Pregenerated sensors for SMCP (Homo sapiens)
Ensembl gene IDs: ENSG00000163206Ensembl transcript IDs: ENST00000368765.4
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGGAAAGATGATTCTAGCCTCTTCATCCTCCCATTTCCAGATGGAGGCCTCCCTCCCCACCCTACAAAGTaGAAGGCATGGCCCCAGGGA | + |
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Preference number: 2 (lower is better) Translates to: RKDDSSLFILPFPDGGLPPHPTK*KAWPQG Trigger: TCCCTGGGGCCATGCCTTTCACTTTGTAGGGTGGGG...AGGGAGGCCTCCATCTGGAAATGGGAGGATGAAGAGGCTAGAATCATCTTTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| 3UTR-3UTR TCA 90 bp | TTTCTGTGCTGTCTAAATGTCAGGATCACTAGGAAAGATGATTCTAGCCTCTTCAACACAGGTCTAGCCTaGCTCTCAGTAATCCCCCAC | + |
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Preference number: 2 (lower is better) Translates to: FLCCLNVRITRKDDSSLFNTGLA*LSVIPH Trigger: GTGGGGGATTACTGAGAGTCAGGCTAGACCTGTGTT...GAAGAGGCTAGAATCATCTTTCCTAGTGATCCTGACATTTAGACAGCACAGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| 3UTR GCA 72 bp | CTCTCATTGGGTGGAAATGGTAGTCACTGTGAAAACTaGTTCTCTAAACACAGGTCTAGCCTGACTCTCAGT | + |
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Preference number: 3 (lower is better) Translates to: LSLGGNGSHCEN*FSKHRSSLTLS Trigger: ACTGAGAGTCAGGCTAGACCTGTGTTTAGAGAAGCAGTTTTCACAGTGACTACCATTTCCACCCAATGAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR TCA 90 bp | GATTCTAGCCTCTTCATCCTCCCATTTCCAGATGGAGGCCTCCCTAGGGTAGGGCCCCACCCTACAAAGTaGAAGGCATGGCCCCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: DSSLFILPFPDGGLPRVGPHPTK*KAWPQG Trigger: TCCCTGGGGCCATGCCTTTCACTTTGTAGGGTGGGG...CCCTACCCTAGGGAGGCCTCCATCTGGAAATGGGAGGATGAAGAGGCTAGAATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR CCA 90 bp | GATTCTAGCCTCTTCATCCTCCCATTTCCAGATGGAGGCCTCCCTAGGGTAGGGGGCCTGAATGCAGCATaGGGGTTTTGGCTGGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: DSSLFILPFPDGGLPRVGGLNAA*GFWLAA Trigger: TGCTGCCAGCCAAAACCCCCATGCTGCATTCAGGCC...CCCTACCCTAGGGAGGCCTCCATCTGGAAATGGGAGGATGAAGAGGCTAGAATC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR TCA 90 bp | CTCAGTAATCCCCCACCCTACAAAGTGAAAGGCATGGCCCCAGGGACTTCTTCTGTCCTGAGTTTGCGGTaGGTTGGGCTCAGACTCCAT | + |
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Preference number: 4 (lower is better) Translates to: LSNPPPYKVKGMAPGTSSVLSLR*VGLRLH Trigger: ATGGAGTCTGAGCCCAACTCACCGCAAACTCAGGAC...AGAAGAAGTCCCTGGGGCCATGCCTTTCACTTTGTAGGGTGGGGGATTACTGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR TCA 90 bp | TGCTTCTCTAAACACAGGTCTAGCCTGACTCTCAGTAATCCCCCACCCTACAAACCACAGCACCTGGCCTaGATGCAGCATGGGGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: CFSKHRSSLTLSNPPPYKPQHLA*MQHGGF Trigger: AAAACCCCCATGCTGCATTCAGGCCAGGTGCTGTGG...TTTGTAGGGTGGGGGATTACTGAGAGTCAGGCTAGACCTGTGTTTAGAGAAGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR CCA 90 bp | AATCCCCCACCCTACAAAGTGAAAGGCATGGCCCCAGGGACTTCTTCTTTGTTTGCAGCATGGGGGTTTTaGCTGGCAGCAGTGATTGTG | + |
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Preference number: 4 (lower is better) Translates to: NPPPYKVKGMAPGTSSLFAAWGF*LAAVIV Trigger: CACAATCACTGCTGCCAGCCAAAACCCCCATGCTGC...AAACAAAGAAGAAGTCCCTGGGGCCATGCCTTTCACTTTGTAGGGTGGGGGATT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR CCA 90 bp | CCACCCTACAAAGTGAAAGGCATGGCCCCAGGGACTTCTTCTTTGTTTGACTTCCCTGGACTCATTTTGTaGGCTATGGGGCTGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: PPYKVKGMAPGTSSLFDFPGLIL*AMGLLL Trigger: CAGCAGCAGCCCCATAGCCCACAAAATGAGTCCAGG...GAAGTCAAACAAAGAAGAAGTCCCTGGGGCCATGCCTTTCACTTTGTAGGGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR CCA 90 bp | GATTCTAGCCTCTTCATCCTCCCATTTCCAGATGGAGGCCTCCCTAGGGTAGGGCTGCTCTCATTTGCTTaGCCTGGACTCATTTTGTGG | + |
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Preference number: 4 (lower is better) Translates to: DSSLFILPFPDGGLPRVGLLSFA*PGLILW Trigger: CCACAAAATGAGTCCAGGCCAAGCAAATGAGAGCAG...CCCTACCCTAGGGAGGCCTCCATCTGGAAATGGGAGGATGAAGAGGCTAGAATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR TCA 90 bp | AACTGCTTCTCTAAACACAGGTCTAGCCTGACTCTCAGTAATCCCCCACCCTACCTCCATGTTAAGGGGTaGGACTTCAGGCTTGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: NCFSKHRSSLTLSNPPPYLHVKG*DFRLGL Trigger: GAGACCAAGCCTGAAGTCTCACCCCTTAACATGGAG...GTAGGGTGGGGGATTACTGAGAGTCAGGCTAGACCTGTGTTTAGAGAAGCAGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR CCA 90 bp | GATTCTAGCCTCTTCATCCTCCCATTTCCAGATGGAGGCCTCCCTAGGGTAGGGCTCATTTGCTTGGCCTaGACTCATTTTGTGGGCTAT | + |
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Preference number: 4 (lower is better) Translates to: DSSLFILPFPDGGLPRVGLICLA*THFVGY Trigger: ATAGCCCACAAAATGAGTCCAGGCCAAGCAAATGAG...CCCTACCCTAGGGAGGCCTCCATCTGGAAATGGGAGGATGAAGAGGCTAGAATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR CCA 90 bp | TTCTCTAAACACAGGTCTAGCCTGACTCTCAGTAATCCCCCACCCTACAAAGTGGTGAGACTTCAGGCTTaGTCTCCAAACCACAGCACC | + |
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Preference number: 4 (lower is better) Translates to: FSKHRSSLTLSNPPPYKVVRLQA*SPNHST Trigger: GGTGCTGTGGTTTGGAGACCAAGCCTGAAGTCTCAC...CACTTTGTAGGGTGGGGGATTACTGAGAGTCAGGCTAGACCTGTGTTTAGAGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR TCA 90 bp | TGCTTCTCTAAACACAGGTCTAGCCTGACTCTCAGTAATCCCCCACCCTACAAAAGCCTAGTGAGTCCATaGCTATCAGAAGCCAAAGCC | + |
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Preference number: 4 (lower is better) Translates to: CFSKHRSSLTLSNPPPYKSLVSP*LSEAKA Trigger: GGCTTTGGCTTCTGATAGTCATGGACTCACTAGGCT...TTTGTAGGGTGGGGGATTACTGAGAGTCAGGCTAGACCTGTGTTTAGAGAAGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR CCA 90 bp | TGCTTCTCTAAACACAGGTCTAGCCTGACTCTCAGTAATCCCCCACCCTACAAACATCTTCTGAACACTTaGAGGTACTGGTCTGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: CFSKHRSSLTLSNPPPYKHLLNT*RYWSGH Trigger: GTGGCCAGACCAGTACCTCCAAGTGTTCAGAAGATG...TTTGTAGGGTGGGGGATTACTGAGAGTCAGGCTAGACCTGTGTTTAGAGAAGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR TCA 90 bp | TGCTTCTCTAAACACAGGTCTAGCCTGACTCTCAGTAATCCCCCACCCTACAAATGGTCACACATCTTCTaGACACTTGGAGGTACTGGT | + |
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Preference number: 4 (lower is better) Translates to: CFSKHRSSLTLSNPPPYKWSHIF*TLGGTG Trigger: ACCAGTACCTCCAAGTGTTCAGAAGATGTGTGACCA...TTTGTAGGGTGGGGGATTACTGAGAGTCAGGCTAGACCTGTGTTTAGAGAAGCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR CCA 90 bp | ACTAGGAAAGATGATTCTAGCCTCTTCATCCTCCCATTTCCAGATGGAGGCCTCAACACTTGGAGGTACTaGTCTGGCCACACACACAAT | + |
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Preference number: 4 (lower is better) Translates to: TRKDDSSLFILPFPDGGLNTWRY*SGHTHN Trigger: ATTGTGTGTGTGGCCAGACCAGTACCTCCAAGTGTT...GAGGCCTCCATCTGGAAATGGGAGGATGAAGAGGCTAGAATCATCTTTCCTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR CCA 90 bp | TCTAGCCTGACTCTCAGTAATCCCCCACCCTACAAAGTGAAAGGCATGGCCCCATTGATTGCCTTTTGCTaGGCAGCATTTACTGTGTTT | + |
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Preference number: 4 (lower is better) Translates to: SSLTLSNPPPYKVKGMAPLIAFC*AAFTVF Trigger: AAACACAGTAAATGCTGCCCAGCAAAAGGCAATCAA...TGGGGCCATGCCTTTCACTTTGTAGGGTGGGGGATTACTGAGAGTCAGGCTAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR TCA 90 bp | AGGAAAGATGATTCTAGCCTCTTCATCCTCCCATTTCCAGATGGAGGCCTCCCTCACAATTTCCATGCTTaGCTTCTCATGACTGATTCC | + |
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Preference number: 4 (lower is better) Translates to: RKDDSSLFILPFPDGGLPHNFHA*LLMTDS Trigger: GGAATCAGTCATGAGAAGTCAAGCATGGAAATTGTG...AGGGAGGCCTCCATCTGGAAATGGGAGGATGAAGAGGCTAGAATCATCTTTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR GCA 90 bp | AACTGCTTCTCTAAACACAGGTCTAGCCTGACTCTCAGTAATCCCCCACCCTACTTGTTTGACTTCTTCTaGTCTCATTTGCTTGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: NCFSKHRSSLTLSNPPPYLFDFF*SHLLGL Trigger: CAGGCCAAGCAAATGAGAGCAGAAGAAGTCAAACAA...GTAGGGTGGGGGATTACTGAGAGTCAGGCTAGACCTGTGTTTAGAGAAGCAGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR CCA 90 bp | CACTGTGAAAACTGCTTCTCTAAACACAGGTCTAGCCTGACTCTCAGTAATCCCTTGGAGGTACTGGTCTaGCCACACACACAATTCACA | + |
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Preference number: 4 (lower is better) Translates to: HCENCFSKHRSSLTLSNPLEVLV*PHTQFT Trigger: TGTGAATTGTGTGTGTGGCCAGACCAGTACCTCCAA...GGGATTACTGAGAGTCAGGCTAGACCTGTGTTTAGAGAAGCAGTTTTCACAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR TCA 90 bp | CTAAATGTCAGGATCACTAGGAAAGATGATTCTAGCCTCTTCATCCTCCCATTTAACACAGGTCTAGCCTaGCTCTCAGTAATCCCCCAC | + |
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Preference number: 4 (lower is better) Translates to: LNVRITRKDDSSLFILPFNTGLA*LSVIPH Trigger: GTGGGGGATTACTGAGAGTCAGGCTAGACCTGTGTT...AAATGGGAGGATGAAGAGGCTAGAATCATCTTTCCTAGTGATCCTGACATTTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR GCA 90 bp | TATTGCTCTTTATTTCTGTGCTGTCTAAATGTCAGGATCACTAGGAAAGATGATAGCACCTGGCCTGAATaGAGCATGGGGGTTTTGGCT | + |
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Preference number: 4 (lower is better) Translates to: YCSLFLCCLNVRITRKDDSTWPE*SMGVLA Trigger: AGCCAAAACCCCCATGCTGCATTCAGGCCAGGTGCT...ATCATCTTTCCTAGTGATCCTGACATTTAGACAGCACAGAAATAAAGAGCAATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR GCA 90 bp | GCCTCTCATTGGGTGGAAATGGTAGTCACTGTGAAAACTGCTTCTCTAAACACATCTTCTGCTCTCATTTaGTTGGCCTGGACTCATTTT | + |
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Preference number: 4 (lower is better) Translates to: ASHWVEMVVTVKTASLNTSSALI*LAWTHF Trigger: AAAATGAGTCCAGGCCAAGCAAATGAGAGCAGAAGA...TGTGTTTAGAGAAGCAGTTTTCACAGTGACTACCATTTCCACCCAATGAGAGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR GCA 90 bp | TTGGGTGGAAATGGTAGTCACTGTGAAAACTGCTTCTCTAAACACAGGTCTAGCTGCTCTTTATTTCTGTaGTGTCTAAATGTCAGGATC | + |
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Preference number: 4 (lower is better) Translates to: LGGNGSHCENCFSKHRSSCSLFL*CLNVRI Trigger: GATCCTGACATTTAGACAGCACAGAAATAAAGAGCA...GCTAGACCTGTGTTTAGAGAAGCAGTTTTCACAGTGACTACCATTTCCACCCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR CCA 90 bp | TATTGCTCTTTATTTCTGTGCTGTCTAAATGTCAGGATCACTAGGAAAGATGATATAGGAGCCTCTCATTaGGTGGAAATGGTAGTCACT | + |
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Preference number: 4 (lower is better) Translates to: YCSLFLCCLNVRITRKDDIGASH*VEMVVT Trigger: AGTGACTACCATTTCCACCCAATGAGAGGCTCCTAT...ATCATCTTTCCTAGTGATCCTGACATTTAGACAGCACAGAAATAAAGAGCAATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR TCA 90 bp | TATTGCTCTTTATTTCTGTGCTGTCTAAATGTCAGGATCACTAGGAAAGATGATATGCTTGACTTCTCATaGCTGATTCCAGTAGGTATT | + |
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Preference number: 4 (lower is better) Translates to: YCSLFLCCLNVRITRKDDMLDFS*LIPVGI Trigger: AATACCTACTGGAATCAGTCATGAGAAGTCAAGCAT...ATCATCTTTCCTAGTGATCCTGACATTTAGACAGCACAGAAATAAAGAGCAATA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR CAA 90 bp | AGGAAAGATGATTCTAGCCTCTTCATCCTCCCATTTCCAGATGGAGGCCTCCCTGGGCTGCTGCTGGGTTaGACAGCCCTTGTCCTGAGT | + |
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Preference number: 5 (lower is better) Translates to: RKDDSSLFILPFPDGGLPGLLLG*TALVLS Trigger: ACTCAGGACAAGGGCTGTCAAACCCAGCAGCAGCCC...AGGGAGGCCTCCATCTGGAAATGGGAGGATGAAGAGGCTAGAATCATCTTTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR CAA 90 bp | CCACCCTACAAAGTGAAAGGCATGGCCCCAGGGACTTCTTCTTTGTTTGACTTCTGCAGCATGGGGGTTTaGGCTGGCAGCAGTGATTGT | + |
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Preference number: 5 (lower is better) Translates to: PPYKVKGMAPGTSSLFDFCSMGV*AGSSDC Trigger: ACAATCACTGCTGCCAGCCAAAACCCCCATGCTGCA...GAAGTCAAACAAAGAAGAAGTCCCTGGGGCCATGCCTTTCACTTTGTAGGGTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR CAA 90 bp | AACTGCTTCTCTAAACACAGGTCTAGCCTGACTCTCAGTAATCCCCCACCCTACGGTGAGACTTCAGGCTaGGTCTCCAAACCACAGCAC | + |
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Preference number: 5 (lower is better) Translates to: NCFSKHRSSLTLSNPPPYGETSG*VSKPQH Trigger: GTGCTGTGGTTTGGAGACCAAGCCTGAAGTCTCACC...GTAGGGTGGGGGATTACTGAGAGTCAGGCTAGACCTGTGTTTAGAGAAGCAGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS CCA 90 bp | GGACTTCTTCTTTGTTTGACTTCTTCTGCTCTCATTTGCTTGGCCTaGACTCATTTTGTGGGCTATGGGGCTGCTGCTGGGTTTGACAGC | + |
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Preference number: 5 (lower is better) Translates to: GLLLCLTSSALICLA*THFVGYGAAAGFDS Trigger: GCTGTCAAACCCAGCAGCAGCCCCATAGCCCACAAAATGAGTCCAGGCCAAGCAAATGAGAGCAGAAGAAGTCAAACAAAGAAGAAGTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR CAA 90 bp | AATGGTAGTCACTGTGAAAACTGCTTCTCTAAACACAGGTCTAGCCTGACTCTCTGGCCTGGACTCATTTaGTGGGCTATGGGGCTGCTG | + |
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Preference number: 5 (lower is better) Translates to: NGSHCENCFSKHRSSLTLWPGLI*WAMGLL Trigger: CAGCAGCCCCATAGCCCACAAAATGAGTCCAGGCCA...GAGAGTCAGGCTAGACCTGTGTTTAGAGAAGCAGTTTTCACAGTGACTACCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS TCA 90 bp | ACCCTACAAAGTGAAAGGCATGGCCCCAGGGACTTCTTCTTTGTTTaGCTTCTTCTGCTCTCATTTGCTTGGCCTGGACTCATTTTGTGG | + |
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Preference number: 5 (lower is better) Translates to: TLQSERHGPRDFFFV*LLLLSFAWPGLILW Trigger: CCACAAAATGAGTCCAGGCCAAGCAAATGAGAGCAGAAGAAGTCAAACAAAGAAGAAGTCCCTGGGGCCATGCCTTTCACTTTGTAGGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR CAA 90 bp | AATCCCCCACCCTACAAAGTGAAAGGCATGGCCCCAGGGACTTCTTCTTTGTTTTTCTTCTGCTCTCATTaGCTTGGCCTGGACTCATTT | + |
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Preference number: 5 (lower is better) Translates to: NPPPYKVKGMAPGTSSLFFFCSH*LGLDSF Trigger: AAATGAGTCCAGGCCAAGCAAATGAGAGCAGAAGAA...AAACAAAGAAGAAGTCCCTGGGGCCATGCCTTTCACTTTGTAGGGTGGGGGATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR CAA 90 bp | AATCCCCCACCCTACAAAGTGAAAGGCATGGCCCCAGGGACTTCTTCTTTGTTTCCAGGGACTTCTTCTTaGTTTGACTTCTTCTGCTCT | + |
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Preference number: 5 (lower is better) Translates to: NPPPYKVKGMAPGTSSLFPGTSS*FDFFCS Trigger: AGAGCAGAAGAAGTCAAACAAAGAAGAAGTCCCTGG...AAACAAAGAAGAAGTCCCTGGGGCCATGCCTTTCACTTTGTAGGGTGGGGGATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR CAA 90 bp | ACTAGGAAAGATGATTCTAGCCTCTTCATCCTCCCATTTCCAGATGGAGGCCTCAATAGGAGCCTCTCATaGGGTGGAAATGGTAGTCAC | + |
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Preference number: 5 (lower is better) Translates to: TRKDDSSLFILPFPDGGLNRSLS*GGNGSH Trigger: GTGACTACCATTTCCACCCAATGAGAGGCTCCTATT...GAGGCCTCCATCTGGAAATGGGAGGATGAAGAGGCTAGAATCATCTTTCCTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR CAA 90 bp | GCCTCTCATTGGGTGGAAATGGTAGTCACTGTGAAAACTGCTTCTCTAAACACAACATCTTCTGAACACTaGGAGGTACTGGTCTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: ASHWVEMVVTVKTASLNTTSSEH*EVLVWP Trigger: TGGCCAGACCAGTACCTCCAAGTGTTCAGAAGATGT...TGTGTTTAGAGAAGCAGTTTTCACAGTGACTACCATTTCCACCCAATGAGAGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR CAA 90 bp | CACTGTGAAAACTGCTTCTCTAAACACAGGTCTAGCCTGACTCTCAGTAATCCCTCTGCTCTCATTTGCTaGGCCTGGACTCATTTTGTG | + |
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Preference number: 5 (lower is better) Translates to: HCENCFSKHRSSLTLSNPSALIC*AWTHFV Trigger: CACAAAATGAGTCCAGGCCAAGCAAATGAGAGCAGA...GGGATTACTGAGAGTCAGGCTAGACCTGTGTTTAGAGAAGCAGTTTTCACAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS-3UTR CAA 90 bp | AATGGTAGTCACTGTGAAAACTGCTTCTCTAAACACAGGTCTAGCCTGACTCTCGGACTTCTTCTTTGTTaGACTTCTTCTGCTCTCATT | + |
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Preference number: 5 (lower is better) Translates to: NGSHCENCFSKHRSSLTLGLLLC*TSSALI Trigger: AATGAGAGCAGAAGAAGTCAAACAAAGAAGAAGTCC...GAGAGTCAGGCTAGACCTGTGTTTAGAGAAGCAGTTTTCACAGTGACTACCATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS CCA 72 bp | GTGAGACTTCAGGCTTGGTCTCCAAACCACAGCACCTaGCCTGAATGCAGCATGGGGGTTTTGGCTGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: VRLQAWSPNHST*PECSMGVLAGS Trigger: GCTGCCAGCCAAAACCCCCATGCTGCATTCAGGCCAGGTGCTGTGGTTTGGAGACCAAGCCTGAAGTCTCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS GCA 72 bp | CAGGCTTGGTCTCCAAACCACAGCACCTGGCCTGAATaGAGCATGGGGGTTTTGGCTGGCAGCAGTGATTGT | + |
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Preference number: 6 (lower is better) Translates to: QAWSPNHSTWPE*SMGVLAGSSDC Trigger: ACAATCACTGCTGCCAGCCAAAACCCCCATGCTGCATTCAGGCCAGGTGCTGTGGTTTGGAGACCAAGCCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS CCA 72 bp | CTTCTGCTCTCATTTGCTTGGCCTGGACTCATTTTGTaGGCTATGGGGCTGCTGCTGGGTTTGACAGCCCTT | + |
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Preference number: 6 (lower is better) Translates to: LLLSFAWPGLIL*AMGLLLGLTAL Trigger: AAGGGCTGTCAAACCCAGCAGCAGCCCCATAGCCCACAAAATGAGTCCAGGCCAAGCAAATGAGAGCAGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS CAA 72 bp | CTTCTTCTGCTCTCATTTGCTTGGCCTGGACTCATTTaGTGGGCTATGGGGCTGCTGCTGGGTTTGACAGCC | + |
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Preference number: 6 (lower is better) Translates to: LLLLSFAWPGLI*WAMGLLLGLTA Trigger: GGCTGTCAAACCCAGCAGCAGCCCCATAGCCCACAAAATGAGTCCAGGCCAAGCAAATGAGAGCAGAAGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS CCA 72 bp | CTTTGTTTGACTTCTTCTGCTCTCATTTGCTTGGCCTaGACTCATTTTGTGGGCTATGGGGCTGCTGCTGGG | + |
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Preference number: 6 (lower is better) Translates to: LCLTSSALICLA*THFVGYGAAAG Trigger: CCCAGCAGCAGCCCCATAGCCCACAAAATGAGTCCAGGCCAAGCAAATGAGAGCAGAAGAAGTCAAACAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS CAA 90 bp | CCCCCACCCTACAAAGTGAAAGGCATGGCCCCAGGGACTTCTTCTTaGTTTGACTTCTTCTGCTCTCATTTGCTTGGCCTGGACTCATTT | + |
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Preference number: 6 (lower is better) Translates to: PPPYKVKGMAPGTSS*FDFFCSHLLGLDSF Trigger: AAATGAGTCCAGGCCAAGCAAATGAGAGCAGAAGAAGTCAAACAAAGAAGAAGTCCCTGGGGCCATGCCTTTCACTTTGTAGGGTGGGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS GCA 72 bp | ATGGCCCCAGGGACTTCTTCTTTGTTTGACTTCTTCTaGTCTCATTTGCTTGGCCTGGACTCATTTTGTGGG | + |
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Preference number: 6 (lower is better) Translates to: MAPGTSSLFDFF*SHLLGLDSFCG Trigger: CCCACAAAATGAGTCCAGGCCAAGCAAATGAGAGCAGAAGAAGTCAAACAAAGAAGAAGTCCCTGGGGCCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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| CDS TCA 72 bp | CACACACAATTCACAATTTCCATGCTTGACTTCTCATaGCTGATTCCAGTAGGTATTATTGATCTTCCTCAG | + |
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Preference number: 6 (lower is better) Translates to: HTQFTISMLDFS*LIPVGIIDLPQ Trigger: CTGAGGAAGATCAATAATACCTACTGGAATCAGTCATGAGAAGTCAAGCATGGAAATTGTGAATTGTGTGTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368765.4 |
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