Pregenerated sensors for SMCO4 (Homo sapiens)

Ensembl gene IDs: ENSG00000166002

Ensembl transcript IDs: ENST00000298966.7, ENST00000525141.1, ENST00000526869.1, ENST00000527149.5

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 72 bp	CACACACACACACACACACACACACACACACACACATaGGCGCGCGCTTTGAAGTCTGAAAGGCACATGAAG	+
Preference number: 3 (lower is better) Translates to: HTHTHTHTHTHT*ARALKSERHMK Trigger: CTTCATGTGCCTTTCAGACTTCAAAGCGCGCGCGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000298966.7 ENST00000525141.1
CDS CCA 90 bp	GGCGCCGCCGCCGCCGCCGCCACCACTGCCGGGAATACGTGGCAGTaGCCGCCGCCGCTTGCGCTCCCCGCCTCGCCTCTCCTCTCGGCG	+
Preference number: 5 (lower is better) Translates to: GAAAAAATTAGNTWQ*PPPLALPASPLLSA Trigger: CGCCGAGAGGAGAGGCGAGGCGGGGAGCGCAAGCGGCGGCGGCCACTGCCACGTATTCCCGGCAGTGGTGGCGGCGGCGGCGGCGGCGCC 80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000298966.7
CDS CCA 72 bp	GCCGCCGCCGCCACCACTGCCGGGAATACGTGGCAGTaGCCGCCGCCGCTTGCGCTCCCCGCCTCGCCTCTC	+
Preference number: 6 (lower is better) Translates to: AAAATTAGNTWQ*PPPLALPASPL Trigger: GAGAGGCGAGGCGGGGAGCGCAAGCGGCGGCGGCCACTGCCACGTATTCCCGGCAGTGGTGGCGGCGGCGGC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000298966.7
CDS GCA 72 bp	AAACTGATTTCCAGTACAGGTGACTTGAGTTATTCCTaGCCGCGGGCGCCGCCGCCGCCGCCGCCACCACTG	+
Preference number: 6 (lower is better) Translates to: KLISSTGDLSYS*PRAPPPPPPPL Trigger: CAGTGGTGGCGGCGGCGGCGGCGGCGCCCGCGGGCAGGAATAACTCAAGTCACCTGTACTGGAAATCAGTTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000298966.7 ENST00000526869.1
CDS CAA 72 bp	ACAGGTGACTTGAGTTATTCCGGCAGAGACAGCTTGTaGCTGGAGATGCTGGGAGCAGGCAGGTCCAACAGA	+
Preference number: 6 (lower is better) Translates to: TGDLSYSGRDSL*LEMLGAGRSNR Trigger: TCTGTTGGACCTGCCTGCTCCCAGCATCTCCAGCAACAAGCTGTCTCTGCCGGAATAACTCAAGTCACCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000527149.5
CDS CAA 72 bp	AGTACAGGTGACTTGAGTTATTCCGGCAGAGACAGCTaGTTGCTGGAGATGCTGGGAGCAGGCAGGTCCAAC	+
Preference number: 6 (lower is better) Translates to: STGDLSYSGRDS*LLEMLGAGRSN Trigger: GTTGGACCTGCCTGCTCCCAGCATCTCCAGCAACAAGCTGTCTCTGCCGGAATAACTCAAGTCACCTGTACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000527149.5

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu