Pregenerated sensors for SMCO2 (Homo sapiens)
Ensembl gene IDs: ENSG00000165935Ensembl transcript IDs: ENST00000298876.8, ENST00000416383.5, ENST00000535986.1, ENST00000538647.1, ENST00000541168.1, ENST00000543991.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCAAATTCAAGAAAGGCTCTCTCATCTCCCGTAGGTCCCATGTGGTaGGGCACCCAAGCATTCTCAGAAGCACCCTTTCAAAGAGAAATG | + |
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Preference number: 5 (lower is better) Translates to: PNSRKALSSPVGPMW*GTQAFSEAPFQREM Trigger: CATTTCTCTTTGAAAGGGTGCTTCTGAGAATGCTTGGGTGCCGCACCACATGGGACCTACGGGAGATGAGAGAGCCTTTCTTGAATTTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000298876.8 ENST00000416383.5 ENST00000535986.1 ENST00000541168.1 |
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| CDS CCA 90 bp | CTTCCAAATTCAAGAAAGGCTCTCTCATCTCCCGTAGGTCCCATGTaGTGCGGCACCCAAGCATTCTCAGAAGCACCCTTTCAAAGAGAA | + |
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Preference number: 5 (lower is better) Translates to: LPNSRKALSSPVGPM*CGTQAFSEAPFQRE Trigger: TTCTCTTTGAAAGGGTGCTTCTGAGAATGCTTGGGTGCCGCACCACATGGGACCTACGGGAGATGAGAGAGCCTTTCTTGAATTTGGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000298876.8 ENST00000416383.5 ENST00000535986.1 ENST00000541168.1 |
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| CDS TCA 90 bp | AGTTCAAGGAGGTTCTTCTTTGAAAACTGCAGAGATGTAGACGCTTaGGGGTCCTCATCAACATCTGTTTCTTGCTTATCCTGTTTACTC | + |
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Preference number: 5 (lower is better) Translates to: SSRRFFFENCRDVDA*GSSSTSVSCLSCLL Trigger: GAGTAAACAGGATAAGCAAGAAACAGATGTTGATGAGGACCCTCAAGCGTCTACATCTCTGCAGTTTTCAAAGAAGAACCTCCTTGAACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000298876.8 ENST00000416383.5 ENST00000535986.1 |
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| CDS GCA 90 bp | TTGTTTTTCTTAGTCAGCTGTTGTTCCTGGCAGTCCATCTTCATCTaGAGAGACATTTTGTTATTTAGGTTTGTGGGCGTGAGAGCCATT | + |
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Preference number: 5 (lower is better) Translates to: LFFLVSCCSWQSIFI*RDILLFRFVGVRAI Trigger: AATGGCTCTCACGCCCACAAACCTAAATAACAAAATGTCTCTGCAGATGAAGATGGACTGCCAGGAACAACAGCTGACTAAGAAAAACAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000298876.8 ENST00000416383.5 ENST00000543991.1 |
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| CDS TCA 90 bp | TGGGAACAATGCCATATTCCCTGCCTCCCTCCTGATTTCAAGCTTTaGAGTTCTGCACCAATTAGAAGAAAACCCTCAGATATTTTCTTA | + |
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Preference number: 5 (lower is better) Translates to: WEQCHIPCLPPDFKL*SSAPIRRKPSDIFL Trigger: TAAGAAAATATCTGAGGGTTTTCTTCTAATTGGTGCAGAACTTCAAAGCTTGAAATCAGGAGGGAGGCAGGGAATATGGCATTGTTCCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000543991.1 |
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| CDS TCA 90 bp | AAGAAAACCCTCAGATATTTTCTTACCACTTTAAGATATGCGGCGTaGAGTTCTTCTCTTCAACCTACTGTGTCATTTAAGTGTCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: KKTLRYFLTTLRYAA*SSSLQPTVSFKCLS Trigger: AGAGAGACACTTAAATGACACAGTAGGTTGAAGAGAAGAACTTCACGCCGCATATCTTAAAGTGGTAAGAAAATATCTGAGGGTTTTCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000543991.1 |
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| CDS CCA 72 bp | TCAAGAAAGGCTCTCTCATCTCCCGTAGGTCCCATGTaGTGCGGCACCCAAGCATTCTCAGAAGCACCCTTT | + |
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Preference number: 6 (lower is better) Translates to: SRKALSSPVGPM*CGTQAFSEAPF Trigger: AAAGGGTGCTTCTGAGAATGCTTGGGTGCCGCACCACATGGGACCTACGGGAGATGAGAGAGCCTTTCTTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000298876.8 ENST00000416383.5 ENST00000535986.1 ENST00000541168.1 |
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| CDS TCA 72 bp | ACTTCATTACAAGTATTCACCTCAGTGCTTGTCCCTTaGTCAAGGTCAAGGCCCCGGTCCTCCAGCTTTTCA | + |
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Preference number: 6 (lower is better) Translates to: TSLQVFTSVLVP*SRSRPRSSSFS Trigger: TGAAAAGCTGGAGGACCGGGGCCTTGACCTTGATCAAGGGACAAGCACTGAGGTGAATACTTGTAATGAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000298876.8 ENST00000416383.5 ENST00000535986.1 |
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| CDS CAA 90 bp | GTCAGCTGTTGTTCCTGGCAGTCCATCTTCATCTGCAGAGACATTTaGTTATTTAGGTTTGTGGGCGTGAGAGCCATTTCTTCGGCACTG | + |
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Preference number: 6 (lower is better) Translates to: VSCCSWQSIFICRDI*LFRFVGVRAISSAL Trigger: CAGTGCCGAAGAAATGGCTCTCACGCCCACAAACCTAAATAACAAAATGTCTCTGCAGATGAAGATGGACTGCCAGGAACAACAGCTGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000298876.8 ENST00000416383.5 |
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| CDS CAA 90 bp | TGTGAGAGTCAGTGTCCTCTGCCTCCATTTGATACATCCTTAGCTTaGCACTCAGCAGTTCCACATTCTTGCAAAGGTCCTCCAGCCTTT | + |
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Preference number: 6 (lower is better) Translates to: CESQCPLPPFDTSLA*HSAVPHSCKGPPAF Trigger: AAAGGCTGGAGGACCTTTGCAAGAATGTGGAACTGCTGAGTGCAAAGCTAAGGATGTATCAAATGGAGGCAGAGGACACTGACTCTCACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000298876.8 ENST00000416383.5 ENST00000535986.1 ENST00000541168.1 |
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| CDS CAA 90 bp | TGTGAGAGTCAGTGTCCTCTGCCTCCATTTGATACATCCTTAGCTTaGCACTCAGCAGTTCCACATTCTTGCAAAGGTCCTCTTCACTGT | + |
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Preference number: 6 (lower is better) Translates to: CESQCPLPPFDTSLA*HSAVPHSCKGPLHC Trigger: ACAGTGAAGAGGACCTTTGCAAGAATGTGGAACTGCTGAGTGCAAAGCTAAGGATGTATCAAATGGAGGCAGAGGACACTGACTCTCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000538647.1 |
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| CDS CAA 72 bp | CAGTGTCCTCTGCCTCCATTTGATACATCCTTAGCTTaGCACTCAGCAGTTCCACATTCTTGCAAAGGTCCT | + |
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Preference number: 6 (lower is better) Translates to: QCPLPPFDTSLA*HSAVPHSCKGP Trigger: AGGACCTTTGCAAGAATGTGGAACTGCTGAGTGCAAAGCTAAGGATGTATCAAATGGAGGCAGAGGACACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000298876.8 ENST00000416383.5 ENST00000535986.1 ENST00000538647.1 ENST00000541168.1 |
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| CDS CAA 90 bp | CTCTCTTACCCATTTTTCAGTGTCTACCTTGTGAAGGAAGTCAGTTaGAGGGTTTTCGGAGGAAATGTCATCCTCATCATCCGATCTGTC | + |
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Preference number: 6 (lower is better) Translates to: LSYPFFSVYLVKEVS*RVFGGNVILIIRSV Trigger: GACAGATCGGATGATGAGGATGACATTTCCTCCGAAAACCCTCAAACTGACTTCCTTCACAAGGTAGACACTGAAAAATGGGTAAGAGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543991.1 |
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| CDS TCA 72 bp | TGCCATATTCCCTGCCTCCCTCCTGATTTCAAGCTTTaGAGTTCTGCACCAATTAGAAGAAAACCCTCAGAT | + |
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Preference number: 6 (lower is better) Translates to: CHIPCLPPDFKL*SSAPIRRKPSD Trigger: ATCTGAGGGTTTTCTTCTAATTGGTGCAGAACTTCAAAGCTTGAAATCAGGAGGGAGGCAGGGAATATGGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543991.1 |
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| CDS GCA 72 bp | TTAGTCAGCTGTTGTTCCTGGCAGTCCATCTTCATCTaGAGAGACATTTTGTTATTTAGGTTTGTGGGCGTG | + |
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Preference number: 6 (lower is better) Translates to: LVSCCSWQSIFI*RDILLFRFVGV Trigger: CACGCCCACAAACCTAAATAACAAAATGTCTCTGCAGATGAAGATGGACTGCCAGGAACAACAGCTGACTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000298876.8 ENST00000416383.5 ENST00000535986.1 ENST00000543991.1 |
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| CDS TCA 72 bp | AGGTTCTTCTTTGAAAACTGCAGAGATGTAGACGCTTaGGGGTCCTCATCAACATCTGTTTCTTGCTTATCC | + |
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Preference number: 6 (lower is better) Translates to: RFFFENCRDVDA*GSSSTSVSCLS Trigger: GGATAAGCAAGAAACAGATGTTGATGAGGACCCTCAAGCGTCTACATCTCTGCAGTTTTCAAAGAAGAACCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000298876.8 ENST00000416383.5 ENST00000535986.1 |
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| CDS GCA 72 bp | GAAAACCCTCAGATATTTTCTTACCACTTTAAGATATaGGGCGTGAAGTTCTTCTCTTCAACCTACTGTGTC | + |
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Preference number: 6 (lower is better) Translates to: ENPQIFSYHFKI*GVKFFSSTYCV Trigger: GACACAGTAGGTTGAAGAGAAGAACTTCACGCCGCATATCTTAAAGTGGTAAGAAAATATCTGAGGGTTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000543991.1 |
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| CDS TCA 72 bp | CTCAGATATTTTCTTACCACTTTAAGATATGCGGCGTaGAGTTCTTCTCTTCAACCTACTGTGTCATTTAAG | + |
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Preference number: 6 (lower is better) Translates to: LRYFLTTLRYAA*SSSLQPTVSFK Trigger: CTTAAATGACACAGTAGGTTGAAGAGAAGAACTTCACGCCGCATATCTTAAAGTGGTAAGAAAATATCTGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543991.1 |
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