RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SMAD6 (Homo sapiens)

Ensembl gene IDs: ENSG00000137834

Ensembl transcript IDs: ENST00000288840.10, ENST00000557916.5, ENST00000558937.1, ENST00000559931.5, ENST00000612349.1

Found 322 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGTGCTCGCCGCGGTTGTAGGCCCACACGCCGTCGGGCTCCTTGCTaGGCAGGATGCCGAAGCCGATCTTGCTGCGCGTTCGCCGCACCG +
Preference number: 1 (lower is better)
Translates to: GARRGCRPTRRRAPC*AGCRSRSCCAFAAP
Trigger: CGGTGCGGCGAACGCGCAGCAAGATCGGCTTCGGCATCCTGCTCAGCAAGGAGCCCGACGGCGTGTGGGCCTACAACCGCGGCGAGCACC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR GCA 90 bp CATAGAGGCGGCCCACGCGCGTCCGGTGCTCCCAGTACGCCACGCTaGACCAGTGGCTCGGCTTGGTGGCGTCCGGAGACATGCTGGCGT +
Preference number: 1 (lower is better)
Translates to: HRGGPRASGAPSTPR*TSGSAWWRPETCWR
Trigger: ACGCCAGCATGTCTCCGGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCGCGTGGGCCGCCTCTATG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR CCA 90 bp CGGCCCACGCGCGTCCGGTGCTCCCAGTACGCCACGCTGCACCAGTaGCTCGGCTTGGTGGCGTCCGGAGACATGCTGGCGTCTCTCATT +
Preference number: 1 (lower is better)
Translates to: RPTRVRCSQYATLHQ*LGLVASGDMLASLI
Trigger: AATGAGAGACGCCAGCATGTCTCCGGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCGCGTGGGCCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR GCA 90 bp GTCAGTCCCAGCCAGCATGCCACCAGGCCACCATGCCACCAGCCATaGTCCCAAAGGGCCCCACAGACCTTGGTCCTGGCCCTCGATGTC +
Preference number: 1 (lower is better)
Translates to: VSPSQHATRPPCHQP*SQRAPQTLVLALDV
Trigger: GACATCGAGGGCCAGGACCAAGGTCTGTGGGGCCCTTTGGGAGCATGGCTGGTGGCATGGTGGCCTGGTGGCATGCTGGCTGGGACTGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000558937.1
3UTR CCA 90 bp GCGTCCGGTGCTCCCAGTACGCCACGCTGCACCAGTGGCTCGGCTTaGTGGCGTCCGGAGACATGCTGGCGTCTCTCATTTCTCAAGGAA +
Preference number: 1 (lower is better)
Translates to: ASGAPSTPRCTSGSA*WRPETCWRLSFLKE
Trigger: TTCCTTGAGAAATGAGAGACGCCAGCATGTCTCCGGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGCACCGGACGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR CCA 90 bp GGCCACCATGCCACCAGCCATGCTCCCAAAGGGCCCCACAGACCTTaGTCCTGGCCCTCGATGTCCCCAGTCCAACACCAACCTCTCATT +
Preference number: 1 (lower is better)
Translates to: GHHATSHAPKGPHRP*SWPSMSPVQHQPLI
Trigger: AATGAGAGGTTGGTGTTGGACTGGGGACATCGAGGGCCAGGACCAAGGTCTGTGGGGCCCTTTGGGAGCATGGCTGGTGGCATGGTGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000558937.1
3UTR CCA 90 bp CATGCCACCAGCCATGCTCCCAAAGGGCCCCACAGACCTTGGTCCTaGCCCTCGATGTCCCCAGTCCAACACCAACCTCTCATTTCTCAA +
Preference number: 1 (lower is better)
Translates to: HATSHAPKGPHRPWS*PSMSPVQHQPLISQ
Trigger: TTGAGAAATGAGAGGTTGGTGTTGGACTGGGGACATCGAGGGCCAGGACCAAGGTCTGTGGGGCCCTTTGGGAGCATGGCTGGTGGCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000558937.1
3UTR GCA 90 bp CCTGTGGAGGTCCTAAAAAGATCTACGGGGCTCGAGATGGTTCTCTaGAAGGTAGCAGGTGGGCTCAAGGCCCATTTCAGTCTTTGTTCC +
Preference number: 1 (lower is better)
Translates to: PVEVLKRSTGLEMVL*KVAGGLKAHFSLCS
Trigger: GGAACAAAGACTGAAATGGGCCTTGAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAGCCCCGTAGATCTTTTTAGGACCTCCACAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
3UTR TCA 90 bp GATGTCCCCAGTCCAACACCAACCTCTCATTTCTCAAGGAAAGTTTaGTTCAGGTATTCCTCCGGATGTAGGGGTCCCTATGACCAGCTT +
Preference number: 1 (lower is better)
Translates to: DVPSPTPTSHFSRKV*FRYSSGCRGPYDQL
Trigger: AAGCTGGTCATAGGGACCCCTACATCCGGAGGAATACCTGAATCAAACTTTCCTTGAGAAATGAGAGGTTGGTGTTGGACTGGGGACATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000558937.1
3UTR-3UTR TCA 90 bp GCGGCCGCCGGGCGCGTCCAGCGTCGGGGAGTTGACGAAGATGGGGTGCTCGCCTGCGCTGCTCCAGGTTaGGCTGGCCCAGGCAGAAGC +
Preference number: 2 (lower is better)
Translates to: AAAGRVQRRGVDEDGVLACAAPG*AGPGRS
Trigger: GCTTCTGCCTGGGCCAGCTCAACCTGGAGCAGCGCA...GGCGAGCACCCCATCTTCGTCAACTCCCCGACGCTGGACGCGCCCGGCGGCCGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR-3UTR GCA 90 bp GCGGCCGCCGGGCGCGTCCAGCGTCGGGGAGTTGACGAAGATGGGGTGCTCGCCCGAAGCCGATCTTGCTaGGCGTTCGCCGCACCGACT +
Preference number: 2 (lower is better)
Translates to: AAAGRVQRRGVDEDGVLARSRSC*AFAAPT
Trigger: AGTCGGTGCGGCGAACGCGCAGCAAGATCGGCTTCG...GGCGAGCACCCCATCTTCGTCAACTCCCCGACGCTGGACGCGCCCGGCGGCCGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR-3UTR GCA 90 bp GCCGCGGTTGTAGGCCCACACGCCGTCGGGCTCCTTGCTGAGCAGGATGCCGAACCCACGCGCGTCCGGTaGTCCCAGTACGCCACGCTG +
Preference number: 2 (lower is better)
Translates to: AAVVGPHAVGLLAEQDAEPTRVR*SQYATL
Trigger: CAGCGTGGCGTACTGGGAGCACCGGACGCGCGTGGG...TTCGGCATCCTGCTCAGCAAGGAGCCCGACGGCGTGTGGGCCTACAACCGCGGC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR CAA 90 bp CACACGCCGTCGGGCTCCTTGCTGAGCAGGATGCCGAAGCCGATCTaGCTGCGCGTTCGCCGCACCGACTCGCTGCGCTGCTCCAGGTTG +
Preference number: 2 (lower is better)
Translates to: HTPSGSLLSRMPKPI*LRVRRTDSLRCSRL
Trigger: CAACCTGGAGCAGCGCAGCGAGTCGGTGCGGCGAACGCGCAGCAAGATCGGCTTCGGCATCCTGCTCAGCAAGGAGCCCGACGGCGTGTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR-3UTR GCA 90 bp GCGGTTGTAGGCCCACACGCCGTCGGGCTCCTTGCTGAGCAGGATGCCGAAGCCCCCAGTACGCCACGCTaGACCAGTGGCTCGGCTTGG +
Preference number: 2 (lower is better)
Translates to: AVVGPHAVGLLAEQDAEAPSTPR*TSGSAW
Trigger: CCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGG...GGCTTCGGCATCCTGCTCAGCAAGGAGCCCGACGGCGTGTGGGCCTACAACCGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR-3UTR GCA 90 bp CCACACGCCGTCGGGCTCCTTGCTGAGCAGGATGCCGAAGCCGATCTTGCTGCGACCGACTCGCTGCGCTaGTCCAGGTTGAGCTGGCCC +
Preference number: 2 (lower is better)
Translates to: PHAVGLLAEQDAEADLAATDSLR*SRLSWP
Trigger: GGGCCAGCTCAACCTGGAGCAGCGCAGCGAGTCGGT...CGCAGCAAGATCGGCTTCGGCATCCTGCTCAGCAAGGAGCCCGACGGCGTGTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR-3UTR GCA 90 bp CGGCCTGGTCGTACACCGCATAGAGGCGGCCCACGCGCGTCCGGTGCTCCCAGTTGGCGTCCGGAGACATaGTGGCGTCTCTCATTTCTC +
Preference number: 2 (lower is better)
Translates to: RPGRTPHRGGPRASGAPSWRPET*WRLSFL
Trigger: GAGAAATGAGAGACGCCAGCATGTCTCCGGACGCCA...ACTGGGAGCACCGGACGCGCGTGGGCCGCCTCTATGCGGTGTACGACCAGGCCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR-3UTR GCA 90 bp GTAGGCCCACACGCCGTCGGGCTCCTTGCTGAGCAGGATGCCGAAGCCGATCTTCCCAGTACGCCACGCTaGACCAGTGGCTCGGCTTGG +
Preference number: 2 (lower is better)
Translates to: VGPHAVGLLAEQDAEADLPSTPR*TSGSAW
Trigger: CCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGG...AAGATCGGCTTCGGCATCCTGCTCAGCAAGGAGCCCGACGGCGTGTGGGCCTAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR-3UTR CCA 90 bp GCTGAGCAGGATGCCGAAGCCGATCTTGCTGCGCGTTCGCCGCACCGACTCGCTACCAGTGGCTCGGCTTaGTGGCGTCCGGAGACATGC +
Preference number: 2 (lower is better)
Translates to: AEQDAEADLAARSPHRLATSGSA*WRPETC
Trigger: GCATGTCTCCGGACGCCACCAAGCCGAGCCACTGGT...AGCGAGTCGGTGCGGCGAACGCGCAGCAAGATCGGCTTCGGCATCCTGCTCAGC
66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR-3UTR CCA 90 bp GGCTCCTTGCTGAGCAGGATGCCGAAGCCGATCTTGCTGCGCGTTCGCCGCACCTGCTCCAGGTTGAGCTaGCCCAGGCAGAAGCCGCTG +
Preference number: 2 (lower is better)
Translates to: GSLLSRMPKPILLRVRRTCSRLS*PRQKPL
Trigger: CAGCGGCTTCTGCCTGGGCCAGCTCAACCTGGAGCA...GGTGCGGCGAACGCGCAGCAAGATCGGCTTCGGCATCCTGCTCAGCAAGGAGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR CAA 90 bp CGCGTCCGGTGCTCCCAGTACGCCACGCTGCACCAGTGGCTCGGCTaGGTGGCGTCCGGAGACATGCTGGCGTCTCTCATTTCTCAAGGA +
Preference number: 2 (lower is better)
Translates to: RVRCSQYATLHQWLG*VASGDMLASLISQG
Trigger: TCCTTGAGAAATGAGAGACGCCAGCATGTCTCCGGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR-3UTR TCA 90 bp CACACGCCGTCGGGCTCCTTGCTGAGCAGGATGCCGAAGCCGATCTTGCTGCGCGGTCGTAGAAGATGCTaGCGGCCTGGTCGTACACCG +
Preference number: 2 (lower is better)
Translates to: HTPSGSLLSRMPKPILLRGRRRC*RPGRTP
Trigger: CGGTGTACGACCAGGCCGTCAGCATCTTCTACGACC...GCGCAGCAAGATCGGCTTCGGCATCCTGCTCAGCAAGGAGCCCGACGGCGTGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR-3UTR GCA 90 bp GTTGTAGGCCCACACGCCGTCGGGCTCCTTGCTGAGCAGGATGCCGAAGCCGATCCAGGCAGAAGCCGCTaGCCTGAGGTAGGTCGTAGA +
Preference number: 2 (lower is better)
Translates to: VVGPHAVGLLAEQDAEADPGRSR*PEVGRR
Trigger: TCTACGACCTACCTCAGGGCAGCGGCTTCTGCCTGG...ATCGGCTTCGGCATCCTGCTCAGCAAGGAGCCCGACGGCGTGTGGGCCTACAAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR CAA 90 bp AGGCCACCATGCCACCAGCCATGCTCCCAAAGGGCCCCACAGACCTaGGTCCTGGCCCTCGATGTCCCCAGTCCAACACCAACCTCTCAT +
Preference number: 2 (lower is better)
Translates to: RPPCHQPCSQRAPQT*VLALDVPSPTPTSH
Trigger: ATGAGAGGTTGGTGTTGGACTGGGGACATCGAGGGCCAGGACCAAGGTCTGTGGGGCCCTTTGGGAGCATGGCTGGTGGCATGGTGGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000558937.1
3UTR-3UTR CCA 90 bp GGCTCCTTGCTGAGCAGGATGCCGAAGCCGATCTTGCTGCGCGTTCGCCGCACCCGTCCGGAGACATGCTaGCGTCTCTCATTTCTCAAG +
Preference number: 2 (lower is better)
Translates to: GSLLSRMPKPILLRVRRTRPETC*RLSFLK
Trigger: CTTGAGAAATGAGAGACGCCAGCATGTCTCCGGACG...GGTGCGGCGAACGCGCAGCAAGATCGGCTTCGGCATCCTGCTCAGCAAGGAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR-3UTR CCA 90 bp GGGGACAAAACAGTGATGAAGAGCACAAACCCTGGAGACAAACAGCCCATGGCTGGGCCCCACAGACCTTaGTCCTGGCCCTCGATGTCC +
Preference number: 2 (lower is better)
Translates to: GDKTVMKSTNPGDKQPMAGPHRP*SWPSMS
Trigger: GGACATCGAGGGCCAGGACCAAGGTCTGTGGGGCCC...AGCCATGGGCTGTTTGTCTCCAGGGTTTGTGCTCTTCATCACTGTTTTGTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000558937.1
3UTR-3UTR TCA 90 bp CTCGAGATGGTTCTCTGCAAGGTAGCAGGTGGGCTCAAGGCCCATTTCAGTCTTGGGTCAGAAATCCGCTaGAGCCCTACCTGCCCCTCT +
Preference number: 2 (lower is better)
Translates to: LEMVLCKVAGGLKAHFSLGSEIR*SPTCPS
Trigger: AGAGGGGCAGGTAGGGCTTCAGCGGATTTCTGACCC...AAGACTGAAATGGGCCTTGAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288840.10
3UTR-3UTR TCA 90 bp AGTGGGGGACAAAACAGTGATGAAGAGCACAAACCCTGGAGACAAACAGCCCATTATGCAGCCCCAGCCTaGGGGGCTGTCAGTCCCAGC +
Preference number: 2 (lower is better)
Translates to: SGGQNSDEEHKPWRQTAHYAAPA*GAVSPS
Trigger: GCTGGGACTGACAGCCCCTCAGGCTGGGGCTGCATA...ATGGGCTGTTTGTCTCCAGGGTTTGTGCTCTTCATCACTGTTTTGTCCCCCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000558937.1
3UTR-3UTR CCA 90 bp ATGGGTCAGAAATCCGCTGAAGCCCTACCTGCCCCTCTTTGTAAAAAGAAGACATGGGGGCTGTGTCTCTaGGCATCGGCCCCTCTCGAG +
Preference number: 2 (lower is better)
Translates to: MGQKSAEALPAPLCKKKTWGLCL*ASAPLE
Trigger: CTCGAGAGGGGCCGATGCCCAGAGACACAGCCCCCA...TGTCTTCTTTTTACAAAGAGGGGCAGGTAGGGCTTCAGCGGATTTCTGACCCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000288840.10
3UTR-3UTR CCA 90 bp CTCGAGATGGTTCTCTGCAAGGTAGCAGGTGGGCTCAAGGCCCATTTCAGTCTTGCCATCCCTATCCACTaGACACCCCATAGCCATGGG +
Preference number: 2 (lower is better)
Translates to: LEMVLCKVAGGLKAHFSLAIPIH*TPHSHG
Trigger: CCCATGGCTATGGGGTGTCCAGTGGATAGGGATGGC...AAGACTGAAATGGGCCTTGAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288840.10
3UTR-3UTR CCA 90 bp CTCGAGATGGTTCTCTGCAAGGTAGCAGGTGGGCTCAAGGCCCATTTCAGTCTTCCTCCTCCATCAGACTaGAAGAGCTTGTCCAGGATA +
Preference number: 2 (lower is better)
Translates to: LEMVLCKVAGGLKAHFSLPPPSD*KSLSRI
Trigger: TATCCTGGACAAGCTCTTCCAGTCTGATGGAGGAGG...AAGACTGAAATGGGCCTTGAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288840.10
3UTR-3UTR GCA 90 bp ACCTTCCAGAACCTCAACTTTTCCCTTTCACAAAGTAGAAATAAACCATCTGCCAATTATAAGCCAAAGTaGGTCTTTCTTGTTTTGTCC +
Preference number: 2 (lower is better)
Translates to: TFQNLNFSLSQSRNKPSANYKPK*VFLVLS
Trigger: GGACAAAACAAGAAAGACGCACTTTGGCTTATAATT...GGCAGATGGTTTATTTCTACTTTGTGAAAGGGAAAAGTTGAGGTTCTGGAAGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288840.10
3UTR GCA 72 bp GGCCCACGCGCGTCCGGTGCTCCCAGTACGCCACGCTaGACCAGTGGCTCGGCTTGGTGGCGTCCGGAGACA +
Preference number: 3 (lower is better)
Translates to: GPRASGAPSTPR*TSGSAWWRPET
Trigger: TGTCTCCGGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCGCGTGGGCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR CCA 72 bp CGCGTCCGGTGCTCCCAGTACGCCACGCTGCACCAGTaGCTCGGCTTGGTGGCGTCCGGAGACATGCTGGCG +
Preference number: 3 (lower is better)
Translates to: RVRCSQYATLHQ*LGLVASGDMLA
Trigger: CGCCAGCATGTCTCCGGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR-3UTR CAA 90 bp CGGCCTGGTCGTACACCGCATAGAGGCGGCCCACGCGCGTCCGGTGCTCCCAGTCACCAGTGGCTCGGCTaGGTGGCGTCCGGAGACATG +
Preference number: 3 (lower is better)
Translates to: RPGRTPHRGGPRASGAPSHQWLG*VASGDM
Trigger: CATGTCTCCGGACGCCACCAAGCCGAGCCACTGGTG...ACTGGGAGCACCGGACGCGCGTGGGCCGCCTCTATGCGGTGTACGACCAGGCCG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR TCA 72 bp GCGTTCGCCGCACCGACTCGCTGCGCTGCTCCAGGTTaGGCTGGCCCAGGCAGAAGCCGCTGCCCTGAGGTA +
Preference number: 3 (lower is better)
Translates to: AFAAPTRCAAPG*AGPGRSRCPEV
Trigger: TACCTCAGGGCAGCGGCTTCTGCCTGGGCCAGCTCAACCTGGAGCAGCGCAGCGAGTCGGTGCGGCGAACGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR CCA 72 bp GCTCCCAGTACGCCACGCTGCACCAGTGGCTCGGCTTaGTGGCGTCCGGAGACATGCTGGCGTCTCTCATTT +
Preference number: 3 (lower is better)
Translates to: APSTPRCTSGSA*WRPETCWRLSF
Trigger: AAATGAGAGACGCCAGCATGTCTCCGGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR CCA 72 bp GCCACCAGCCATGCTCCCAAAGGGCCCCACAGACCTTaGTCCTGGCCCTCGATGTCCCCAGTCCAACACCAA +
Preference number: 3 (lower is better)
Translates to: ATSHAPKGPHRP*SWPSMSPVQHQ
Trigger: TTGGTGTTGGACTGGGGACATCGAGGGCCAGGACCAAGGTCTGTGGGGCCCTTTGGGAGCATGGCTGGTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000558937.1
3UTR-3UTR CAA 90 bp GCGGCCGCCGGGCGCGTCCAGCGTCGGGGAGTTGACGAAGATGGGGTGCTCGCCTTTCTCAAGGAAAGTTaGATTCAGGTATTCCTCCGG +
Preference number: 3 (lower is better)
Translates to: AAAGRVQRRGVDEDGVLAFLKES*IQVFLR
Trigger: CCGGAGGAATACCTGAATCAAACTTTCCTTGAGAAA...GGCGAGCACCCCATCTTCGTCAACTCCCCGACGCTGGACGCGCCCGGCGGCCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR TCA 72 bp AGAAGCCGCTGCCCTGAGGTAGGTCGTAGAAGATGCTaGCGGCCTGGTCGTACACCGCATAGAGGCGGCCCA +
Preference number: 3 (lower is better)
Translates to: RSRCPEVGRRRC*RPGRTPHRGGP
Trigger: TGGGCCGCCTCTATGCGGTGTACGACCAGGCCGTCAGCATCTTCTACGACCTACCTCAGGGCAGCGGCTTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR CCA 72 bp AGCCATGCTCCCAAAGGGCCCCACAGACCTTGGTCCTaGCCCTCGATGTCCCCAGTCCAACACCAACCTCTC +
Preference number: 3 (lower is better)
Translates to: SHAPKGPHRPWS*PSMSPVQHQPL
Trigger: GAGAGGTTGGTGTTGGACTGGGGACATCGAGGGCCAGGACCAAGGTCTGTGGGGCCCTTTGGGAGCATGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000558937.1
3UTR-3UTR CAA 90 bp CCACGCGCGTCCGGTGCTCCCAGTACGCCACGCTGCACCAGTGGCTCGGCTTGGTTTCTCAAGGAAAGTTaGATTCAGGTATTCCTCCGG +
Preference number: 3 (lower is better)
Translates to: PRASGAPSTPRCTSGSAWFLKES*IQVFLR
Trigger: CCGGAGGAATACCTGAATCAAACTTTCCTTGAGAAA...CCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCGCGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR CCA 72 bp TACGGGGCTCGAGATGGTTCTCTGCAAGGTAGCAGGTaGGCTCAAGGCCCATTTCAGTCTTTGTTCCCCAGG +
Preference number: 3 (lower is better)
Translates to: YGARDGSLQGSR*AQGPFQSLFPR
Trigger: CCTGGGGAACAAAGACTGAAATGGGCCTTGAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAGCCCCGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288840.10
3UTR GCA 72 bp GTCCTAAAAAGATCTACGGGGCTCGAGATGGTTCTCTaGAAGGTAGCAGGTGGGCTCAAGGCCCATTTCAGT +
Preference number: 3 (lower is better)
Translates to: VLKRSTGLEMVL*KVAGGLKAHFS
Trigger: ACTGAAATGGGCCTTGAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAGCCCCGTAGATCTTTTTAGGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
3UTR-3UTR CAA 90 bp CTCGAGATGGTTCTCTGCAAGGTAGCAGGTGGGCTCAAGGCCCATTTCAGTCTTTCAGACTGGAAGAGCTaGTCCAGGATAAATGGCCAG +
Preference number: 3 (lower is better)
Translates to: LEMVLCKVAGGLKAHFSLSDWKS*SRINGQ
Trigger: CTGGCCATTTATCCTGGACAAGCTCTTCCAGTCTGA...AAGACTGAAATGGGCCTTGAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288840.10
3UTR-3UTR CAA 90 bp CTGGAGACAAACAGCCCATGGCTGTCCCAAGAGAATGCATATAAAGCGGCCAAGTTTCTCAAGGAAAGTTaGATTCAGGTATTCCTCCGG +
Preference number: 3 (lower is better)
Translates to: LETNSPWLSQENAYKAAKFLKES*IQVFLR
Trigger: CCGGAGGAATACCTGAATCAAACTTTCCTTGAGAAA...CTTGGCCGCTTTATATGCATTCTCTTGGGACAGCCATGGGCTGTTTGTCTCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000558937.1
3UTR-3UTR CAA 90 bp ACTATAATGCGAATACTTTATTATCGAGTGACTGGTATTAGCTTTTTGTCTGGGCAAAGTGCGTCTTTCTaGTTTTGTCCATATACACAC +
Preference number: 3 (lower is better)
Translates to: TIMRILYYRVTGISFLSGQSASF*FCPYTH
Trigger: GTGTGTATATGGACAAAACAAGAAAGACGCACTTTG...CCCAGACAAAAAGCTAATACCAGTCACTCGATAATAAAGTATTCGCATTATAGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR TCA 90 bp GGCTGTGTCTCTGGGCATCGGCCCCTCTCGAGGCCGGCAGGTGGCGGTGGCCGCCGCAGGGCGACAACATaGGGGAGCTCGCCGAGGCGG +
Preference number: 4 (lower is better)
Translates to: GCVSGHRPLSRPAGGGGRRRATT*GSSPRR
Trigger: CCGCCTCGGCGAGCTCCCTCATGTTGTCGCCCTGCG...GCGGCCACCGCCACCTGCCGGCCTCGAGAGGGGCCGATGCCCAGAGACACAGCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp GGCTGTGTCTCTGGGCATCGGCCCCTCTCGAGGCCGGCAGGTGGCGGTGGCCGCTGGGGGCTGTGTCTCTaGGCATCGGCCCCTCTCGAG +
Preference number: 4 (lower is better)
Translates to: GCVSGHRPLSRPAGGGGRWGLCL*ASAPLE
Trigger: CTCGAGAGGGGCCGATGCCCAGAGACACAGCCCCCA...GCGGCCACCGCCACCTGCCGGCCTCGAGAGGGGCCGATGCCCAGAGACACAGCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp CCGCATAGAGGCGGCCCACGCGCGTCCGGTGCTCCCAGTACGCCACGCTGCACCCCGGCTCAGCTCGGCTaGCCAAGCTCCCATCCTCGT +
Preference number: 4 (lower is better)
Translates to: PHRGGPRASGAPSTPRCTPAQLG*PSSHPR
Trigger: ACGAGGATGGGAGCTTGGGCAGCCGAGCTGAGCCGG...GGTGCAGCGTGGCGTACTGGGAGCACCGGACGCGCGTGGGCCGCCTCTATGCGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000557916.5
CDS-3UTR TCA 90 bp CGCATAGAGGCGGCCCACGCGCGTCCGGTGCTCCCAGTACGCCACGCTGCACCATGCGCTGCTCCAGGTTaGGCTGGCCCAGGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: RIEAAHARPVLPVRHAAPCAAPG*AGPGRS
Trigger: GCTTCTGCCTGGGCCAGCTCAACCTGGAGCAGCGCA...TGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCGCGTGGGCCGCCTCTATGCG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR TCA 90 bp GCGCGTCCGGTGCTCCCAGTACGCCACGCTGCACCAGTGGCTCGGCTTGGTGGCCCAGCGTCGGGGAGTTaGCGAAGATGGGGTGCTCGC +
Preference number: 4 (lower is better)
Translates to: ARPVLPVRHAAPVARLGGPASGS*RRWGAR
Trigger: GCGAGCACCCCATCTTCGTCAACTCCCCGACGCTGG...GCCACCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR GCA 90 bp CGCATAGAGGCGGCCCACGCGCGTCCGGTGCTCCCAGTACGCCACGCTGCACCATGCCGAAGCCGATCTTaGTGCGCGTTCGCCGCACCG +
Preference number: 4 (lower is better)
Translates to: RIEAAHARPVLPVRHAAPCRSRS*CAFAAP
Trigger: CGGTGCGGCGAACGCGCAGCAAGATCGGCTTCGGCA...TGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCGCGTGGGCCGCCTCTATGCG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR CCA 90 bp GAGGCGGCCCACGCGCGTCCGGTGCTCCCAGTACGCCACGCTGCACCAGTGGCTACCAGTGGCTCGGCTTaGTGGCGTCCGGAGACATGC +
Preference number: 4 (lower is better)
Translates to: EAAHARPVLPVRHAAPVATSGSA*WRPETC
Trigger: GCATGTCTCCGGACGCCACCAAGCCGAGCCACTGGT...AGCCACTGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCGCGTGGGCCGCCTC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR GCA 90 bp GCTGAGCAGGATGCCGAAGCCGATCTTGCTGCGCGTTCGCCGCACCGACTCGCTCCCACGCGCGTCCGGTaGTCCCAGTACGCCACGCTG +
Preference number: 4 (lower is better)
Translates to: AEQDAEADLAARSPHRLAPTRVR*SQYATL
Trigger: CAGCGTGGCGTACTGGGAGCACCGGACGCGCGTGGG...AGCGAGTCGGTGCGGCGAACGCGCAGCAAGATCGGCTTCGGCATCCTGCTCAGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR GCA 90 bp CGGTGCTCCCAGTACGCCACGCTGCACCAGTGGCTCGGCTTGGTGGCGTCCGGATGCCGAAGCCGATCTTaGTGCGCGTTCGCCGCACCG +
Preference number: 4 (lower is better)
Translates to: RCSQYATLHQWLGLVASGCRSRS*CAFAAP
Trigger: CGGTGCGGCGAACGCGCAGCAAGATCGGCTTCGGCA...TCCGGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGCACCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR CCA 90 bp GGCTCCTTGCTGAGCAGGATGCCGAAGCCGATCTTGCTGCGCGTTCGCCGCACCGCGGCGGCGAAGCTGTaGCAGCCGCACAGGGGCTTC +
Preference number: 4 (lower is better)
Translates to: GSLLSRMPKPILLRVRRTAAAKL*QPHRGF
Trigger: GAAGCCCCTGTGCGGCTGCCACAGCTTCGCCGCCGC...GGTGCGGCGAACGCGCAGCAAGATCGGCTTCGGCATCCTGCTCAGCAAGGAGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000557916.5
CDS-3UTR CCA 90 bp CGGCCTGGTCGTACACCGCATAGAGGCGGCCCACGCGCGTCCGGTGCTCCCAGTAGTGGCTCGGCTTGGTaGCGTCCGGAGACATGCTGG +
Preference number: 4 (lower is better)
Translates to: RPGRTPHRGGPRASGAPSSGSAW*RPETCW
Trigger: CCAGCATGTCTCCGGACGCCACCAAGCCGAGCCACT...ACTGGGAGCACCGGACGCGCGTGGGCCGCCTCTATGCGGTGTACGACCAGGCCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR CCA 90 bp CCACGCGCGTCCGGTGCTCCCAGTACGCCACGCTGCACCAGTGGCTCGGCTTGGACCAGTGGCTCGGCTTaGTGGCGTCCGGAGACATGC +
Preference number: 4 (lower is better)
Translates to: PRASGAPSTPRCTSGSAWTSGSA*WRPETC
Trigger: GCATGTCTCCGGACGCCACCAAGCCGAGCCACTGGT...CCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCGCGTGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR CCA 90 bp GCGGTTGTAGGCCCACACGCCGTCGGGCTCCTTGCTGAGCAGGATGCCGAAGCCGCCACGCTGCACCAGTaGCTCGGCTTGGTGGCGTCC +
Preference number: 4 (lower is better)
Translates to: AVVGPHAVGLLAEQDAEAATLHQ*LGLVAS
Trigger: GGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGGC...GGCTTCGGCATCCTGCTCAGCAAGGAGCCCGACGGCGTGTGGGCCTACAACCGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR TCA 90 bp CCACGCTGCACCAGTGGCTCGGCTTGGTGGCGTCCGGAGACATGCTGGCGTCTCCCAGCGAGCGCTCCTTaGGCCGCTTCAGCAGCGAGT +
Preference number: 4 (lower is better)
Translates to: PRCTSGSAWWRPETCWRLPASAP*AASAAS
Trigger: ACTCGCTGCTGAAGCGGCTCAAGGAGCGCTCGCTGG...GAGACGCCAGCATGTCTCCGGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000557916.5
CDS-3UTR TCA 90 bp GCGCGTCCGGTGCTCCCAGTACGCCACGCTGCACCAGTGGCTCGGCTTGGTGGCGGTCGTAGAAGATGCTaGCGGCCTGGTCGTACACCG +
Preference number: 4 (lower is better)
Translates to: ARPVLPVRHAAPVARLGGGRRRC*RPGRTP
Trigger: CGGTGTACGACCAGGCCGTCAGCATCTTCTACGACC...GCCACCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR GCA 90 bp GGATGCCGAAGCCGATCTTGCTGCGCGTTCGCCGCACCGACTCGCTGCGCTGCTAGCTCCACGGCGTGCTaGAGGTCGGGCCAGCGAAAG +
Preference number: 4 (lower is better)
Translates to: GCRSRSCCAFAAPTRCAASSTAC*RSGQRK
Trigger: CTTTCGCTGGCCCGACCTGCAGCACGCCGTGGAGCT...AGCAGCGCAGCGAGTCGGTGCGGCGAACGCGCAGCAAGATCGGCTTCGGCATCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000557916.5
CDS-3UTR GCA 90 bp GCCGCGGTTGTAGGCCCACACGCCGTCGGGCTCCTTGCTGAGCAGGATGCCGAACCCAGTACGCCACGCTaGACCAGTGGCTCGGCTTGG +
Preference number: 4 (lower is better)
Translates to: AAVVGPHAVGLLAEQDAEPSTPR*TSGSAW
Trigger: CCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGG...TTCGGCATCCTGCTCAGCAAGGAGCCCGACGGCGTGTGGGCCTACAACCGCGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR GCA 90 bp CGAAGATGGGGTGCTCGCCGCGGTTGTAGGCCCACACGCCGTCGGGCTCCTTGCCGAAGCCGATCTTGCTaGGCGTTCGCCGCACCGACT +
Preference number: 4 (lower is better)
Translates to: RRWGARRGCRPTRRRAPCRSRSC*AFAAPT
Trigger: AGTCGGTGCGGCGAACGCGCAGCAAGATCGGCTTCG...GCAAGGAGCCCGACGGCGTGTGGGCCTACAACCGCGGCGAGCACCCCATCTTCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR GCA 90 bp GCGGCCGCCGGGCGCGTCCAGCGTCGGGGAGTTGACGAAGATGGGGTGCTCGCCTGGCGTCCGGAGACATaGTGGCGTCTCTCATTTCTC +
Preference number: 4 (lower is better)
Translates to: AAAGRVQRRGVDEDGVLAWRPET*WRLSFL
Trigger: GAGAAATGAGAGACGCCAGCATGTCTCCGGACGCCA...GGCGAGCACCCCATCTTCGTCAACTCCCCGACGCTGGACGCGCCCGGCGGCCGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR CCA 90 bp ATAGAGGCGGCCCACGCGCGTCCGGTGCTCCCAGTACGCCACGCTGCACCAGTGTGCTCCAGGTTGAGCTaGCCCAGGCAGAAGCCGCTG +
Preference number: 4 (lower is better)
Translates to: IEAAHARPVLPVRHAAPVCSRLS*PRQKPL
Trigger: CAGCGGCTTCTGCCTGGGCCAGCTCAACCTGGAGCA...CACTGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCGCGTGGGCCGCCTCTAT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR CAA 72 bp TCGGGCTCCTTGCTGAGCAGGATGCCGAAGCCGATCTaGCTGCGCGTTCGCCGCACCGACTCGCTGCGCTGC +
Preference number: 4 (lower is better)
Translates to: SGSLLSRMPKPI*LRVRRTDSLRC
Trigger: GCAGCGCAGCGAGTCGGTGCGGCGAACGCGCAGCAAGATCGGCTTCGGCATCCTGCTCAGCAAGGAGCCCGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR GCA 90 bp GCGCGTCCGGTGCTCCCAGTACGCCACGCTGCACCAGTGGCTCGGCTTGGTGGCACGGTTTTGAGTTCCTaGTCCAGCAGCAGCAGCCGC +
Preference number: 4 (lower is better)
Translates to: ARPVLPVRHAAPVARLGGTVLSS*SSSSSR
Trigger: GCGGCTGCTGCTGCTGGAGCAGGAACTCAAAACCGT...GCCACCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000557916.5
CDS-3UTR GCA 90 bp CACACGCCGTCGGGCTCCTTGCTGAGCAGGATGCCGAAGCCGATCTTGCTGCGCACCGACTCGCTGCGCTaGTCCAGGTTGAGCTGGCCC +
Preference number: 4 (lower is better)
Translates to: HTPSGSLLSRMPKPILLRTDSLR*SRLSWP
Trigger: GGGCCAGCTCAACCTGGAGCAGCGCAGCGAGTCGGT...GCGCAGCAAGATCGGCTTCGGCATCCTGCTCAGCAAGGAGCCCGACGGCGTGTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR TCA 90 bp GTAGGCCCACACGCCGTCGGGCTCCTTGCTGAGCAGGATGCCGAAGCCGATCTTTGCGCTGCTCCAGGTTaGGCTGGCCCAGGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: VGPHAVGLLAEQDAEADLCAAPG*AGPGRS
Trigger: GCTTCTGCCTGGGCCAGCTCAACCTGGAGCAGCGCA...AAGATCGGCTTCGGCATCCTGCTCAGCAAGGAGCCCGACGGCGTGTGGGCCTAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR GCA 90 bp CCACGCTGCACCAGTGGCTCGGCTTGGTGGCGTCCGGAGACATGCTGGCGTCTCCCAGGCAGAAGCCGCTaGCCTGAGGTAGGTCGTAGA +
Preference number: 4 (lower is better)
Translates to: PRCTSGSAWWRPETCWRLPGRSR*PEVGRR
Trigger: TCTACGACCTACCTCAGGGCAGCGGCTTCTGCCTGG...GAGACGCCAGCATGTCTCCGGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR GCA 90 bp CACACGCCGTCGGGCTCCTTGCTGAGCAGGATGCCGAAGCCGATCTTGCTGCGCCGAAGCCGATCTTGCTaGGCGTTCGCCGCACCGACT +
Preference number: 4 (lower is better)
Translates to: HTPSGSLLSRMPKPILLRRSRSC*AFAAPT
Trigger: AGTCGGTGCGGCGAACGCGCAGCAAGATCGGCTTCG...GCGCAGCAAGATCGGCTTCGGCATCCTGCTCAGCAAGGAGCCCGACGGCGTGTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR GCA 90 bp GCCACCAGGCCACCATGCCACCAGCCATGCTCCCAAAGGGCCCCACAGACCTTGCCATGCCACCAGCCATaGTCCCAAAGGGCCCCACAG +
Preference number: 4 (lower is better)
Translates to: ATRPPCHQPCSQRAPQTLPCHQP*SQRAPQ
Trigger: CTGTGGGGCCCTTTGGGAGCATGGCTGGTGGCATGG...CAAGGTCTGTGGGGCCCTTTGGGAGCATGGCTGGTGGCATGGTGGCCTGGTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000558937.1
CDS-3UTR CCA 90 bp GTAGGCCCACACGCCGTCGGGCTCCTTGCTGAGCAGGATGCCGAAGCCGATCTTCCGAGAGTAGGGAGGTaGCGGAGATTCGGGCCCGCA +
Preference number: 4 (lower is better)
Translates to: VGPHAVGLLAEQDAEADLPRVGR*RRFGPA
Trigger: TGCGGGCCCGAATCTCCGCCACCTCCCTACTCTCGG...AAGATCGGCTTCGGCATCCTGCTCAGCAAGGAGCCCGACGGCGTGTGGGCCTAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000557916.5
CDS-3UTR CCA 90 bp GCTGAGCAGGATGCCGAAGCCGATCTTGCTGCGCGTTCGCCGCACCGACTCGCTAGTGGCTCGGCTTGGTaGCGTCCGGAGACATGCTGG +
Preference number: 4 (lower is better)
Translates to: AEQDAEADLAARSPHRLASGSAW*RPETCW
Trigger: CCAGCATGTCTCCGGACGCCACCAAGCCGAGCCACT...AGCGAGTCGGTGCGGCGAACGCGCAGCAAGATCGGCTTCGGCATCCTGCTCAGC
66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR CCA 90 bp ACCAGGCCACCATGCCACCAGCCATGCTCCCAAAGGGCCCCACAGACCTTGGTCGGGCCCCACAGACCTTaGTCCTGGCCCTCGATGTCC +
Preference number: 4 (lower is better)
Translates to: TRPPCHQPCSQRAPQTLVGPHRP*SWPSMS
Trigger: GGACATCGAGGGCCAGGACCAAGGTCTGTGGGGCCC...GACCAAGGTCTGTGGGGCCCTTTGGGAGCATGGCTGGTGGCATGGTGGCCTGGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000558937.1
CDS-3UTR TCA 90 bp GGCTGTGTCTCTGGGCATCGGCCCCTCTCGAGGCCGGCAGGTGGCGGTGGCCGCGCGGGTGTCAACACATaGGTGGAAGCTGTAAAAATC +
Preference number: 4 (lower is better)
Translates to: GCVSGHRPLSRPAGGGGRAGVNT*VEAVKI
Trigger: GATTTTTACAGCTTCCACTCATGTGTTGACACCCGC...GCGGCCACCGCCACCTGCCGGCCTCGAGAGGGGCCGATGCCCAGAGACACAGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR TCA 90 bp GGGCTCCTTGCTGAGCAGGATGCCGAAGCCGATCTTGCTGCGCGTTCGCCGCACGGTCGTAGAAGATGCTaGCGGCCTGGTCGTACACCG +
Preference number: 4 (lower is better)
Translates to: GLLAEQDAEADLAARSPHGRRRC*RPGRTP
Trigger: CGGTGTACGACCAGGCCGTCAGCATCTTCTACGACC...GTGCGGCGAACGCGCAGCAAGATCGGCTTCGGCATCCTGCTCAGCAAGGAGCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR GCA 90 bp ACCAGGCCACCATGCCACCAGCCATGCTCCCAAAGGGCCCCACAGACCTTGGTCCATGCCCACAAGGTATaGAGCCCCAGCCTGAGGGGC +
Preference number: 4 (lower is better)
Translates to: TRPPCHQPCSQRAPQTLVHAHKV*SPSLRG
Trigger: GCCCCTCAGGCTGGGGCTGCATACCTTGTGGGCATG...GACCAAGGTCTGTGGGGCCCTTTGGGAGCATGGCTGGTGGCATGGTGGCCTGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000558937.1
3UTR CAA 72 bp TGCTCCCAGTACGCCACGCTGCACCAGTGGCTCGGCTaGGTGGCGTCCGGAGACATGCTGGCGTCTCTCATT +
Preference number: 4 (lower is better)
Translates to: CSQYATLHQWLG*VASGDMLASLI
Trigger: AATGAGAGACGCCAGCATGTCTCCGGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
3UTR CAA 72 bp TGCCACCAGCCATGCTCCCAAAGGGCCCCACAGACCTaGGTCCTGGCCCTCGATGTCCCCAGTCCAACACCA +
Preference number: 4 (lower is better)
Translates to: CHQPCSQRAPQT*VLALDVPSPTP
Trigger: TGGTGTTGGACTGGGGACATCGAGGGCCAGGACCAAGGTCTGTGGGGCCCTTTGGGAGCATGGCTGGTGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000558937.1
CDS-3UTR GCA 90 bp CAGCCATCCAGACATGCCCACAAGGTATGCAGCCCCAGCCTGAGGGGCTGTCAGGCCACCAGGCCACCATaGCACCAGCCATGCTCCCAA +
Preference number: 4 (lower is better)
Translates to: QPSRHAHKVCSPSLRGCQATRPP*HQPCSQ
Trigger: TTGGGAGCATGGCTGGTGGCATGGTGGCCTGGTGGC...CTGACAGCCCCTCAGGCTGGGGCTGCATACCTTGTGGGCATGTCTGGATGGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000558937.1
CDS-3UTR GCA 90 bp GGGCTCCTTGCTGAGCAGGATGCCGAAGCCGATCTTGCTGCGCGTTCGCCGCACTGGCGTCCGGAGACATaGTGGCGTCTCTCATTTCTC +
Preference number: 4 (lower is better)
Translates to: GLLAEQDAEADLAARSPHWRPET*WRLSFL
Trigger: GAGAAATGAGAGACGCCAGCATGTCTCCGGACGCCA...GTGCGGCGAACGCGCAGCAAGATCGGCTTCGGCATCCTGCTCAGCAAGGAGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR GCA 90 bp ATGCCACCAGCCATGCTCCCAAAGGGCCCCACAGACCTTGGTCCTGGCCCTCGAACAGCCATCCAGACATaGCCACAAGGTATGCAGCCC +
Preference number: 4 (lower is better)
Translates to: MPPAMLPKGPTDLGPGPRTAIQT*PQGMQP
Trigger: GGGCTGCATACCTTGTGGGCATGTCTGGATGGCTGT...TCGAGGGCCAGGACCAAGGTCTGTGGGGCCCTTTGGGAGCATGGCTGGTGGCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000558937.1
CDS-3UTR CCA 90 bp ACCAGGCCACCATGCCACCAGCCATGCTCCCAAAGGGCCCCACAGACCTTGGTCATCGGACAGATCCAGTaGCTTGTACTCGTCGCGAGG +
Preference number: 4 (lower is better)
Translates to: TRPPCHQPCSQRAPQTLVIGQIQ*LVLVAR
Trigger: CCTCGCGACGAGTACAAGCCACTGGATCTGTCCGAT...GACCAAGGTCTGTGGGGCCCTTTGGGAGCATGGCTGGTGGCATGGTGGCCTGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000558937.1
CDS-3UTR CCA 90 bp GCATGCCACCAGGCCACCATGCCACCAGCCATGCTCCCAAAGGGCCCCACAGACACTGCTACCATGGCATaGATGTGGGGTGAGGGAAGA +
Preference number: 4 (lower is better)
Translates to: ACHQATMPPAMLPKGPTDTATMA*MWGEGR
Trigger: TCTTCCCTCACCCCACATCCATGCCATGGTAGCAGT...GTCTGTGGGGCCCTTTGGGAGCATGGCTGGTGGCATGGTGGCCTGGTGGCATGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000558937.1
CDS-3UTR TCA 90 bp ACAGACCTTGGTCCTGGCCCTCGATGTCCCCAGTCCAACACCAACCTCTCATTTTATGCAGCCCCAGCCTaGGGGGCTGTCAGTCCCAGC +
Preference number: 4 (lower is better)
Translates to: TDLGPGPRCPQSNTNLSFYAAPA*GAVSPS
Trigger: GCTGGGACTGACAGCCCCTCAGGCTGGGGCTGCATA...AAATGAGAGGTTGGTGTTGGACTGGGGACATCGAGGGCCAGGACCAAGGTCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000558937.1
CDS-3UTR TCA 90 bp CCCAAAGGGCCCCACAGACCTTGGTCCTGGCCCTCGATGTCCCCAGTCCAACACGGCATGGATGTGGGGTaGGGGAAGAATGTCTCAGAT +
Preference number: 4 (lower is better)
Translates to: PKGPHRPWSWPSMSPVQHGMDVG*GKNVSD
Trigger: ATCTGAGACATTCTTCCCTCACCCCACATCCATGCC...GTGTTGGACTGGGGACATCGAGGGCCAGGACCAAGGTCTGTGGGGCCCTTTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000558937.1
CDS-3UTR CCA 90 bp CGGTGCTCCCAGTACGCCACGCTGCACCAGTGGCTCGGCTTGGTGGCGTCCGGACAGTGTAAGACAATGTaGAATCGGACAGATCCAGTG +
Preference number: 4 (lower is better)
Translates to: RCSQYATLHQWLGLVASGQCKTM*NRTDPV
Trigger: CACTGGATCTGTCCGATTCCACATTGTCTTACACTG...TCCGGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGCACCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR CCA 90 bp GTAGGCCCACACGCCGTCGGGCTCCTTGCTGAGCAGGATGCCGAAGCCGATCTTCGTCCGGAGACATGCTaGCGTCTCTCATTTCTCAAG +
Preference number: 4 (lower is better)
Translates to: VGPHAVGLLAEQDAEADLRPETC*RLSFLK
Trigger: CTTGAGAAATGAGAGACGCCAGCATGTCTCCGGACG...AAGATCGGCTTCGGCATCCTGCTCAGCAAGGAGCCCGACGGCGTGTGGGCCTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR GCA 90 bp ATGGGTCAGAAATCCGCTGAAGCCCTACCTGCCCCTCTTTGTAAAAAGAAGACACAGCCCGCCCCACGCTaGCCTCGGACGCTTCGTGCG +
Preference number: 4 (lower is better)
Translates to: MGQKSAEALPAPLCKKKTQPAPR*PRTLRA
Trigger: CGCACGAAGCGTCCGAGGGCAGCGTGGGGCGGGCTG...TGTCTTCTTTTTACAAAGAGGGGCAGGTAGGGCTTCAGCGGATTTCTGACCCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp CTAAAAAGATCTACGGGGCTCGAGATGGTTCTCTGCAAGGTAGCAGGTGGGCTCCCGGCTCAGCTCGGCTaGCCAAGCTCCCATCCTCGT +
Preference number: 4 (lower is better)
Translates to: LKRSTGLEMVLCKVAGGLPAQLG*PSSHPR
Trigger: ACGAGGATGGGAGCTTGGGCAGCCGAGCTGAGCCGG...GAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAGCCCCGTAGATCTTTTTAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp CTAAAAAGATCTACGGGGCTCGAGATGGTTCTCTGCAAGGTAGCAGGTGGGCTCAGCTCCACGGCGTGCTaGAGGTCGGGCCAGCGAAAG +
Preference number: 4 (lower is better)
Translates to: LKRSTGLEMVLCKVAGGLSSTAC*RSGQRK
Trigger: CTTTCGCTGGCCCGACCTGCAGCACGCCGTGGAGCT...GAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAGCCCCGTAGATCTTTTTAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp GCATGCCACCAGGCCACCATGCCACCAGCCATGCTCCCAAAGGGCCCCACAGACGGTACATTTGGCCCTTaGAGAAAAGTGGGGGACAAA +
Preference number: 4 (lower is better)
Translates to: ACHQATMPPAMLPKGPTDGTFGP*RKVGDK
Trigger: TTTGTCCCCCACTTTTCTGCAAGGGCCAAATGTACC...GTCTGTGGGGCCCTTTGGGAGCATGGCTGGTGGCATGGTGGCCTGGTGGCATGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000558937.1
CDS-3UTR CCA 90 bp CTAAAAAGATCTACGGGGCTCGAGATGGTTCTCTGCAAGGTAGCAGGTGGGCTCCCGAGAGTAGGGAGGTaGCGGAGATTCGGGCCCGCA +
Preference number: 4 (lower is better)
Translates to: LKRSTGLEMVLCKVAGGLPRVGR*RRFGPA
Trigger: TGCGGGCCCGAATCTCCGCCACCTCCCTACTCTCGG...GAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAGCCCCGTAGATCTTTTTAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp CCACGCTGCACCAGTGGCTCGGCTTGGTGGCGTCCGGAGACATGCTGGCGTCTCCAGTGTAAGACAATGTaGAATCGGACAGATCCAGTG +
Preference number: 4 (lower is better)
Translates to: PRCTSGSAWWRPETCWRLQCKTM*NRTDPV
Trigger: CACTGGATCTGTCCGATTCCACATTGTCTTACACTG...GAGACGCCAGCATGTCTCCGGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGG
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR TCA 90 bp CTCGAGATGGTTCTCTGCAAGGTAGCAGGTGGGCTCAAGGCCCATTTCAGTCTTAGCCCTTGGCGAAGCTaGTGCGGACGCTGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: LEMVLCKVAGGLKAHFSLSPWRS*CGRCWG
Trigger: ACCCCAACAGCGTCCGCATCAGCTTCGCCAAGGGCT...AAGACTGAAATGGGCCTTGAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp ATGGGTCAGAAATCCGCTGAAGCCCTACCTGCCCCTCTTTGTAAAAAGAAGACACCCTCGGACGCTTCGTaGGCCGAGGCTGCCGAGGTC +
Preference number: 4 (lower is better)
Translates to: MGQKSAEALPAPLCKKKTPSDAS*AEAAEV
Trigger: GACCTCGGCAGCCTCGGCGCACGAAGCGTCCGAGGG...TGTCTTCTTTTTACAAAGAGGGGCAGGTAGGGCTTCAGCGGATTTCTGACCCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp GTCCTGGCCCTCGATGTCCCCAGTCCAACACCAACCTCTCATTTCTCAAGGAAACAGTCCCAGCCAGCATaGCACCAGGCCACCATGCCA +
Preference number: 4 (lower is better)
Translates to: VLALDVPSPTPTSHFSRKQSQPA*HQATMP
Trigger: TGGCATGGTGGCCTGGTGGCATGCTGGCTGGGACTG...TTTCCTTGAGAAATGAGAGGTTGGTGTTGGACTGGGGACATCGAGGGCCAGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000558937.1
CDS-3UTR GCA 90 bp CTCGAGATGGTTCTCTGCAAGGTAGCAGGTGGGCTCAAGGCCCATTTCAGTCTTCCAGGCAGAAGCCGCTaGCCTGAGGTAGGTCGTAGA +
Preference number: 4 (lower is better)
Translates to: LEMVLCKVAGGLKAHFSLPGRSR*PEVGRR
Trigger: TCTACGACCTACCTCAGGGCAGCGGCTTCTGCCTGG...AAGACTGAAATGGGCCTTGAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp ATGGGTCAGAAATCCGCTGAAGCCCTACCTGCCCCTCTTTGTAAAAAGAAGACAGCCACGCTGCACCAGTaGCTCGGCTTGGTGGCGTCC +
Preference number: 4 (lower is better)
Translates to: MGQKSAEALPAPLCKKKTATLHQ*LGLVAS
Trigger: GGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGGC...TGTCTTCTTTTTACAAAGAGGGGCAGGTAGGGCTTCAGCGGATTTCTGACCCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR TCA 90 bp AATATCTCAAAAACCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTAGGTCGCAGCCCCACATaGAGCTCCGCCGCGGAGCGC +
Preference number: 4 (lower is better)
Translates to: NISKTIHQTQAFPPSSAVGRSPT*SSAAER
Trigger: GCGCTCCGCGGCGGAGCTTCATGTGGGGCTGCGACC...TACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGGTTTTTGAGATATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR TCA 90 bp ATGGGTCAGAAATCCGCTGAAGCCCTACCTGCCCCTCTTTGTAAAAAGAAGACATGCGCTGCTCCAGGTTaGGCTGGCCCAGGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: MGQKSAEALPAPLCKKKTCAAPG*AGPGRS
Trigger: GCTTCTGCCTGGGCCAGCTCAACCTGGAGCAGCGCA...TGTCTTCTTTTTACAAAGAGGGGCAGGTAGGGCTTCAGCGGATTTCTGACCCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR TCA 90 bp CGTCCGGAGACATGCTGGCGTCTCTCATTTCTCAAGGAAAGTTTGATTCAGGTACCAGCGTCGGGGAGTTaGCGAAGATGGGGTGCTCGC +
Preference number: 4 (lower is better)
Translates to: RPETCWRLSFLKESLIQVPASGS*RRWGAR
Trigger: GCGAGCACCCCATCTTCGTCAACTCCCCGACGCTGG...TACCTGAATCAAACTTTCCTTGAGAAATGAGAGACGCCAGCATGTCTCCGGACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR GCA 90 bp CGTCCGGAGACATGCTGGCGTCTCTCATTTCTCAAGGAAAGTTTGATTCAGGTATTCAGCTCCACGGCGTaGTGCAGGTCGGGCCAGCGA +
Preference number: 4 (lower is better)
Translates to: RPETCWRLSFLKESLIQVFSSTA*CRSGQR
Trigger: TCGCTGGCCCGACCTGCAGCACGCCGTGGAGCTGAA...TACCTGAATCAAACTTTCCTTGAGAAATGAGAGACGCCAGCATGTCTCCGGACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000557916.5
CDS-3UTR GCA 90 bp CGTCCGGAGACATGCTGGCGTCTCTCATTTCTCAAGGAAAGTTTGATTCAGGTACCCAGTACGCCACGCTaGACCAGTGGCTCGGCTTGG +
Preference number: 4 (lower is better)
Translates to: RPETCWRLSFLKESLIQVPSTPR*TSGSAW
Trigger: CCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGG...TACCTGAATCAAACTTTCCTTGAGAAATGAGAGACGCCAGCATGTCTCCGGACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR GCA 90 bp TCTCTCATTTCTCAAGGAAAGTTTGATTCAGGTATTCCTCCGGATGTAGGGGTCCCCACGCGCGTCCGGTaGTCCCAGTACGCCACGCTG +
Preference number: 4 (lower is better)
Translates to: SLISQGKFDSGIPPDVGVPTRVR*SQYATL
Trigger: CAGCGTGGCGTACTGGGAGCACCGGACGCGCGTGGG...GACCCCTACATCCGGAGGAATACCTGAATCAAACTTTCCTTGAGAAATGAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR GCA 90 bp AATATCTCAAAAACCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTAGGCTCGGGCGCGTGCTaGAGGCCCGAGCGCTCGAAG +
Preference number: 4 (lower is better)
Translates to: NISKTIHQTQAFPPSSAVGSGAC*RPERSK
Trigger: CTTCGAGCGCTCGGGCCTGCAGCACGCGCCCGAGCC...TACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGGTTTTTGAGATATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp ATGGCTATGATTTTGGCGACTGCTACCATGGCATGGATGTGGGGTGAGGGAAGACACAGACCTTGGTCCTaGCCCTCGATGTCCCCAGTC +
Preference number: 4 (lower is better)
Translates to: MAMILATATMAWMWGEGRHRPWS*PSMSPV
Trigger: GACTGGGGACATCGAGGGCCAGGACCAAGGTCTGTG...TCTTCCCTCACCCCACATCCATGCCATGGTAGCAGTCGCCAAAATCATAGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000558937.1
CDS-3UTR GCA 90 bp CTCGAGATGGTTCTCTGCAAGGTAGCAGGTGGGCTCAAGGCCCATTTCAGTCTTCTCGAGATGGTTCTCTaGAAGGTAGCAGGTGGGCTC +
Preference number: 4 (lower is better)
Translates to: LEMVLCKVAGGLKAHFSLLEMVL*KVAGGL
Trigger: GAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAG...AAGACTGAAATGGGCCTTGAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp AATATCTCAAAAACCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTAGCGGCGGCGAAGCTGTaGCAGCCGCACAGGGGCTTC +
Preference number: 4 (lower is better)
Translates to: NISKTIHQTQAFPPSSAVAAAKL*QPHRGF
Trigger: GAAGCCCCTGTGCGGCTGCCACAGCTTCGCCGCCGC...TACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGGTTTTTGAGATATT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp CTGGCGTCTCTCATTTCTCAAGGAAAGTTTGATTCAGGTATTCCTCCGGATGTAGCCACGCTGCACCAGTaGCTCGGCTTGGTGGCGTCC +
Preference number: 4 (lower is better)
Translates to: LASLISQGKFDSGIPPDVATLHQ*LGLVAS
Trigger: GGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGGC...TACATCCGGAGGAATACCTGAATCAAACTTTCCTTGAGAAATGAGAGACGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR CCA 90 bp CTGGAGACAAACAGCCCATGGCTGTCCCAAGAGAATGCATATAAAGCGGCCAAGTGGCGACTGCTACCATaGCATGGATGTGGGGTGAGG +
Preference number: 4 (lower is better)
Translates to: LETNSPWLSQENAYKAAKWRLLP*HGCGVR
Trigger: CCTCACCCCACATCCATGCCATGGTAGCAGTCGCCA...CTTGGCCGCTTTATATGCATTCTCTTGGGACAGCCATGGGCTGTTTGTCTCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000558937.1
CDS-3UTR TCA 90 bp CCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTATCATTTTCTTTATTCCTCAAACGCACACTaGGGGCCCCCGGAGGAGCGC +
Preference number: 4 (lower is better)
Translates to: PYTKPRLFHLALLYHFLYSSNAH*GPPEER
Trigger: GCGCTCCTCCGGGGGCCCTCAGTGTGCGTTTGAGGA...ATAAAGAAAATGATACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR TCA 90 bp ATGGGTCAGAAATCCGCTGAAGCCCTACCTGCCCCTCTTTGTAAAAAGAAGACAGGTCGTAGAAGATGCTaGCGGCCTGGTCGTACACCG +
Preference number: 4 (lower is better)
Translates to: MGQKSAEALPAPLCKKKTGRRRC*RPGRTP
Trigger: CGGTGTACGACCAGGCCGTCAGCATCTTCTACGACC...TGTCTTCTTTTTACAAAGAGGGGCAGGTAGGGCTTCAGCGGATTTCTGACCCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp CTGGCGTCTCTCATTTCTCAAGGAAAGTTTGATTCAGGTATTCCTCCGGATGTAACCGACTCGCTGCGCTaGTCCAGGTTGAGCTGGCCC +
Preference number: 4 (lower is better)
Translates to: LASLISQGKFDSGIPPDVTDSLR*SRLSWP
Trigger: GGGCCAGCTCAACCTGGAGCAGCGCAGCGAGTCGGT...TACATCCGGAGGAATACCTGAATCAAACTTTCCTTGAGAAATGAGAGACGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR CCA 90 bp CTCGAGATGGTTCTCTGCAAGGTAGCAGGTGGGCTCAAGGCCCATTTCAGTCTTCAAAAGTTGTGCGGCTaGTCCATGAGCACAAAGCGC +
Preference number: 4 (lower is better)
Translates to: LEMVLCKVAGGLKAHFSLQKLCG*SMSTKR
Trigger: GCGCTTTGTGCTCATGGACCAGCCGCACAACTTTTG...AAGACTGAAATGGGCCTTGAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp TGGGCAGGAAGGAACAACAGAACTTTCTCTGGTTTACTTAAGAGTAAATGTGACCGGCCAGCGGCTACATaGACCACAGCGGCGGGGCTG +
Preference number: 4 (lower is better)
Translates to: WAGRNNRTFSGLLKSKCDRPAAT*TTAAGL
Trigger: CAGCCCCGCCGCTGTGGTCCATGTAGCCGCTGGCCG...GTCACATTTACTCTTAAGTAAACCAGAGAAAGTTCTGTTGTTCCTTCCTGCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp AACAGCCCATGGCTGTCCCAAGAGAATGCATATAAAGCGGCCAAGTGGAGTGCCGAAGAGCACAAACCCTaGAGACAAACAGCCCATGGC +
Preference number: 4 (lower is better)
Translates to: NSPWLSQENAYKAAKWSAEEHKP*RQTAHG
Trigger: GCCATGGGCTGTTTGTCTCCAGGGTTTGTGCTCTTC...GGCACTCCACTTGGCCGCTTTATATGCATTCTCTTGGGACAGCCATGGGCTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000558937.1
CDS-3UTR TCA 90 bp AATATCTCAAAAACCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTATGTGCGGCTGGTCCATaGGCACAAAGCGCTCGCGCG +
Preference number: 4 (lower is better)
Translates to: NISKTIHQTQAFPPSSAVCAAGP*AQSARA
Trigger: CGCGCGAGCGCTTTGTGCTCATGGACCAGCCGCACA...TACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGGTTTTTGAGATATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR TCA 90 bp AGAAATCCGCTGAAGCCCTACCTGCCCCTCTTTGTAAAAAGAAGACAGTTTAAACCAGCGTCGGGGAGTTaGCGAAGATGGGGTGCTCGC +
Preference number: 4 (lower is better)
Translates to: RNPLKPYLPLFVKRRQFKPASGS*RRWGAR
Trigger: GCGAGCACCCCATCTTCGTCAACTCCCCGACGCTGG...TTTAAACTGTCTTCTTTTTACAAAGAGGGGCAGGTAGGGCTTCAGCGGATTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp AATATCTCAAAAACCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTATTCAGCTCCACGGCGTaGTGCAGGTCGGGCCAGCGA +
Preference number: 4 (lower is better)
Translates to: NISKTIHQTQAFPPSSAVFSSTA*CRSGQR
Trigger: TCGCTGGCCCGACCTGCAGCACGCCGTGGAGCTGAA...TACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGGTTTTTGAGATATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp AGAAATCCGCTGAAGCCCTACCTGCCCCTCTTTGTAAAAAGAAGACAGTTTAAACCCAGTACGCCACGCTaGACCAGTGGCTCGGCTTGG +
Preference number: 4 (lower is better)
Translates to: RNPLKPYLPLFVKRRQFKPSTPR*TSGSAW
Trigger: CCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGG...TTTAAACTGTCTTCTTTTTACAAAGAGGGGCAGGTAGGGCTTCAGCGGATTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp AATATCTCAAAAACCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTATGCCGAAGCCGATCTTaGTGCGCGTTCGCCGCACCG +
Preference number: 4 (lower is better)
Translates to: NISKTIHQTQAFPPSSAVCRSRS*CAFAAP
Trigger: CGGTGCGGCGAACGCGCAGCAAGATCGGCTTCGGCA...TACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGGTTTTTGAGATATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp CTAAAAAGATCTACGGGGCTCGAGATGGTTCTCTGCAAGGTAGCAGGTGGGCTCAAGCGCTTAACTACATaGGCTTTTCCCGCAGGATCC +
Preference number: 4 (lower is better)
Translates to: LKRSTGLEMVLCKVAGGLKRLTT*AFPAGS
Trigger: GGATCCTGCGGGAAAAGCCCATGTAGTTAAGCGCTT...GAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAGCCCCGTAGATCTTTTTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp CTGGCGTCTCTCATTTCTCAAGGAAAGTTTGATTCAGGTATTCCTCCGGATGTATGCTCCAGGTTGAGCTaGCCCAGGCAGAAGCCGCTG +
Preference number: 4 (lower is better)
Translates to: LASLISQGKFDSGIPPDVCSRLS*PRQKPL
Trigger: CAGCGGCTTCTGCCTGGGCCAGCTCAACCTGGAGCA...TACATCCGGAGGAATACCTGAATCAAACTTTCCTTGAGAAATGAGAGACGCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR CCA 90 bp ATGGGTCAGAAATCCGCTGAAGCCCTACCTGCCCCTCTTTGTAAAAAGAAGACAGCCATCCCTATCCACTaGACACCCCATAGCCATGGG +
Preference number: 4 (lower is better)
Translates to: MGQKSAEALPAPLCKKKTAIPIH*TPHSHG
Trigger: CCCATGGCTATGGGGTGTCCAGTGGATAGGGATGGC...TGTCTTCTTTTTACAAAGAGGGGCAGGTAGGGCTTCAGCGGATTTCTGACCCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR TCA 90 bp TGGGCAGGAAGGAACAACAGAACTTTCTCTGGTTTACTTAAGAGTAAATGTGACCCAGCGAGCGCTCCTTaGGCCGCTTCAGCAGCGAGT +
Preference number: 4 (lower is better)
Translates to: WAGRNNRTFSGLLKSKCDPASAP*AASAAS
Trigger: ACTCGCTGCTGAAGCGGCTCAAGGAGCGCTCGCTGG...GTCACATTTACTCTTAAGTAAACCAGAGAAAGTTCTGTTGTTCCTTCCTGCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp TCAAAAACCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTATCATTTAATGCAGTCCACCGATaGAGAGGTCGCAGCCCGCCC +
Preference number: 4 (lower is better)
Translates to: SKTIHQTQAFPPSSAVSFNAVHR*RGRSPP
Trigger: GGGCGGGCTGCGACCTCTGCATCGGTGGACTGCATT...AAATGATACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGGTTTTTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp ACTATAATGCGAATACTTTATTATCGAGTGACTGGTATTAGCTTTTTGTCTGGGCGCCGCGGAGCGCCGTaGAGACCGCGCACAGCCTGT +
Preference number: 4 (lower is better)
Translates to: TIMRILYYRVTGISFLSGRRGAP*RPRTAC
Trigger: ACAGGCTGTGCGCGGTCTGCACGGCGCTCCGCGGCG...CCCAGACAAAAAGCTAATACCAGTCACTCGATAATAAAGTATTCGCATTATAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp CTGGCGTCTCTCATTTCTCAAGGAAAGTTTGATTCAGGTATTCCTCCGGATGTACCAGGCAGAAGCCGCTaGCCTGAGGTAGGTCGTAGA +
Preference number: 4 (lower is better)
Translates to: LASLISQGKFDSGIPPDVPGRSR*PEVGRR
Trigger: TCTACGACCTACCTCAGGGCAGCGGCTTCTGCCTGG...TACATCCGGAGGAATACCTGAATCAAACTTTCCTTGAGAAATGAGAGACGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR GCA 90 bp CCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTATCATTTTCTTTATCGAAGCCGATCTTGCTaGGCGTTCGCCGCACCGACT +
Preference number: 4 (lower is better)
Translates to: PYTKPRLFHLALLYHFLYRSRSC*AFAAPT
Trigger: AGTCGGTGCGGCGAACGCGCAGCAAGATCGGCTTCG...ATAAAGAAAATGATACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp ACAGACCTTGGTCCTGGCCCTCGATGTCCCCAGTCCAACACCAACCTCTCATTTCAGTGTAAGACAATGTaGAATCGGACAGATCCAGTG +
Preference number: 4 (lower is better)
Translates to: TDLGPGPRCPQSNTNLSFQCKTM*NRTDPV
Trigger: CACTGGATCTGTCCGATTCCACATTGTCTTACACTG...AAATGAGAGGTTGGTGTTGGACTGGGGACATCGAGGGCCAGGACCAAGGTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000558937.1
CDS-3UTR CCA 90 bp TCAAAAACCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTATCATTTAGTGGCTCGGCTTGGTaGCGTCCGGAGACATGCTGG +
Preference number: 4 (lower is better)
Translates to: SKTIHQTQAFPPSSAVSFSGSAW*RPETCW
Trigger: CCAGCATGTCTCCGGACGCCACCAAGCCGAGCCACT...AAATGATACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGGTTTTTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp AGAAATCCGCTGAAGCCCTACCTGCCCCTCTTTGTAAAAAGAAGACAGTTTAAAACCAGTGGCTCGGCTTaGTGGCGTCCGGAGACATGC +
Preference number: 4 (lower is better)
Translates to: RNPLKPYLPLFVKRRQFKTSGSA*WRPETC
Trigger: GCATGTCTCCGGACGCCACCAAGCCGAGCCACTGGT...TTTAAACTGTCTTCTTTTTACAAAGAGGGGCAGGTAGGGCTTCAGCGGATTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp CCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTATCATTTTCTTTATTGCTCCAGGTTGAGCTaGCCCAGGCAGAAGCCGCTG +
Preference number: 4 (lower is better)
Translates to: PYTKPRLFHLALLYHFLYCSRLS*PRQKPL
Trigger: CAGCGGCTTCTGCCTGGGCCAGCTCAACCTGGAGCA...ATAAAGAAAATGATACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp ATGGGTCAGAAATCCGCTGAAGCCCTACCTGCCCCTCTTTGTAAAAAGAAGACAATCCCTGGATTTGCATaGACGAAAGGCCAACGCCGT +
Preference number: 4 (lower is better)
Translates to: MGQKSAEALPAPLCKKKTIPGFA*TKGQRR
Trigger: ACGGCGTTGGCCTTTCGTGCATGCAAATCCAGGGAT...TGTCTTCTTTTTACAAAGAGGGGCAGGTAGGGCTTCAGCGGATTTCTGACCCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp ACTATAATGCGAATACTTTATTATCGAGTGACTGGTATTAGCTTTTTGTCTGGGCCCACGCGCGTCCGGTaGTCCCAGTACGCCACGCTG +
Preference number: 4 (lower is better)
Translates to: TIMRILYYRVTGISFLSGPTRVR*SQYATL
Trigger: CAGCGTGGCGTACTGGGAGCACCGGACGCGCGTGGG...CCCAGACAAAAAGCTAATACCAGTCACTCGATAATAAAGTATTCGCATTATAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp AGTGGGGGACAAAACAGTGATGAAGAGCACAAACCCTGGAGACAAACAGCCCATGAGACAAACAGCCCATaGCTGTCCCAAGAGAATGCA +
Preference number: 4 (lower is better)
Translates to: SGGQNSDEEHKPWRQTAHETNSP*LSQENA
Trigger: TGCATTCTCTTGGGACAGCCATGGGCTGTTTGTCTC...ATGGGCTGTTTGTCTCCAGGGTTTGTGCTCTTCATCACTGTTTTGTCCCCCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000558937.1
CDS-3UTR GCA 90 bp ACTATAATGCGAATACTTTATTATCGAGTGACTGGTATTAGCTTTTTGTCTGGGCCACAGCGGCGGGGCTaGTCAACAACTCCAGCCCCC +
Preference number: 4 (lower is better)
Translates to: TIMRILYYRVTGISFLSGPQRRG*STTPAP
Trigger: GGGGGCTGGAGTTGTTGAGCAGCCCCGCCGCTGTGG...CCCAGACAAAAAGCTAATACCAGTCACTCGATAATAAAGTATTCGCATTATAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp AGAAATCCGCTGAAGCCCTACCTGCCCCTCTTTGTAAAAAGAAGACAGTTTAAAACGGTTTTGAGTTCCTaGTCCAGCAGCAGCAGCCGC +
Preference number: 4 (lower is better)
Translates to: RNPLKPYLPLFVKRRQFKTVLSS*SSSSSR
Trigger: GCGGCTGCTGCTGCTGGAGCAGGAACTCAAAACCGT...TTTAAACTGTCTTCTTTTTACAAAGAGGGGCAGGTAGGGCTTCAGCGGATTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp GGCCCTCGATGTCCCCAGTCCAACACCAACCTCTCATTTCTCAAGGAAAGTTTGTATGATTTTGGCGACTaGTACCATGGCATGGATGTG +
Preference number: 4 (lower is better)
Translates to: GPRCPQSNTNLSFLKESLYDFGD*YHGMDV
Trigger: CACATCCATGCCATGGTAGCAGTCGCCAAAATCATA...CAAACTTTCCTTGAGAAATGAGAGGTTGGTGTTGGACTGGGGACATCGAGGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000558937.1
CDS-3UTR CCA 90 bp TCTCTCATTTCTCAAGGAAAGTTTGATTCAGGTATTCCTCCGGATGTAGGGGTCATCGGACAGATCCAGTaGCTTGTACTCGTCGCGAGG +
Preference number: 4 (lower is better)
Translates to: SLISQGKFDSGIPPDVGVIGQIQ*LVLVAR
Trigger: CCTCGCGACGAGTACAAGCCACTGGATCTGTCCGAT...GACCCCTACATCCGGAGGAATACCTGAATCAAACTTTCCTTGAGAAATGAGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR CCA 90 bp CCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTATCATTTTCTTTATCGTCCGGAGACATGCTaGCGTCTGAGAATTCACCCG +
Preference number: 4 (lower is better)
Translates to: PYTKPRLFHLALLYHFLYRPETC*RLRIHP
Trigger: CGGGTGAATTCTCAGACGCCAGCATGTCTCCGGACG...ATAAAGAAAATGATACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp AATATCTCAAAAACCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTATGGCGTCCGGAGACATaGTGGCGTCTGAGAATTCAC +
Preference number: 4 (lower is better)
Translates to: NISKTIHQTQAFPPSSAVWRPET*WRLRIH
Trigger: GTGAATTCTCAGACGCCAGCATGTCTCCGGACGCCA...TACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGGTTTTTGAGATATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp ACTATAATGCGAATACTTTATTATCGAGTGACTGGTATTAGCTTTTTGTCTGGGACCGACTCGCTGCGCTaGTCCAGGTTGAGCTGGCCC +
Preference number: 4 (lower is better)
Translates to: TIMRILYYRVTGISFLSGTDSLR*SRLSWP
Trigger: GGGCCAGCTCAACCTGGAGCAGCGCAGCGAGTCGGT...CCCAGACAAAAAGCTAATACCAGTCACTCGATAATAAAGTATTCGCATTATAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp AGAAATCCGCTGAAGCCCTACCTGCCCCTCTTTGTAAAAAGAAGACAGTTTAAAGGAGCGAGTTTCTCCTaGACGCGGGTGTCAACACAT +
Preference number: 4 (lower is better)
Translates to: RNPLKPYLPLFVKRRQFKGASFS*TRVSTH
Trigger: ATGTGTTGACACCCGCGTCCAGGAGAAACTCGCTCC...TTTAAACTGTCTTCTTTTTACAAAGAGGGGCAGGTAGGGCTTCAGCGGATTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp AATATCTCAAAAACCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTAGGCGCTAGATGCACTTaGAGCGAGTTTCTCCTGGAC +
Preference number: 4 (lower is better)
Translates to: NISKTIHQTQAFPPSSAVGARCT*SEFLLD
Trigger: GTCCAGGAGAAACTCGCTCCAAGTGCATCTAGCGCC...TACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGGTTTTTGAGATATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp ATGGGTCAGAAATCCGCTGAAGCCCTACCTGCCCCTCTTTGTAAAAAGAAGACAACCCCTAAATGTGTCTaGAAAGCCCTGCCTTTACCT +
Preference number: 4 (lower is better)
Translates to: MGQKSAEALPAPLCKKKTTPKCV*KALPLP
Trigger: AGGTAAAGGCAGGGCTTTCCAGACACATTTAGGGGT...TGTCTTCTTTTTACAAAGAGGGGCAGGTAGGGCTTCAGCGGATTTCTGACCCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR TCA 90 bp ACCTTCCAGAACCTCAACTTTTCCCTTTCACAAAGTAGAAATAAACCATCTGCCACTATCTGGGGTTGTTaGGGAGGATCTCCAGCCAGC +
Preference number: 4 (lower is better)
Translates to: TFQNLNFSLSQSRNKPSATIWGC*GGSPAS
Trigger: GCTGGCTGGAGATCCTCCTCAACAACCCCAGATAGT...GGCAGATGGTTTATTTCTACTTTGTGAAAGGGAAAAGTTGAGGTTCTGGAAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp ACCTTCCAGAACCTCAACTTTTCCCTTTCACAAAGTAGAAATAAACCATCTGCCGTCCCAGGCGCTAGATaGACTTGGAGCGAGTTTCTC +
Preference number: 4 (lower is better)
Translates to: TFQNLNFSLSQSRNKPSAVPGAR*TWSEFL
Trigger: GAGAAACTCGCTCCAAGTGCATCTAGCGCCTGGGAC...GGCAGATGGTTTATTTCTACTTTGTGAAAGGGAAAAGTTGAGGTTCTGGAAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp TGGGCAGGAAGGAACAACAGAACTTTCTCTGGTTTACTTAAGAGTAAATGTGACCAGAAAGACCCCACATaGGCCGGCGAGCCTTCAAAA +
Preference number: 4 (lower is better)
Translates to: WAGRNNRTFSGLLKSKCDQKDPT*AGEPSK
Trigger: TTTTGAAGGCTCGCCGGCCCATGTGGGGTCTTTCTG...GTCACATTTACTCTTAAGTAAACCAGAGAAAGTTCTGTTGTTCCTTCCTGCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp ACCTTCCAGAACCTCAACTTTTCCCTTTCACAAAGTAGAAATAAACCATCTGCCATCGGACAGATCCAGTaGCTTGTACTCGTCGCGAGG +
Preference number: 4 (lower is better)
Translates to: TFQNLNFSLSQSRNKPSAIGQIQ*LVLVAR
Trigger: CCTCGCGACGAGTACAAGCCACTGGATCTGTCCGAT...GGCAGATGGTTTATTTCTACTTTGTGAAAGGGAAAAGTTGAGGTTCTGGAAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp CTCGAGATGGTTCTCTGCAAGGTAGCAGGTGGGCTCAAGGCCCATTTCAGTCTTTTCCTCTTAGTTATCTaGCCAAGGAGACTTTCTTTT +
Preference number: 4 (lower is better)
Translates to: LEMVLCKVAGGLKAHFSLFLLVI*PRRLSF
Trigger: AAAAGAAAGTCTCCTTGGCCAGATAACTAAGAGGAA...AAGACTGAAATGGGCCTTGAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR TCA 90 bp CCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTATCATTTTCTTTATCCGAGCGTTTGGACCTaGACATACGATATCCTTTGG +
Preference number: 4 (lower is better)
Translates to: PYTKPRLFHLALLYHFLYPSVWT*TYDILW
Trigger: CCAAAGGATATCGTATGTTCAGGTCCAAACGCTCGG...ATAAAGAAAATGATACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp TGGGCAGGAAGGAACAACAGAACTTTCTCTGGTTTACTTAAGAGTAAATGTGACAGCCTTCAAAAGTTGTaGGGCTGGTCCATGAGCACA +
Preference number: 4 (lower is better)
Translates to: WAGRNNRTFSGLLKSKCDSLQKL*GWSMST
Trigger: TGTGCTCATGGACCAGCCGCACAACTTTTGAAGGCT...GTCACATTTACTCTTAAGTAAACCAGAGAAAGTTCTGTTGTTCCTTCCTGCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp ACCTTCCAGAACCTCAACTTTTCCCTTTCACAAAGTAGAAATAAACCATCTGCCCCTCCTCCATCAGACTaGAAGAGCTTGTCCAGGATA +
Preference number: 4 (lower is better)
Translates to: TFQNLNFSLSQSRNKPSAPPPSD*KSLSRI
Trigger: TATCCTGGACAAGCTCTTCCAGTCTGATGGAGGAGG...GGCAGATGGTTTATTTCTACTTTGTGAAAGGGAAAAGTTGAGGTTCTGGAAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR TCA 90 bp ACTATAATGCGAATACTTTATTATCGAGTGACTGGTATTAGCTTTTTGTCTGGGGAAAGGCAGGCTTGTTaGTACCCCCAGCTCCCTTCT +
Preference number: 4 (lower is better)
Translates to: TIMRILYYRVTGISFLSGERQAC*YPQLPS
Trigger: AGAAGGGAGCTGGGGGTATCAACAAGCCTGCCTTTC...CCCAGACAAAAAGCTAATACCAGTCACTCGATAATAAAGTATTCGCATTATAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp ACCTTCCAGAACCTCAACTTTTCCCTTTCACAAAGTAGAAATAAACCATCTGCCCTAAATCCCTGGATTTaGATGCACGAAAGGCCAACG +
Preference number: 4 (lower is better)
Translates to: TFQNLNFSLSQSRNKPSALNPWI*MHERPT
Trigger: CGTTGGCCTTTCGTGCATGCAAATCCAGGGATTTAG...GGCAGATGGTTTATTTCTACTTTGTGAAAGGGAAAAGTTGAGGTTCTGGAAGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp AGAAATCCGCTGAAGCCCTACCTGCCCCTCTTTGTAAAAAGAAGACAGTTTAAACAGTGTAAGACAATGTaGAATCGGACAGATCCAGTG +
Preference number: 4 (lower is better)
Translates to: RNPLKPYLPLFVKRRQFKQCKTM*NRTDPV
Trigger: CACTGGATCTGTCCGATTCCACATTGTCTTACACTG...TTTAAACTGTCTTCTTTTTACAAAGAGGGGCAGGTAGGGCTTCAGCGGATTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp ACTATAATGCGAATACTTTATTATCGAGTGACTGGTATTAGCTTTTTGTCTGGGCTCATAACTCAAAGATaGGGGGCATGGACCTGGGCC +
Preference number: 4 (lower is better)
Translates to: TIMRILYYRVTGISFLSGLITQR*GAWTWA
Trigger: GGCCCAGGTCCATGCCCCCCATCTTTGAGTTATGAG...CCCAGACAAAAAGCTAATACCAGTCACTCGATAATAAAGTATTCGCATTATAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp ATGGGTCAGAAATCCGCTGAAGCCCTACCTGCCCCTCTTTGTAAAAAGAAGACAAAAATCCCAAAGAGCTaGTGGGAATCCTTAATTAAA +
Preference number: 4 (lower is better)
Translates to: MGQKSAEALPAPLCKKKTKIPKS*WESLIK
Trigger: TTTAATTAAGGATTCCCAGCAGCTCTTTGGGATTTT...TGTCTTCTTTTTACAAAGAGGGGCAGGTAGGGCTTCAGCGGATTTCTGACCCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp CCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTATCATTTTCTTTATCAAAACCTAAATCCCTaGATTTGCATGCACGAAAGG +
Preference number: 4 (lower is better)
Translates to: PYTKPRLFHLALLYHFLYQNLNP*ICMHER
Trigger: CCTTTCGTGCATGCAAATCCAGGGATTTAGGTTTTG...ATAAAGAAAATGATACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp ACCTTCCAGAACCTCAACTTTTCCCTTTCACAAAGTAGAAATAAACCATCTGCCCTTGTCCAGGATAAATaGCCAGTGTATTCTTTTCCC +
Preference number: 4 (lower is better)
Translates to: TFQNLNFSLSQSRNKPSALVQDK*PVYSFP
Trigger: GGGAAAAGAATACACTGGCCATTTATCCTGGACAAG...GGCAGATGGTTTATTTCTACTTTGTGAAAGGGAAAAGTTGAGGTTCTGGAAGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR TCA 90 bp AGAAATCCGCTGAAGCCCTACCTGCCCCTCTTTGTAAAAAGAAGACAGTTTAAAGTAAAACTTGAAAACTaGGGTCAAGTTTCAAGGTAC +
Preference number: 4 (lower is better)
Translates to: RNPLKPYLPLFVKRRQFKVKLEN*GQVSRY
Trigger: GTACCTTGAAACTTGACCTCAGTTTTCAAGTTTTAC...TTTAAACTGTCTTCTTTTTACAAAGAGGGGCAGGTAGGGCTTCAGCGGATTTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR TCA 90 bp TGGGCAGGAAGGAACAACAGAACTTTCTCTGGTTTACTTAAGAGTAAATGTGACTATTCTTCAGAAAGCTaGTCTAATGATATGGCTCTG +
Preference number: 4 (lower is better)
Translates to: WAGRNNRTFSGLLKSKCDYSSES*SNDMAL
Trigger: CAGAGCCATATCATTAGATCAGCTTTCTGAAGAATA...GTCACATTTACTCTTAAGTAAACCAGAGAAAGTTCTGTTGTTCCTTCCTGCCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR GCA 90 bp TGGGCAGGAAGGAACAACAGAACTTTCTCTGGTTTACTTAAGAGTAAATGTGACAATTATAAGCCAAAGTaGGTCTTTCTTGTTTTGTCC +
Preference number: 4 (lower is better)
Translates to: WAGRNNRTFSGLLKSKCDNYKPK*VFLVLS
Trigger: GGACAAAACAAGAAAGACGCACTTTGGCTTATAATT...GTCACATTTACTCTTAAGTAAACCAGAGAAAGTTCTGTTGTTCCTTCCTGCCCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CCA 90 bp ACCTTCCAGAACCTCAACTTTTCCCTTTCACAAAGTAGAAATAAACCATCTGCCATCCCAAAGAGCTGCTaGGAATCCTTAATTAAAAAT +
Preference number: 4 (lower is better)
Translates to: TFQNLNFSLSQSRNKPSAIPKSC*ESLIKN
Trigger: ATTTTTAATTAAGGATTCCCAGCAGCTCTTTGGGAT...GGCAGATGGTTTATTTCTACTTTGTGAAAGGGAAAAGTTGAGGTTCTGGAAGGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS GCA 90 bp CTGCGCGGGTCGCAGCCCCACATGAAGCTCCGCCGCGGAGCGCCGTaGAGACCGCGCACAGCCTGTCGTCGAAGGGGCGCCGCAGGGCGA +
Preference number: 5 (lower is better)
Translates to: LRGSQPHMKLRRGAP*RPRTACRRRGAAGR
Trigger: TCGCCCTGCGGCGCCCCTTCGACGACAGGCTGTGCGCGGTCTGCACGGCGCTCCGCGGCGGAGCTTCATGTGGGGCTGCGACCCGCGCAG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288840.10
ENST00000612349.1
CDS GCA 90 bp GGCTACCGGGCGGACTTCGGAGCGGCCGCAGCCTCCGCCCTCTCTTaGCCGCGGGGCCGGCTCAGCTCGGCTGCCCAAGCTCCCATCCTC +
Preference number: 5 (lower is better)
Translates to: GYRADFGAAAASALS*PRGRLSSAAQAPIL
Trigger: GAGGATGGGAGCTTGGGCAGCCGAGCTGAGCCGGCCCCGCGGGCAAGAGAGGGCGGAGGCTGCGGCCGCTCCGAAGTCCGCCCGGTAGCC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000288840.10
ENST00000557916.5
ENST00000612349.1
CDS TCA 90 bp ACCGCGCACAGCCTGTCGTCGAAGGGGCGCCGCAGGGCGACAACATaGGGGAGCTCGCCGAGGCGGGACGGCCGGGAACACGCGCACGCC +
Preference number: 5 (lower is better)
Translates to: TAHSLSSKGRRRATT*GSSPRRDGREHAHA
Trigger: GGCGTGCGCGTGTTCCCGGCCGTCCCGCCTCGGCGAGCTCCCTCATGTTGTCGCCCTGCGGCGCCCCTTCGACGACAGGCTGTGCGCGGT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS CCA 90 bp ACACGCGCACGCCGAGCCGCAGTCCGCGCGCGGCCAGCGGCTACATaGACCACAGCGGCGGGGCTGCTCAACAACTCCAGCCCCCGCGCT +
Preference number: 5 (lower is better)
Translates to: TRARRAAVRARPAAT*TTAAGLLNNSSPRA
Trigger: AGCGCGGGGGCTGGAGTTGTTGAGCAGCCCCGCCGCTGTGGTCCATGTAGCCGCTGGCCGCGCGCGGACTGCGGCTCGGCGTGCGCGTGT
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS CCA 90 bp GGGTTGCAGCACACGGTAGGGCCGTCGGCGGCGGCGGCGAAGCTGTaGCAGCCGCACAGGGGCTTCAGCTCCACGGCGTGCTGCAGGTCG +
Preference number: 5 (lower is better)
Translates to: GLQHTVGPSAAAAKL*QPHRGFSSTACCRS
Trigger: CGACCTGCAGCACGCCGTGGAGCTGAAGCCCCTGTGCGGCTGCCACAGCTTCGCCGCCGCCGCCGACGGCCCTACCGTGTGCTGCAACCC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000288840.10
ENST00000557916.5
ENST00000612349.1
CDS GCA 90 bp GCGAAGCTGTGGCAGCCGCACAGGGGCTTCAGCTCCACGGCGTGCTaGAGGTCGGGCCAGCGAAAGAGGCGGCCGAGCAGCAGCTGCGGC +
Preference number: 5 (lower is better)
Translates to: AKLWQPHRGFSSTAC*RSGQRKRRPSSSCG
Trigger: GCCGCAGCTGCTGCTCGGCCGCCTCTTTCGCTGGCCCGACCTGCAGCACGCCGTGGAGCTGAAGCCCCTGTGCGGCTGCCACAGCTTCGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000288840.10
ENST00000557916.5
ENST00000612349.1
CDS GCA 90 bp GCGGCGAAGCTGTGGCAGCCGCACAGGGGCTTCAGCTCCACGGCGTaGTGCAGGTCGGGCCAGCGAAAGAGGCGGCCGAGCAGCAGCTGC +
Preference number: 5 (lower is better)
Translates to: AAKLWQPHRGFSSTA*CRSGQRKRRPSSSC
Trigger: GCAGCTGCTGCTCGGCCGCCTCTTTCGCTGGCCCGACCTGCAGCACGCCGTGGAGCTGAAGCCCCTGTGCGGCTGCCACAGCTTCGCCGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000288840.10
ENST00000557916.5
ENST00000612349.1
CDS-3UTR CAA 90 bp GGCTGTGTCTCTGGGCATCGGCCCCTCTCGAGGCCGGCAGGTGGCGGTGGCCGCCACCAGTGGCTCGGCTaGGTGGCGTCCGGAGACATG +
Preference number: 5 (lower is better)
Translates to: GCVSGHRPLSRPAGGGGRHQWLG*VASGDM
Trigger: CATGTCTCCGGACGCCACCAAGCCGAGCCACTGGTG...GCGGCCACCGCCACCTGCCGGCCTCGAGAGGGGCCGATGCCCAGAGACACAGCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS GCA 90 bp TGGTGGCTCCCACGCTCCAAGGGCACCCGGGGGAGCACCCGCAGCTaGGCCGACCCGCAGTGTCACAGAGAGAAGGGCACGGAAGGGGAT +
Preference number: 5 (lower is better)
Translates to: WWLPRSKGTRGSTRS*ADPQCHREKGTEGD
Trigger: ATCCCCTTCCGTGCCCTTCTCTCTGTGACACTGCGGGTCGGCGCAGCTGCGGGTGCTCCCCCGGGTGCCCTTGGAGCGTGGGAGCCACCA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS-3UTR CAA 90 bp GTAGGCCCACACGCCGTCGGGCTCCTTGCTGAGCAGGATGCCGAAGCCGATCTTAGCCTCCGCCCTCTCTaGCCCGCGGGGCCGGCTCAG +
Preference number: 5 (lower is better)
Translates to: VGPHAVGLLAEQDAEADLSLRPL*PAGPAQ
Trigger: CTGAGCCGGCCCCGCGGGCAAGAGAGGGCGGAGGCT...AAGATCGGCTTCGGCATCCTGCTCAGCAAGGAGCCCGACGGCGTGTGGGCCTAC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000557916.5
CDS-3UTR CAA 90 bp GCGCGTCCGGTGCTCCCAGTACGCCACGCTGCACCAGTGGCTCGGCTTGGTGGCATGCCGAAGCCGATCTaGCTGCGCGTTCGCCGCACC +
Preference number: 5 (lower is better)
Translates to: ARPVLPVRHAAPVARLGGMPKPI*LRVRRT
Trigger: GGTGCGGCGAACGCGCAGCAAGATCGGCTTCGGCAT...GCCACCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCGC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR CAA 90 bp CGGCCTGGTCGTACACCGCATAGAGGCGGCCCACGCGCGTCCGGTGCTCCCAGTATGCCGAAGCCGATCTaGCTGCGCGTTCGCCGCACC +
Preference number: 5 (lower is better)
Translates to: RPGRTPHRGGPRASGAPSMPKPI*LRVRRT
Trigger: GGTGCGGCGAACGCGCAGCAAGATCGGCTTCGGCAT...ACTGGGAGCACCGGACGCGCGTGGGCCGCCTCTATGCGGTGTACGACCAGGCCG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS GCA 90 bp AGGCGCAGTCTCCTTATCAGGACGCGCACCGCTGAGCCCCAGCTATaGGCCCGCCCAGTTACGGGAGCCAAGCTGGCGGCCAAGCGGTGG +
Preference number: 5 (lower is better)
Translates to: RRSLLIRTRTAEPQL*ARPVTGAKLAAKRW
Trigger: CCACCGCTTGGCCGCCAGCTTGGCTCCCGTAACTGGGCGGGCGCATAGCTGGGGCTCAGCGGTGCGCGTCCTGATAAGGAGACTGCGCCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CCA 90 bp CGGCCCACGCGCGTCCGGTGCTCCCAGTACGCCACGCTGCACCAGTaGCTCGGCTTGGTGGCGTCCGGAGACATGCTGGCGTCTGAGAAT +
Preference number: 5 (lower is better)
Translates to: RPTRVRCSQYATLHQ*LGLVASGDMLASEN
Trigger: ATTCTCAGACGCCAGCATGTCTCCGGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCGCGTGGGCCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CAA 90 bp CGAAGATGGGGTGCTCGCCGCGGTTGTAGGCCCACACGCCGTCGGGCTCCTTGCTCCAGCGAGCGCTCCTaGAGCCGCTTCAGCAGCGAG +
Preference number: 5 (lower is better)
Translates to: RRWGARRGCRPTRRRAPCSSERS*SRFSSE
Trigger: CTCGCTGCTGAAGCGGCTCAAGGAGCGCTCGCTGGA...GCAAGGAGCCCGACGGCGTGTGGGCCTACAACCGCGGCGAGCACCCCATCTTCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000557916.5
CDS-3UTR CAA 90 bp CGAAGATGGGGTGCTCGCCGCGGTTGTAGGCCCACACGCCGTCGGGCTCCTTGCCACCAGTGGCTCGGCTaGGTGGCGTCCGGAGACATG +
Preference number: 5 (lower is better)
Translates to: RRWGARRGCRPTRRRAPCHQWLG*VASGDM
Trigger: CATGTCTCCGGACGCCACCAAGCCGAGCCACTGGTG...GCAAGGAGCCCGACGGCGTGTGGGCCTACAACCGCGGCGAGCACCCCATCTTCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR CAA 90 bp CCACGCGCGTCCGGTGCTCCCAGTACGCCACGCTGCACCAGTGGCTCGGCTTGGTCCAGCGTCGGGGAGTaGACGAAGATGGGGTGCTCG +
Preference number: 5 (lower is better)
Translates to: PRASGAPSTPRCTSGSAWSSVGE*TKMGCS
Trigger: CGAGCACCCCATCTTCGTCAACTCCCCGACGCTGGA...CCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCGCGTGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS TCA 90 bp CCAGAGCCCTGGAAGGCGCAGTCTCCTTATCAGGACGCGCACCGCTaGGCCCCAGCTATGCGCCCGCCCAGTTACGGGAGCCAAGCTGGC +
Preference number: 5 (lower is better)
Translates to: PEPWKAQSPYQDAHR*APAMRPPSYGSQAG
Trigger: GCCAGCTTGGCTCCCGTAACTGGGCGGGCGCATAGCTGGGGCTCAGCGGTGCGCGTCCTGATAAGGAGACTGCGCCTTCCAGGGCTCTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS-3UTR CAA 90 bp AGGATGCCGAAGCCGATCTTGCTGCGCGTTCGCCGCACCGACTCGCTGCGCTGCCACCAGTGGCTCGGCTaGGTGGCGTCCGGAGACATG +
Preference number: 5 (lower is better)
Translates to: RMPKPILLRVRRTDSLRCHQWLG*VASGDM
Trigger: CATGTCTCCGGACGCCACCAAGCCGAGCCACTGGTG...GCAGCGCAGCGAGTCGGTGCGGCGAACGCGCAGCAAGATCGGCTTCGGCATCCT
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR CAA 90 bp AGGATGCCGAAGCCGATCTTGCTGCGCGTTCGCCGCACCGACTCGCTGCGCTGCACGCCGTCGGGCTCCTaGCTGAGCAGGATGCCGAAG +
Preference number: 5 (lower is better)
Translates to: RMPKPILLRVRRTDSLRCTPSGS*LSRMPK
Trigger: CTTCGGCATCCTGCTCAGCAAGGAGCCCGACGGCGT...GCAGCGCAGCGAGTCGGTGCGGCGAACGCGCAGCAAGATCGGCTTCGGCATCCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS TCA 90 bp CCCAGGAAGGGGTCTTCTGTCACCGGGGCTCCCTGCAGTGGTCGGTaGAGGTGCGGAGGTGACTGCTGCCAGGTGGGAGTCCCTCAGTGC +
Preference number: 5 (lower is better)
Translates to: PRKGSSVTGAPCSGR*RCGGDCCQVGVPQC
Trigger: GCACTGAGGGACTCCCACCTGGCAGCAGTCACCTCCGCACCTTCACCGACCACTGCAGGGAGCCCCGGTGACAGAAGACCCCTTCCTGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CCA 90 bp GCGTCCGGTGCTCCCAGTACGCCACGCTGCACCAGTGGCTCGGCTTaGTGGCGTCCGGAGACATGCTGGCGTCTGAGAATTCACCCGGAG +
Preference number: 5 (lower is better)
Translates to: ASGAPSTPRCTSGSA*WRPETCWRLRIHPE
Trigger: CTCCGGGTGAATTCTCAGACGCCAGCATGTCTCCGGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGCACCGGACGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CAA 90 bp CGCGCGTCCGGTGCTCCCAGTACGCCACGCTGCACCAGTGGCTCGGCTTGGTGGGACAGATCCAGTGGCTaGTACTCGTCGCGAGGAGAC +
Preference number: 5 (lower is better)
Translates to: RASGAPSTPRCTSGSAWWDRSSG*YSSRGD
Trigger: GTCTCCTCGCGACGAGTACAAGCCACTGGATCTGTC...CCACCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCGCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR CAA 90 bp CCACGCTGCACCAGTGGCTCGGCTTGGTGGCGTCCGGAGACATGCTGGCGTCTCTCCAGCGTCGGGGAGTaGACGAAGATGGGGTGCTCG +
Preference number: 5 (lower is better)
Translates to: PRCTSGSAWWRPETCWRLSSVGE*TKMGCS
Trigger: CGAGCACCCCATCTTCGTCAACTCCCCGACGCTGGA...GAGACGCCAGCATGTCTCCGGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS GCA 90 bp TCCTTGAGCCGCTTCAGCAGCGAGTACGTGACGGTTTTGAGTTCCTaGTCCAGCAGCAGCAGCCGCGAGCGCGCTTCGCGACTCCGCCCG +
Preference number: 5 (lower is better)
Translates to: SLSRFSSEYVTVLSS*SSSSSRERASRLRP
Trigger: CGGGCGGAGTCGCGAAGCGCGCTCGCGGCTGCTGCTGCTGGAGCAGGAACTCAAAACCGTCACGTACTCGCTGCTGAAGCGGCTCAAGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000288840.10
ENST00000557916.5
ENST00000612349.1
CDS-3UTR CAA 90 bp CGCATAGAGGCGGCCCACGCGCGTCCGGTGCTCCCAGTACGCCACGCTGCACCAGCAGTGATGAGGGAGTaGGTAGCCTCCGTTTCAGTG +
Preference number: 5 (lower is better)
Translates to: RIEAAHARPVLPVRHAAPAVMRE*VASVSV
Trigger: CACTGAAACGGAGGCTACCAACTCCCTCATCACTGC...TGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCGCGTGGGCCGCCTCTATGCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR CAA 90 bp GTTGTAGGCCCACACGCCGTCGGGCTCCTTGCTGAGCAGGATGCCGAAGCCGATACGCCGTCGGGCTCCTaGCTGAGCAGGATGCCGAAG +
Preference number: 5 (lower is better)
Translates to: VVGPHAVGLLAEQDAEADTPSGS*LSRMPK
Trigger: CTTCGGCATCCTGCTCAGCAAGGAGCCCGACGGCGT...ATCGGCTTCGGCATCCTGCTCAGCAAGGAGCCCGACGGCGTGTGGGCCTACAAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS GCA 90 bp TTCCAGTGTACTTTGCTCGCTAGCGGTGTGCCTGCGCTATGTGTGTaGGCGCATCTGTCTGCCCGGTGCCCCGGCCCTCTTCCCAGAGCC +
Preference number: 5 (lower is better)
Translates to: FQCTLLASGVPALCV*AHLSARCPGPLPRA
Trigger: GGCTCTGGGAAGAGGGCCGGGGCACCGGGCAGACAGATGCGCGCACACACATAGCGCAGGCACACCGCTAGCGAGCAAAGTACACTGGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS GCA 90 bp GTCCCTCAGTGCCGGTGTTCCAGTGTACTTTGCTCGCTAGCGGTGTaGCTGCGCTATGTGTGTGCGCGCATCTGTCTGCCCGGTGCCCCG +
Preference number: 5 (lower is better)
Translates to: VPQCRCSSVLCSLAV*LRYVCARICLPGAP
Trigger: CGGGGCACCGGGCAGACAGATGCGCGCACACACATAGCGCAGGCACACCGCTAGCGAGCAAAGTACACTGGAACACCGGCACTGAGGGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS-3UTR CAA 90 bp CGAAGATGGGGTGCTCGCCGCGGTTGTAGGCCCACACGCCGTCGGGCTCCTTGCGCAGTGATGAGGGAGTaGGTAGCCTCCGTTTCAGTG +
Preference number: 5 (lower is better)
Translates to: RRWGARRGCRPTRRRAPCAVMRE*VASVSV
Trigger: CACTGAAACGGAGGCTACCAACTCCCTCATCACTGC...GCAAGGAGCCCGACGGCGTGTGGGCCTACAACCGCGGCGAGCACCCCATCTTCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS CCA 90 bp CCCAGGGCTCCCCCAGCTCTCAGGCCAGGGGCAAGAGGATCAACCTaGCACATACTGGAAACTCTTCCCGGACCATCGGTCCTCCCAGCT +
Preference number: 5 (lower is better)
Translates to: PRAPPALRPGARGST*HILETLPGPSVLPA
Trigger: AGCTGGGAGGACCGATGGTCCGGGAAGAGTTTCCAGTATGTGCCAGGTTGATCCTCTTGCCCCTGGCCTGAGAGCTGGGGGAGCCCTGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS GCA 90 bp CGCAGAAAAGGAGCTCCTGGCACTTTAAGGCCGCCTGAGCCTAATTaGCCAGATTCCCCTGGCAGCCAGATAAACAGCGCGGCCGGCTGG +
Preference number: 5 (lower is better)
Translates to: RRKGAPGTLRPPEPN*PDSPGSQINSAAGW
Trigger: CCAGCCGGCCGCGCTGTTTATCTGGCTGCCAGGGGAATCTGGGCAATTAGGCTCAGGCGGCCTTAAAGTGCCAGGAGCTCCTTTTCTGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS-3UTR CAA 90 bp GTTGTAGGCCCACACGCCGTCGGGCTCCTTGCTGAGCAGGATGCCGAAGCCGATGAGTACGTGACGGTTTaGAGTTCCTGCTCCAGCAGC +
Preference number: 5 (lower is better)
Translates to: VVGPHAVGLLAEQDAEADEYVTV*SSCSSS
Trigger: GCTGCTGGAGCAGGAACTCAAAACCGTCACGTACTC...ATCGGCTTCGGCATCCTGCTCAGCAAGGAGCCCGACGGCGTGTGGGCCTACAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000557916.5
CDS TCA 90 bp GCCTGTCTGCACCTGAGCACCAGGGCCTGGCCAGGTAAGCAAGGCTaGGGGTGGGGCGTGTGCAGGAAATCCCAAGAGGAGAACAAAGAA +
Preference number: 5 (lower is better)
Translates to: ACLHLSTRAWPGKQG*GWGVCRKSQEENKE
Trigger: TTCTTTGTTCTCCTCTTGGGATTTCCTGCACACGCCCCACCCTCAGCCTTGCTTACCTGGCCAGGCCCTGGTGCTCAGGTGCAGACAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CCA 90 bp TCCGTCCACATAGGCACCCACCGAGCTCAGCGAACTGGCTTTTCCTaGGACAGAAAGACACCCAAGGGGGAGGCAGAGTTGGGCCTGACT +
Preference number: 5 (lower is better)
Translates to: SVHIGTHRAQRTGFS*DRKTPKGEAELGLT
Trigger: AGTCAGGCCCAACTCTGCCTCCCCCTTGGGTGTCTTTCTGTCCCAGGAAAAGCCAGTTCGCTGAGCTCGGTGGGTGCCTATGTGGACGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS-3UTR CAA 90 bp CGCATAGAGGCGGCCCACGCGCGTCCGGTGCTCCCAGTACGCCACGCTGCACCATTTCTCAAGGAAAGTTaGATTCAGGTATTCCTCCGG +
Preference number: 5 (lower is better)
Translates to: RIEAAHARPVLPVRHAAPFLKES*IQVFLR
Trigger: CCGGAGGAATACCTGAATCAAACTTTCCTTGAGAAA...TGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCGCGTGGGCCGCCTCTATGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS GCA 90 bp CCAAAGAGCTGCTGGGAATCCTTAATTAAAAATGCAGTCCACCGATaGAGAGGTCGCAGCCCGCCCCACGCTGCCCTCGGACGCTTCGTG +
Preference number: 5 (lower is better)
Translates to: PKSCWESLIKNAVHR*RGRSPPHAALGRFV
Trigger: CACGAAGCGTCCGAGGGCAGCGTGGGGCGGGCTGCGACCTCTGCATCGGTGGACTGCATTTTTAATTAAGGATTCCCAGCAGCTCTTTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS GCA 90 bp AATCTCCTCCAACTTCCTGCAGAAGAGCAGTCAGCCAGGGGCCAGTaGACCAGAAGGTTCAGCTCAGCCCAGGCATGCCTCTGGTTAGCC +
Preference number: 5 (lower is better)
Translates to: NLLQLPAEEQSARGQ*TRRFSSAQACLWLA
Trigger: GGCTAACCAGAGGCATGCCTGGGCTGAGCTGAACCTTCTGGTGCACTGGCCCCTGGCTGACTGCTCTTCTGCAGGAAGTTGGAGGAGATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS-3UTR CAA 90 bp CTCGAGATGGTTCTCTGCAAGGTAGCAGGTGGGCTCAAGGCCCATTTCAGTCTTACGCCGTCGGGCTCCTaGCTGAGCAGGATGCCGAAG +
Preference number: 5 (lower is better)
Translates to: LEMVLCKVAGGLKAHFSLTPSGS*LSRMPK
Trigger: CTTCGGCATCCTGCTCAGCAAGGAGCCCGACGGCGT...AAGACTGAAATGGGCCTTGAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS CCA 90 bp GGAGGAGACTTGGGGTGCTGCAGCCCTGGCAACAGCGCCTCCTTCTaGGAGAAGGAGGGGAATCAAGTCCCAAGGCTTAGTCCAGATTTA +
Preference number: 5 (lower is better)
Translates to: GGDLGCCSPGNSASF*EKEGNQVPRLSPDL
Trigger: TAAATCTGGACTAAGCCTTGGGACTTGATTCCCCTCCTTCTCCCAGAAGGAGGCGCTGTTGCCAGGGCTGCAGCACCCCAAGTCTCCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS-3UTR CAA 90 bp CTCGAGATGGTTCTCTGCAAGGTAGCAGGTGGGCTCAAGGCCCATTTCAGTCTTTCCAGCGTCGGGGAGTaGACGAAGATGGGGTGCTCG +
Preference number: 5 (lower is better)
Translates to: LEMVLCKVAGGLKAHFSLSSVGE*TKMGCS
Trigger: CGAGCACCCCATCTTCGTCAACTCCCCGACGCTGGA...AAGACTGAAATGGGCCTTGAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CAA 90 bp GGCCCTCGATGTCCCCAGTCCAACACCAACCTCTCATTTCTCAAGGAAAGTTTGAGGGCCCCACAGACCTaGGTCCTGGCCCTCGATGTC +
Preference number: 5 (lower is better)
Translates to: GPRCPQSNTNLSFLKESLRAPQT*VLALDV
Trigger: GACATCGAGGGCCAGGACCAAGGTCTGTGGGGCCCT...CAAACTTTCCTTGAGAAATGAGAGGTTGGTGTTGGACTGGGGACATCGAGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000558937.1
CDS CCA 90 bp TCTCCTCTGACCCATCCTCCAAGGTCCGGCTCCAGGTTGGAGCTGTaGAGCTCCTGCATGCCATCCTATTACATACACACCCACAGCCTT +
Preference number: 5 (lower is better)
Translates to: SPLTHPPRSGSRLEL*SSCMPSYYIHTHSL
Trigger: AAGGCTGTGGGTGTGTATGTAATAGGATGGCATGCAGGAGCTCCACAGCTCCAACCTGGAGCCGGACCTTGGAGGATGGGTCAGAGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CCA 90 bp TCTCCACATTTCCGTCCACATAGGCACCCACCGAGCTCAGCGAACTaGCTTTTCCTGGGACAGAAAGACACCCAAGGGGGAGGCAGAGTT +
Preference number: 5 (lower is better)
Translates to: SPHFRPHRHPPSSAN*LFLGQKDTQGGGRV
Trigger: AACTCTGCCTCCCCCTTGGGTGTCTTTCTGTCCCAGGAAAAGCCAGTTCGCTGAGCTCGGTGGGTGCCTATGTGGACGGAAATGTGGAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS-3UTR CAA 90 bp CATGCCACCAGGCCACCATGCCACCAGCCATGCTCCCAAAGGGCCCCACAGACCTTTCTCAAGGAAAGTTaGATTCAGGTATTCCTCCGG +
Preference number: 5 (lower is better)
Translates to: HATRPPCHQPCSQRAPQTFLKES*IQVFLR
Trigger: CCGGAGGAATACCTGAATCAAACTTTCCTTGAGAAA...GGTCTGTGGGGCCCTTTGGGAGCATGGCTGGTGGCATGGTGGCCTGGTGGCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000558937.1
CDS GCA 90 bp ACCCATCCTCCAAGGTCCGGCTCCAGGTTGGAGCTGTGGAGCTCCTaGATGCCATCCTATTACATACACACCCACAGCCTTCTGGTAGTT +
Preference number: 5 (lower is better)
Translates to: THPPRSGSRLELWSS*MPSYYIHTHSLLVV
Trigger: AACTACCAGAAGGCTGTGGGTGTGTATGTAATAGGATGGCATGCAGGAGCTCCACAGCTCCAACCTGGAGCCGGACCTTGGAGGATGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS-3UTR CAA 90 bp CTCGAGATGGTTCTCTGCAAGGTAGCAGGTGGGCTCAAGGCCCATTTCAGTCTTATCCGAAAGGCAGGCTaGTTGATACCCCCAGCTCCC +
Preference number: 5 (lower is better)
Translates to: LEMVLCKVAGGLKAHFSLIRKAG*LIPPAP
Trigger: GGGAGCTGGGGGTATCAACAAGCCTGCCTTTCGGAT...AAGACTGAAATGGGCCTTGAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CAA 90 bp CTCGAGATGGTTCTCTGCAAGGTAGCAGGTGGGCTCAAGGCCCATTTCAGTCTTGACAGATCCAGTGGCTaGTACTCGTCGCGAGGAGAC +
Preference number: 5 (lower is better)
Translates to: LEMVLCKVAGGLKAHFSLDRSSG*YSSRGD
Trigger: GTCTCCTCGCGACGAGTACAAGCCACTGGATCTGTC...AAGACTGAAATGGGCCTTGAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS CCA 90 bp TCAAGCTGCACGTTACTAGCTGGGCAGAGCCTGGGACCAGGTCCATaGTCAAGAACTGTTCTACTGCAGCTTGCCAGGTATCTCTTGACC +
Preference number: 5 (lower is better)
Translates to: SSCTLLAGQSLGPGP*SRTVLLQLARYLLT
Trigger: GGTCAAGAGATACCTGGCAAGCTGCAGTAGAACAGTTCTTGACCATGGACCTGGTCCCAGGCTCTGCCCAGCTAGTAACGTGCAGCTTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS-3UTR CAA 90 bp AACAGCCCATGGCTGTCCCAAGAGAATGCATATAAAGCGGCCAAGTGGAGTGCCGCAGTGATGAGGGAGTaGGTAGCCTCCGTTTCAGTG +
Preference number: 5 (lower is better)
Translates to: NSPWLSQENAYKAAKWSAAVMRE*VASVSV
Trigger: CACTGAAACGGAGGCTACCAACTCCCTCATCACTGC...GGCACTCCACTTGGCCGCTTTATATGCATTCTCTTGGGACAGCCATGGGCTGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000558937.1
CDS-3UTR CAA 90 bp CTCGAGATGGTTCTCTGCAAGGTAGCAGGTGGGCTCAAGGCCCATTTCAGTCTTACCAGCCCCGAGCGTTaGGACCTGAACATACGATAT +
Preference number: 5 (lower is better)
Translates to: LEMVLCKVAGGLKAHFSLTSPER*DLNIRY
Trigger: ATATCGTATGTTCAGGTCCAAACGCTCGGGGCTGGT...AAGACTGAAATGGGCCTTGAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CAA 90 bp ACCTTCCAGAACCTCAACTTTTCCCTTTCACAAAGTAGAAATAAACCATCTGCCCAGGGCCCCCAGCCCTaGGCGAAGCTGATGCGGACG +
Preference number: 5 (lower is better)
Translates to: TFQNLNFSLSQSRNKPSAQGPQP*AKLMRT
Trigger: CGTCCGCATCAGCTTCGCCAAGGGCTGGGGGCCCTG...GGCAGATGGTTTATTTCTACTTTGTGAAAGGGAAAAGTTGAGGTTCTGGAAGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS GCA 90 bp GAGCCTGGGACCAGGTCCATGGTCAAGAACTGTTCTACTGCAGCTTaGCAGGTATCTCTTGACCTGTACCTCTCCAAACCTACCAAATGC +
Preference number: 5 (lower is better)
Translates to: EPGTRSMVKNCSTAA*QVSLDLYLSKPTKC
Trigger: GCATTTGGTAGGTTTGGAGAGGTACAGGTCAAGAGATACCTGGCAAGCTGCAGTAGAACAGTTCTTGACCATGGACCTGGTCCCAGGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CCA 90 bp GAGAAGGGAGGTAACTCATCCAAAGTCAAGCTGCACGTTACTAGCTaGGCAGAGCCTGGGACCAGGTCCATGGTCAAGAACTGTTCTACT +
Preference number: 5 (lower is better)
Translates to: EKGGNSSKVKLHVTS*AEPGTRSMVKNCST
Trigger: AGTAGAACAGTTCTTGACCATGGACCTGGTCCCAGGCTCTGCCCAGCTAGTAACGTGCAGCTTGACTTTGGATGAGTTACCTCCCTTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS-3UTR CAA 90 bp CTAAAAAGATCTACGGGGCTCGAGATGGTTCTCTGCAAGGTAGCAGGTGGGCTCCCTAAATCCCTGGATTaGCATGCACGAAAGGCCAAC +
Preference number: 5 (lower is better)
Translates to: LKRSTGLEMVLCKVAGGLPKSLD*HARKAN
Trigger: GTTGGCCTTTCGTGCATGCAAATCCAGGGATTTAGG...GAGCCCACCTGCTACCTTGCAGAGAACCATCTCGAGCCCCGTAGATCTTTTTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CAA 90 bp ACTATAATGCGAATACTTTATTATCGAGTGACTGGTATTAGCTTTTTGTCTGGGAGCCTCCGCCCTCTCTaGCCCGCGGGGCCGGCTCAG +
Preference number: 5 (lower is better)
Translates to: TIMRILYYRVTGISFLSGSLRPL*PAGPAQ
Trigger: CTGAGCCGGCCCCGCGGGCAAGAGAGGGCGGAGGCT...CCCAGACAAAAAGCTAATACCAGTCACTCGATAATAAAGTATTCGCATTATAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CAA 90 bp CGTCCGGAGACATGCTGGCGTCTCTCATTTCTCAAGGAAAGTTTGATTCAGGTAGACAGATCCAGTGGCTaGTACTCGTCGCGAGGAGAC +
Preference number: 5 (lower is better)
Translates to: RPETCWRLSFLKESLIQVDRSSG*YSSRGD
Trigger: GTCTCCTCGCGACGAGTACAAGCCACTGGATCTGTC...TACCTGAATCAAACTTTCCTTGAGAAATGAGAGACGCCAGCATGTCTCCGGACG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR CAA 90 bp TCAAAAACCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTATCATTTATGCCGAAGCCGATCTaGCTGCGCGTTCGCCGCACC +
Preference number: 5 (lower is better)
Translates to: SKTIHQTQAFPPSSAVSFMPKPI*LRVRRT
Trigger: GGTGCGGCGAACGCGCAGCAAGATCGGCTTCGGCAT...AAATGATACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGGTTTTTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS CCA 90 bp AAGCACAGTGTGGGTAAGGGCACGTGCATACAAATGCTAGAAGCCTaGGCACAGACTGGGGTAGATTCCGGAATTGAGGTAGGAGGAAAT +
Preference number: 5 (lower is better)
Translates to: KHSVGKGTCIQMLEA*AQTGVDSGIEVGGN
Trigger: ATTTCCTCCTACCTCAATTCCGGAATCTACCCCAGTCTGTGCCCAGGCTTCTAGCATTTGTATGCACGTGCCCTTACCCACACTGTGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS-3UTR CAA 90 bp ACCTTCCAGAACCTCAACTTTTCCCTTTCACAAAGTAGAAATAAACCATCTGCCTCCAGCGAGCGCTCCTaGAGCCGCTTCAGCAGCGAG +
Preference number: 5 (lower is better)
Translates to: TFQNLNFSLSQSRNKPSASSERS*SRFSSE
Trigger: CTCGCTGCTGAAGCGGCTCAAGGAGCGCTCGCTGGA...GGCAGATGGTTTATTTCTACTTTGTGAAAGGGAAAAGTTGAGGTTCTGGAAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS TCA 90 bp AGATGCACTTGGAGCGAGTTTCTCCTGGACGCGGGTGTCAACACATaGGTGGAAGCTGTAAAAATCCCAAAGAGCTGCTGGGAATCCTTA +
Preference number: 5 (lower is better)
Translates to: RCTWSEFLLDAGVNT*VEAVKIPKSCWESL
Trigger: TAAGGATTCCCAGCAGCTCTTTGGGATTTTTACAGCTTCCACTCATGTGTTGACACCCGCGTCCAGGAGAAACTCGCTCCAAGTGCATCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS TCA 90 bp ACTTCTTTGGTCTCTCCTTGGCCTGCCCTCCCCTTTCACTGCCTATaGAGTTGGAGCCTACATCATGTCCCTGAAACTGCACAGAGAAAA +
Preference number: 5 (lower is better)
Translates to: TSLVSPWPALPFHCL*SWSLHHVPETAQRK
Trigger: TTTTCTCTGTGCAGTTTCAGGGACATGATGTAGGCTCCAACTTCATAGGCAGTGAAAGGGGAGGGCAGGCCAAGGAGAGACCAAAGAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS GCA 90 bp TACAGCTACTTGGACATAGAAAAGCACAGTGTGGGTAAGGGCACGTaGATACAAATGCTAGAAGCCTGGGCACAGACTGGGGTAGATTCC +
Preference number: 5 (lower is better)
Translates to: YSYLDIEKHSVGKGT*IQMLEAWAQTGVDS
Trigger: GGAATCTACCCCAGTCTGTGCCCAGGCTTCTAGCATTTGTATGCACGTGCCCTTACCCACACTGTGCTTTTCTATGTCCAAGTAGCTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS GCA 90 bp CGGAGGCCTGTGTGGCCTGGAATCTGCACATCAGCCCTCAGATTGTaGAGATTCCCTCCAACCCTTTACTTTAGATATAGGAAAAGAAGC +
Preference number: 5 (lower is better)
Translates to: RRPVWPGICTSALRL*RFPPTLYFRYRKRS
Trigger: GCTTCTTTTCCTATATCTAAAGTAAAGGGTTGGAGGGAATCTGCACAATCTGAGGGCTGATGTGCAGATTCCAGGCCACACAGGCCTCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS TCA 90 bp GACTATGGAAGACCCTGGCACTTGACACCCAAGGGATGTGGGGAATaGTATTATGTGGGGAATAAAGAGGGTGCTCTTTACTCCAGAGAG +
Preference number: 5 (lower is better)
Translates to: DYGRPWHLTPKGCGE*YYVGNKEGALYSRE
Trigger: CTCTCTGGAGTAAAGAGCACCCTCTTTATTCCCCACATAATATCATTCCCCACATCCCTTGGGTGTCAAGTGCCAGGGTCTTCCATAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS TCA 90 bp AGACAGAAAGACATCAGAAACTCCAACCCCCTTGGACATCCAGCCTaGGGAATCAACTTCAGGAATCTCCTCCAACTTCCTGCAGAAGAG +
Preference number: 5 (lower is better)
Translates to: RQKDIRNSNPLGHPA*GINFRNLLQLPAEE
Trigger: CTCTTCTGCAGGAAGTTGGAGGAGATTCCTGAAGTTGATTCCTCAGGCTGGATGTCCAAGGGGGTTGGAGTTTCTGATGTCTTTCTGTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS-3UTR CAA 90 bp TCAAAAACCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTATCATTTGCGAGCCTTCAAAAGTaGTGCGGCTGGTCCATGAGC +
Preference number: 5 (lower is better)
Translates to: SKTIHQTQAFPPSSAVSFASLQK*CGWSMS
Trigger: GCTCATGGACCAGCCGCACAACTTTTGAAGGCTCGC...AAATGATACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGGTTTTTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CAA 90 bp AATATCTCAAAAACCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTACGCCACTATCTGGGGTaGTTGAGGAGGATCTCCAGC +
Preference number: 5 (lower is better)
Translates to: NISKTIHQTQAFPPSSAVRHYLG*LRRISS
Trigger: GCTGGAGATCCTCCTCAACAACCCCAGATAGTGGCG...TACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGGTTTTTGAGATATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS TCA 90 bp GTCCATGGTCAAGAACTGTTCTACTGCAGCTTGCCAGGTATCTCTTaGCCTGTACCTCTCCAAACCTACCAAATGCAAACCAACACCCAA +
Preference number: 5 (lower is better)
Translates to: VHGQELFYCSLPGIS*PVPLQTYQMQTNTQ
Trigger: TTGGGTGTTGGTTTGCATTTGGTAGGTTTGGAGAGGTACAGGTCAAGAGATACCTGGCAAGCTGCAGTAGAACAGTTCTTGACCATGGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS-3UTR CAA 90 bp AATATCTCAAAAACCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTAGAGTACGTGACGGTTTaGAGTTCCTGCTCCAGCAGC +
Preference number: 5 (lower is better)
Translates to: NISKTIHQTQAFPPSSAVEYVTV*SSCSSS
Trigger: GCTGCTGGAGCAGGAACTCAAAACCGTCACGTACTC...TACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGGTTTTTGAGATATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CAA 90 bp ACCTTCCAGAACCTCAACTTTTCCCTTTCACAAAGTAGAAATAAACCATCTGCCGCAGTGATGAGGGAGTaGGTAGCCTCCGTTTCAGTG +
Preference number: 5 (lower is better)
Translates to: TFQNLNFSLSQSRNKPSAAVMRE*VASVSV
Trigger: CACTGAAACGGAGGCTACCAACTCCCTCATCACTGC...GGCAGATGGTTTATTTCTACTTTGTGAAAGGGAAAAGTTGAGGTTCTGGAAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CAA 90 bp TCAAAAACCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTATCATTTGGCCCATTTCAGTCTTaGTTCCCCAGGCCATTTCCA +
Preference number: 5 (lower is better)
Translates to: SKTIHQTQAFPPSSAVSFGPFQS*FPRPFP
Trigger: TGGAAATGGCCTGGGGAACAAAGACTGAAATGGGCC...AAATGATACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGGTTTTTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS GCA 90 bp GTGGGGAATAAAGAGGGTGCTCTTTACTCCAGAGAGGGGTTACCCTaGAAAGCTTTGTCGAAAGTATGCAAAGGCACAAATTGGACATTT +
Preference number: 5 (lower is better)
Translates to: VGNKEGALYSREGLP*KALSKVCKGTNWTF
Trigger: AAATGTCCAATTTGTGCCTTTGCATACTTTCGACAAAGCTTTGCAGGGTAACCCCTCTCTGGAGTAAAGAGCACCCTCTTTATTCCCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CCA 90 bp CTAAATTCTAAAGCCAGAAAAGAGTTCACAGCCTCTCCCAGTGCCTaGCAAAGTTTCAGTTTGGGACATTACCTTACACCCCCATCTTTC +
Preference number: 5 (lower is better)
Translates to: LNSKARKEFTASPSA*QSFSLGHYLTPPSF
Trigger: GAAAGATGGGGGTGTAAGGTAATGTCCCAAACTGAAACTTTGCCAGGCACTGGGAGAGGCTGTGAACTCTTTTCTGGCTTTAGAATTTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS-3UTR CAA 90 bp ACTATAATGCGAATACTTTATTATCGAGTGACTGGTATTAGCTTTTTGTCTGGGCGAAAGGCAGGCTTGTaGATACCCCCAGCTCCCTTC +
Preference number: 5 (lower is better)
Translates to: TIMRILYYRVTGISFLSGRKAGL*IPPAPF
Trigger: GAAGGGAGCTGGGGGTATCAACAAGCCTGCCTTTCG...CCCAGACAAAAAGCTAATACCAGTCACTCGATAATAAAGTATTCGCATTATAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CAA 90 bp ACCTTCCAGAACCTCAACTTTTCCCTTTCACAAAGTAGAAATAAACCATCTGCCTCAGACTGGAAGAGCTaGTCCAGGATAAATGGCCAG +
Preference number: 5 (lower is better)
Translates to: TFQNLNFSLSQSRNKPSASDWKS*SRINGQ
Trigger: CTGGCCATTTATCCTGGACAAGCTCTTCCAGTCTGA...GGCAGATGGTTTATTTCTACTTTGTGAAAGGGAAAAGTTGAGGTTCTGGAAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CAA 90 bp AATATCTCAAAAACCATACACCAAACCCAGGCTTTTCCACCTAGCTCTGCTGTACTCTCTCTCTCTTTTTaGTTCTCCTCAAACGCACAC +
Preference number: 5 (lower is better)
Translates to: NISKTIHQTQAFPPSSAVLSLSF*FSSNAH
Trigger: GTGTGCGTTTGAGGAGAACAAAAAAGAGAGAGAGAG...TACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTATGGTTTTTGAGATATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CAA 90 bp CTGGCGTCTCTCATTTCTCAAGGAAAGTTTGATTCAGGTATTCCTCCGGATGTATTTCTCAAGGAAAGTTaGATTCAGGTATTCCTCCGG +
Preference number: 5 (lower is better)
Translates to: LASLISQGKFDSGIPPDVFLKES*IQVFLR
Trigger: CCGGAGGAATACCTGAATCAAACTTTCCTTGAGAAA...TACATCCGGAGGAATACCTGAATCAAACTTTCCTTGAGAAATGAGAGACGCCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000557916.5
ENST00000559931.5
CDS-3UTR CAA 90 bp AGAAATCCGCTGAAGCCCTACCTGCCCCTCTTTGTAAAAAGAAGACAGTTTAAACAAAGTGCGTCTTTCTaGTTTTGTCCATATACACAC +
Preference number: 5 (lower is better)
Translates to: RNPLKPYLPLFVKRRQFKQSASF*FCPYTH
Trigger: GTGTGTATATGGACAAAACAAGAAAGACGCACTTTG...TTTAAACTGTCTTCTTTTTACAAAGAGGGGCAGGTAGGGCTTCAGCGGATTTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS-3UTR CAA 90 bp AGAAATCCGCTGAAGCCCTACCTGCCCCTCTTTGTAAAAAGAAGACAGTTTAAAGTGTCTTCTTTTAGCTaGCTCATAACTCAAAGATGG +
Preference number: 5 (lower is better)
Translates to: RNPLKPYLPLFVKRRQFKVSSFS*LITQRW
Trigger: CCATCTTTGAGTTATGAGCAAGCTAAAAGAAGACAC...TTTAAACTGTCTTCTTTTTACAAAGAGGGGCAGGTAGGGCTTCAGCGGATTTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS TCA 90 bp CTGCAAAGCTTTGTCGAAAGTATGCAAAGGCACAAATTGGACATTTaGCGAACACTTTTGATTCTAGCTATGATTTGTGTACACCCAATT +
Preference number: 5 (lower is better)
Translates to: LQSFVESMQRHKLDI*RTLLILAMICVHPI
Trigger: AATTGGGTGTACACAAATCATAGCTAGAATCAAAAGTGTTCGTCAAATGTCCAATTTGTGCCTTTGCATACTTTCGACAAAGCTTTGCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS GCA 72 bp CGCCCTCTCTTGCCCGCGGGGCCGGCTCAGCTCGGCTaGCCAAGCTCCCATCCTCGTCGCCGCCACCGCCGC +
Preference number: 6 (lower is better)
Translates to: RPLLPAGPAQLG*PSSHPRRRHRR
Trigger: GCGGCGGTGGCGGCGACGAGGATGGGAGCTTGGGCAGCCGAGCTGAGCCGGCCCCGCGGGCAAGAGAGGGCG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000288840.10
ENST00000557916.5
ENST00000612349.1
CDS CAA 90 bp GGGCTACCGGGCGGACTTCGGAGCGGCCGCAGCCTCCGCCCTCTCTaGCCCGCGGGGCCGGCTCAGCTCGGCTGCCCAAGCTCCCATCCT +
Preference number: 6 (lower is better)
Translates to: GLPGGLRSGRSLRPL*PAGPAQLGCPSSHP
Trigger: AGGATGGGAGCTTGGGCAGCCGAGCTGAGCCGGCCCCGCGGGCAAGAGAGGGCGGAGGCTGCGGCCGCTCCGAAGTCCGCCCGGTAGCCC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000288840.10
ENST00000557916.5
ENST00000612349.1
CDS CCA 72 bp CACACGGTAGGGCCGTCGGCGGCGGCGGCGAAGCTGTaGCAGCCGCACAGGGGCTTCAGCTCCACGGCGTGC +
Preference number: 6 (lower is better)
Translates to: HTVGPSAAAAKL*QPHRGFSSTAC
Trigger: GCACGCCGTGGAGCTGAAGCCCCTGTGCGGCTGCCACAGCTTCGCCGCCGCCGCCGACGGCCCTACCGTGTG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000288840.10
ENST00000557916.5
ENST00000612349.1
CDS GCA 72 bp AGTCCACCGATGCAGAGGTCGCAGCCCGCCCCACGCTaGCCTCGGACGCTTCGTGCGCCGAGGCTGCCGAGG +
Preference number: 6 (lower is better)
Translates to: SPPMQRSQPAPR*PRTLRAPRLPR
Trigger: CCTCGGCAGCCTCGGCGCACGAAGCGTCCGAGGGCAGCGTGGGGCGGGCTGCGACCTCTGCATCGGTGGACT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS GCA 72 bp TCGCAGCCCCACATGAAGCTCCGCCGCGGAGCGCCGTaGAGACCGCGCACAGCCTGTCGTCGAAGGGGCGCC +
Preference number: 6 (lower is better)
Translates to: SQPHMKLRRGAP*RPRTACRRRGA
Trigger: GGCGCCCCTTCGACGACAGGCTGTGCGCGGTCTGCACGGCGCTCCGCGGCGGAGCTTCATGTGGGGCTGCGA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288840.10
ENST00000612349.1
CDS CCA 72 bp CGCCGAGCCGCAGTCCGCGCGCGGCCAGCGGCTACATaGACCACAGCGGCGGGGCTGCTCAACAACTCCAGC +
Preference number: 6 (lower is better)
Translates to: RRAAVRARPAAT*TTAAGLLNNSS
Trigger: GCTGGAGTTGTTGAGCAGCCCCGCCGCTGTGGTCCATGTAGCCGCTGGCCGCGCGCGGACTGCGGCTCGGCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS CCA 72 bp CCCAGCTATGCGCCCGCCCAGTTACGGGAGCCAAGCTaGCGGCCAAGCGGTGGAGGCGGGTGGGCAGCCCAG +
Preference number: 6 (lower is better)
Translates to: PSYAPAQLREPS*RPSGGGGWAAQ
Trigger: CTGGGCTGCCCACCCGCCTCCACCGCTTGGCCGCCAGCTTGGCTCCCGTAACTGGGCGGGCGCATAGCTGGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS TCA 72 bp AGCCTGTCGTCGAAGGGGCGCCGCAGGGCGACAACATaGGGGAGCTCGCCGAGGCGGGACGGCCGGGAACAC +
Preference number: 6 (lower is better)
Translates to: SLSSKGRRRATT*GSSPRRDGREH
Trigger: GTGTTCCCGGCCGTCCCGCCTCGGCGAGCTCCCTCATGTTGTCGCCCTGCGGCGCCCCTTCGACGACAGGCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS GCA 72 bp CCACGCTCCAAGGGCACCCGGGGGAGCACCCGCAGCTaGGCCGACCCGCAGTGTCACAGAGAGAAGGGCACG +
Preference number: 6 (lower is better)
Translates to: PRSKGTRGSTRS*ADPQCHREKGT
Trigger: CGTGCCCTTCTCTCTGTGACACTGCGGGTCGGCGCAGCTGCGGGTGCTCCCCCGGGTGCCCTTGGAGCGTGG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS TCA 72 bp CGGGGCTCCCTGCAGTGGTCGGTGAAGGTGCGGAGGTaGCTGCTGCCAGGTGGGAGTCCCTCAGTGCCGGTG +
Preference number: 6 (lower is better)
Translates to: RGSLQWSVKVRR*LLPGGSPSVPV
Trigger: CACCGGCACTGAGGGACTCCCACCTGGCAGCAGTCACCTCCGCACCTTCACCGACCACTGCAGGGAGCCCCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS GCA 72 bp CTCCTTATCAGGACGCGCACCGCTGAGCCCCAGCTATaGGCCCGCCCAGTTACGGGAGCCAAGCTGGCGGCC +
Preference number: 6 (lower is better)
Translates to: LLIRTRTAEPQL*ARPVTGAKLAA
Trigger: GGCCGCCAGCTTGGCTCCCGTAACTGGGCGGGCGCATAGCTGGGGCTCAGCGGTGCGCGTCCTGATAAGGAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CCA 72 bp GGGCTGCAGGCGGCGCGCCGCCAGAAAGACCCCACATaGGCCGGCGAGCCTTCAAAAGTTGTGCGGCTGGTC +
Preference number: 6 (lower is better)
Translates to: GLQAARRQKDPT*AGEPSKVVRLV
Trigger: GACCAGCCGCACAACTTTTGAAGGCTCGCCGGCCCATGTGGGGTCTTTCTGGCGGCGCGCCGCCTGCAGCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS CAA 90 bp CGCGTCCGGTGCTCCCAGTACGCCACGCTGCACCAGTGGCTCGGCTaGGTGGCGTCCGGAGACATGCTGGCGTCTGAGAATTCACCCGGA +
Preference number: 6 (lower is better)
Translates to: RVRCSQYATLHQWLG*VASGDMLASENSPG
Trigger: TCCGGGTGAATTCTCAGACGCCAGCATGTCTCCGGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS TCA 72 bp TGGAAGGCGCAGTCTCCTTATCAGGACGCGCACCGCTaGGCCCCAGCTATGCGCCCGCCCAGTTACGGGAGC +
Preference number: 6 (lower is better)
Translates to: WKAQSPYQDAHR*APAMRPPSYGS
Trigger: GCTCCCGTAACTGGGCGGGCGCATAGCTGGGGCTCAGCGGTGCGCGTCCTGATAAGGAGACTGCGCCTTCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS TCA 72 bp GGGTCTTCTGTCACCGGGGCTCCCTGCAGTGGTCGGTaGAGGTGCGGAGGTGACTGCTGCCAGGTGGGAGTC +
Preference number: 6 (lower is better)
Translates to: GSSVTGAPCSGR*RCGGDCCQVGV
Trigger: GACTCCCACCTGGCAGCAGTCACCTCCGCACCTTCACCGACCACTGCAGGGAGCCCCGGTGACAGAAGACCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CAA 90 bp TCACTCCTCCCCTCCCTGCCCAACCACCTGAACGTGCCTGGCACCTaGACTCTGAGCTGGCTGGCTCCCTCTCCTCTGACCCGGCTGGCT +
Preference number: 6 (lower is better)
Translates to: SLLPSLPNHLNVPGT*TLSWLAPSPLTRLA
Trigger: AGCCAGCCGGGTCAGAGGAGAGGGAGCCAGCCAGCTCAGAGTCAAGGTGCCAGGCACGTTCAGGTGGTTGGGCAGGGAGGGGAGGAGTGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS GCA 72 bp ACTTTGCTCGCTAGCGGTGTGCCTGCGCTATGTGTGTaGGCGCATCTGTCTGCCCGGTGCCCCGGCCCTCTT +
Preference number: 6 (lower is better)
Translates to: TLLASGVPALCV*AHLSARCPGPL
Trigger: AAGAGGGCCGGGGCACCGGGCAGACAGATGCGCGCACACACATAGCGCAGGCACACCGCTAGCGAGCAAAGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CAA 90 bp AGCGAGCGCTCCTTGAGCCGCTTCAGCAGCGAGTACGTGACGGTTTaGAGTTCCTGCTCCAGCAGCAGCAGCCGCGAGCGCGCTTCGCGA +
Preference number: 6 (lower is better)
Translates to: SERSLSRFSSEYVTV*SSCSSSSSRERASR
Trigger: TCGCGAAGCGCGCTCGCGGCTGCTGCTGCTGGAGCAGGAACTCAAAACCGTCACGTACTCGCTGCTGAAGCGGCTCAAGGAGCGCTCGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000288840.10
ENST00000557916.5
ENST00000612349.1
CDS TCA 72 bp GCCAAAGTCGCCGCACCAGCCCCGAGCGTTTGGACCTaGACATACGATATCCTTTGGCGCCAGGGGTGGGGG +
Preference number: 6 (lower is better)
Translates to: AKVAAPAPSVWT*TYDILWRQGWG
Trigger: CCCCCACCCCTGGCGCCAAAGGATATCGTATGTTCAGGTCCAAACGCTCGGGGCTGGTGCGGCGACTTTGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000288840.10
ENST00000612349.1
CDS TCA 72 bp CACCTGAGCACCAGGGCCTGGCCAGGTAAGCAAGGCTaGGGGTGGGGCGTGTGCAGGAAATCCCAAGAGGAG +
Preference number: 6 (lower is better)
Translates to: HLSTRAWPGKQG*GWGVCRKSQEE
Trigger: CTCCTCTTGGGATTTCCTGCACACGCCCCACCCTCAGCCTTGCTTACCTGGCCAGGCCCTGGTGCTCAGGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CCA 72 bp CCCAGTACGCCACGCTGCACCAGTGGCTCGGCTTGGTaGCGTCCGGAGACATGCTGGCGTCTGAGAATTCAC +
Preference number: 6 (lower is better)
Translates to: PSTPRCTSGSAW*RPETCWRLRIH
Trigger: GTGAATTCTCAGACGCCAGCATGTCTCCGGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS CCA 72 bp GCTCCCAGTACGCCACGCTGCACCAGTGGCTCGGCTTaGTGGCGTCCGGAGACATGCTGGCGTCTGAGAATT +
Preference number: 6 (lower is better)
Translates to: APSTPRCTSGSA*WRPETCWRLRI
Trigger: AATTCTCAGACGCCAGCATGTCTCCGGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS CAA 72 bp TGCTCCCAGTACGCCACGCTGCACCAGTGGCTCGGCTaGGTGGCGTCCGGAGACATGCTGGCGTCTGAGAAT +
Preference number: 6 (lower is better)
Translates to: CSQYATLHQWLG*VASGDMLASEN
Trigger: ATTCTCAGACGCCAGCATGTCTCCGGACGCCACCAAGCCGAGCCACTGGTGCAGCGTGGCGTACTGGGAGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS GCA 72 bp GAAAGGCCAACGCCGTCTCAGGTCCCAGGCGCTAGATaGACTTGGAGCGAGTTTCTCCTGGACGCGGGTGTC +
Preference number: 6 (lower is better)
Translates to: ERPTPSQVPGAR*TWSEFLLDAGV
Trigger: GACACCCGCGTCCAGGAGAAACTCGCTCCAAGTGCATCTAGCGCCTGGGACCTGAGACGGCGTTGGCCTTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS CCA 72 bp CCACATGGGCCGGCGAGCCTTCAAAAGTTGTGCGGCTaGTCCATGAGCACAAAGCGCTCGCGCGAACCCCTA +
Preference number: 6 (lower is better)
Translates to: PHGPASLQKLCG*SMSTKRSREPL
Trigger: TAGGGGTTCGCGCGAGCGCTTTGTGCTCATGGACCAGCCGCACAACTTTTGAAGGCTCGCCGGCCCATGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS CAA 72 bp TCCTTGAGCCGCTTCAGCAGCGAGTACGTGACGGTTTaGAGTTCCTGCTCCAGCAGCAGCAGCCGCGAGCGC +
Preference number: 6 (lower is better)
Translates to: SLSRFSSEYVTV*SSCSSSSSRER
Trigger: GCGCTCGCGGCTGCTGCTGCTGGAGCAGGAACTCAAAACCGTCACGTACTCGCTGCTGAAGCGGCTCAAGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000288840.10
ENST00000557916.5
ENST00000612349.1
CDS GCA 72 bp AAGACCCCACATGGGCCGGCGAGCCTTCAAAAGTTGTaGGGCTGGTCCATGAGCACAAAGCGCTCGCGCGAA +
Preference number: 6 (lower is better)
Translates to: KTPHGPASLQKL*GWSMSTKRSRE
Trigger: TTCGCGCGAGCGCTTTGTGCTCATGGACCAGCCGCACAACTTTTGAAGGCTCGCCGGCCCATGTGGGGTCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS GCA 72 bp TGCCGGTGTTCCAGTGTACTTTGCTCGCTAGCGGTGTaGCTGCGCTATGTGTGTGCGCGCATCTGTCTGCCC +
Preference number: 6 (lower is better)
Translates to: CRCSSVLCSLAV*LRYVCARICLP
Trigger: GGGCAGACAGATGCGCGCACACACATAGCGCAGGCACACCGCTAGCGAGCAAAGTACACTGGAACACCGGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS GCA 72 bp GTGGGAGTCCCTCAGTGCCGGTGTTCCAGTGTACTTTaGTCGCTAGCGGTGTGCCTGCGCTATGTGTGTGCG +
Preference number: 6 (lower is better)
Translates to: VGVPQCRCSSVL*SLAVCLRYVCA
Trigger: CGCACACACATAGCGCAGGCACACCGCTAGCGAGCAAAGTACACTGGAACACCGGCACTGAGGGACTCCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS GCA 72 bp GGCCAGTGCACCAGAAGGTTCAGCTCAGCCCAGGCATaGCTCTGGTTAGCCCCCAGGGGGTACTTAGCCTTT +
Preference number: 6 (lower is better)
Translates to: GQCTRRFSSAQA*LWLAPRGYLAF
Trigger: AAAGGCTAAGTACCCCCTGGGGGCTAACCAGAGGCATGCCTGGGCTGAGCTGAACCTTCTGGTGCACTGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CCA 72 bp CCAACGCCGTCTCAGGTCCCAGGCGCTAGATGCACTTaGAGCGAGTTTCTCCTGGACGCGGGTGTCAACACA +
Preference number: 6 (lower is better)
Translates to: PTPSQVPGARCT*SEFLLDAGVNT
Trigger: TGTGTTGACACCCGCGTCCAGGAGAAACTCGCTCCAAGTGCATCTAGCGCCTGGGACCTGAGACGGCGTTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS CCA 72 bp GTGGTCGGTGAAGGTGCGGAGGTGACTGCTGCCAGGTaGGAGTCCCTCAGTGCCGGTGTTCCAGTGTACTTT +
Preference number: 6 (lower is better)
Translates to: VVGEGAEVTAAR*ESLSAGVPVYF
Trigger: AAAGTACACTGGAACACCGGCACTGAGGGACTCCCACCTGGCAGCAGTCACCTCCGCACCTTCACCGACCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CAA 72 bp AGAAAGACCCCACATGGGCCGGCGAGCCTTCAAAAGTaGTGCGGCTGGTCCATGAGCACAAAGCGCTCGCGC +
Preference number: 6 (lower is better)
Translates to: RKTPHGPASLQK*CGWSMSTKRSR
Trigger: GCGCGAGCGCTTTGTGCTCATGGACCAGCCGCACAACTTTTGAAGGCTCGCCGGCCCATGTGGGGTCTTTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS CAA 72 bp CGACTTCGCCAAAGTCGCCGCACCAGCCCCGAGCGTTaGGACCTGAACATACGATATCCTTTGGCGCCAGGG +
Preference number: 6 (lower is better)
Translates to: RLRQSRRTSPER*DLNIRYPLAPG
Trigger: CCCTGGCGCCAAAGGATATCGTATGTTCAGGTCCAAACGCTCGGGGCTGGTGCGGCGACTTTGGCGAAGTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000288840.10
ENST00000612349.1
CDS CAA 72 bp GGTGGGAGTCCCTCAGTGCCGGTGTTCCAGTGTACTTaGCTCGCTAGCGGTGTGCCTGCGCTATGTGTGTGC +
Preference number: 6 (lower is better)
Translates to: GGSPSVPVFQCT*LASGVPALCVC
Trigger: GCACACACATAGCGCAGGCACACCGCTAGCGAGCAAAGTACACTGGAACACCGGCACTGAGGGACTCCCACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS GCA 72 bp GGAGCTCCTGGCACTTTAAGGCCGCCTGAGCCTAATTaGCCAGATTCCCCTGGCAGCCAGATAAACAGCGCG +
Preference number: 6 (lower is better)
Translates to: GAPGTLRPPEPN*PDSPGSQINSA
Trigger: CGCGCTGTTTATCTGGCTGCCAGGGGAATCTGGGCAATTAGGCTCAGGCGGCCTTAAAGTGCCAGGAGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CCA 72 bp TCAGGCCAGGGGCAAGAGGATCAACCTGGCACATACTaGAAACTCTTCCCGGACCATCGGTCCTCCCAGCTG +
Preference number: 6 (lower is better)
Translates to: SGQGQEDQPGTY*KLFPDHRSSQL
Trigger: CAGCTGGGAGGACCGATGGTCCGGGAAGAGTTTCCAGTATGTGCCAGGTTGATCCTCTTGCCCCTGGCCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CAA 90 bp CTGGCTCCCTCTCCTCTGACCCATCCTCCAAGGTCCGGCTCCAGGTaGGAGCTGTGGAGCTCCTGCATGCCATCCTATTACATACACACC +
Preference number: 6 (lower is better)
Translates to: LAPSPLTHPPRSGSR*ELWSSCMPSYYIHT
Trigger: GGTGTGTATGTAATAGGATGGCATGCAGGAGCTCCACAGCTCCAACCTGGAGCCGGACCTTGGAGGATGGGTCAGAGGAGAGGGAGCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS GCA 72 bp TGCTGGGAATCCTTAATTAAAAATGCAGTCCACCGATaGAGAGGTCGCAGCCCGCCCCACGCTGCCCTCGGA +
Preference number: 6 (lower is better)
Translates to: CWESLIKNAVHR*RGRSPPHAALG
Trigger: TCCGAGGGCAGCGTGGGGCGGGCTGCGACCTCTGCATCGGTGGACTGCATTTTTAATTAAGGATTCCCAGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS GCA 72 bp GGTCCGGCTCCAGGTTGGAGCTGTGGAGCTCCTGCATaGCATCCTATTACATACACACCCACAGCCTTCTGG +
Preference number: 6 (lower is better)
Translates to: GPAPGWSCGAPA*HPITYTPTAFW
Trigger: CCAGAAGGCTGTGGGTGTGTATGTAATAGGATGGCATGCAGGAGCTCCACAGCTCCAACCTGGAGCCGGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CCA 72 bp ACTAGCCCCAAGGCCACAACTCAAGTTGATGGAGAGTaGGCTCTGAACAGCAGGGGTCCACACTGCCCAGGA +
Preference number: 6 (lower is better)
Translates to: TSPKATTQVDGE*ALNSRGPHCPG
Trigger: TCCTGGGCAGTGTGGACCCCTGCTGTTCAGAGCCCACTCTCCATCAACTTGAGTTGTGGCCTTGGGGCTAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CCA 72 bp TTCCGTCCACATAGGCACCCACCGAGCTCAGCGAACTaGCTTTTCCTGGGACAGAAAGACACCCAAGGGGGA +
Preference number: 6 (lower is better)
Translates to: FRPHRHPPSSAN*LFLGQKDTQGG
Trigger: TCCCCCTTGGGTGTCTTTCTGTCCCAGGAAAAGCCAGTTCGCTGAGCTCGGTGGGTGCCTATGTGGACGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CCA 72 bp ACCCATCCTCCAAGGTCCGGCTCCAGGTTGGAGCTGTaGAGCTCCTGCATGCCATCCTATTACATACACACC +
Preference number: 6 (lower is better)
Translates to: THPPRSGSRLEL*SSCMPSYYIHT
Trigger: GGTGTGTATGTAATAGGATGGCATGCAGGAGCTCCACAGCTCCAACCTGGAGCCGGACCTTGGAGGATGGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS TCA 72 bp ATACACACCCACAGCCTTCTGGTAGTTCACACCCAATaGCCTGGCCCTGCACACTTCCCTTCTTCCCCCATC +
Preference number: 6 (lower is better)
Translates to: IHTHSLLVVHTQ*PGPAHFPSSPI
Trigger: GATGGGGGAAGAAGGGAAGTGTGCAGGGCCAGGTCATTGGGTGTGAACTACCAGAAGGCTGTGGGTGTGTAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS GCA 72 bp TGGCTGAGAAGGGAGGTAACTCATCCAAAGTCAAGCTaGACGTTACTAGCTGGGCAGAGCCTGGGACCAGGT +
Preference number: 6 (lower is better)
Translates to: WLRREVTHPKSS*TLLAGQSLGPG
Trigger: ACCTGGTCCCAGGCTCTGCCCAGCTAGTAACGTGCAGCTTGACTTTGGATGAGTTACCTCCCTTCTCAGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS GCA 72 bp CTGAGGAATCAACTTCAGGAATCTCCTCCAACTTCCTaGAGAAGAGCAGTCAGCCAGGGGCCAGTGCACCAG +
Preference number: 6 (lower is better)
Translates to: LRNQLQESPPTS*RRAVSQGPVHQ
Trigger: CTGGTGCACTGGCCCCTGGCTGACTGCTCTTCTGCAGGAAGTTGGAGGAGATTCCTGAAGTTGATTCCTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CAA 72 bp TACATGGGCTTTTCCCGCAGGATCCGAAAGGCAGGCTaGTTGATACCCCCAGCTCCCTTCTTACTCCCTGCA +
Preference number: 6 (lower is better)
Translates to: YMGFSRRIRKAG*LIPPAPFLLPA
Trigger: TGCAGGGAGTAAGAAGGGAGCTGGGGGTATCAACAAGCCTGCCTTTCGGATCCTGCGGGAAAAGCCCATGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS CCA 72 bp ACGTTACTAGCTGGGCAGAGCCTGGGACCAGGTCCATaGTCAAGAACTGTTCTACTGCAGCTTGCCAGGTAT +
Preference number: 6 (lower is better)
Translates to: TLLAGQSLGPGP*SRTVLLQLARY
Trigger: ATACCTGGCAAGCTGCAGTAGAACAGTTCTTGACCATGGACCTGGTCCCAGGCTCTGCCCAGCTAGTAACGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS TCA 72 bp TGGAGCGAGTTTCTCCTGGACGCGGGTGTCAACACATaGGTGGAAGCTGTAAAAATCCCAAAGAGCTGCTGG +
Preference number: 6 (lower is better)
Translates to: WSEFLLDAGVNT*VEAVKIPKSCW
Trigger: CCAGCAGCTCTTTGGGATTTTTACAGCTTCCACTCATGTGTTGACACCCGCGTCCAGGAGAAACTCGCTCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000288840.10
CDS GCA 72 bp GGAAATAGCACCTACTTCTTTGGTCTCTCCTTGGCCTaGCCTCCCCTTTCACTGCCTATGAAGTTGGAGCCT +
Preference number: 6 (lower is better)
Translates to: GNSTYFFGLSLA*PPLSLPMKLEP
Trigger: AGGCTCCAACTTCATAGGCAGTGAAAGGGGAGGGCAGGCCAAGGAGAGACCAAAGAAGTAGGTGCTATTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CCA 72 bp GTGGGTAAGGGCACGTGCATACAAATGCTAGAAGCCTaGGCACAGACTGGGGTAGATTCCGGAATTGAGGTA +
Preference number: 6 (lower is better)
Translates to: VGKGTCIQMLEA*AQTGVDSGIEV
Trigger: TACCTCAATTCCGGAATCTACCCCAGTCTGTGCCCAGGCTTCTAGCATTTGTATGCACGTGCCCTTACCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS GCA 72 bp TTGGACATAGAAAAGCACAGTGTGGGTAAGGGCACGTaGATACAAATGCTAGAAGCCTGGGCACAGACTGGG +
Preference number: 6 (lower is better)
Translates to: LDIEKHSVGKGT*IQMLEAWAQTG
Trigger: CCCAGTCTGTGCCCAGGCTTCTAGCATTTGTATGCACGTGCCCTTACCCACACTGTGCTTTTCTATGTCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CAA 90 bp GGACGGAGGCCTGTGTGGCCTGGAATCTGCACATCAGCCCTCAGATaGTGCAGATTCCCTCCAACCCTTTACTTTAGATATAGGAAAAGA +
Preference number: 6 (lower is better)
Translates to: GRRPVWPGICTSALR*CRFPPTLYFRYRKR
Trigger: TCTTTTCCTATATCTAAAGTAAAGGGTTGGAGGGAATCTGCACAATCTGAGGGCTGATGTGCAGATTCCAGGCCACACAGGCCTCCGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CAA 90 bp AGTTTGGGACATTACCTTACACCCCCATCTTTCCAGCTCAGCATCTaGCTTAGGAAAAGATCCACATGCCTCCCGGGTTGCCAAGTTTCC +
Preference number: 6 (lower is better)
Translates to: SLGHYLTPPSFQLSI*LRKRSTCLPGCQVS
Trigger: GGAAACTTGGCAACCCGGGAGGCATGTGGATCTTTTCCTAAGCAAGATGCTGAGCTGGAAAGATGGGGGTGTAAGGTAATGTCCCAAACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS TCA 72 bp GACATCAGAAACTCCAACCCCCTTGGACATCCAGCCTaGGGAATCAACTTCAGGAATCTCCTCCAACTTCCT +
Preference number: 6 (lower is better)
Translates to: DIRNSNPLGHPA*GINFRNLLQLP
Trigger: AGGAAGTTGGAGGAGATTCCTGAAGTTGATTCCTCAGGCTGGATGTCCAAGGGGGTTGGAGTTTCTGATGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS GCA 72 bp ACCAGGTCCATGGTCAAGAACTGTTCTACTGCAGCTTaGCAGGTATCTCTTGACCTGTACCTCTCCAAACCT +
Preference number: 6 (lower is better)
Translates to: TRSMVKNCSTAA*QVSLDLYLSKP
Trigger: AGGTTTGGAGAGGTACAGGTCAAGAGATACCTGGCAAGCTGCAGTAGAACAGTTCTTGACCATGGACCTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CAA 90 bp GGTCCATGGTCAAGAACTGTTCTACTGCAGCTTGCCAGGTATCTCTaGACCTGTACCTCTCCAAACCTACCAAATGCAAACCAACACCCA +
Preference number: 6 (lower is better)
Translates to: GPWSRTVLLQLARYL*TCTSPNLPNANQHP
Trigger: TGGGTGTTGGTTTGCATTTGGTAGGTTTGGAGAGGTACAGGTCAAGAGATACCTGGCAAGCTGCAGTAGAACAGTTCTTGACCATGGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS TCA 72 bp AGACCCTGGCACTTGACACCCAAGGGATGTGGGGAATaGTATTATGTGGGGAATAAAGAGGGTGCTCTTTAC +
Preference number: 6 (lower is better)
Translates to: RPWHLTPKGCGE*YYVGNKEGALY
Trigger: GTAAAGAGCACCCTCTTTATTCCCCACATAATATCATTCCCCACATCCCTTGGGTGTCAAGTGCCAGGGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CAA 72 bp CCTGTGTGGCCTGGAATCTGCACATCAGCCCTCAGATaGTGCAGATTCCCTCCAACCCTTTACTTTAGATAT +
Preference number: 6 (lower is better)
Translates to: PVWPGICTSALR*CRFPPTLYFRY
Trigger: ATATCTAAAGTAAAGGGTTGGAGGGAATCTGCACAATCTGAGGGCTGATGTGCAGATTCCAGGCCACACAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS TCA 72 bp CAAAACTTGAGAAGGACTATGGAAGACCCTGGCACTTaGCACCCAAGGGATGTGGGGAATGATATTATGTGG +
Preference number: 6 (lower is better)
Translates to: QNLRRTMEDPGT*HPRDVGNDIMW
Trigger: CCACATAATATCATTCCCCACATCCCTTGGGTGTCAAGTGCCAGGGTCTTCCATAGTCCTTCTCAAGTTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS TCA 72 bp CAAGAACTGTTCTACTGCAGCTTGCCAGGTATCTCTTaGCCTGTACCTCTCCAAACCTACCAAATGCAAACC +
Preference number: 6 (lower is better)
Translates to: QELFYCSLPGIS*PVPLQTYQMQT
Trigger: GGTTTGCATTTGGTAGGTTTGGAGAGGTACAGGTCAAGAGATACCTGGCAAGCTGCAGTAGAACAGTTCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CAA 90 bp AAAGAGGGTGCTCTTTACTCCAGAGAGGGGTTACCCTGCAAAGCTTaGTCGAAAGTATGCAAAGGCACAAATTGGACATTTGACGAACAC +
Preference number: 6 (lower is better)
Translates to: KEGALYSREGLPCKA*SKVCKGTNWTFDEH
Trigger: GTGTTCGTCAAATGTCCAATTTGTGCCTTTGCATACTTTCGACAAAGCTTTGCAGGGTAACCCCTCTCTGGAGTAAAGAGCACCCTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS GCA 72 bp AAAGAGGGTGCTCTTTACTCCAGAGAGGGGTTACCCTaGAAAGCTTTGTCGAAAGTATGCAAAGGCACAAAT +
Preference number: 6 (lower is better)
Translates to: KEGALYSREGLP*KALSKVCKGTN
Trigger: ATTTGTGCCTTTGCATACTTTCGACAAAGCTTTGCAGGGTAACCCCTCTCTGGAGTAAAGAGCACCCTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CAA 72 bp TCAAGAACTGTTCTACTGCAGCTTGCCAGGTATCTCTaGACCTGTACCTCTCCAAACCTACCAAATGCAAAC +
Preference number: 6 (lower is better)
Translates to: SRTVLLQLARYL*TCTSPNLPNAN
Trigger: GTTTGCATTTGGTAGGTTTGGAGAGGTACAGGTCAAGAGATACCTGGCAAGCTGCAGTAGAACAGTTCTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS TCA 72 bp GACCCTAAACTCTATACAAAAGCTGAACACAAAACTTaGGAAGGACTATGGAAGACCCTGGCACTTGACACC +
Preference number: 6 (lower is better)
Translates to: DPKLYTKAEHKT*EGLWKTLALDT
Trigger: GGTGTCAAGTGCCAGGGTCTTCCATAGTCCTTCTCAAGTTTTGTGTTCAGCTTTTGTATAGAGTTTAGGGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CAA 72 bp GCTCTTTACTCCAGAGAGGGGTTACCCTGCAAAGCTTaGTCGAAAGTATGCAAAGGCACAAATTGGACATTT +
Preference number: 6 (lower is better)
Translates to: ALYSREGLPCKA*SKVCKGTNWTF
Trigger: AAATGTCCAATTTGTGCCTTTGCATACTTTCGACAAAGCTTTGCAGGGTAACCCCTCTCTGGAGTAAAGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS GCA 72 bp AGAGAGGGGTTACCCTGCAAAGCTTTGTCGAAAGTATaGAAAGGCACAAATTGGACATTTGACGAACACTTT +
Preference number: 6 (lower is better)
Translates to: REGLPCKALSKV*KGTNWTFDEHF
Trigger: AAAGTGTTCGTCAAATGTCCAATTTGTGCCTTTGCATACTTTCGACAAAGCTTTGCAGGGTAACCCCTCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS GCA 72 bp GTAATCCAGTATCTGGCTTCTTCATCTACTCACGGATaGCTCCAAGACCCTAAACTCTATACAAAAGCTGAA +
Preference number: 6 (lower is better)
Translates to: VIQYLASSSTHG*LQDPKLYTKAE
Trigger: TTCAGCTTTTGTATAGAGTTTAGGGTCTTGGAGGCATCCGTGAGTAGATGAAGAAGCCAGATACTGGATTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CAA 90 bp TCTAGCTATGATTTGTGTACACCCAATTTCACAACTTACAGCTACTaGGACATAGAAAAGCACAGTGTGGGTAAGGGCACGTGCATACAA +
Preference number: 6 (lower is better)
Translates to: SSYDLCTPNFTTYSY*DIEKHSVGKGTCIQ
Trigger: TTGTATGCACGTGCCCTTACCCACACTGTGCTTTTCTATGTCCAAGTAGCTGTAAGTTGTGAAATTGGGTGTACACAAATCATAGCTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CAA 90 bp CCTGCAAAGCTTTGTCGAAAGTATGCAAAGGCACAAATTGGACATTaGACGAACACTTTTGATTCTAGCTATGATTTGTGTACACCCAAT +
Preference number: 6 (lower is better)
Translates to: PAKLCRKYAKAQIGH*TNTFDSSYDLCTPN
Trigger: ATTGGGTGTACACAAATCATAGCTAGAATCAAAAGTGTTCGTCAAATGTCCAATTTGTGCCTTTGCATACTTTCGACAAAGCTTTGCAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CAA 90 bp GCACAAATTGGACATTTGACGAACACTTTTGATTCTAGCTATGATTaGTGTACACCCAATTTCACAACTTACAGCTACTTGGACATAGAA +
Preference number: 6 (lower is better)
Translates to: AQIGHLTNTFDSSYD*CTPNFTTYSYLDIE
Trigger: TTCTATGTCCAAGTAGCTGTAAGTTGTGAAATTGGGTGTACACAAATCATAGCTAGAATCAAAAGTGTTCGTCAAATGTCCAATTTGTGC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS CAA 72 bp CTTTGTCGAAAGTATGCAAAGGCACAAATTGGACATTaGACGAACACTTTTGATTCTAGCTATGATTTGTGT +
Preference number: 6 (lower is better)
Translates to: LCRKYAKAQIGH*TNTFDSSYDLC
Trigger: ACACAAATCATAGCTAGAATCAAAAGTGTTCGTCAAATGTCCAATTTGTGCCTTTGCATACTTTCGACAAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1
CDS TCA 72 bp TTTGTCGAAAGTATGCAAAGGCACAAATTGGACATTTaGCGAACACTTTTGATTCTAGCTATGATTTGTGTA +
Preference number: 6 (lower is better)
Translates to: FVESMQRHKLDI*RTLLILAMICV
Trigger: TACACAAATCATAGCTAGAATCAAAAGTGTTCGTCAAATGTCCAATTTGTGCCTTTGCATACTTTCGACAAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612349.1