Pregenerated sensors for SMIM1 (Homo sapiens)
Ensembl gene IDs: ENSG00000235169Ensembl transcript IDs: ENST00000444870.7, ENST00000452264.1, ENST00000561886.2, ENST00000642557.4
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGCCAGCCTGCTATGGCTaGCAGGCTGCCCTCAGGCCC | + |
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Preference number: 2 (lower is better) Translates to: SPPTANQREGQRLRFAELPACYG*QAALRP Trigger: GGGCCTGAGGGCAGCCTGCCAGCCATAGCAGGCTGG...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| 3UTR-3UTR GCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGAGGGAGACACCAGCCTaGTATGGCTGGCAGGCTGCC | + |
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Preference number: 2 (lower is better) Translates to: SPPTANQREGQRLRFAELRETPA*YGWQAA Trigger: GGCAGCCTGCCAGCCATAGCAGGCTGGTGTCTCCCT...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| 3UTR-3UTR CCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGGACACCAGCCTGCTATaGCTGGCAGGCTGCCCTCAG | + |
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Preference number: 2 (lower is better) Translates to: SPPTANQREGQRLRFAELDTSLL*LAGCPQ Trigger: CTGAGGGCAGCCTGCCAGCCATAGCAGGCTGGTGTC...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| 3UTR GCA 72 bp | ACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTaGTGGACCGTGGGCTCCCAGCCAGGATGGGGTGGA | + |
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Preference number: 3 (lower is better) Translates to: TRGKAKGCGLLS*WTVGSQPGWGG Trigger: TCCACCCCATCCTGGCTGGGAGCCCACGGTCCAGCAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR TCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGGGGCAGGTCGTGGGCTaGGGTGCGGCAGACGCCTCG | + |
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Preference number: 4 (lower is better) Translates to: SPPTANQREGQRLRFAELGQVVG*GAADAS Trigger: CGAGGCGTCTGCCGCACCTCAGCCCACGACCTGCCC...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR CCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGGTTGCGGTCAGGGCCTaGCCAGCGGCCCGCACCTCC | + |
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Preference number: 4 (lower is better) Translates to: SPPTANQREGQRLRFAELVAVRA*PAARTS Trigger: GGAGGTGCGGGCCGCTGGCCAGGCCCTGACCGCAAC...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR CCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGCAGCGGGGCAGGTCGTaGGCTGAGGTGCGGCAGACG | + |
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Preference number: 4 (lower is better) Translates to: SPPTANQREGQRLRFAELQRGRS*AEVRQT Trigger: CGTCTGCCGCACCTCAGCCCACGACCTGCCCCGCTG...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR CCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGGAGGGCTGGGGCCTCTaGGCCAGGTTGCGGTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: SPPTANQREGQRLRFAELEGWGL*ARLRSG Trigger: CCCTGACCGCAACCTGGCCCAGAGGCCCCAGCCCTC...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR GCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGGGTCGTGGGCTGAGGTaGGGCAGACGCCTCGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: SPPTANQREGQRLRFAELGRGLR*GRRLEP Trigger: AGGCTCGAGGCGTCTGCCGCACCTCAGCCCACGACC...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR TCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGACACAGCCCCTAGGCTaGCTCCGTCCCTGCTGCCGT | + |
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Preference number: 4 (lower is better) Translates to: SPPTANQREGQRLRFAELTQPLG*LRPCCR Trigger: ACGGCAGCAGGGACGGAGTCAGCCTAGGGGCTGTGT...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR GCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGTCTCCTGGGGCTGCATaGTGTGGGGCTGCAGCGGGA | + |
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Preference number: 4 (lower is better) Translates to: SPPTANQREGQRLRFAELSPGAA*CGAAAG Trigger: TCCCGCTGCAGCCCCACAGCATGCAGCCCCAGGAGA...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR GCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGTGGCTCTCCTGGGGCTaGATGCTGTGGGGCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: SPPTANQREGQRLRFAELWLSWG*MLWGCS Trigger: GCTGCAGCCCCACAGCATGCAGCCCCAGGAGAGCCA...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR GCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGCTCAGGCCCCTCACCTaGGGCAGCGTGAGGCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: SPPTANQREGQRLRFAELLRPLT*GSVRPL Trigger: AAGAGGCCTCACGCTGCCGCAGGTGAGGGGCCTGAG...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR CCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGACCTTGCCTGAGGGCTaGGGCCTCTGGGCCAGGTTG | + |
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Preference number: 4 (lower is better) Translates to: SPPTANQREGQRLRFAELTLPEG*GLWARL Trigger: CAACCTGGCCCAGAGGCCCCAGCCCTCAGGCAAGGT...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR CCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGTGGACGTGGCTCTCCTaGGGCTGCATGCTGTGGGGC | + |
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Preference number: 4 (lower is better) Translates to: SPPTANQREGQRLRFAELWTWLS*GCMLWG Trigger: GCCCCACAGCATGCAGCCCCAGGAGAGCCACGTCCA...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR TCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGTCACCTGCGGCAGCGTaGGGCCTCTTCTGTGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: SPPTANQREGQRLRFAELSPAAA*GLFCAG Trigger: TCCAGCACAGAAGAGGCCTCACGCTGCCGCAGGTGA...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR TCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGAAGGCTGCGGTTTGCTaGGCTGCTGGACCGTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: SPPTANQREGQRLRFAELKAAVC*AAGPWA Trigger: AGCCCACGGTCCAGCAGCTCAGCAAACCGCAGCCTT...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR GCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGTGCGGTTTGCTGAGCTaGTGGACCGTGGGCTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: SPPTANQREGQRLRFAELCGLLS*WTVGSQ Trigger: CTGGGAGCCCACGGTCCAGCAGCTCAGCAAACCGCA...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR CCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGGCGGGGCCTTCTCGGTaGGGAGATCAAGACAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: SPPTANQREGQRLRFAELAGPSR*GDQDRW Trigger: CCACCTGTCTTGATCTCCCCACCGAGAAGGCCCCGC...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR CCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGGGTTTGCTGAGCTGCTaGACCGTGGGCTCCCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: SPPTANQREGQRLRFAELGLLSC*TVGSQP Trigger: TGGCTGGGAGCCCACGGTCCAGCAGCTCAGCAAACC...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR GCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGTTCACCGGAGAACCTTaGCTGAGGGCTGGGGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: SPPTANQREGQRLRFAELFTGEP*LRAGAS Trigger: AGAGGCCCCAGCCCTCAGGCAAGGTTCTCCGGTGAA...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR GCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGGTGAGGCCTCTTCTGTaGTGGACACAGCCCCTAGGC | + |
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Preference number: 4 (lower is better) Translates to: SPPTANQREGQRLRFAELVRPLL*WTQPLG Trigger: GCCTAGGGGCTGTGTCCAGCACAGAAGAGGCCTCAC...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR GCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGGGGAAGGCCAAAGGCTaGGGTTTGCTGAGCTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: SPPTANQREGQRLRFAELGKAKG*GLLSCW Trigger: CCAGCAGCTCAGCAAACCGCAGCCTTTGGCCTTCCC...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR CCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGCAGGTGGCCAGGCTGTaGCTTCACCGGAGAACCTTG | + |
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Preference number: 4 (lower is better) Translates to: SPPTANQREGQRLRFAELQVARL*LHRRTL Trigger: CAAGGTTCTCCGGTGAAGCCACAGCCTGGCCACCTG...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR CCA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGGGAGATCAAGACAGGTaGCCAGGCTGTGGCTTCACC | + |
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Preference number: 4 (lower is better) Translates to: SPPTANQREGQRLRFAELGDQDR*PGCGFT Trigger: GGTGAAGCCACAGCCTGGCCACCTGTCTTGATCTCC...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS GCA 90 bp | AGAAGAGGGCCACGCCGCCCAGCACCTTCATGGCGATGCCCAGCTTaGCCGTGCACAGCCTCTGGGAGATCCTGCGGCAGCGTGAGGCCT | + |
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Preference number: 5 (lower is better) Translates to: RRGPRRPAPSWRCPA*PCTASGRSCGSVRP Trigger: AGGCCTCACGCTGCCGCAGGATCTCCCAGAGGCTGTGCACGGGCAAGCTGGGCATCGCCATGAAGGTGCTGGGCGGCGTGGCCCTCTTCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000444870.7 ENST00000642557.4 |
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| CDS-3UTR CAA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGCTTCACCGGAGAACCTaGCCTGAGGGCTGGGGCCTC | + |
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Preference number: 5 (lower is better) Translates to: SPPTANQREGQRLRFAELLHRRT*PEGWGL Trigger: GAGGCCCCAGCCCTCAGGCAAGGTTCTCCGGTGAAG...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS-3UTR CAA 90 bp | TCCCCGCCCACAGCCAACCAGAGGGAAGGCCAAAGGCTGCGGTTTGCTGAGCTGGCCAAAGGCTGCGGTTaGCTGAGCTGCTGGACCGTG | + |
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Preference number: 5 (lower is better) Translates to: SPPTANQREGQRLRFAELAKGCG*LSCWTV Trigger: CACGGTCCAGCAGCTCAGCAAACCGCAGCCTTTGGC...CAGCTCAGCAAACCGCAGCCTTTGGCCTTCCCTCTGGTTGGCTGTGGGCGGGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561886.2 |
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| CDS TCA 90 bp | TGCGGCAGCGTGAGGCCTCTTCTGTGCTGGACACAGCCCCTAGGCTaGCTCCGTCCCTGCTGCCGTCCTCCCACCTACTATAGTGGACGT | + |
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Preference number: 5 (lower is better) Translates to: CGSVRPLLCWTQPLG*LRPCCRPPTYYSGR Trigger: ACGTCCACTATAGTAGGTGGGAGGACGGCAGCAGGGACGGAGTCAGCCTAGGGGCTGTGTCCAGCACAGAAGAGGCCTCACGCTGCCGCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000444870.7 ENST00000561886.2 ENST00000642557.4 |
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| CDS CCA 72 bp | GAGAAGCCGATCTTGCTAAGGGCCGGGAAGGGAAAGTaGCTGGTGTCGGGGGTCCCCAGCAGCCACAAGGAG | + |
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Preference number: 6 (lower is better) Translates to: EKPILLRAGKGK*LVSGVPSSHKE Trigger: CTCCTTGTGGCTGCTGGGGACCCCCGACACCAGCCACTTTCCCTTCCCGGCCCTTAGCAAGATCGGCTTCTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000452264.1 |
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| CDS TCA 72 bp | GTGAGGCCTCTTCTGTGCTGGACACAGCCCCTAGGCTaGCTCCGTCCCTGCTGCCGTCCTCCCACCTACTAT | + |
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Preference number: 6 (lower is better) Translates to: VRPLLCWTQPLG*LRPCCRPPTYY Trigger: ATAGTAGGTGGGAGGACGGCAGCAGGGACGGAGTCAGCCTAGGGGCTGTGTCCAGCACAGAAGAGGCCTCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000444870.7 ENST00000561886.2 ENST00000642557.4 |
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