCTGCTCCTTCCGGAAGAAAGTCAAGTGG +
Preference number: 6 (lower is better)
Translates to: PKPELFQSWPRS*ETCSFRKKVKW
Trigger: CCACTTGACTTTCTTCCGGAAGGAGCAGGTCTCGCAGGATCGGGGCCAAGACTGGAAGAGTTCAGGTTTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000529505.1
CDS CCA 72 bp ATACACACGACTCCCAAACCTGAACTCTTCCAGTCTTaGCCCCGATCCTGCGAGACCTGCTCCTTCCGGAAG +
Preference number: 6 (lower is better)
Translates to: IHTTPKPELFQS*PRSCETCSFRK
Trigger: CTTCCGGAAGGAGCAGGTCTCGCAGGATCGGGGCCAAGACTGGAAGAGTTCAGGTTTGGGAGTCGTGTGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000529505.1
CDS CCA 72 bp CGGTGGTTATATAACTTGTCCAAAGCCACACAGGCCTaGGCGTGGAGGCGCGGGGCTGTTATACACACGACT +
Preference number: 6 (lower is better)
Translates to: RWLYNLSKATQA*AWRRGAVIHTT
Trigger: AGTCGTGTGTATAACAGCCCCGCGCCTCCACGCCCAGGCCTGTGTGGCTTTGGACAAGTTATATAACCACCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000529505.1
CDS TCA 72 bp AGCAATTCACAGGTGCTGGGCAGTCCACAGAGTCACTaGATTATCCCAACAACCCTGCTGGGCGGCACTAAA +
Preference number: 6 (lower is better)
Translates to: SNSQVLGSPQSH*IIPTTLLGGTK
Trigger: TTTAGTGCCGCCCAGCAGGGTTGTTGGGATAATTCAGTGACTCTGTGGACTGCCCAGCACCTGTGAATTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000529505.1
CDS GCA 72 bp GGCCTTCACCCAACATCCAGGAAAGCAATTCACAGGTaGTGGGCAGTCCACAGAGTCACTGAATTATCCCAA +
Preference number: 6 (lower is better)
Translates to: GLHPTSRKAIHR*WAVHRVTELSQ
Trigger: TTGGGATAATTCAGTGACTCTGTGGACTGCCCAGCACCTGTGAATTGCTTTCCTGGATGTTGGGTGAAGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000529505.1
CDS CCA 72 bp TCCATTTTACAGGAGAAGAAACTGGGGTGGCGGCGGTaGTTATATAACTTGTCCAAAGCCACACAGGCCTGG +
Preference number: 6 (lower is better)
Translates to: SILQEKKLGWRR*LYNLSKATQAW
Trigger: CCAGGCCTGTGTGGCTTTGGACAAGTTATATAACCACCGCCGCCACCCCAGTTTCTTCTCCTGTAAAATGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000529505.1
CDS GCA 72 bp GCAGTCCACAGAGTCACTGAATTATCCCAACAACCCTaGTGGGCGGCACTAAAGCTCCATTTTACAGGAGAA +
Preference number: 6 (lower is better)
Translates to: AVHRVTELSQQP*WAALKLHFTGE
Trigger: TTCTCCTGTAAAATGGAGCTTTAGTGCCGCCCAGCAGGGTTGTTGGGATAATTCAGTGACTCTGTGGACTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000529505.1
CDS CCA 72 bp GGCGGCACTAAAGCTCCATTTTACAGGAGAAGAAACTaGGGTGGCGGCGGTGGTTATATAACTTGTCCAAAG +
Preference number: 6 (lower is better)
Translates to: GGTKAPFYRRRN*GGGGGYITCPK
Trigger: CTTTGGACAAGTTATATAACCACCGCCGCCACCCCAGTTTCTTCTCCTGTAAAATGGAGCTTTAGTGCCGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000529505.1
CDS CCA 72 bp GTCCACAGAGTCACTGAATTATCCCAACAACCCTGCTaGGCGGCACTAAAGCTCCATTTTACAGGAGAAGAA +
Preference number: 6 (lower is better)
Translates to: VHRVTELSQQPC*AALKLHFTGEE
Trigger: TTCTTCTCCTGTAAAATGGAGCTTTAGTGCCGCCCAGCAGGGTTGTTGGGATAATTCAGTGACTCTGTGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000529505.1
CDS CCA 72 bp CTTCACCCAACATCCAGGAAAGCAATTCACAGGTGCTaGGCAGTCCACAGAGTCACTGAATTATCCCAACAA +
Preference number: 6 (lower is better)
Translates to: LHPTSRKAIHRC*AVHRVTELSQQ
Trigger: TTGTTGGGATAATTCAGTGACTCTGTGGACTGCCCAGCACCTGTGAATTGCTTTCCTGGATGTTGGGTGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000417410.7
ENST00000529505.1