RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SLX4IP (Homo sapiens)

Ensembl gene IDs: ENSG00000149346

Ensembl transcript IDs: ENST00000334534.10, ENST00000488816.1

Found 333 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCTACTCAGGCTGAGGAGCAGGGGGATGGATTGTACCCCTGGAGCTaGAAGGCAGCACGGCAGCACTGTCTTTGCACGGTCCATTGTGTG +
Preference number: 1 (lower is better)
Translates to: PTQAEEQGDGLYPWS*KAARQHCLCTVHCV
Trigger: CACACAATGGACCGTGCAAAGACAGTGCTGCCGTGCTGCCTTTCAGCTCCAGGGGTACAATCCATCCCCCTGCTCCTCAGCCTGAGTAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR GCA 90 bp GAAGGACCCGGACAGCGAAGAGTTGAGGTTTCCATGACATCTCCCTaGCCTAGCGTAGCTCCGCTTTCTCACCAATGTCTGCCAGTAGAC +
Preference number: 1 (lower is better)
Translates to: EGPGQRRVEVSMTSP*PSVAPLSHQCLPVD
Trigger: GTCTACTGGCAGACATTGGTGAGAAAGCGGAGCTACGCTAGGGCAGGGAGATGTCATGGAAACCTCAACTCTTCGCTGTCCGGGTCCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488816.1
3UTR TCA 90 bp CACGGCAGCACTGTCTTTGCACGGTCCATTGTGTGGTCTGCACAGTaGTGTGCCAAGAAGGGGCTCATGATCAGTTTCTTCATGCAGTCC +
Preference number: 1 (lower is better)
Translates to: HGSTVFARSIVWSAQ*CAKKGLMISFFMQS
Trigger: GGACTGCATGAAGAAACTGATCATGAGCCCCTTCTTGGCACATCACTGTGCAGACCACACAATGGACCGTGCAAAGACAGTGCTGCCGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR GCA 90 bp CAAACCAAAATCCTGGAGGTGGGTGCAAGAGCAGGGACTGGGACATaGTTGAGCTACAGGCAACAACGAGCCTCTCTGATGTCTTCTCCT +
Preference number: 1 (lower is better)
Translates to: QTKILEVGARAGTGT*LSYRQQRASLMSSP
Trigger: AGGAGAAGACATCAGAGAGGCTCGTTGTTGCCTGTAGCTCAAGCATGTCCCAGTCCCTGCTCTTGCACCCACCTCCAGGATTTTGGTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR TCA 90 bp GGTCCATTGTGTGGTCTGCACAGTGATGTGCCAAGAAGGGGCTCATaGTCAGTTTCTTCATGCAGTCCTTGCACAGTCTCCTCCCTGACA +
Preference number: 1 (lower is better)
Translates to: GPLCGLHSDVPRRGS*SVSSCSPCTVSSLT
Trigger: TGTCAGGGAGGAGACTGTGCAAGGACTGCATGAAGAAACTGATCATGAGCCCCTTCTTGGCACATCACTGTGCAGACCACACAATGGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR GCA 90 bp AAGGCAGCACGGCAGCACTGTCTTTGCACGGTCCATTGTGTGGTCTaGACAGTGATGTGCCAAGAAGGGGCTCATGATCAGTTTCTTCAT +
Preference number: 1 (lower is better)
Translates to: KAARQHCLCTVHCVV*TVMCQEGAHDQFLH
Trigger: ATGAAGAAACTGATCATGAGCCCCTTCTTGGCACATCACTGTGCAGACCACACAATGGACCGTGCAAAGACAGTGCTGCCGTGCTGCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR GCA 90 bp AATACTGTTTGCTCTAAGAGAGGCGCCTACAGTGGGCCATGGAAATaGACATTCTACCAGGTACTCGGTTTCCACTCTGTGCAGCCCACC +
Preference number: 1 (lower is better)
Translates to: NTVCSKRGAYSGPWK*TFYQVLGFHSVQPT
Trigger: GGTGGGCTGCACAGAGTGGAAACCGAGTACCTGGTAGAATGTGCATTTCCATGGCCCACTGTAGGCGCCTCTCTTAGAGCAAACAGTATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR TCA 90 bp CTTCATGGGTGCCATGGCTGCCATACTGTAGAACCCGGAAGAGAGTaGCCCATACACCAAACCCAAGTGTTTTACGAGTTTGAGGGAGTC +
Preference number: 1 (lower is better)
Translates to: LHGCHGCHTVEPGRE*PIHQTQVFYEFEGV
Trigger: GACTCCCTCAAACTCGTAAAACACTTGGGTTTGGTGTATGGGTCACTCTCTTCCGGGTTCTACAGTATGGCAGCCATGGCACCCATGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR GCA 90 bp CAGCACTGTCTTTGCACGGTCCATTGTGTGGTCTGCACAGTGATGTaGCAAGAAGGGGCTCATGATCAGTTTCTTCATGCAGTCCTTGCA +
Preference number: 1 (lower is better)
Translates to: QHCLCTVHCVVCTVM*QEGAHDQFLHAVLA
Trigger: TGCAAGGACTGCATGAAGAAACTGATCATGAGCCCCTTCTTGGCACATCACTGTGCAGACCACACAATGGACCGTGCAAAGACAGTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CCA 90 bp GCAACCAGGCTGCAGGAAGCACTGGGGAGTGTTCTATTAGTCCAGTaGTTCTCAAACGCGAGCATGTTTCAGAATCACCCAAAGGCAGTT +
Preference number: 1 (lower is better)
Translates to: ATRLQEALGSVLLVQ*FSNASMFQNHPKAV
Trigger: AACTGCCTTTGGGTGATTCTGAAACATGCTCGCGTTTGAGAACCACTGGACTAATAGAACACTCCCCAGTGCTTCCTGCAGCCTGGTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR TCA 90 bp GGTCTGCCAAGAAGGAATTCAAGGAAATTGGGAATGACGACACTGTaGTCCCAGGCCACTCTCTTGAGCAGAGGTTTCCTTCCCTTATGT +
Preference number: 1 (lower is better)
Translates to: GLPRRNSRKLGMTTL*SQATLLSRGFLPLC
Trigger: ACATAAGGGAAGGAAACCTCTGCTCAAGAGAGTGGCCTGGGATCACAGTGTCGTCATTCCCAATTTCCTTGAATTCCTTCTTGGCAGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR TCA 90 bp AGCCAGGAGACAGTCATTTCGCAGCAGTGGAGTCAAACACTATCCTaGAGCAAAACCTTGTTCTGGTGGTTTGTAAACTTGGATTCTGCA +
Preference number: 1 (lower is better)
Translates to: SQETVISQQWSQTLS*SKTLFWWFVNLDSA
Trigger: TGCAGAATCCAAGTTTACAAACCACCAGAACAAGGTTTTGCTTCAGGATAGTGTTTGACTCCACTGCTGCGAAATGACTGTCTCCTGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488816.1
3UTR GCA 90 bp CCAAGATGGAATTTCATGACCCAAAATGGTGCCATGAAATATAGCTaGTGCTTCATGAGTCTTACTGGTCTTAACAAGTGGGGACAGGAG +
Preference number: 1 (lower is better)
Translates to: PRWNFMTQNGAMKYS*CFMSLTGLNKWGQE
Trigger: CTCCTGTCCCCACTTGTTAAGACCAGTAAGACTCATGAAGCAGCAGCTATATTTCATGGCACCATTTTGGGTCATGAAATTCCATCTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CCA 90 bp ATGAAATATAGCTGCTGCTTCATGAGTCTTACTGGTCTTAACAAGTaGGGACAGGAGATACGGGAAAGGATAGAACGGGATGGAATAAAC +
Preference number: 1 (lower is better)
Translates to: MKYSCCFMSLTGLNK*GQEIRERIERDGIN
Trigger: GTTTATTCCATCCCGTTCTATCCTTTCCCGTATCTCCTGTCCCCACTTGTTAAGACCAGTAAGACTCATGAAGCAGCAGCTATATTTCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR GCA 90 bp AGATGGAATTTCATGACCCAAAATGGTGCCATGAAATATAGCTGCTaGTTCATGAGTCTTACTGGTCTTAACAAGTGGGGACAGGAGATA +
Preference number: 1 (lower is better)
Translates to: RWNFMTQNGAMKYSC*FMSLTGLNKWGQEI
Trigger: TATCTCCTGTCCCCACTTGTTAAGACCAGTAAGACTCATGAAGCAGCAGCTATATTTCATGGCACCATTTTGGGTCATGAAATTCCATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR GCA 90 bp AAGAACTACAGCACTTACTCCCCTACCCCCAAATGTTTGCTTCTTTaGATTTCACAATTCATATGCATATCTGGACGACAGTTAACCTCC +
Preference number: 1 (lower is better)
Translates to: KNYSTYSPTPKCLLL*ISQFICISGRQLTS
Trigger: GGAGGTTAACTGTCGTCCAGATATGCATATGAATTGTGAAATGCAAAGAAGCAAACATTTGGGGGTAGGGGAGTAAGTGCTGTAGTTCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR GCA 90 bp CGGTTATTGGAAACTTTTAGCGGGTGTCCATCCAAAATAAGTCATTaGTACAATTCACTATGTGACATTTCATCAAGCCCACTGGAGACA +
Preference number: 1 (lower is better)
Translates to: RLLETFSGCPSKISH*YNSLCDISSSPLET
Trigger: TGTCTCCAGTGGGCTTGATGAAATGTCACATAGTGAATTGTAGCAATGACTTATTTTGGATGGACACCCGCTAAAAGTTTCCAATAACCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CCA 90 bp CCTCAACACCAATCTATTAAGATGCCATCTGAAAGCACATGGAAGTaGCTTAGAATCTATGCCGCTGAGAAAGTTAGGAAATTCAAAGTT +
Preference number: 1 (lower is better)
Translates to: PQHQSIKMPSESTWK*LRIYAAEKVRKFKV
Trigger: AACTTTGAATTTCCTAACTTTCTCAGCGGCATAGATTCTAAGCCACTTCCATGTGCTTTCAGATGGCATCTTAATAGATTGGTGTTGAGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR TCA 90 bp GATAAAGAAGCAACGCTGTTAGAACAAGCATATAGCCTCCCGGTTTaGAATGCTTTGAAAACAAACCATAGCCATAACACAGATAACACA +
Preference number: 1 (lower is better)
Translates to: DKEATLLEQAYSLPV*NALKTNHSHNTDNT
Trigger: TGTGTTATCTGTGTTATGGCTATGGTTTGTTTTCAAAGCATTTCAAACCGGGAGGCTATATGCTTGTTCTAACAGCGTTGCTTCTTTATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR GCA 90 bp GGTTACTTATTACTTGTGCCCTCCCTATATCTAAATCGTTCTAATTaGTTCTGTTTAAGAAGATTCAGTGACACACTGTGGTCCTGTGTT +
Preference number: 1 (lower is better)
Translates to: GYLLLVPSLYLNRSN*FCLRRFSDTLWSCV
Trigger: AACACAGGACCACAGTGTGTCACTGAATCTTCTTAAACAGAAGCAATTAGAACGATTTAGATATAGGGAGGGCACAAGTAATAAGTAACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR TCA 90 bp GAGGACAGGATACCAGTAGGAAGGGCTGTTTCAAGTGGGGGTGGTGAGGCTGGGGGACTGGGACATGCTTaGGCTACAGGCAACAACGAG +
Preference number: 2 (lower is better)
Translates to: EDRIPVGRAVSSGGGEAGGLGHA*ATGNNE
Trigger: CTCGTTGTTGCCTGTAGCTCAAGCATGTCCCAGTCC...CCCAGCCTCACCACCCCCACTTGAAACAGCCCTTCCTACTGGTATCCTGTCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CAA 90 bp AGACAACGAAGCTGGTCCCAGGACCACGCGCTAAGAACCACTAGCTaGTTCTTTCACTGCCCTCCTACTCAGGCTGAGGAGCAGGGGGAT +
Preference number: 2 (lower is better)
Translates to: RQRSWSQDHALRTTS*FFHCPPTQAEEQGD
Trigger: ATCCCCCTGCTCCTCAGCCTGAGTAGGAGGGCAGTGAAAGAACAAGCTAGTGGTTCTTAGCGCGTGGTCCTGGGACCAGCTTCGTTGTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR TCA 90 bp CTGAAAGGCAGCACGGCAGCACTGTCTTTGCACGGTCCATTGTGTGGTCTGCACGCACAGTCTCCTCCCTaGCAAGGTGGATGGCTCTTT +
Preference number: 2 (lower is better)
Translates to: LKGSTAALSLHGPLCGLHAQSPP*QGGWLF
Trigger: AAAGAGCCATCCACCTTGTCAGGGAGGAGACTGTGC...GTGCAGACCACACAATGGACCGTGCAAAGACAGTGCTGCCGTGCTGCCTTTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CAA 90 bp TGGATTGTACCCCTGGAGCTGAAAGGCAGCACGGCAGCACTGTCTTaGCACGGTCCATTGTGTGGTCTGCACAGTGATGTGCCAAGAAGG +
Preference number: 2 (lower is better)
Translates to: WIVPLELKGSTAALS*HGPLCGLHSDVPRR
Trigger: CCTTCTTGGCACATCACTGTGCAGACCACACAATGGACCGTGCAAAGACAGTGCTGCCGTGCTGCCTTTCAGCTCCAGGGGTACAATCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR GCA 90 bp ACCACATTTCTAGCACATTTCCAGACAACGAAGCTGGTCCCAGGACCACGCGCTCGGCAGCACTGTCTTTaGACGGTCCATTGTGTGGTC +
Preference number: 2 (lower is better)
Translates to: TTFLAHFQTTKLVPGPRARQHCL*TVHCVV
Trigger: GACCACACAATGGACCGTGCAAAGACAGTGCTGCCG...AGCGCGTGGTCCTGGGACCAGCTTCGTTGTCTGGAAATGTGCTAGAAATGTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CAA 90 bp ACCAAAATCCTGGAGGTGGGTGCAAGAGCAGGGACTGGGACATGCTaGAGCTACAGGCAACAACGAGCCTCTCTGATGTCTTCTCCTAAG +
Preference number: 2 (lower is better)
Translates to: TKILEVGARAGTGTC*SYRQQRASLMSSPK
Trigger: CTTAGGAGAAGACATCAGAGAGGCTCGTTGTTGCCTGTAGCTCAAGCATGTCCCAGTCCCTGCTCTTGCACCCACCTCCAGGATTTTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CCA 90 bp GGTTTCCACAAGGTGGGGTCAAAGGGAGGGAGAAATCTAGATCCTACTAGCCAGCCAGATGCTTCTGTCTaGGACACCCCTGGTATTGGG +
Preference number: 2 (lower is better)
Translates to: GFHKVGSKGGRNLDPTSQPDASV*DTPGIG
Trigger: CCCAATACCAGGGGTGTCCCAGACAGAAGCATCTGG...CTGGCTAGTAGGATCTAGATTTCTCCCTCCCTTTGACCCCACCTTGTGGAAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000488816.1
3UTR-3UTR CCA 90 bp GTTTCCATGACATCTCCCTGCCCTAGCGTAGCTCCGCTTTCTCACCAATGTCTGGACCCCAGAATTCCTTaGGTAGCTGCCAGATGCTTC +
Preference number: 2 (lower is better)
Translates to: VSMTSPCPSVAPLSHQCLDPRIP*VAARCF
Trigger: GAAGCATCTGGCAGCTACCCAAGGAATTCTGGGGTC...CAGACATTGGTGAGAAAGCGGAGCTACGCTAGGGCAGGGAGATGTCATGGAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488816.1
3UTR-3UTR TCA 90 bp AGGTTTCTAGGCAGGGTTTGGAACATTAAAGTAACAGTATCTACCACCACAGTCTCTGGCCCCAACTGGTaGGCTGGAGGCCATGGCAAC +
Preference number: 2 (lower is better)
Translates to: RFLGRVWNIKVTVSTTTVSGPNW*AGGHGN
Trigger: GTTGCCATGGCCTCCAGCTCACCAGTTGGGGCCAGA...GACTGTGGTGGTAGATACTGTTACTTTAATGTTCCAAACCCTGCCTAGAAACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR TCA 90 bp AAAGGCAAAATTCCTCAAACACATGTCACAGTGTGGGAACTGAGAGCCATTCCCTTCAAGTGGGGGTGGTaGGGCTGGGATCATGGGACA +
Preference number: 2 (lower is better)
Translates to: KGKIPQTHVTVWELRAIPFKWGW*GWDHGT
Trigger: TGTCCCATGATCCCAGCCTCACCACCCCCACTTGAA...GGGAATGGCTCTCAGTTCCCACACTGTGACATGTGTTTGAGGAATTTTGCCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR GCA 90 bp GGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTTCATGCCGAGGGGATGCATGTaGACATCTGGCCCCAACTGG +
Preference number: 2 (lower is better)
Translates to: GQNRPSTSTIIRESNTFMPRGCM*TSGPNW
Trigger: CCAGTTGGGGCCAGATGTGCACATGCATCCCCTCGG...CATGAAGGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CCA 90 bp ATCCTACTAGCCAGGAGACAGTCATTTCGCAGCAGTGGAGTCAAACACTATCCTGGACACCCCTGGTATTaGGAGGGCATAGATCAGCCT +
Preference number: 2 (lower is better)
Translates to: ILLARRQSFRSSGVKHYPGHPWY*EGIDQP
Trigger: AGGCTGATCTATGCCCTCCCAATACCAGGGGTGTCC...AGGATAGTGTTTGACTCCACTGCTGCGAAATGACTGTCTCCTGGCTAGTAGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488816.1
3UTR-3UTR TCA 90 bp AGGTTTCTAGGCAGGGTTTGGAACATTAAAGTAACAGTATCTACCACCACAGTCGTGTGGTCTGCACAGTaGTGTGCCAAGAAGGGGCTC +
Preference number: 2 (lower is better)
Translates to: RFLGRVWNIKVTVSTTTVVWSAQ*CAKKGL
Trigger: GAGCCCCTTCTTGGCACATCACTGTGCAGACCACAC...GACTGTGGTGGTAGATACTGTTACTTTAATGTTCCAAACCCTGCCTAGAAACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR GCA 90 bp CATGCAACCACTCAAATAACAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGATCTTCATGCAGTCCTTaGACAGTCTCCTCCCTGACA +
Preference number: 2 (lower is better)
Translates to: HATTQITREPGVFQPCARSSCSP*TVSSLT
Trigger: TGTCAGGGAGGAGACTGTGCAAGGACTGCATGAAGA...TCTTGCACATGGCTGAAACACCCCTGGCTCTCTTGTTATTTGAGTGGTTGCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR GCA 90 bp CATGCAACCACTCAAATAACAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAGTCTGCACAGTGATGTaGCAAGAAGGGGCTCATGAT +
Preference number: 2 (lower is better)
Translates to: HATTQITREPGVFQPCARVCTVM*QEGAHD
Trigger: ATCATGAGCCCCTTCTTGGCACATCACTGTGCAGAC...TCTTGCACATGGCTGAAACACCCCTGGCTCTCTTGTTATTTGAGTGGTTGCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR GCA 90 bp GTTTCCATGACATCTCCCTGCCCTAGCGTAGCTCCGCTTTCTCACCAATGTCTGTGTAAACTTGGATTCTaGAGGACCCCAGAATTCCTT +
Preference number: 2 (lower is better)
Translates to: VSMTSPCPSVAPLSHQCLCKLGF*RTPEFL
Trigger: AAGGAATTCTGGGGTCCTGCAGAATCCAAGTTTACA...CAGACATTGGTGAGAAAGCGGAGCTACGCTAGGGCAGGGAGATGTCATGGAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488816.1
3UTR-3UTR CCA 90 bp GAAATTCGGTTATTGGAAACTTTTAGCGGGTGTCCATCCAAAATAAGTCATTGCCCCCAACTGGTGAGCTaGAGGCCATGGCAACCAGGC +
Preference number: 2 (lower is better)
Translates to: EIRLLETFSGCPSKISHCPQLVS*RPWQPG
Trigger: GCCTGGTTGCCATGGCCTCCAGCTCACCAGTTGGGG...GCAATGACTTATTTTGGATGGACACCCGCTAAAAGTTTCCAATAACCGAATTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CCA 90 bp CATGCAACCACTCAAATAACAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGACAGAGAGCTGCTTCTTaGTCTATCCCCTGGGTTACT +
Preference number: 2 (lower is better)
Translates to: HATTQITREPGVFQPCARQRAAS*SIPWVT
Trigger: AGTAACCCAGGGGATAGACCAAGAAGCAGCTCTCTG...TCTTGCACATGGCTGAAACACCCCTGGCTCTCTTGTTATTTGAGTGGTTGCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CCA 90 bp AGGTGGCCTGAAGGACCCGGACAGCGAAGAGTTGAGGTTTCCATGACATCTCCCAGCAAAACCTTGTTCTaGTGGTTTGTAAACTTGGAT +
Preference number: 2 (lower is better)
Translates to: RWPEGPGQRRVEVSMTSPSKTLF*WFVNLD
Trigger: ATCCAAGTTTACAAACCACCAGAACAAGGTTTTGCT...GGGAGATGTCATGGAAACCTCAACTCTTCGCTGTCCGGGTCCTTCAGGCCACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488816.1
3UTR-3UTR TCA 90 bp GAAATTCGGTTATTGGAAACTTTTAGCGGGTGTCCATCCAAAATAAGTCATTGCCCCTCCTACTCAGGCTaGGGAGCAGGGGGATGGATT +
Preference number: 2 (lower is better)
Translates to: EIRLLETFSGCPSKISHCPSYSG*GAGGWI
Trigger: AATCCATCCCCCTGCTCCTCAGCCTGAGTAGGAGGG...GCAATGACTTATTTTGGATGGACACCCGCTAAAAGTTTCCAATAACCGAATTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR TCA 90 bp GGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTTCATGGAACCCGGAAGAGAGTaGCCCATACACCAAACCCAA +
Preference number: 2 (lower is better)
Translates to: GQNRPSTSTIIRESNTFMEPGRE*PIHQTQ
Trigger: TTGGGTTTGGTGTATGGGTCACTCTCTTCCGGGTTC...CATGAAGGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR GCA 90 bp CAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAAAATGCTTAAAGGCAAAAGCAGGGACTGGGACATaGTTGAGCTACAGGCAACAA +
Preference number: 2 (lower is better)
Translates to: QESQGCFSHVQEKCLKAKAGTGT*LSYRQQ
Trigger: TTGTTGCCTGTAGCTCAAGCATGTCCCAGTCCCTGC...TTTTGCCTTTAAGCATTTTTCTTGCACATGGCTGAAACACCCCTGGCTCTCTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CCA 90 bp GTACTACGCAAGTGGTTGAAGAACTTGTTCTTTTTGACTAACAATACTGACACTGTGAGCTGGAGGCCATaGCAACCAGGCTGCAGGAAG +
Preference number: 2 (lower is better)
Translates to: VLRKWLKNLFFLTNNTDTVSWRP*QPGCRK
Trigger: CTTCCTGCAGCCTGGTTGCCATGGCCTCCAGCTCAC...AGTGTCAGTATTGTTAGTCAAAAAGAACAAGTTCTTCAACCACTTGCGTAGTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CCA 90 bp AGGTTTCTAGGCAGGGTTTGGAACATTAAAGTAACAGTATCTACCACCACAGTCCCTTCATGGGTGCCATaGCTGCCATACTGTAGAACC +
Preference number: 2 (lower is better)
Translates to: RFLGRVWNIKVTVSTTTVPSWVP*LPYCRT
Trigger: GGTTCTACAGTATGGCAGCCATGGCACCCATGAAGG...GACTGTGGTGGTAGATACTGTTACTTTAATGTTCCAAACCCTGCCTAGAAACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CCA 90 bp AGGTTTCTAGGCAGGGTTTGGAACATTAAAGTAACAGTATCTACCACCACAGTCTGCAAGAGCAGGGACTaGGACATGCTTGAGCTACAG +
Preference number: 2 (lower is better)
Translates to: RFLGRVWNIKVTVSTTTVCKSRD*DMLELQ
Trigger: CTGTAGCTCAAGCATGTCCCAGTCCCTGCTCTTGCA...GACTGTGGTGGTAGATACTGTTACTTTAATGTTCCAAACCCTGCCTAGAAACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CCA 90 bp AAAGGCAAAATTCCTCAAACACATGTCACAGTGTGGGAACTGAGAGCCATTCCCACTGGTCTTAACAAGTaGGGACAGGAGATACGGGAA +
Preference number: 2 (lower is better)
Translates to: KGKIPQTHVTVWELRAIPTGLNK*GQEIRE
Trigger: TTCCCGTATCTCCTGTCCCCACTTGTTAAGACCAGT...GGGAATGGCTCTCAGTTCCCACACTGTGACATGTGTTTGAGGAATTTTGCCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR TCA 90 bp CATGCAACCACTCAAATAACAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAATCCATCTCAAGCATaGACCTACACTATGCCTGTT +
Preference number: 2 (lower is better)
Translates to: HATTQITREPGVFQPCARNPSQA*TYTMPV
Trigger: AACAGGCATAGTGTAGGTTCATGCTTGAGATGGATT...TCTTGCACATGGCTGAAACACCCCTGGCTCTCTTGTTATTTGAGTGGTTGCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR GCA 90 bp AGGTTTCTAGGCAGGGTTTGGAACATTAAAGTAACAGTATCTACCACCACAGTCAGCTTGTTCTTTCACTaGCCTCCTACTCAGGCTGAG +
Preference number: 2 (lower is better)
Translates to: RFLGRVWNIKVTVSTTTVSLFFH*PPTQAE
Trigger: CTCAGCCTGAGTAGGAGGGCAGTGAAAGAACAAGCT...GACTGTGGTGGTAGATACTGTTACTTTAATGTTCCAAACCCTGCCTAGAAACCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR TCA 90 bp CAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAAAATGCTTAAAGGCAAAACCCAAAATGGTGCCATaGAATATAGCTGCTGCTTCA +
Preference number: 2 (lower is better)
Translates to: QESQGCFSHVQEKCLKAKPKMVP*NIAAAS
Trigger: TGAAGCAGCAGCTATATTTCATGGCACCATTTTGGG...TTTTGCCTTTAAGCATTTTTCTTGCACATGGCTGAAACACCCCTGGCTCTCTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CCA 90 bp AGGTTTCTAGGCAGGGTTTGGAACATTAAAGTAACAGTATCTACCACCACAGTCTTCCAACTGGGAAACTaGAACCTGGTCACTGAGTTC +
Preference number: 2 (lower is better)
Translates to: RFLGRVWNIKVTVSTTTVFQLGN*NLVTEF
Trigger: GAACTCAGTGACCAGGTTCCAGTTTCCCAGTTGGAA...GACTGTGGTGGTAGATACTGTTACTTTAATGTTCCAAACCCTGCCTAGAAACCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR TCA 90 bp AAAGGCAAAATTCCTCAAACACATGTCACAGTGTGGGAACTGAGAGCCATTCCCTATAGCCTCCCGGTTTaGAATGCTTTGAAAACAAAC +
Preference number: 2 (lower is better)
Translates to: KGKIPQTHVTVWELRAIPYSLPV*NALKTN
Trigger: GTTTGTTTTCAAAGCATTTCAAACCGGGAGGCTATA...GGGAATGGCTCTCAGTTCCCACACTGTGACATGTGTTTGAGGAATTTTGCCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CCA 90 bp GTACTACGCAAGTGGTTGAAGAACTTGTTCTTTTTGACTAACAATACTGACACTCCCAAACCAAAATCCTaGAGGTGGGTGCAAGAGCAG +
Preference number: 2 (lower is better)
Translates to: VLRKWLKNLFFLTNNTDTPKPKS*RWVQEQ
Trigger: CTGCTCTTGCACCCACCTCCAGGATTTTGGTTTGGG...AGTGTCAGTATTGTTAGTCAAAAAGAACAAGTTCTTCAACCACTTGCGTAGTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CAA 90 bp GGAAAGGCATCTGTTACCTCCAAAGGAGGGCCACTCATTACAGTTTaGTGTAATATTACAGTAAGGTCTGCCAAGAAGGAATTCAAGGAA +
Preference number: 2 (lower is better)
Translates to: GKASVTSKGGPLITV*CNITVRSAKKEFKE
Trigger: TTCCTTGAATTCCTTCTTGGCAGACCTTACTGTAATATTACACAAAACTGTAATGAGTGGCCCTCCTTTGGAGGTAACAGATGCCTTTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR GCA 90 bp CAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAAAATGCTTAAAGGCAAAACATGAACCTACACTATaGCTGTTTCTGTACTCTTGT +
Preference number: 2 (lower is better)
Translates to: QESQGCFSHVQEKCLKAKHEPTL*LFLYSC
Trigger: ACAAGAGTACAGAAACAGGCATAGTGTAGGTTCATG...TTTTGCCTTTAAGCATTTTTCTTGCACATGGCTGAAACACCCCTGGCTCTCTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CCA 90 bp GAAATTCGGTTATTGGAAACTTTTAGCGGGTGTCCATCCAAAATAAGTCATTGCTCCTCCCTGACAAGGTaGATGGCTCTTTGTCATTAC +
Preference number: 2 (lower is better)
Translates to: EIRLLETFSGCPSKISHCSSLTR*MALCHY
Trigger: GTAATGACAAAGAGCCATCCACCTTGTCAGGGAGGA...GCAATGACTTATTTTGGATGGACACCCGCTAAAAGTTTCCAATAACCGAATTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CCA 90 bp CAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAAAATGCTTAAAGGCAAAAAAGTTAGTATTCTGTTaGGCTCCCTCTTCTCCTATA +
Preference number: 2 (lower is better)
Translates to: QESQGCFSHVQEKCLKAKKLVFC*APSSPI
Trigger: TATAGGAGAAGAGGGAGCCCAACAGAATACTAACTT...TTTTGCCTTTAAGCATTTTTCTTGCACATGGCTGAAACACCCCTGGCTCTCTTG
42% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CAA 90 bp AAAGAACTACAGCACTTACTCCCCTACCCCCAAATGTTTGCTTCTTaGCATTTCACAATTCATATGCATATCTGGACGACAGTTAACCTC +
Preference number: 2 (lower is better)
Translates to: KELQHLLPYPQMFAS*HFTIHMHIWTTVNL
Trigger: GAGGTTAACTGTCGTCCAGATATGCATATGAATTGTGAAATGCAAAGAAGCAAACATTTGGGGGTAGGGGAGTAAGTGCTGTAGTTCTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR TCA 90 bp GTACTACGCAAGTGGTTGAAGAACTTGTTCTTTTTGACTAACAATACTGACACTTCCCATCTTGAAATTTaGACTGCCTGCGAAGCCTTC +
Preference number: 2 (lower is better)
Translates to: VLRKWLKNLFFLTNNTDTSHLEI*TACEAF
Trigger: GAAGGCTTCGCAGGCAGTTCAAATTTCAAGATGGGA...AGTGTCAGTATTGTTAGTCAAAAAGAACAAGTTCTTCAACCACTTGCGTAGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CCA 90 bp GTACTACGCAAGTGGTTGAAGAACTTGTTCTTTTTGACTAACAATACTGACACTCTCTTGTCACAGGTTTaGCCACTATGTCCTCAACTC +
Preference number: 2 (lower is better)
Translates to: VLRKWLKNLFFLTNNTDTLLSQV*PLCPQL
Trigger: GAGTTGAGGACATAGTGGCCAAACCTGTGACAAGAG...AGTGTCAGTATTGTTAGTCAAAAAGAACAAGTTCTTCAACCACTTGCGTAGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR GCA 90 bp AGGTTTCTAGGCAGGGTTTGGAACATTAAAGTAACAGTATCTACCACCACAGTCATGAAATATAGCTGCTaGTTCATGAGTCTTACTGGT +
Preference number: 2 (lower is better)
Translates to: RFLGRVWNIKVTVSTTTVMKYSC*FMSLTG
Trigger: ACCAGTAAGACTCATGAAGCAGCAGCTATATTTCAT...GACTGTGGTGGTAGATACTGTTACTTTAATGTTCCAAACCCTGCCTAGAAACCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CAA 90 bp TCAAATCATATCAATGACTTCTCCAAGCATTGGAGTCACAGGGACTaGAATATAATTTGGGGTACTACGCAAGTGGTTGAAGAACTTGTT +
Preference number: 2 (lower is better)
Translates to: SNHINDFSKHWSHRD*NIIWGTTQVVEELV
Trigger: AACAAGTTCTTCAACCACTTGCGTAGTACCCCAAATTATATTCAAGTCCCTGTGACTCCAATGCTTGGAGAAGTCATTGATATGATTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR TCA 72 bp CCGAGGGGATGCATGTGCACATCTGGCCCCAACTGGTaGGCTGGAGGCCATGGCAACCAGGCTGCAGGAAGC +
Preference number: 3 (lower is better)
Translates to: PRGCMCTSGPNW*AGGHGNQAAGS
Trigger: GCTTCCTGCAGCCTGGTTGCCATGGCCTCCAGCTCACCAGTTGGGGCCAGATGTGCACATGCATCCCCTCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR TCA 72 bp GCTGAGGAGCAGGGGGATGGATTGTACCCCTGGAGCTaGAAGGCAGCACGGCAGCACTGTCTTTGCACGGTC +
Preference number: 3 (lower is better)
Translates to: AEEQGDGLYPWS*KAARQHCLCTV
Trigger: GACCGTGCAAAGACAGTGCTGCCGTGCTGCCTTTCAGCTCCAGGGGTACAATCCATCCCCCTGCTCCTCAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CCA 72 bp GGGCTGTTTCAAGTGGGGGTGGTGAGGCTGGGATCATaGGACAGGAACAGGTTTCTAGGCAGGGTTTGGAAC +
Preference number: 3 (lower is better)
Translates to: GLFQVGVVRLGS*DRNRFLGRVWN
Trigger: GTTCCAAACCCTGCCTAGAAACCTGTTCCTGTCCCATGATCCCAGCCTCACCACCCCCACTTGAAACAGCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CCA 72 bp TGGGTAGCTGCCAGATGCTTCTGTCTGGGACACCCCTaGTATTGGGAGGGCATAGATCAGCCTCCTCTGGAT +
Preference number: 3 (lower is better)
Translates to: WVAARCFCLGHP*YWEGIDQPPLD
Trigger: ATCCAGAGGAGGCTGATCTATGCCCTCCCAATACCAGGGGTGTCCCAGACAGAAGCATCTGGCAGCTACCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488816.1
3UTR GCA 72 bp CGGCAGCACTGTCTTTGCACGGTCCATTGTGTGGTCTaGACAGTGATGTGCCAAGAAGGGGCTCATGATCAG +
Preference number: 3 (lower is better)
Translates to: RQHCLCTVHCVV*TVMCQEGAHDQ
Trigger: CTGATCATGAGCCCCTTCTTGGCACATCACTGTGCAGACCACACAATGGACCGTGCAAAGACAGTGCTGCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CCA 72 bp GCTCCGCTTTCTCACCAATGTCTGCCAGTAGACAGCTaGGTTTCCACAAGGTGGGGTCAAAGGGAGGGAGAA +
Preference number: 3 (lower is better)
Translates to: APLSHQCLPVDS*VSTRWGQREGE
Trigger: TTCTCCCTCCCTTTGACCCCACCTTGTGGAAACCCAGCTGTCTACTGGCAGACATTGGTGAGAAAGCGGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488816.1
3UTR-3UTR CAA 90 bp TTCCACAAGGTGGGGTCAAAGGGAGGGAGAAATCTAGATCCTACTAGCCAGGAGTGGTGGTTTGTAAACTaGGATTCTGCAGGACCCCAG +
Preference number: 3 (lower is better)
Translates to: FHKVGSKGGRNLDPTSQEWWFVN*DSAGPQ
Trigger: CTGGGGTCCTGCAGAATCCAAGTTTACAAACCACCA...CTCCTGGCTAGTAGGATCTAGATTTCTCCCTCCCTTTGACCCCACCTTGTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000488816.1
3UTR CCA 72 bp ACTGTTTGCTCTAAGAGAGGCGCCTACAGTGGGCCATaGAAATGCACATTCTACCAGGTACTCGGTTTCCAC +
Preference number: 3 (lower is better)
Translates to: TVCSKRGAYSGP*KCTFYQVLGFH
Trigger: GTGGAAACCGAGTACCTGGTAGAATGTGCATTTCCATGGCCCACTGTAGGCGCCTCTCTTAGAGCAAACAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR TCA 72 bp ACTGTCTTTGCACGGTCCATTGTGTGGTCTGCACAGTaGTGTGCCAAGAAGGGGCTCATGATCAGTTTCTTC +
Preference number: 3 (lower is better)
Translates to: TVFARSIVWSAQ*CAKKGLMISFF
Trigger: GAAGAAACTGATCATGAGCCCCTTCTTGGCACATCACTGTGCAGACCACACAATGGACCGTGCAAAGACAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR TCA 72 bp ACAGTGGGTGACATTGTAAAGGGAAGGCTCCCATCTTaGAATTTGAACTGCCTGCGAAGCCTTCCAACTGGG +
Preference number: 3 (lower is better)
Translates to: TVGDIVKGRLPS*NLNCLRSLPTG
Trigger: CCCAGTTGGAAGGCTTCGCAGGCAGTTCAAATTTCAAGATGGGAGCCTTCCCTTTACAATGTCACCCACTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR GCA 72 bp AATGCACATTCTACCAGGTACTCGGTTTCCACTCTGTaGAGCCCACCCCTATTGTATAAGCAGAGTCAGCTC +
Preference number: 3 (lower is better)
Translates to: NAHSTRYSVSTL*SPPLLYKQSQL
Trigger: GAGCTGACTCTGCTTATACAATAGGGGTGGGCTGCACAGAGTGGAAACCGAGTACCTGGTAGAATGTGCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CCA 72 bp CCGGCATCTATATTCGCAGCTCTCTTGTCACAGGTTTaGCCACTATGTCCTCAACTCCAACGGTACAAACCT +
Preference number: 3 (lower is better)
Translates to: PASIFAALLSQV*PLCPQLQRYKP
Trigger: AGGTTTGTACCGTTGGAGTTGAGGACATAGTGGCCAAACCTGTGACAAGAGAGCTGCGAATATAGATGCCGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CCA 72 bp CTGCAGGAAGCACTGGGGAGTGTTCTATTAGTCCAGTaGTTCTCAAACGCGAGCATGTTTCAGAATCACCCA +
Preference number: 3 (lower is better)
Translates to: LQEALGSVLLVQ*FSNASMFQNHP
Trigger: TGGGTGATTCTGAAACATGCTCGCGTTTGAGAACCACTGGACTAATAGAACACTCCCCAGTGCTTCCTGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CAA 90 bp AAAGGCAAAATTCCTCAAACACATGTCACAGTGTGGGAACTGAGAGCCATTCCCTGCAGCCCACCCCTATaGTATAAGCAGAGTCAGCTC +
Preference number: 3 (lower is better)
Translates to: KGKIPQTHVTVWELRAIPCSPPL*YKQSQL
Trigger: GAGCTGACTCTGCTTATACAATAGGGGTGGGCTGCA...GGGAATGGCTCTCAGTTCCCACACTGTGACATGTGTTTGAGGAATTTTGCCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR TCA 72 bp TGCCATGGCTGCCATACTGTAGAACCCGGAAGAGAGTaGCCCATACACCAAACCCAAGTGTTTTACGAGTTT +
Preference number: 3 (lower is better)
Translates to: CHGCHTVEPGRE*PIHQTQVFYEF
Trigger: AAACTCGTAAAACACTTGGGTTTGGTGTATGGGTCACTCTCTTCCGGGTTCTACAGTATGGCAGCCATGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CCA 72 bp AGCTGCTGCTTCATGAGTCTTACTGGTCTTAACAAGTaGGGACAGGAGATACGGGAAAGGATAGAACGGGAT +
Preference number: 3 (lower is better)
Translates to: SCCFMSLTGLNK*GQEIRERIERD
Trigger: ATCCCGTTCTATCCTTTCCCGTATCTCCTGTCCCCACTTGTTAAGACCAGTAAGACTCATGAAGCAGCAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CAA 90 bp GGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTTCATGTTCTTCATGCAGTCCTaGCACAGTCTCCTCCCTGAC +
Preference number: 3 (lower is better)
Translates to: GQNRPSTSTIIRESNTFMFFMQS*HSLLPD
Trigger: GTCAGGGAGGAGACTGTGCAAGGACTGCATGAAGAA...CATGAAGGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CAA 90 bp CATGCAACCACTCAAATAACAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGACTAAGAACCACTAGCTaGTTCTTTCACTGCCCTCCT +
Preference number: 3 (lower is better)
Translates to: HATTQITREPGVFQPCARLRTTS*FFHCPP
Trigger: AGGAGGGCAGTGAAAGAACAAGCTAGTGGTTCTTAG...TCTTGCACATGGCTGAAACACCCCTGGCTCTCTTGTTATTTGAGTGGTTGCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CAA 90 bp AGGTTTCTAGGCAGGGTTTGGAACATTAAAGTAACAGTATCTACCACCACAGTCGGGACTGGGACATGCTaGAGCTACAGGCAACAACGA +
Preference number: 3 (lower is better)
Translates to: RFLGRVWNIKVTVSTTTVGTGTC*SYRQQR
Trigger: TCGTTGTTGCCTGTAGCTCAAGCATGTCCCAGTCCC...GACTGTGGTGGTAGATACTGTTACTTTAATGTTCCAAACCCTGCCTAGAAACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CAA 90 bp CAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAAAATGCTTAAAGGCAAAATCTTTGCACGGTCCATaGTGTGGTCTGCACAGTGAT +
Preference number: 3 (lower is better)
Translates to: QESQGCFSHVQEKCLKAKSLHGP*CGLHSD
Trigger: ATCACTGTGCAGACCACACAATGGACCGTGCAAAGA...TTTTGCCTTTAAGCATTTTTCTTGCACATGGCTGAAACACCCCTGGCTCTCTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR TCA 72 bp CTTCCCTTATGTGTTCTGCCCTCGCCAAGCTCTTTCTaGAATCAGAGGCCACTGACATGCATAACAAACCAT +
Preference number: 3 (lower is better)
Translates to: LPLCVLPSPSSF*NQRPLTCITNH
Trigger: ATGGTTTGTTATGCATGTCAGTGGCCTCTGATTTCAGAAAGAGCTTGGCGAGGGCAGAACACATAAGGGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR TCA 72 bp AGAAGGAATTCAAGGAAATTGGGAATGACGACACTGTaGTCCCAGGCCACTCTCTTGAGCAGAGGTTTCCTT +
Preference number: 3 (lower is better)
Translates to: RRNSRKLGMTTL*SQATLLSRGFL
Trigger: AAGGAAACCTCTGCTCAAGAGAGTGGCCTGGGATCACAGTGTCGTCATTCCCAATTTCCTTGAATTCCTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CCA 72 bp GTGGGGACAGGAGATACGGGAAAGGATAGAACGGGATaGAATAAACCACTAATCCATCTCAAGCATGAACCT +
Preference number: 3 (lower is better)
Translates to: VGTGDTGKDRTG*NKPLIHLKHEP
Trigger: AGGTTCATGCTTGAGATGGATTAGTGGTTTATTCCATCCCGTTCTATCCTTTCCCGTATCTCCTGTCCCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CAA 90 bp AAGGTTGGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTCTCTTGTCACAGGTTaGGCCACTATGTCCTCAACT +
Preference number: 3 (lower is better)
Translates to: KVGQNRPSTSTIIRESNTSLVTG*ATMSST
Trigger: AGTTGAGGACATAGTGGCCAAACCTGTGACAAGAGA...GGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCCAACCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CAA 90 bp GAAATTCGGTTATTGGAAACTTTTAGCGGGTGTCCATCCAAAATAAGTCATTGCACGGCAGCACTGTCTTaGCACGGTCCATTGTGTGGT +
Preference number: 3 (lower is better)
Translates to: EIRLLETFSGCPSKISHCTAALS*HGPLCG
Trigger: ACCACACAATGGACCGTGCAAAGACAGTGCTGCCGT...GCAATGACTTATTTTGGATGGACACCCGCTAAAAGTTTCCAATAACCGAATTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CAA 90 bp AGGTTTCTAGGCAGGGTTTGGAACATTAAAGTAACAGTATCTACCACCACAGTCAAGTGTTTTACGAGTTaGAGGGAGTCCGAGGGGATG +
Preference number: 3 (lower is better)
Translates to: RFLGRVWNIKVTVSTTTVKCFTS*RESEGM
Trigger: CATCCCCTCGGACTCCCTCAAACTCGTAAAACACTT...GACTGTGGTGGTAGATACTGTTACTTTAATGTTCCAAACCCTGCCTAGAAACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CCA 72 bp CTTTTTAATTCCAGACTCTTCCAGAGAGCTGCTTCTTaGTCTATCCCCTGGGTTACTTATTACTTGTGCCCT +
Preference number: 3 (lower is better)
Translates to: LFNSRLFQRAAS*SIPWVTYYLCP
Trigger: AGGGCACAAGTAATAAGTAACCCAGGGGATAGACCAAGAAGCAGCTCTCTGGAAGAGTCTGGAATTAAAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR TCA 72 bp ACAGTCATTTCGCAGCAGTGGAGTCAAACACTATCCTaGAGCAAAACCTTGTTCTGGTGGTTTGTAAACTTG +
Preference number: 3 (lower is better)
Translates to: TVISQQWSQTLS*SKTLFWWFVNL
Trigger: CAAGTTTACAAACCACCAGAACAAGGTTTTGCTTCAGGATAGTGTTTGACTCCACTGCTGCGAAATGACTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488816.1
3UTR GCA 72 bp TTCATGACCCAAAATGGTGCCATGAAATATAGCTGCTaGTTCATGAGTCTTACTGGTCTTAACAAGTGGGGA +
Preference number: 3 (lower is better)
Translates to: FMTQNGAMKYSC*FMSLTGLNKWG
Trigger: TCCCCACTTGTTAAGACCAGTAAGACTCATGAAGCAGCAGCTATATTTCATGGCACCATTTTGGGTCATGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CCA 72 bp CTTAAAGGCAAAATTCCTCAAACACATGTCACAGTGTaGGAACTGAGAGCCATTCCCTCTGTAAATCCTGTT +
Preference number: 3 (lower is better)
Translates to: LKGKIPQTHVTV*ELRAIPSVNPV
Trigger: AACAGGATTTACAGAGGGAATGGCTCTCAGTTCCCACACTGTGACATGTGTTTGAGGAATTTTGCCTTTAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR-3UTR CAA 90 bp CAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAAAATGCTTAAAGGCAAAAAGTGAAATTCGGTTATaGGAAACTTTTAGCGGGTGT +
Preference number: 3 (lower is better)
Translates to: QESQGCFSHVQEKCLKAKSEIRL*ETFSGC
Trigger: ACACCCGCTAAAAGTTTCCAATAACCGAATTTCACT...TTTTGCCTTTAAGCATTTTTCTTGCACATGGCTGAAACACCCCTGGCTCTCTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR TCA 72 bp GCAACGCTGTTAGAACAAGCATATAGCCTCCCGGTTTaGAATGCTTTGAAAACAAACCATAGCCATAACACA +
Preference number: 3 (lower is better)
Translates to: ATLLEQAYSLPV*NALKTNHSHNT
Trigger: TGTGTTATGGCTATGGTTTGTTTTCAAAGCATTTCAAACCGGGAGGCTATATGCTTGTTCTAACAGCGTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CCA 72 bp TCCAAGCATTGGAGTCACAGGGACTTGAATATAATTTaGGGTACTACGCAAGTGGTTGAAGAACTTGTTCTT +
Preference number: 3 (lower is better)
Translates to: SKHWSHRDLNII*GTTQVVEELVL
Trigger: AAGAACAAGTTCTTCAACCACTTGCGTAGTACCCCAAATTATATTCAAGTCCCTGTGACTCCAATGCTTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CCA 72 bp CAACACCAATCTATTAAGATGCCATCTGAAAGCACATaGAAGTGGCTTAGAATCTATGCCGCTGAGAAAGTT +
Preference number: 3 (lower is better)
Translates to: QHQSIKMPSEST*KWLRIYAAEKV
Trigger: AACTTTCTCAGCGGCATAGATTCTAAGCCACTTCCATGTGCTTTCAGATGGCATCTTAATAGATTGGTGTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CCA 72 bp ACACCAACAGCAAACAATTACACTGTGATCCCATTGTaGTCCCCAAGATATATCTTGAGATACTTCAGAGAG +
Preference number: 3 (lower is better)
Translates to: TPTANNYTVIPL*SPRYILRYFRE
Trigger: CTCTCTGAAGTATCTCAAGATATATCTTGGGGACCACAATGGGATCACAGTGTAATTGTTTGCTGTTGGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR TCA 72 bp TTCGGGGGATCTGTCCAATTCACACCTTCTGTTCCCTaGTCAAATACTTTAGGGTCAAACATAAGGTTTTAT +
Preference number: 3 (lower is better)
Translates to: FGGSVQFTPSVP*SNTLGSNIRFY
Trigger: ATAAAACCTTATGTTTGACCCTAAAGTATTTGATCAGGGAACAGAAGGTGTGAATTGGACAGATCCCCCGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp GAGGACAGGATACCAGTAGGAAGGGCTGTTTCAAGTGGGGGTGGTGAGGCTGGGTCTGGCCCCAACTGGTaGGCTGGAGGCCATGGCAAC +
Preference number: 4 (lower is better)
Translates to: EDRIPVGRAVSSGGGEAGSGPNW*AGGHGN
Trigger: GTTGCCATGGCCTCCAGCTCACCAGTTGGGGCCAGA...CCCAGCCTCACCACCCCCACTTGAAACAGCCCTTCCTACTGGTATCCTGTCCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp GCTCATTGGGGAGGTGGCCTGAAGGACCCGGACAGCGAAGAGTTGAGGTTTCCAATTGGGGAGGTGGCCTaGAGGACCCGGACAGCGAAG +
Preference number: 4 (lower is better)
Translates to: AHWGGGLKDPDSEELRFPIGEVA*RTRTAK
Trigger: CTTCGCTGTCCGGGTCCTTCAGGCCACCTCCCCAAT...TGGAAACCTCAACTCTTCGCTGTCCGGGTCCTTCAGGCCACCTCCCCAATGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR GCA 90 bp CTGAAAGGCAGCACGGCAGCACTGTCTTTGCACGGTCCATTGTGTGGTCTGCACGGGAGTCCGAGGGGATaGATGTGCACATCTGGCCCC +
Preference number: 4 (lower is better)
Translates to: LKGSTAALSLHGPLCGLHGSPRG*MCTSGP
Trigger: GGGGCCAGATGTGCACATGCATCCCCTCGGACTCCC...GTGCAGACCACACAATGGACCGTGCAAAGACAGTGCTGCCGTGCTGCCTTTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp TCTGGGACACCCCTGGTATTGGGAGGGCATAGATCAGCCTCCTCTGGATGTGGCTGGGTAGCTGCCAGATaGTTCTGTCTGGGACACCCC +
Preference number: 4 (lower is better)
Translates to: SGTPLVLGGHRSASSGCGWVAAR*FCLGHP
Trigger: GGGGTGTCCCAGACAGAAGCATCTGGCAGCTACCCA...GCCACATCCAGAGGAGGCTGATCTATGCCCTCCCAATACCAGGGGTGTCCCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR GCA 90 bp GAGGACAGGATACCAGTAGGAAGGGCTGTTTCAAGTGGGGGTGGTGAGGCTGGGCATGGGTGCCATGGCTaGCATACTGTAGAACCCGGA +
Preference number: 4 (lower is better)
Translates to: EDRIPVGRAVSSGGGEAGHGCHG*HTVEPG
Trigger: TCCGGGTTCTACAGTATGGCAGCCATGGCACCCATG...CCCAGCCTCACCACCCCCACTTGAAACAGCCCTTCCTACTGGTATCCTGTCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp ACCACATTTCTAGCACATTTCCAGACAACGAAGCTGGTCCCAGGACCACGCGCTCCCCAACTGGTGAGCTaGAGGCCATGGCAACCAGGC +
Preference number: 4 (lower is better)
Translates to: TTFLAHFQTTKLVPGPRAPQLVS*RPWQPG
Trigger: GCCTGGTTGCCATGGCCTCCAGCTCACCAGTTGGGG...AGCGCGTGGTCCTGGGACCAGCTTCGTTGTCTGGAAATGTGCTAGAAATGTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp GCTCATTGGGGAGGTGGCCTGAAGGACCCGGACAGCGAAGAGTTGAGGTTTCCAGGACACCCCTGGTATTaGGAGGGCATAGATCAGCCT +
Preference number: 4 (lower is better)
Translates to: AHWGGGLKDPDSEELRFPGHPWY*EGIDQP
Trigger: AGGCTGATCTATGCCCTCCCAATACCAGGGGTGTCC...TGGAAACCTCAACTCTTCGCTGTCCGGGTCCTTCAGGCCACCTCCCCAATGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR CCA 90 bp AGCGTAGCTCCGCTTTCTCACCAATGTCTGCCAGTAGACAGCTGGGTTTCCACAGGCTCATTGGGGAGGTaGCCTGAAGGACCCGGACAG +
Preference number: 4 (lower is better)
Translates to: SVAPLSHQCLPVDSWVSTGSLGR*PEGPGQ
Trigger: CTGTCCGGGTCCTTCAGGCCACCTCCCCAATGAGCC...TGTGGAAACCCAGCTGTCTACTGGCAGACATTGGTGAGAAAGCGGAGCTACGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488816.1
3UTR CAA 72 bp CCCCTGGAGCTGAAAGGCAGCACGGCAGCACTGTCTTaGCACGGTCCATTGTGTGGTCTGCACAGTGATGTG +
Preference number: 4 (lower is better)
Translates to: PLELKGSTAALS*HGPLCGLHSDV
Trigger: CACATCACTGTGCAGACCACACAATGGACCGTGCAAAGACAGTGCTGCCGTGCTGCCTTTCAGCTCCAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CAA 72 bp AGCTGCCAGATGCTTCTGTCTGGGACACCCCTGGTATaGGGAGGGCATAGATCAGCCTCCTCTGGATGTGGC +
Preference number: 4 (lower is better)
Translates to: SCQMLLSGTPLV*GGHRSASSGCG
Trigger: GCCACATCCAGAGGAGGCTGATCTATGCCCTCCCAATACCAGGGGTGTCCCAGACAGAAGCATCTGGCAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR TCA 90 bp ACCACATTTCTAGCACATTTCCAGACAACGAAGCTGGTCCCAGGACCACGCGCTCCCTCCTACTCAGGCTaGGGAGCAGGGGGATGGATT +
Preference number: 4 (lower is better)
Translates to: TTFLAHFQTTKLVPGPRAPSYSG*GAGGWI
Trigger: AATCCATCCCCCTGCTCCTCAGCCTGAGTAGGAGGG...AGCGCGTGGTCCTGGGACCAGCTTCGTTGTCTGGAAATGTGCTAGAAATGTGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp TCTGGGACACCCCTGGTATTGGGAGGGCATAGATCAGCCTCCTCTGGATGTGGCCGGACAGCGAAGAGTTaGGGTTTCCATGACATCTCC +
Preference number: 4 (lower is better)
Translates to: SGTPLVLGGHRSASSGCGRTAKS*GFHDIS
Trigger: GGAGATGTCATGGAAACCTCAACTCTTCGCTGTCCG...GCCACATCCAGAGGAGGCTGATCTATGCCCTCCCAATACCAGGGGTGTCCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR CCA 90 bp GAGGACAGGATACCAGTAGGAAGGGCTGTTTCAAGTGGGGGTGGTGAGGCTGGGGCGAAGCCTTCCAACTaGGAAACTGGAACCTGGTCA +
Preference number: 4 (lower is better)
Translates to: EDRIPVGRAVSSGGGEAGAKPSN*ETGTWS
Trigger: TGACCAGGTTCCAGTTTCCCAGTTGGAAGGCTTCGC...CCCAGCCTCACCACCCCCACTTGAAACAGCCCTTCCTACTGGTATCCTGTCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp CTGAAAGGCAGCACGGCAGCACTGTCTTTGCACGGTCCATTGTGTGGTCTGCACATAGAATCCCCTGACTaGGTTCCGCTGGGAGCAGGA +
Preference number: 4 (lower is better)
Translates to: LKGSTAALSLHGPLCGLHIESPD*VPLGAG
Trigger: TCCTGCTCCCAGCGGAACCCAGTCAGGGGATTCTAT...GTGCAGACCACACAATGGACCGTGCAAAGACAGTGCTGCCGTGCTGCCTTTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp TCTGGGACACCCCTGGTATTGGGAGGGCATAGATCAGCCTCCTCTGGATGTGGCTGTCTGGGACACCCCTaGTATTGGGAGGGCATAGAT +
Preference number: 4 (lower is better)
Translates to: SGTPLVLGGHRSASSGCGCLGHP*YWEGID
Trigger: ATCTATGCCCTCCCAATACCAGGGGTGTCCCAGACA...GCCACATCCAGAGGAGGCTGATCTATGCCCTCCCAATACCAGGGGTGTCCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000488816.1
3UTR CAA 72 bp AAAGGCAGCACGGCAGCACTGTCTTTGCACGGTCCATaGTGTGGTCTGCACAGTGATGTGCCAAGAAGGGGC +
Preference number: 4 (lower is better)
Translates to: KGSTAALSLHGP*CGLHSDVPRRG
Trigger: GCCCCTTCTTGGCACATCACTGTGCAGACCACACAATGGACCGTGCAAAGACAGTGCTGCCGTGCTGCCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CAA 72 bp AGCTGGTCCCAGGACCACGCGCTAAGAACCACTAGCTaGTTCTTTCACTGCCCTCCTACTCAGGCTGAGGAG +
Preference number: 4 (lower is better)
Translates to: SWSQDHALRTTS*FFHCPPTQAEE
Trigger: CTCCTCAGCCTGAGTAGGAGGGCAGTGAAAGAACAAGCTAGTGGTTCTTAGCGCGTGGTCCTGGGACCAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp ACCACATTTCTAGCACATTTCCAGACAACGAAGCTGGTCCCAGGACCACGCGCTTCCTATAGAATCCCCTaGCTGGGTTCCGCTGGGAGC +
Preference number: 4 (lower is better)
Translates to: TTFLAHFQTTKLVPGPRASYRIP*LGSAGS
Trigger: GCTCCCAGCGGAACCCAGTCAGGGGATTCTATAGGA...AGCGCGTGGTCCTGGGACCAGCTTCGTTGTCTGGAAATGTGCTAGAAATGTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp GAGGACAGGATACCAGTAGGAAGGGCTGTTTCAAGTGGGGGTGGTGAGGCTGGGGTGTCTCTTCTGGTCTaGGATTTGCTCGTGACACTG +
Preference number: 4 (lower is better)
Translates to: EDRIPVGRAVSSGGGEAGVSLLV*DLLVTL
Trigger: CAGTGTCACGAGCAAATCGCAGACCAGAAGAGACAC...CCCAGCCTCACCACCCCCACTTGAAACAGCCCTTCCTACTGGTATCCTGTCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp GAGGACAGGATACCAGTAGGAAGGGCTGTTTCAAGTGGGGGTGGTGAGGCTGGGTCGGTTTCCACTCTGTaGAGCCCACCCCTATTGTAT +
Preference number: 4 (lower is better)
Translates to: EDRIPVGRAVSSGGGEAGSVSTL*SPPLLY
Trigger: ATACAATAGGGGTGGGCTGCACAGAGTGGAAACCGA...CCCAGCCTCACCACCCCCACTTGAAACAGCCCTTCCTACTGGTATCCTGTCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp ACCACATTTCTAGCACATTTCCAGACAACGAAGCTGGTCCCAGGACCACGCGCTACTGTCCAGGGTCACTaGCGGAGTAGTACCTGGCTG +
Preference number: 4 (lower is better)
Translates to: TTFLAHFQTTKLVPGPRATVQGH*RSSTWL
Trigger: CAGCCAGGTACTACTCCGCCAGTGACCCTGGACAGT...AGCGCGTGGTCCTGGGACCAGCTTCGTTGTCTGGAAATGTGCTAGAAATGTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp GAGGACAGGATACCAGTAGGAAGGGCTGTTTCAAGTGGGGGTGGTGAGGCTGGGGCCTACAGTGGGCCATaGAAATGCACATTCTACCAG +
Preference number: 4 (lower is better)
Translates to: EDRIPVGRAVSSGGGEAGAYSGP*KCTFYQ
Trigger: CTGGTAGAATGTGCATTTCCATGGCCCACTGTAGGC...CCCAGCCTCACCACCCCCACTTGAAACAGCCCTTCCTACTGGTATCCTGTCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp TGCCCTAGCGTAGCTCCGCTTTCTCACCAATGTCTGCCAGTAGACAGCTGGGTTCCAGATGCTTCTGTCTaGGACACCCCTGGTATTGGG +
Preference number: 4 (lower is better)
Translates to: CPSVAPLSHQCLPVDSWVPDASV*DTPGIG
Trigger: CCCAATACCAGGGGTGTCCCAGACAGAAGCATCTGG...AACCCAGCTGTCTACTGGCAGACATTGGTGAGAAAGCGGAGCTACGCTAGGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR TCA 90 bp GTTTCCATGACATCTCCCTGCCCTAGCGTAGCTCCGCTTTCTCACCAATGTCTGGAGTTGAGGTTTCCATaGCATCTCCCTGCCCTAGCG +
Preference number: 4 (lower is better)
Translates to: VSMTSPCPSVAPLSHQCLELRFP*HLPALA
Trigger: CGCTAGGGCAGGGAGATGTCATGGAAACCTCAACTC...CAGACATTGGTGAGAAAGCGGAGCTACGCTAGGGCAGGGAGATGTCATGGAAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR GCA 90 bp CATGCAACCACTCAAATAACAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGACCAGGAGGCGGAGCTTaGAGTGAGCCAAGATCGCCC +
Preference number: 4 (lower is better)
Translates to: HATTQITREPGVFQPCARPGGGA*SEPRSP
Trigger: GGGCGATCTTGGCTCACTGCAAGCTCCGCCTCCTGG...TCTTGCACATGGCTGAAACACCCCTGGCTCTCTTGTTATTTGAGTGGTTGCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp CTGAAAGGCAGCACGGCAGCACTGTCTTTGCACGGTCCATTGTGTGGTCTGCACTGTGAATTCTGCATTTaGTGGCCTGTGCTGTTTGCG +
Preference number: 4 (lower is better)
Translates to: LKGSTAALSLHGPLCGLHCEFCI*WPVLFA
Trigger: CGCAAACAGCACAGGCCATCAAATGCAGAATTCACA...GTGCAGACCACACAATGGACCGTGCAAAGACAGTGCTGCCGTGCTGCCTTTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp CTGAAAGGCAGCACGGCAGCACTGTCTTTGCACGGTCCATTGTGTGGTCTGCACTCCCATCTTGAAATTTaGACTGCCTGCGAAGCCTTC +
Preference number: 4 (lower is better)
Translates to: LKGSTAALSLHGPLCGLHSHLEI*TACEAF
Trigger: GAAGGCTTCGCAGGCAGTTCAAATTTCAAGATGGGA...GTGCAGACCACACAATGGACCGTGCAAAGACAGTGCTGCCGTGCTGCCTTTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp AAAGGCAAAATTCCTCAAACACATGTCACAGTGTGGGAACTGAGAGCCATTCCCAGGCGGAGCTTGCAGTaGGCCAAGATCGCCCCACTG +
Preference number: 4 (lower is better)
Translates to: KGKIPQTHVTVWELRAIPRRSLQ*AKIAPL
Trigger: CAGTGGGGCGATCTTGGCTCACTGCAAGCTCCGCCT...GGGAATGGCTCTCAGTTCCCACACTGTGACATGTGTTTGAGGAATTTTGCCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp CATGCAACCACTCAAATAACAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGACCGAGGGGATGCATGTaGACATCTGGCCCCAACTGG +
Preference number: 4 (lower is better)
Translates to: HATTQITREPGVFQPCARPRGCM*TSGPNW
Trigger: CCAGTTGGGGCCAGATGTGCACATGCATCCCCTCGG...TCTTGCACATGGCTGAAACACCCCTGGCTCTCTTGTTATTTGAGTGGTTGCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp ACCACATTTCTAGCACATTTCCAGACAACGAAGCTGGTCCCAGGACCACGCGCTGATGGTGGCGGGGTTTaGGCTCGGGCTTTATATGTT +
Preference number: 4 (lower is better)
Translates to: TTFLAHFQTTKLVPGPRADGGGV*ARALYV
Trigger: AACATATAAAGCCCGAGCCCAAACCCCGCCACCATC...AGCGCGTGGTCCTGGGACCAGCTTCGTTGTCTGGAAATGTGCTAGAAATGTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp CATGCAACCACTCAAATAACAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAGTGAGCTGGAGGCCATaGCAACCAGGCTGCAGGAAG +
Preference number: 4 (lower is better)
Translates to: HATTQITREPGVFQPCARVSWRP*QPGCRK
Trigger: CTTCCTGCAGCCTGGTTGCCATGGCCTCCAGCTCAC...TCTTGCACATGGCTGAAACACCCCTGGCTCTCTTGTTATTTGAGTGGTTGCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp ACCACATTTCTAGCACATTTCCAGACAACGAAGCTGGTCCCAGGACCACGCGCTTGCAAGAGCAGGGACTaGGACATGCTTGAGCTACAG +
Preference number: 4 (lower is better)
Translates to: TTFLAHFQTTKLVPGPRACKSRD*DMLELQ
Trigger: CTGTAGCTCAAGCATGTCCCAGTCCCTGCTCTTGCA...AGCGCGTGGTCCTGGGACCAGCTTCGTTGTCTGGAAATGTGCTAGAAATGTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp GAGGACAGGATACCAGTAGGAAGGGCTGTTTCAAGTGGGGGTGGTGAGGCTGGGGACTTCTCCAAGCATTaGAGTCACAGGGACTTGAAT +
Preference number: 4 (lower is better)
Translates to: EDRIPVGRAVSSGGGEAGDFSKH*SHRDLN
Trigger: ATTCAAGTCCCTGTGACTCCAATGCTTGGAGAAGTC...CCCAGCCTCACCACCCCCACTTGAAACAGCCCTTCCTACTGGTATCCTGTCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp GTTTCCATGACATCTCCCTGCCCTAGCGTAGCTCCGCTTTCTCACCAATGTCTGTGGGTTTCCACAAGGTaGGGTCAAAGGGAGGGAGAA +
Preference number: 4 (lower is better)
Translates to: VSMTSPCPSVAPLSHQCLWVSTR*GQREGE
Trigger: TTCTCCCTCCCTTTGACCCCACCTTGTGGAAACCCA...CAGACATTGGTGAGAAAGCGGAGCTACGCTAGGGCAGGGAGATGTCATGGAAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR TCA 90 bp GAGGACAGGATACCAGTAGGAAGGGCTGTTTCAAGTGGGGGTGGTGAGGCTGGGTCTTCTGGCTGGGTCTaGTTAACTTTTTCCAGCTTT +
Preference number: 4 (lower is better)
Translates to: EDRIPVGRAVSSGGGEAGSSGWV*LTFSSF
Trigger: AAAGCTGGAAAAAGTTAATCAGACCCAGCCAGAAGA...CCCAGCCTCACCACCCCCACTTGAAACAGCCCTTCCTACTGGTATCCTGTCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp ACCACATTTCTAGCACATTTCCAGACAACGAAGCTGGTCCCAGGACCACGCGCTACTCTTCCAGAGAGCTaGTTCTTGGTCTATCCCCTG +
Preference number: 4 (lower is better)
Translates to: TTFLAHFQTTKLVPGPRATLPES*FLVYPL
Trigger: CAGGGGATAGACCAAGAAGCAGCTCTCTGGAAGAGT...AGCGCGTGGTCCTGGGACCAGCTTCGTTGTCTGGAAATGTGCTAGAAATGTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp AGGTGGCCTGAAGGACCCGGACAGCGAAGAGTTGAGGTTTCCATGACATCTCCCGGAAGCAGGCAATGGTaGTCTGGTTATCCAAATCTT +
Preference number: 4 (lower is better)
Translates to: RWPEGPGQRRVEVSMTSPGSRQW*SGYPNL
Trigger: AAGATTTGGATAACCAGAGCACCATTGCCTGCTTCC...GGGAGATGTCATGGAAACCTCAACTCTTCGCTGTCCGGGTCCTTCAGGCCACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR GCA 90 bp TCTGGGACACCCCTGGTATTGGGAGGGCATAGATCAGCCTCCTCTGGATGTGGCTGTAAACTTGGATTCTaGAGGACCCCAGAATTCCTT +
Preference number: 4 (lower is better)
Translates to: SGTPLVLGGHRSASSGCGCKLGF*RTPEFL
Trigger: AAGGAATTCTGGGGTCCTGCAGAATCCAAGTTTACA...GCCACATCCAGAGGAGGCTGATCTATGCCCTCCCAATACCAGGGGTGTCCCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR GCA 90 bp TGGTGGTTTGTAAACTTGGATTCTGCAGGACCCCAGAATTCCTTGGGTAGCTGCTCCATGACATCTCCCTaGCCTAGCGTAGCTCCGCTT +
Preference number: 4 (lower is better)
Translates to: WWFVNLDSAGPQNSLGSCSMTSP*PSVAPL
Trigger: AAGCGGAGCTACGCTAGGGCAGGGAGATGTCATGGA...GCAGCTACCCAAGGAATTCTGGGGTCCTGCAGAATCCAAGTTTACAAACCACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR CCA 90 bp GAGGACAGGATACCAGTAGGAAGGGCTGTTTCAAGTGGGGGTGGTGAGGCTGGGTTGCTGTGCCTGCCCTaGGTTATTTTTCATAAGATG +
Preference number: 4 (lower is better)
Translates to: EDRIPVGRAVSSGGGEAGLLCLP*VIFHKM
Trigger: CATCTTATGAAAAATAACCCAGGGCAGGCACAGCAA...CCCAGCCTCACCACCCCCACTTGAAACAGCCCTTCCTACTGGTATCCTGTCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp CTGAAAGGCAGCACGGCAGCACTGTCTTTGCACGGTCCATTGTGTGGTCTGCACGATGCCATGGCTTATTaGTTCCACAGTAACTACAGA +
Preference number: 4 (lower is better)
Translates to: LKGSTAALSLHGPLCGLHDAMAY*FHSNYR
Trigger: TCTGTAGTTACTGTGGAATCAATAAGCCATGGCATC...GTGCAGACCACACAATGGACCGTGCAAAGACAGTGCTGCCGTGCTGCCTTTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp CATGCAACCACTCAAATAACAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGATTGTCCCATGGATTCTaGTGGGGGACTGGAGGAAGC +
Preference number: 4 (lower is better)
Translates to: HATTQITREPGVFQPCARLSHGF*WGTGGS
Trigger: GCTTCCTCCAGTCCCCCATCAGAATCCATGGGACAA...TCTTGCACATGGCTGAAACACCCCTGGCTCTCTTGTTATTTGAGTGGTTGCATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp ACCACATTTCTAGCACATTTCCAGACAACGAAGCTGGTCCCAGGACCACGCGCTCACAGTCAGGCTTGGTaGCCAAGATGGAATTTCATG +
Preference number: 4 (lower is better)
Translates to: TTFLAHFQTTKLVPGPRAHSQAW*PRWNFM
Trigger: CATGAAATTCCATCTTGGTCACCAAGCCTGACTGTG...AGCGCGTGGTCCTGGGACCAGCTTCGTTGTCTGGAAATGTGCTAGAAATGTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp AGGTGGCCTGAAGGACCCGGACAGCGAAGAGTTGAGGTTTCCATGACATCTCCCCAGGCAATGGTGCTCTaGTTATCCAAATCTTCATTC +
Preference number: 4 (lower is better)
Translates to: RWPEGPGQRRVEVSMTSPQAMVL*LSKSSF
Trigger: GAATGAAGATTTGGATAACCAGAGCACCATTGCCTG...GGGAGATGTCATGGAAACCTCAACTCTTCGCTGTCCGGGTCCTTCAGGCCACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488816.1
3UTR CAA 72 bp CCCGGCATCTATATTCGCAGCTCTCTTGTCACAGGTTaGGCCACTATGTCCTCAACTCCAACGGTACAAACC +
Preference number: 4 (lower is better)
Translates to: PGIYIRSSLVTG*ATMSSTPTVQT
Trigger: GGTTTGTACCGTTGGAGTTGAGGACATAGTGGCCAAACCTGTGACAAGAGAGCTGCGAATATAGATGCCGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CAA 72 bp AAGAAGGGGCTCATGATCAGTTTCTTCATGCAGTCCTaGCACAGTCTCCTCCCTGACAAGGTGGATGGCTCT +
Preference number: 4 (lower is better)
Translates to: KKGLMISFFMQS*HSLLPDKVDGS
Trigger: AGAGCCATCCACCTTGTCAGGGAGGAGACTGTGCAAGGACTGCATGAAGAAACTGATCATGAGCCCCTTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CAA 72 bp AGTGACCCATACACCAAACCCAAGTGTTTTACGAGTTaGAGGGAGTCCGAGGGGATGCATGTGCACATCTGG +
Preference number: 4 (lower is better)
Translates to: SDPYTKPKCFTS*RESEGMHVHIW
Trigger: CCAGATGTGCACATGCATCCCCTCGGACTCCCTCAAACTCGTAAAACACTTGGGTTTGGTGTATGGGTCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CAA 72 bp TTTGTAAACTTGGATTCTGCAGGACCCCAGAATTCCTaGGGTAGCTGCCAGATGCTTCTGTCTGGGACACCC +
Preference number: 4 (lower is better)
Translates to: FVNLDSAGPQNS*GSCQMLLSGTP
Trigger: GGGTGTCCCAGACAGAAGCATCTGGCAGCTACCCAAGGAATTCTGGGGTCCTGCAGAATCCAAGTTTACAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR TCA 90 bp AAAGGCAAAATTCCTCAAACACATGTCACAGTGTGGGAACTGAGAGCCATTCCCGTAACTACAGACCTATaGTGGTGGCGGGGTTTGGGC +
Preference number: 4 (lower is better)
Translates to: KGKIPQTHVTVWELRAIPVTTDL*WWRGLG
Trigger: GCCCAAACCCCGCCACCATCATAGGTCTGTAGTTAC...GGGAATGGCTCTCAGTTCCCACACTGTGACATGTGTTTGAGGAATTTTGCCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp CTGAAAGGCAGCACGGCAGCACTGTCTTTGCACGGTCCATTGTGTGGTCTGCACACTTCCAAGTACTCCTaGACTCTTGAATCAATGGTT +
Preference number: 4 (lower is better)
Translates to: LKGSTAALSLHGPLCGLHTSKYS*TLESMV
Trigger: AACCATTGATTCAAGAGTTCAGGAGTACTTGGAAGT...GTGCAGACCACACAATGGACCGTGCAAAGACAGTGCTGCCGTGCTGCCTTTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp ACCACATTTCTAGCACATTTCCAGACAACGAAGCTGGTCCCAGGACCACGCGCTCGACTGAATGCAAGCTaGCTGACACAAACCACAAAT +
Preference number: 4 (lower is better)
Translates to: TTFLAHFQTTKLVPGPRARLNAS*LTQTTN
Trigger: ATTTGTGGTTTGTGTCAGTCAGCTTGCATTCAGTCG...AGCGCGTGGTCCTGGGACCAGCTTCGTTGTCTGGAAATGTGCTAGAAATGTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp AGCGTAGCTCCGCTTTCTCACCAATGTCTGCCAGTAGACAGCTGGGTTTCCACACGACTGAATGCAAGCTaGCTGACACAAACCACAAAT +
Preference number: 4 (lower is better)
Translates to: SVAPLSHQCLPVDSWVSTRLNAS*LTQTTN
Trigger: ATTTGTGGTTTGTGTCAGTCAGCTTGCATTCAGTCG...TGTGGAAACCCAGCTGTCTACTGGCAGACATTGGTGAGAAAGCGGAGCTACGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR TCA 90 bp GAGGACAGGATACCAGTAGGAAGGGCTGTTTCAAGTGGGGGTGGTGAGGCTGGGTTGGTTGGGCTGTTCTaGATTGTAGATAATCTTTCA +
Preference number: 4 (lower is better)
Translates to: EDRIPVGRAVSSGGGEAGLVGLF*IVDNLS
Trigger: TGAAAGATTATCTACAATTCAGAACAGCCCAACCAA...CCCAGCCTCACCACCCCCACTTGAAACAGCCCTTCCTACTGGTATCCTGTCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp AAGGTTGGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCGTGTGGTCTGCACAGTaGTGTGCCAAGAAGGGGCTC +
Preference number: 4 (lower is better)
Translates to: KVGQNRPSTSTIIRESNTVWSAQ*CAKKGL
Trigger: GAGCCCCTTCTTGGCACATCACTGTGCAGACCACAC...GGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCCAACCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp GGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTTCATGTTCAAGTGGGGGTGGTaGGGCTGGGATCATGGGACA +
Preference number: 4 (lower is better)
Translates to: GQNRPSTSTIIRESNTFMFKWGW*GWDHGT
Trigger: TGTCCCATGATCCCAGCCTCACCACCCCCACTTGAA...CATGAAGGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp CAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAAAATGCTTAAAGGCAAAAGACAGGAGAATGACGTaGACCCAGGAGGCGGAGCTT +
Preference number: 4 (lower is better)
Translates to: QESQGCFSHVQEKCLKAKDRRMT*TQEAEL
Trigger: AAGCTCCGCCTCCTGGGTTCACGTCATTCTCCTGTC...TTTTGCCTTTAAGCATTTTTCTTGCACATGGCTGAAACACCCCTGGCTCTCTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp GAGGACAGGATACCAGTAGGAAGGGCTGTTTCAAGTGGGGGTGGTGAGGCTGGGATCAAATCATATCAATaGCTTCTCCAAGCATTGGAG +
Preference number: 4 (lower is better)
Translates to: EDRIPVGRAVSSGGGEAGIKSYQ*LLQALE
Trigger: CTCCAATGCTTGGAGAAGTCATTGATATGATTTGAT...CCCAGCCTCACCACCCCCACTTGAAACAGCCCTTCCTACTGGTATCCTGTCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp TGCCCTAGCGTAGCTCCGCTTTCTCACCAATGTCTGCCAGTAGACAGCTGGGTTAAGATCACGACTGAATaGAAGCTGACTGACACAAAC +
Preference number: 4 (lower is better)
Translates to: CPSVAPLSHQCLPVDSWVKITTE*KLTDTN
Trigger: GTTTGTGTCAGTCAGCTTGCATTCAGTCGTGATCTT...AACCCAGCTGTCTACTGGCAGACATTGGTGAGAAAGCGGAGCTACGCTAGGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR GCA 90 bp GTTTCCATGACATCTCCCTGCCCTAGCGTAGCTCCGCTTTCTCACCAATGTCTGCTGGATGTGGCTCAGTaGCAGGACTTTAATTGTGAA +
Preference number: 4 (lower is better)
Translates to: VSMTSPCPSVAPLSHQCLLDVAQ*QDFNCE
Trigger: TTCACAATTAAAGTCCTGGCACTGAGCCACATCCAG...CAGACATTGGTGAGAAAGCGGAGCTACGCTAGGGCAGGGAGATGTCATGGAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR CCA 90 bp CATGCAACCACTCAAATAACAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAGAGAAACTCTCCCGTaGTGGTCGAAGTCTTCCGCA +
Preference number: 4 (lower is better)
Translates to: HATTQITREPGVFQPCARRETLP*WSKSSA
Trigger: TGCGGAAGACTTCGACCACCACGGGAGAGTTTCTCT...TCTTGCACATGGCTGAAACACCCCTGGCTCTCTTGTTATTTGAGTGGTTGCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp CTGAAAGGCAGCACGGCAGCACTGTCTTTGCACGGTCCATTGTGTGGTCTGCACGTGAAATTCGGTTATTaGAAACTTTTAGCGGGTGTC +
Preference number: 4 (lower is better)
Translates to: LKGSTAALSLHGPLCGLHVKFGY*KLLAGV
Trigger: GACACCCGCTAAAAGTTTCCAATAACCGAATTTCAC...GTGCAGACCACACAATGGACCGTGCAAAGACAGTGCTGCCGTGCTGCCTTTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp CTGAAAGGCAGCACGGCAGCACTGTCTTTGCACGGTCCATTGTGTGGTCTGCACAAGTTAGTATTCTGTTaGGCTCCCTCTTCTCCTATA +
Preference number: 4 (lower is better)
Translates to: LKGSTAALSLHGPLCGLHKLVFC*APSSPI
Trigger: TATAGGAGAAGAGGGAGCCCAACAGAATACTAACTT...GTGCAGACCACACAATGGACCGTGCAAAGACAGTGCTGCCGTGCTGCCTTTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp ACCACATTTCTAGCACATTTCCAGACAACGAAGCTGGTCCCAGGACCACGCGCTGAAAGCACATGGAAGTaGCTTAGAATCTATGCCGCT +
Preference number: 4 (lower is better)
Translates to: TTFLAHFQTTKLVPGPRAESTWK*LRIYAA
Trigger: AGCGGCATAGATTCTAAGCCACTTCCATGTGCTTTC...AGCGCGTGGTCCTGGGACCAGCTTCGTTGTCTGGAAATGTGCTAGAAATGTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp AGCGTAGCTCCGCTTTCTCACCAATGTCTGCCAGTAGACAGCTGGGTTTCCACAGAAGGAAGCAGGCAATaGTGCTCTGGTTATCCAAAT +
Preference number: 4 (lower is better)
Translates to: SVAPLSHQCLPVDSWVSTEGSRQ*CSGYPN
Trigger: ATTTGGATAACCAGAGCACCATTGCCTGCTTCCTTC...TGTGGAAACCCAGCTGTCTACTGGCAGACATTGGTGAGAAAGCGGAGCTACGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR TCA 90 bp ATCCTGAAGCAAAACCTTGTTCTGGTGGTTTGTAAACTTGGATTCTGCAGGACCCATTCTGTGTGCTCCTaGTGCAGCGAAGGCGTATCC +
Preference number: 4 (lower is better)
Translates to: ILKQNLVLVVCKLGFCRTHSVCS*CSEGVS
Trigger: GGATACGCCTTCGCTGCATCAGGAGCACACAGAATG...GGTCCTGCAGAATCCAAGTTTACAAACCACCAGAACAAGGTTTTGCTTCAGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR TCA 90 bp TTAAAATCCCGGCATCTATATTCGCAGCTCTCTTGTCACAGGTTTGGCCACTATTGCACTGGGAGGAAGTaGACTCTCTGCACACTCAGC +
Preference number: 4 (lower is better)
Translates to: LKSRHLYSQLSCHRFGHYCTGRK*TLCTLS
Trigger: GCTGAGTGTGCAGAGAGTTCACTTCCTCCCAGTGCA...ATAGTGGCCAAACCTGTGACAAGAGAGCTGCGAATATAGATGCCGGGATTTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp GGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTTCATGGGACTGGAGGAAGCCTaGCCATCATTCCTCCTCCTT +
Preference number: 4 (lower is better)
Translates to: GQNRPSTSTIIRESNTFMGLEEA*PSFLLL
Trigger: AAGGAGGAGGAATGATGGTCAGGCTTCCTCCAGTCC...CATGAAGGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp AAAGGCAAAATTCCTCAAACACATGTCACAGTGTGGGAACTGAGAGCCATTCCCACAGGTAGCCGGAACTaGAGCCAACCTTCAGAAGCT +
Preference number: 4 (lower is better)
Translates to: KGKIPQTHVTVWELRAIPTGSRN*SQPSEA
Trigger: AGCTTCTGAAGGTTGGCTGCAGTTCCGGCTACCTGT...GGGAATGGCTCTCAGTTCCCACACTGTGACATGTGTTTGAGGAATTTTGCCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp ACCACATTTCTAGCACATTTCCAGACAACGAAGCTGGTCCCAGGACCACGCGCTAAGATCACGACTGAATaGAAGCTGACTGACACAAAC +
Preference number: 4 (lower is better)
Translates to: TTFLAHFQTTKLVPGPRAKITTE*KLTDTN
Trigger: GTTTGTGTCAGTCAGCTTGCATTCAGTCGTGATCTT...AGCGCGTGGTCCTGGGACCAGCTTCGTTGTCTGGAAATGTGCTAGAAATGTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp GGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTTCATGCGGCAGCACTGTCTTTaGACGGTCCATTGTGTGGTC +
Preference number: 4 (lower is better)
Translates to: GQNRPSTSTIIRESNTFMRQHCL*TVHCVV
Trigger: GACCACACAATGGACCGTGCAAAGACAGTGCTGCCG...CATGAAGGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp CATGCAACCACTCAAATAACAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAGTAGTACCTGGCTGTaGAAACTCGGACTACACAGG +
Preference number: 4 (lower is better)
Translates to: HATTQITREPGVFQPCARSSTWL*KLGLHR
Trigger: CCTGTGTAGTCCGAGTTTCCACAGCCAGGTACTACT...TCTTGCACATGGCTGAAACACCCCTGGCTCTCTTGTTATTTGAGTGGTTGCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp TTAAAATCCCGGCATCTATATTCGCAGCTCTCTTGTCACAGGTTTGGCCACTATACAGGAAGCCCCCAGTaGCTCTCAGCTGCCTTTATG +
Preference number: 4 (lower is better)
Translates to: LKSRHLYSQLSCHRFGHYTGSPQ*LSAAFM
Trigger: CATAAAGGCAGCTGAGAGCCACTGGGGGCTTCCTGT...ATAGTGGCCAAACCTGTGACAAGAGAGCTGCGAATATAGATGCCGGGATTTTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp TTAAAATCCCGGCATCTATATTCGCAGCTCTCTTGTCACAGGTTTGGCCACTATGAAACTCTCCCGTGGTaGTCGAAGTCTTCCGCAGAG +
Preference number: 4 (lower is better)
Translates to: LKSRHLYSQLSCHRFGHYETLPW*SKSSAE
Trigger: CTCTGCGGAAGACTTCGACCACCACGGGAGAGTTTC...ATAGTGGCCAAACCTGTGACAAGAGAGCTGCGAATATAGATGCCGGGATTTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp CAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAAAATGCTTAAAGGCAAAACCAAAATCCTGGAGGTaGGTGCAAGAGCAGGGACTG +
Preference number: 4 (lower is better)
Translates to: QESQGCFSHVQEKCLKAKPKSWR*VQEQGL
Trigger: CAGTCCCTGCTCTTGCACCCACCTCCAGGATTTTGG...TTTTGCCTTTAAGCATTTTTCTTGCACATGGCTGAAACACCCCTGGCTCTCTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp ACCACATTTCTAGCACATTTCCAGACAACGAAGCTGGTCCCAGGACCACGCGCTGGGGTACTACGCAAGTaGTTGAAGAACTTGTTCTTT +
Preference number: 4 (lower is better)
Translates to: TTFLAHFQTTKLVPGPRAGVLRK*LKNLFF
Trigger: AAAGAACAAGTTCTTCAACCACTTGCGTAGTACCCC...AGCGCGTGGTCCTGGGACCAGCTTCGTTGTCTGGAAATGTGCTAGAAATGTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp GACAGTCATTTCGCAGCAGTGGAGTCAAACACTATCCTGAAGCAAAACCTTGTTCTGCCAGTAGACAGCTaGGTTTCCACAAGGTGGGGT +
Preference number: 4 (lower is better)
Translates to: DSHFAAVESNTILKQNLVLPVDS*VSTRWG
Trigger: ACCCCACCTTGTGGAAACCCAGCTGTCTACTGGCAG...AACAAGGTTTTGCTTCAGGATAGTGTTTGACTCCACTGCTGCGAAATGACTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR TCA 90 bp AGGTTTCTAGGCAGGGTTTGGAACATTAAAGTAACAGTATCTACCACCACAGTCCATTCTGTGTGCTCCTaGTGCAGCGAAGGCGTATCC +
Preference number: 4 (lower is better)
Translates to: RFLGRVWNIKVTVSTTTVHSVCS*CSEGVS
Trigger: GGATACGCCTTCGCTGCATCAGGAGCACACAGAATG...GACTGTGGTGGTAGATACTGTTACTTTAATGTTCCAAACCCTGCCTAGAAACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp AAGGTTGGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCGAACCCGGAAGAGAGTaGCCCATACACCAAACCCAA +
Preference number: 4 (lower is better)
Translates to: KVGQNRPSTSTIIRESNTEPGRE*PIHQTQ
Trigger: TTGGGTTTGGTGTATGGGTCACTCTCTTCCGGGTTC...GGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCCAACCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp CATGCAACCACTCAAATAACAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAACAACGAGCCTCTCTaGTGTCTTCTCCTAAGGTTG +
Preference number: 4 (lower is better)
Translates to: HATTQITREPGVFQPCARNNEPL*CLLLRL
Trigger: CAACCTTAGGAGAAGACATCAGAGAGGCTCGTTGTT...TCTTGCACATGGCTGAAACACCCCTGGCTCTCTTGTTATTTGAGTGGTTGCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp AGGTTTCTAGGCAGGGTTTGGAACATTAAAGTAACAGTATCTACCACCACAGTCGGACTGGGACATGCTTaGGCTACAGGCAACAACGAG +
Preference number: 4 (lower is better)
Translates to: RFLGRVWNIKVTVSTTTVGLGHA*ATGNNE
Trigger: CTCGTTGTTGCCTGTAGCTCAAGCATGTCCCAGTCC...GACTGTGGTGGTAGATACTGTTACTTTAATGTTCCAAACCCTGCCTAGAAACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp ACCACATTTCTAGCACATTTCCAGACAACGAAGCTGGTCCCAGGACCACGCGCTCTACAATTCACTATGTaGCATTTCATCAAGCCCACT +
Preference number: 4 (lower is better)
Translates to: TTFLAHFQTTKLVPGPRALQFTM*HFIKPT
Trigger: AGTGGGCTTGATGAAATGTCACATAGTGAATTGTAG...AGCGCGTGGTCCTGGGACCAGCTTCGTTGTCTGGAAATGTGCTAGAAATGTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp AAAGGCAAAATTCCTCAAACACATGTCACAGTGTGGGAACTGAGAGCCATTCCCAGTCTTCCGCAGAGCTaGAGTTCCTGCGTTTCTGTT +
Preference number: 4 (lower is better)
Translates to: KGKIPQTHVTVWELRAIPSLPQS*SSCVSV
Trigger: AACAGAAACGCAGGAACTGCAGCTCTGCGGAAGACT...GGGAATGGCTCTCAGTTCCCACACTGTGACATGTGTTTGAGGAATTTTGCCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp TTAAAATCCCGGCATCTATATTCGCAGCTCTCTTGTCACAGGTTTGGCCACTATGCAGGGACTGGGACATaGTTGAGCTACAGGCAACAA +
Preference number: 4 (lower is better)
Translates to: LKSRHLYSQLSCHRFGHYAGTGT*LSYRQQ
Trigger: TTGTTGCCTGTAGCTCAAGCATGTCCCAGTCCCTGC...ATAGTGGCCAAACCTGTGACAAGAGAGCTGCGAATATAGATGCCGGGATTTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp TTAAAATCCCGGCATCTATATTCGCAGCTCTCTTGTCACAGGTTTGGCCACTATTCCGGAGCTTTGCACTaGGAGGAAGTGAACTCTCTG +
Preference number: 4 (lower is better)
Translates to: LKSRHLYSQLSCHRFGHYSGALH*EEVNSL
Trigger: CAGAGAGTTCACTTCCTCCCAGTGCAAAGCTCCGGA...ATAGTGGCCAAACCTGTGACAAGAGAGCTGCGAATATAGATGCCGGGATTTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp AAAGGCAAAATTCCTCAAACACATGTCACAGTGTGGGAACTGAGAGCCATTCCCCAGAGAGCTGCTTCTTaGTCTATCCCCTGGGTTACT +
Preference number: 4 (lower is better)
Translates to: KGKIPQTHVTVWELRAIPQRAAS*SIPWVT
Trigger: AGTAACCCAGGGGATAGACCAAGAAGCAGCTCTCTG...GGGAATGGCTCTCAGTTCCCACACTGTGACATGTGTTTGAGGAATTTTGCCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp AAAGGCAAAATTCCTCAAACACATGTCACAGTGTGGGAACTGAGAGCCATTCCCACACATGTCACAGTGTaGGAACTGAGAGCCATTCCC +
Preference number: 4 (lower is better)
Translates to: KGKIPQTHVTVWELRAIPTHVTV*ELRAIP
Trigger: GGGAATGGCTCTCAGTTCCCACACTGTGACATGTGT...GGGAATGGCTCTCAGTTCCCACACTGTGACATGTGTTTGAGGAATTTTGCCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp ATCCTGAAGCAAAACCTTGTTCTGGTGGTTTGTAAACTTGGATTCTGCAGGACCGACCCCAGAATTCCTTaGGTAGCTGCCAGATGCTTC +
Preference number: 4 (lower is better)
Translates to: ILKQNLVLVVCKLGFCRTDPRIP*VAARCF
Trigger: GAAGCATCTGGCAGCTACCCAAGGAATTCTGGGGTC...GGTCCTGCAGAATCCAAGTTTACAAACCACCAGAACAAGGTTTTGCTTCAGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR TCA 90 bp GTACTACGCAAGTGGTTGAAGAACTTGTTCTTTTTGACTAACAATACTGACACTTTGTACCCCTGGAGCTaGAAGGCAGCACGGCAGCAC +
Preference number: 4 (lower is better)
Translates to: VLRKWLKNLFFLTNNTDTLYPWS*KAARQH
Trigger: GTGCTGCCGTGCTGCCTTTCAGCTCCAGGGGTACAA...AGTGTCAGTATTGTTAGTCAAAAAGAACAAGTTCTTCAACCACTTGCGTAGTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp CAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAAAATGCTTAAAGGCAAAAGGAAGGCTCCCATCTTaGAATTTGAACTGCCTGCGA +
Preference number: 4 (lower is better)
Translates to: QESQGCFSHVQEKCLKAKGRLPS*NLNCLR
Trigger: TCGCAGGCAGTTCAAATTTCAAGATGGGAGCCTTCC...TTTTGCCTTTAAGCATTTTTCTTGCACATGGCTGAAACACCCCTGGCTCTCTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp AAGGTTGGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCCAAGGAAATTGGGAATaGCGACACTGTGATCCCAGG +
Preference number: 4 (lower is better)
Translates to: KVGQNRPSTSTIIRESNTQGNWE*RHCDPR
Trigger: CCTGGGATCACAGTGTCGTCATTCCCAATTTCCTTG...GGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCCAACCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp TGGTGGTTTGTAAACTTGGATTCTGCAGGACCCCAGAATTCCTTGGGTAGCTGCAGTCAAACACTATCCTaGAGCAAAACCTTGTTCTGG +
Preference number: 4 (lower is better)
Translates to: WWFVNLDSAGPQNSLGSCSQTLS*SKTLFW
Trigger: CCAGAACAAGGTTTTGCTTCAGGATAGTGTTTGACT...GCAGCTACCCAAGGAATTCTGGGGTCCTGCAGAATCCAAGTTTACAAACCACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR GCA 90 bp GGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTTCATGCCAGTGGCTCTCAGCTaGCTTTATGGAATCCTTTGC +
Preference number: 4 (lower is better)
Translates to: GQNRPSTSTIIRESNTFMPVALS*LYGILC
Trigger: GCAAAGGATTCCATAAAGGCAGCTGAGAGCCACTGG...CATGAAGGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp CAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAAAATGCTTAAAGGCAAAATACAGACGGGGCTCCTaGTTAGAAGCCCTGTCTTTA +
Preference number: 4 (lower is better)
Translates to: QESQGCFSHVQEKCLKAKYRRGS*LEALSL
Trigger: TAAAGACAGGGCTTCTAAGCAGGAGCCCCGTCTGTA...TTTTGCCTTTAAGCATTTTTCTTGCACATGGCTGAAACACCCCTGGCTCTCTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp TTAAAATCCCGGCATCTATATTCGCAGCTCTCTTGTCACAGGTTTGGCCACTATCAGAGCTGCAGTTCCTaGGTTTCTGTTGGGTTTTGG +
Preference number: 4 (lower is better)
Translates to: LKSRHLYSQLSCHRFGHYQSCSS*VSVGFW
Trigger: CCAAAACCCAACAGAAACGCAGGAACTGCAGCTCTG...ATAGTGGCCAAACCTGTGACAAGAGAGCTGCGAATATAGATGCCGGGATTTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp GAAATTCGGTTATTGGAAACTTTTAGCGGGTGTCCATCCAAAATAAGTCATTGCGTGGCTAAGCCGGTTTaGTGTGCCTGCCCTGGGTTA +
Preference number: 4 (lower is better)
Translates to: EIRLLETFSGCPSKISHCVAKPV*CACPGL
Trigger: TAACCCAGGGCAGGCACAGCAAACCGGCTTAGCCAC...GCAATGACTTATTTTGGATGGACACCCGCTAAAAGTTTCCAATAACCGAATTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp GGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTTCATGTCTTCATGCAGTCCTTaGACAGTCTCCTCCCTGACA +
Preference number: 4 (lower is better)
Translates to: GQNRPSTSTIIRESNTFMSSCSP*TVSSLT
Trigger: TGTCAGGGAGGAGACTGTGCAAGGACTGCATGAAGA...CATGAAGGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp AAGGTTGGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCAGCTTGTTCTTTCACTaGCCTCCTACTCAGGCTGAG +
Preference number: 4 (lower is better)
Translates to: KVGQNRPSTSTIIRESNTSLFFH*PPTQAE
Trigger: CTCAGCCTGAGTAGGAGGGCAGTGAAAGAACAAGCT...GGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCCAACCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp CAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAAAATGCTTAAAGGCAAAAATTCTGATGGGGGACTaGAGGAAGCCTGACCATCAT +
Preference number: 4 (lower is better)
Translates to: QESQGCFSHVQEKCLKAKILMGD*RKPDHH
Trigger: ATGATGGTCAGGCTTCCTCCAGTCCCCCATCAGAAT...TTTTGCCTTTAAGCATTTTTCTTGCACATGGCTGAAACACCCCTGGCTCTCTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp GGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTTCATGTTCCTGCGTTTCTGTTaGGTTTTGGCCACTCGTGGA +
Preference number: 4 (lower is better)
Translates to: GQNRPSTSTIIRESNTFMFLRFC*VLATRG
Trigger: TCCACGAGTGGCCAAAACCCAACAGAAACGCAGGAA...CATGAAGGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp ACCACATTTCTAGCACATTTCCAGACAACGAAGCTGGTCCCAGGACCACGCGCTAAGGATAGAACGGGATaGAATAAACCACTAATCCAT +
Preference number: 4 (lower is better)
Translates to: TTFLAHFQTTKLVPGPRAKDRTG*NKPLIH
Trigger: ATGGATTAGTGGTTTATTCCATCCCGTTCTATCCTT...AGCGCGTGGTCCTGGGACCAGCTTCGTTGTCTGGAAATGTGCTAGAAATGTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp GGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTTCATGGTGAGGCTGGGATCATaGGACAGGAACAGGTTTCTA +
Preference number: 4 (lower is better)
Translates to: GQNRPSTSTIIRESNTFMVRLGS*DRNRFL
Trigger: TAGAAACCTGTTCCTGTCCCATGATCCCAGCCTCAC...CATGAAGGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp GTTTCCATGACATCTCCCTGCCCTAGCGTAGCTCCGCTTTCTCACCAATGTCTGAGCAAAACCTTGTTCTaGTGGTTTGTAAACTTGGAT +
Preference number: 4 (lower is better)
Translates to: VSMTSPCPSVAPLSHQCLSKTLF*WFVNLD
Trigger: ATCCAAGTTTACAAACCACCAGAACAAGGTTTTGCT...CAGACATTGGTGAGAAAGCGGAGCTACGCTAGGGCAGGGAGATGTCATGGAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR TCA 90 bp CATGCAACCACTCAAATAACAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAATAGCTGCTGCTTCATaGGTCTTACTGGTCTTAACA +
Preference number: 4 (lower is better)
Translates to: HATTQITREPGVFQPCARIAAAS*VLLVLT
Trigger: TGTTAAGACCAGTAAGACTCATGAAGCAGCAGCTAT...TCTTGCACATGGCTGAAACACCCCTGGCTCTCTTGTTATTTGAGTGGTTGCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp AAAGGCAAAATTCCTCAAACACATGTCACAGTGTGGGAACTGAGAGCCATTCCCCCCAAAATGGTGCCATaGAATATAGCTGCTGCTTCA +
Preference number: 4 (lower is better)
Translates to: KGKIPQTHVTVWELRAIPPKMVP*NIAAAS
Trigger: TGAAGCAGCAGCTATATTTCATGGCACCATTTTGGG...GGGAATGGCTCTCAGTTCCCACACTGTGACATGTGTTTGAGGAATTTTGCCTTT
46% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp AAAGGCAAAATTCCTCAAACACATGTCACAGTGTGGGAACTGAGAGCCATTCCCCAAGTCACAGCACGCTaGAAAGAGAACTTTGAGTTC +
Preference number: 4 (lower is better)
Translates to: KGKIPQTHVTVWELRAIPQVTAR*KENFEF
Trigger: GAACTCAAAGTTCTCTTTTCAGCGTGCTGTGACTTG...GGGAATGGCTCTCAGTTCCCACACTGTGACATGTGTTTGAGGAATTTTGCCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp GGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTTCATGCCGGTTTGCTGTGCCTaGCCTGGGTTATTTTTCATA +
Preference number: 4 (lower is better)
Translates to: GQNRPSTSTIIRESNTFMPVCCA*PGLFFI
Trigger: TATGAAAAATAACCCAGGGCAGGCACAGCAAACCGG...CATGAAGGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp CAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAAAATGCTTAAAGGCAAAAGTCCATTGTGTGGTCTaGACAGTGATGTGCCAAGAA +
Preference number: 4 (lower is better)
Translates to: QESQGCFSHVQEKCLKAKVHCVV*TVMCQE
Trigger: TTCTTGGCACATCACTGTGCAGACCACACAATGGAC...TTTTGCCTTTAAGCATTTTTCTTGCACATGGCTGAAACACCCCTGGCTCTCTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp TTAAAATCCCGGCATCTATATTCGCAGCTCTCTTGTCACAGGTTTGGCCACTATCTCTTGTCACAGGTTTaGCCACTATGTCCTCAACTC +
Preference number: 4 (lower is better)
Translates to: LKSRHLYSQLSCHRFGHYLLSQV*PLCPQL
Trigger: GAGTTGAGGACATAGTGGCCAAACCTGTGACAAGAG...ATAGTGGCCAAACCTGTGACAAGAGAGCTGCGAATATAGATGCCGGGATTTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp GGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTTCATGAAAGTAACACCTTCATaGGTGCCATGGCTGCCATAC +
Preference number: 4 (lower is better)
Translates to: GQNRPSTSTIIRESNTFMKVTPS*VPWLPY
Trigger: GTATGGCAGCCATGGCACCCATGAAGGTGTTACTTT...CATGAAGGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp CAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAAAATGCTTAAAGGCAAAATTCCAACTGGGAAACTaGAACCTGGTCACTGAGTTC +
Preference number: 4 (lower is better)
Translates to: QESQGCFSHVQEKCLKAKFQLGN*NLVTEF
Trigger: GAACTCAGTGACCAGGTTCCAGTTTCCCAGTTGGAA...TTTTGCCTTTAAGCATTTTTCTTGCACATGGCTGAAACACCCCTGGCTCTCTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp GGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTTCATGTTTCATCAAGCCCACTaGAGACAGTGGGTGACATTG +
Preference number: 4 (lower is better)
Translates to: GQNRPSTSTIIRESNTFMFHQAH*RQWVTL
Trigger: CAATGTCACCCACTGTCTCCAGTGGGCTTGATGAAA...CATGAAGGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp CATGCAACCACTCAAATAACAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGATCTTGGTCTATCCCCTaGGTTACTTATTACTTGTGC +
Preference number: 4 (lower is better)
Translates to: HATTQITREPGVFQPCARSWSIP*VTYYLC
Trigger: GCACAAGTAATAAGTAACCCAGGGGATAGACCAAGA...TCTTGCACATGGCTGAAACACCCCTGGCTCTCTTGTTATTTGAGTGGTTGCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp GGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTTCATGTCTGCGATTTGCTCGTaGCACTGCTTTTTGTTTCAG +
Preference number: 4 (lower is better)
Translates to: GQNRPSTSTIIRESNTFMSAICS*HCFLFQ
Trigger: CTGAAACAAAAAGCAGTGTCACGAGCAAATCGCAGA...CATGAAGGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp CATGCAACCACTCAAATAACAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGATATAGCCTCCCGGTTTaGAATGCTTTGAAAACAAAC +
Preference number: 4 (lower is better)
Translates to: HATTQITREPGVFQPCARYSLPV*NALKTN
Trigger: GTTTGTTTTCAAAGCATTTCAAACCGGGAGGCTATA...TCTTGCACATGGCTGAAACACCCCTGGCTCTCTTGTTATTTGAGTGGTTGCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp GTACTACGCAAGTGGTTGAAGAACTTGTTCTTTTTGACTAACAATACTGACACTGCACAGTCTCCTCCCTaGCAAGGTGGATGGCTCTTT +
Preference number: 4 (lower is better)
Translates to: VLRKWLKNLFFLTNNTDTAQSPP*QGGWLF
Trigger: AAAGAGCCATCCACCTTGTCAGGGAGGAGACTGTGC...AGTGTCAGTATTGTTAGTCAAAAAGAACAAGTTCTTCAACCACTTGCGTAGTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp AAGGTTGGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCCAAACAATTACACTGTaGTCCCATTGTGGTCCCCAA +
Preference number: 4 (lower is better)
Translates to: KVGQNRPSTSTIIRESNTQTITL*SHCGPQ
Trigger: TTGGGGACCACAATGGGATCACAGTGTAATTGTTTG...GGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCCAACCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp GTACTACGCAAGTGGTTGAAGAACTTGTTCTTTTTGACTAACAATACTGACACTGGAATGACGACACTGTaGTCCCAGGCCACTCTCTTG +
Preference number: 4 (lower is better)
Translates to: VLRKWLKNLFFLTNNTDTGMTTL*SQATLL
Trigger: CAAGAGAGTGGCCTGGGATCACAGTGTCGTCATTCC...AGTGTCAGTATTGTTAGTCAAAAAGAACAAGTTCTTCAACCACTTGCGTAGTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp AGGTTTCTAGGCAGGGTTTGGAACATTAAAGTAACAGTATCTACCACCACAGTCTTCCCTTATGTGTTCTaGCCTCGCCAAGCTCTTTCT +
Preference number: 4 (lower is better)
Translates to: RFLGRVWNIKVTVSTTTVFPYVF*PRQALS
Trigger: AGAAAGAGCTTGGCGAGGGCAGAACACATAAGGGAA...GACTGTGGTGGTAGATACTGTTACTTTAATGTTCCAAACCCTGCCTAGAAACCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp GAAATTCGGTTATTGGAAACTTTTAGCGGGTGTCCATCCAAAATAAGTCATTGCTGGCGGAGTAGTACCTaGCTGTGGAAACTCGGACTA +
Preference number: 4 (lower is better)
Translates to: EIRLLETFSGCPSKISHCWRSST*LWKLGL
Trigger: TAGTCCGAGTTTCCACAGCCAGGTACTACTCCGCCA...GCAATGACTTATTTTGGATGGACACCCGCTAAAAGTTTCCAATAACCGAATTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp AGGTTTCTAGGCAGGGTTTGGAACATTAAAGTAACAGTATCTACCACCACAGTCTCCTCCCTGACAAGGTaGATGGCTCTTTGTCATTAC +
Preference number: 4 (lower is better)
Translates to: RFLGRVWNIKVTVSTTTVSSLTR*MALCHY
Trigger: GTAATGACAAAGAGCCATCCACCTTGTCAGGGAGGA...GACTGTGGTGGTAGATACTGTTACTTTAATGTTCCAAACCCTGCCTAGAAACCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp GAAATTCGGTTATTGGAAACTTTTAGCGGGTGTCCATCCAAAATAAGTCATTGCCCTTCATGGGTGCCATaGCTGCCATACTGTAGAACC +
Preference number: 4 (lower is better)
Translates to: EIRLLETFSGCPSKISHCPSWVP*LPYCRT
Trigger: GGTTCTACAGTATGGCAGCCATGGCACCCATGAAGG...GCAATGACTTATTTTGGATGGACACCCGCTAAAAGTTTCCAATAACCGAATTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp GAAATTCGGTTATTGGAAACTTTTAGCGGGTGTCCATCCAAAATAAGTCATTGCCCCAAACCAAAATCCTaGAGGTGGGTGCAAGAGCAG +
Preference number: 4 (lower is better)
Translates to: EIRLLETFSGCPSKISHCPKPKS*RWVQEQ
Trigger: CTGCTCTTGCACCCACCTCCAGGATTTTGGTTTGGG...GCAATGACTTATTTTGGATGGACACCCGCTAAAAGTTTCCAATAACCGAATTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp AGGTTTCTAGGCAGGGTTTGGAACATTAAAGTAACAGTATCTACCACCACAGTCACTGGTCTTAACAAGTaGGGACAGGAGATACGGGAA +
Preference number: 4 (lower is better)
Translates to: RFLGRVWNIKVTVSTTTVTGLNK*GQEIRE
Trigger: TTCCCGTATCTCCTGTCCCCACTTGTTAAGACCAGT...GACTGTGGTGGTAGATACTGTTACTTTAATGTTCCAAACCCTGCCTAGAAACCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp GAAATTCGGTTATTGGAAACTTTTAGCGGGTGTCCATCCAAAATAAGTCATTGCCCTTGTGGCAAGATATaGAGATCCACGAGGACAGCA +
Preference number: 4 (lower is better)
Translates to: EIRLLETFSGCPSKISHCPCGKI*RSTRTA
Trigger: TGCTGTCCTCGTGGATCTTCATATCTTGCCACAAGG...GCAATGACTTATTTTGGATGGACACCCGCTAAAAGTTTCCAATAACCGAATTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp TTAAAATCCCGGCATCTATATTCGCAGCTCTCTTGTCACAGGTTTGGCCACTATAATCCATCTCAAGCATaGACCTACACTATGCCTGTT +
Preference number: 4 (lower is better)
Translates to: LKSRHLYSQLSCHRFGHYNPSQA*TYTMPV
Trigger: AACAGGCATAGTGTAGGTTCATGCTTGAGATGGATT...ATAGTGGCCAAACCTGTGACAAGAGAGCTGCGAATATAGATGCCGGGATTTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp GGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTTCATGTTTAAGAAGATTCAGTaGCACACTGTGGTCCTGTGT +
Preference number: 4 (lower is better)
Translates to: GQNRPSTSTIIRESNTFMFKKIQ*HTVVLC
Trigger: ACACAGGACCACAGTGTGTCACTGAATCTTCTTAAA...CATGAAGGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp AAGGTTGGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTACCATTCCCAACAGTaGGAACTCTTCATATCCTAC +
Preference number: 4 (lower is better)
Translates to: KVGQNRPSTSTIIRESNTYHSQQ*ELFISY
Trigger: GTAGGATATGAAGAGTTCTCACTGTTGGGAATGGTA...GGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCCAACCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp AAGGTTGGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCCCCCAAGATATATCTTaGGATACTTCAGAGAGAAGC +
Preference number: 4 (lower is better)
Translates to: KVGQNRPSTSTIIRESNTPQDIS*DTSERS
Trigger: GCTTCTCTCTGAAGTATCTCAAGATATATCTTGGGG...GGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCCAACCTT
43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp CAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAAAATGCTTAAAGGCAAAAGAAAGCAAATTAGAGTaGGTCCTGCAGATTTCTGAG +
Preference number: 4 (lower is better)
Translates to: QESQGCFSHVQEKCLKAKESKLE*VLQISE
Trigger: CTCAGAAATCTGCAGGACTCACTCTAATTTGCTTTC...TTTTGCCTTTAAGCATTTTTCTTGCACATGGCTGAAACACCCCTGGCTCTCTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp GTACTACGCAAGTGGTTGAAGAACTTGTTCTTTTTGACTAACAATACTGACACTCCTTTGCTTGTCCCATaGATTCTGATGGGGGACTGG +
Preference number: 4 (lower is better)
Translates to: VLRKWLKNLFFLTNNTDTPLLVP*ILMGDW
Trigger: CCAGTCCCCCATCAGAATCCATGGGACAAGCAAAGG...AGTGTCAGTATTGTTAGTCAAAAAGAACAAGTTCTTCAACCACTTGCGTAGTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp GGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTTCATGACTGTGATCCCATTGTaGTCCCCAAGATATATCTTG +
Preference number: 4 (lower is better)
Translates to: GQNRPSTSTIIRESNTFMTVIPL*SPRYIL
Trigger: CAAGATATATCTTGGGGACCACAATGGGATCACAGT...CATGAAGGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp GGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTTCATGGCTTGTATCTTTGTTTaGACCTTGTGGCAAGATATG +
Preference number: 4 (lower is better)
Translates to: GQNRPSTSTIIRESNTFMACIFV*TLWQDM
Trigger: CATATCTTGCCACAAGGTTCAAACAAAGATACAAGC...CATGAAGGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp GTACTACGCAAGTGGTTGAAGAACTTGTTCTTTTTGACTAACAATACTGACACTTCGCCAAGCTCTTTCTaGAATCAGAGGCCACTGACA +
Preference number: 4 (lower is better)
Translates to: VLRKWLKNLFFLTNNTDTSPSSF*NQRPLT
Trigger: TGTCAGTGGCCTCTGATTTCAGAAAGAGCTTGGCGA...AGTGTCAGTATTGTTAGTCAAAAAGAACAAGTTCTTCAACCACTTGCGTAGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp AGGTTTCTAGGCAGGGTTTGGAACATTAAAGTAACAGTATCTACCACCACAGTCACACCTTCTGTTCCCTaGTCAAATACTTTAGGGTCA +
Preference number: 4 (lower is better)
Translates to: RFLGRVWNIKVTVSTTTVTPSVP*SNTLGS
Trigger: TGACCCTAAAGTATTTGATCAGGGAACAGAAGGTGT...GACTGTGGTGGTAGATACTGTTACTTTAATGTTCCAAACCCTGCCTAGAAACCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp TTAAAATCCCGGCATCTATATTCGCAGCTCTCTTGTCACAGGTTTGGCCACTATAGACTTTCCAAAACATaGAACTCTTCCTTAGACGTG +
Preference number: 4 (lower is better)
Translates to: LKSRHLYSQLSCHRFGHYRLSKT*NSSLDV
Trigger: CACGTCTAAGGAAGAGTTGCATGTTTTGGAAAGTCT...ATAGTGGCCAAACCTGTGACAAGAGAGCTGCGAATATAGATGCCGGGATTTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp GTACTACGCAAGTGGTTGAAGAACTTGTTCTTTTTGACTAACAATACTGACACTGTCTGCACAGTGATGTaGCAAGAAGGGGCTCATGAT +
Preference number: 4 (lower is better)
Translates to: VLRKWLKNLFFLTNNTDTVCTVM*QEGAHD
Trigger: ATCATGAGCCCCTTCTTGGCACATCACTGTGCAGAC...AGTGTCAGTATTGTTAGTCAAAAAGAACAAGTTCTTCAACCACTTGCGTAGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp AAAGGCAAAATTCCTCAAACACATGTCACAGTGTGGGAACTGAGAGCCATTCCCGACTTGAATATAATTTaGGGTACTACGCAAGTGGTT +
Preference number: 4 (lower is better)
Translates to: KGKIPQTHVTVWELRAIPDLNII*GTTQVV
Trigger: AACCACTTGCGTAGTACCCCAAATTATATTCAAGTC...GGGAATGGCTCTCAGTTCCCACACTGTGACATGTGTTTGAGGAATTTTGCCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CAA 72 bp ATCAATGACTTCTCCAAGCATTGGAGTCACAGGGACTaGAATATAATTTGGGGTACTACGCAAGTGGTTGAA +
Preference number: 4 (lower is better)
Translates to: INDFSKHWSHRD*NIIWGTTQVVE
Trigger: TTCAACCACTTGCGTAGTACCCCAAATTATATTCAAGTCCCTGTGACTCCAATGCTTGGAGAAGTCATTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR TCA 90 bp CAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAAAATGCTTAAAGGCAAAAGTTTTTCAACTTGATTaGAGAAAGTTATTCGGGGGA +
Preference number: 4 (lower is better)
Translates to: QESQGCFSHVQEKCLKAKVFQLD*RKLFGG
Trigger: TCCCCCGAATAACTTTCTTCAATCAAGTTGAAAAAC...TTTTGCCTTTAAGCATTTTTCTTGCACATGGCTGAAACACCCCTGGCTCTCTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 23 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp GTACTACGCAAGTGGTTGAAGAACTTGTTCTTTTTGACTAACAATACTGACACTGCATTTGATGGCCTGTaGTGTTTGCGAACTTCCAAG +
Preference number: 4 (lower is better)
Translates to: VLRKWLKNLFFLTNNTDTAFDGL*CLRTSK
Trigger: CTTGGAAGTTCGCAAACAGCACAGGCCATCAAATGC...AGTGTCAGTATTGTTAGTCAAAAAGAACAAGTTCTTCAACCACTTGCGTAGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp GGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTTCATGATGAAATATAGCTGCTaGTTCATGAGTCTTACTGGT +
Preference number: 4 (lower is better)
Translates to: GQNRPSTSTIIRESNTFMMKYSC*FMSLTG
Trigger: ACCAGTAAGACTCATGAAGCAGCAGCTATATTTCAT...CATGAAGGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp AAGGTTGGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCACCAATCTATTAAGATaGCATCTGAAAGCACATGGA +
Preference number: 4 (lower is better)
Translates to: KVGQNRPSTSTIIRESNTTNLLR*HLKAHG
Trigger: TCCATGTGCTTTCAGATGGCATCTTAATAGATTGGT...GGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCCAACCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp TTAAAATCCCGGCATCTATATTCGCAGCTCTCTTGTCACAGGTTTGGCCACTATTATTACAGTAAGGTCTaGCAAGAAGGAATTCAAGGA +
Preference number: 4 (lower is better)
Translates to: LKSRHLYSQLSCHRFGHYYYSKV*QEGIQG
Trigger: TCCTTGAATTCCTTCTTGGCAGACCTTACTGTAATA...ATAGTGGCCAAACCTGTGACAAGAGAGCTGCGAATATAGATGCCGGGATTTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp GAAATTCGGTTATTGGAAACTTTTAGCGGGTGTCCATCCAAAATAAGTCATTGCTCTCAGCTGCCTTTATaGAATCCTTTGCTTGTCCCA +
Preference number: 4 (lower is better)
Translates to: EIRLLETFSGCPSKISHCSQLPL*NPLLVP
Trigger: TGGGACAAGCAAAGGATTCCATAAAGGCAGCTGAGA...GCAATGACTTATTTTGGATGGACACCCGCTAAAAGTTTCCAATAACCGAATTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp GAAATTCGGTTATTGGAAACTTTTAGCGGGTGTCCATCCAAAATAAGTCATTGCGCCACTAGTGTCTTCTaGCTGGGTCTGATTAACTTT +
Preference number: 4 (lower is better)
Translates to: EIRLLETFSGCPSKISHCATSVF*LGLINF
Trigger: AAAGTTAATCAGACCCAGCCAGAAGACACTAGTGGC...GCAATGACTTATTTTGGATGGACACCCGCTAAAAGTTTCCAATAACCGAATTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp GTACTACGCAAGTGGTTGAAGAACTTGTTCTTTTTGACTAACAATACTGACACTGGTTTTGGCCACTCGTaGACTTTGTTTTGGACATGG +
Preference number: 4 (lower is better)
Translates to: VLRKWLKNLFFLTNNTDTGFGHS*TLFWTW
Trigger: CCATGTCCAAAACAAAGTCCACGAGTGGCCAAAACC...AGTGTCAGTATTGTTAGTCAAAAAGAACAAGTTCTTCAACCACTTGCGTAGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp TTAAAATCCCGGCATCTATATTCGCAGCTCTCTTGTCACAGGTTTGGCCACTATCTTTCTTTTCTTGGTTaGGCTGTTCTGAATTGTAGA +
Preference number: 4 (lower is better)
Translates to: LKSRHLYSQLSCHRFGHYLSFLG*AVLNCR
Trigger: TCTACAATTCAGAACAGCCCAACCAAGAAAAGAAAG...ATAGTGGCCAAACCTGTGACAAGAGAGCTGCGAATATAGATGCCGGGATTTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp AGAAATCTAGATCCTACTAGCCAGGAGACAGTCATTTCGCAGCAGTGGAGTCAAAAAACCTTGTTCTGGTaGTTTGTAAACTTGGATTCT +
Preference number: 4 (lower is better)
Translates to: RNLDPTSQETVISQQWSQKTLFW*FVNLDS
Trigger: AGAATCCAAGTTTACAAACCACCAGAACAAGGTTTT...TTGACTCCACTGCTGCGAAATGACTGTCTCCTGGCTAGTAGGATCTAGATTTCT
41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR TCA 90 bp GAAATTCGGTTATTGGAAACTTTTAGCGGGTGTCCATCCAAAATAAGTCATTGCTATCTCTGCAATCACTaGGTCACTAGATGTTTCCAC +
Preference number: 4 (lower is better)
Translates to: EIRLLETFSGCPSKISHCYLCNH*VTRCFH
Trigger: GTGGAAACATCTAGTGACTCAGTGATTGCAGAGATA...GCAATGACTTATTTTGGATGGACACCCGCTAAAAGTTTCCAATAACCGAATTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp AAGGTTGGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCAGCAAATTTCTTAGATaGCATGGCTTATTGATTCCA +
Preference number: 4 (lower is better)
Translates to: KVGQNRPSTSTIIRESNTSKFLR*HGLLIP
Trigger: TGGAATCAATAAGCCATGGCATCTAAGAAATTTGCT...GGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCCAACCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp GAAATTCGGTTATTGGAAACTTTTAGCGGGTGTCCATCCAAAATAAGTCATTGCCAGAGGCCACTGACATaGATAACAAACCATGCTAAA +
Preference number: 4 (lower is better)
Translates to: EIRLLETFSGCPSKISHCQRPLT*ITNHAK
Trigger: TTTAGCATGGTTTGTTATGCATGTCAGTGGCCTCTG...GCAATGACTTATTTTGGATGGACACCCGCTAAAAGTTTCCAATAACCGAATTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp AAGGTTGGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCATGGTAATATTATGCTaGCAGAGGAAACATTTGACT +
Preference number: 4 (lower is better)
Translates to: KVGQNRPSTSTIIRESNTMVILC*QRKHLT
Trigger: AGTCAAATGTTTCCTCTGGCAGCATAATATTACCAT...GGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCCAACCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CAA 72 bp GGGGTACTACGCAAGTGGTTGAAGAACTTGTTCTTTTaGACTAACAATACTGACACTGTTTCAGACTTTCAG +
Preference number: 4 (lower is better)
Translates to: GVLRKWLKNLFF*TNNTDTVSDFQ
Trigger: CTGAAAGTCTGAAACAGTGTCAGTATTGTTAGTCAAAAAGAACAAGTTCTTCAACCACTTGCGTAGTACCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
3UTR CAA 72 bp ATGACACCAACAGCAAACAATTACACTGTGATCCCATaGTGGTCCCCAAGATATATCTTGAGATACTTCAGA +
Preference number: 4 (lower is better)
Translates to: MTPTANNYTVIP*WSPRYILRYFR
Trigger: TCTGAAGTATCTCAAGATATATCTTGGGGACCACAATGGGATCACAGTGTAATTGTTTGCTGTTGGTGTCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CCA 90 bp GTACTACGCAAGTGGTTGAAGAACTTGTTCTTTTTGACTAACAATACTGACACTATTCATATGCATATCTaGACGACAGTTAACCTCCAG +
Preference number: 4 (lower is better)
Translates to: VLRKWLKNLFFLTNNTDTIHMHI*TTVNLQ
Trigger: CTGGAGGTTAACTGTCGTCCAGATATGCATATGAAT...AGTGTCAGTATTGTTAGTCAAAAAGAACAAGTTCTTCAACCACTTGCGTAGTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR GCA 90 bp GAAATTCGGTTATTGGAAACTTTTAGCGGGTGTCCATCCAAAATAAGTCATTGCTGTATGGTAATATTATaGTGCCAGAGGAAACATTTG +
Preference number: 4 (lower is better)
Translates to: EIRLLETFSGCPSKISHCCMVIL*CQRKHL
Trigger: CAAATGTTTCCTCTGGCAGCATAATATTACCATACA...GCAATGACTTATTTTGGATGGACACCCGCTAAAAGTTTCCAATAACCGAATTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp CTGAAAGGCAGCACGGCAGCACTGTCTTTGCACGGTCCATTGTGTGGTCTGCACCATTTCTCCGGAGCTTaGCACTGGGAGGAAGTGAAC +
Preference number: 5 (lower is better)
Translates to: LKGSTAALSLHGPLCGLHHFSGA*HWEEVN
Trigger: GTTCACTTCCTCCCAGTGCAAAGCTCCGGAGAAATG...GTGCAGACCACACAATGGACCGTGCAAAGACAGTGCTGCCGTGCTGCCTTTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CCA 90 bp CCCAGTGGCTCTCAGCTGCCTTTATGGAATCCTTTGCTTGTCCCATaGATTCTGATGGGGGACTGGAGGAAGCCTGACCATCATTCCTCC +
Preference number: 5 (lower is better)
Translates to: PSGSQLPLWNPLLVP*ILMGDWRKPDHHSS
Trigger: GGAGGAATGATGGTCAGGCTTCCTCCAGTCCCCCATCAGAATCCATGGGACAAGCAAAGGATTCCATAAAGGCAGCTGAGAGCCACTGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp CTGAAAGGCAGCACGGCAGCACTGTCTTTGCACGGTCCATTGTGTGGTCTGCACCGTTTCTGTTGGGTTTaGGCCACTCGTGGACTTTGT +
Preference number: 5 (lower is better)
Translates to: LKGSTAALSLHGPLCGLHRFCWV*ATRGLC
Trigger: ACAAAGTCCACGAGTGGCCAAAACCCAACAGAAACG...GTGCAGACCACACAATGGACCGTGCAAAGACAGTGCTGCCGTGCTGCCTTTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp ACCACATTTCTAGCACATTTCCAGACAACGAAGCTGGTCCCAGGACCACGCGCTGTTCCTGCGTTTCTGTaGGGTTTTGGCCACTCGTGG +
Preference number: 5 (lower is better)
Translates to: TTFLAHFQTTKLVPGPRAVPAFL*GFGHSW
Trigger: CCACGAGTGGCCAAAACCCAACAGAAACGCAGGAAC...AGCGCGTGGTCCTGGGACCAGCTTCGTTGTCTGGAAATGTGCTAGAAATGTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS TCA 90 bp GCTCTCAGCTGCCTTTATGGAATCCTTTGCTTGTCCCATGGATTCTaGTGGGGGACTGGAGGAAGCCTGACCATCATTCCTCCTCCTTGC +
Preference number: 5 (lower is better)
Translates to: ALSCLYGILCLSHGF*WGTGGSLTIIPPPC
Trigger: GCAAGGAGGAGGAATGATGGTCAGGCTTCCTCCAGTCCCCCATCAGAATCCATGGGACAAGCAAAGGATTCCATAAAGGCAGCTGAGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS GCA 90 bp AAACTCTCCCGTGGTGGTCGAAGTCTTCCGCAGAGCTGCAGTTCCTaGGTTTCTGTTGGGTTTTGGCCACTCGTGGACTTTGTTTTGGAC +
Preference number: 5 (lower is better)
Translates to: KLSRGGRSLPQSCSS*VSVGFWPLVDFVLD
Trigger: GTCCAAAACAAAGTCCACGAGTGGCCAAAACCCAACAGAAACGCAGGAACTGCAGCTCTGCGGAAGACTTCGACCACCACGGGAGAGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CCA 90 bp TCTCTCGGGACTAATCGATCACTTCCAAGAGAAACTCTCCCGTGGTaGTCGAAGTCTTCCGCAGAGCTGCAGTTCCTGCGTTTCTGTTGG +
Preference number: 5 (lower is better)
Translates to: SLGTNRSLPRETLPW*SKSSAELQFLRFCW
Trigger: CCAACAGAAACGCAGGAACTGCAGCTCTGCGGAAGACTTCGACCACCACGGGAGAGTTTCTCTTGGAAGTGATCGATTAGTCCCGAGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp GAGGACAGGATACCAGTAGGAAGGGCTGTTTCAAGTGGGGGTGGTGAGGCTGGGTACACTGTGATCCCATaGTGGTCCCCAAGATATATC +
Preference number: 5 (lower is better)
Translates to: EDRIPVGRAVSSGGGEAGYTVIP*WSPRYI
Trigger: GATATATCTTGGGGACCACAATGGGATCACAGTGTA...CCCAGCCTCACCACCCCCACTTGAAACAGCCCTTCCTACTGGTATCCTGTCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CCA 90 bp CGAAGTCTTCCGCAGAGCTGCAGTTCCTGCGTTTCTGTTGGGTTTTaGCCACTCGTGGACTTTGTTTTGGACATGGTGATGCTGACTCAC +
Preference number: 5 (lower is better)
Translates to: RSLPQSCSSCVSVGF*PLVDFVLDMVMLTH
Trigger: GTGAGTCAGCATCACCATGTCCAAAACAAAGTCCACGAGTGGCCAAAACCCAACAGAAACGCAGGAACTGCAGCTCTGCGGAAGACTTCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CCA 90 bp TGGTGGTCGAAGTCTTCCGCAGAGCTGCAGTTCCTGCGTTTCTGTTaGGTTTTGGCCACTCGTGGACTTTGTTTTGGACATGGTGATGCT +
Preference number: 5 (lower is better)
Translates to: WWSKSSAELQFLRFC*VLATRGLCFGHGDA
Trigger: AGCATCACCATGTCCAAAACAAAGTCCACGAGTGGCCAAAACCCAACAGAAACGCAGGAACTGCAGCTCTGCGGAAGACTTCGACCACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CCA 90 bp CCTCCTCTGGATGTGGCTCAGTGCCAGGACTTTAATTGTGAAGGGTaGATTTTCCCCTTCCTTCAGGAAGAAGGAAGCAGGCAATGGTGC +
Preference number: 5 (lower is better)
Translates to: PPLDVAQCQDFNCEG*IFPFLQEEGSRQWC
Trigger: GCACCATTGCCTGCTTCCTTCTTCCTGAAGGAAGGGGAAAATCCACCCTTCACAATTAAAGTCCTGGCACTGAGCCACATCCAGAGGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR CAA 90 bp GAGGACAGGATACCAGTAGGAAGGGCTGTTTCAAGTGGGGGTGGTGAGGCTGGGTCTGTACTCTTGTCATaGTTTTGGGCTTTTCTGGGT +
Preference number: 5 (lower is better)
Translates to: EDRIPVGRAVSSGGGEAGSVLLS*FWAFLG
Trigger: ACCCAGAAAAGCCCAAAACAATGACAAGAGTACAGA...CCCAGCCTCACCACCCCCACTTGAAACAGCCCTTCCTACTGGTATCCTGTCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp GAGGACAGGATACCAGTAGGAAGGGCTGTTTCAAGTGGGGGTGGTGAGGCTGGGCTGTTAAGCTGCACATaGACACATATTTGTTCCCTG +
Preference number: 5 (lower is better)
Translates to: EDRIPVGRAVSSGGGEAGLLSCT*THICSL
Trigger: CAGGGAACAAATATGTGTCAATGTGCAGCTTAACAG...CCCAGCCTCACCACCCCCACTTGAAACAGCCCTTCCTACTGGTATCCTGTCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp TGGTGGTTTGTAAACTTGGATTCTGCAGGACCCCAGAATTCCTTGGGTAGCTGCGGACCCCAGAATTCCTaGGGTAGCTGCCAGATGCTT +
Preference number: 5 (lower is better)
Translates to: WWFVNLDSAGPQNSLGSCGPQNS*GSCQML
Trigger: AAGCATCTGGCAGCTACCCAAGGAATTCTGGGGTCC...GCAGCTACCCAAGGAATTCTGGGGTCCTGCAGAATCCAAGTTTACAAACCACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR CAA 90 bp AGCGTAGCTCCGCTTTCTCACCAATGTCTGCCAGTAGACAGCTGGGTTTCCACATGGTGGTTTGTAAACTaGGATTCTGCAGGACCCCAG +
Preference number: 5 (lower is better)
Translates to: SVAPLSHQCLPVDSWVSTWWFVN*DSAGPQ
Trigger: CTGGGGTCCTGCAGAATCCAAGTTTACAAACCACCA...TGTGGAAACCCAGCTGTCTACTGGCAGACATTGGTGAGAAAGCGGAGCTACGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS CCA 90 bp ATTTCTCTCGGGACTAATCGATCACTTCCAAGAGAAACTCTCCCGTaGTGGTCGAAGTCTTCCGCAGAGCTGCAGTTCCTGCGTTTCTGT +
Preference number: 5 (lower is better)
Translates to: ISLGTNRSLPRETLP*WSKSSAELQFLRFC
Trigger: ACAGAAACGCAGGAACTGCAGCTCTGCGGAAGACTTCGACCACCACGGGAGAGTTTCTCTTGGAAGTGATCGATTAGTCCCGAGAGAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp GAGGACAGGATACCAGTAGGAAGGGCTGTTTCAAGTGGGGGTGGTGAGGCTGGGTTTAAGGACAAGGGATaGGATCTTGTGAATTCTGCA +
Preference number: 5 (lower is better)
Translates to: EDRIPVGRAVSSGGGEAGFKDKG*DLVNSA
Trigger: TGCAGAATTCACAAGATCCAATCCCTTGTCCTTAAA...CCCAGCCTCACCACCCCCACTTGAAACAGCCCTTCCTACTGGTATCCTGTCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp CATGCAACCACTCAAATAACAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAGGGACTGGGACATGCTaGAGCTACAGGCAACAACGA +
Preference number: 5 (lower is better)
Translates to: HATTQITREPGVFQPCARGTGTC*SYRQQR
Trigger: TCGTTGTTGCCTGTAGCTCAAGCATGTCCCAGTCCC...TCTTGCACATGGCTGAAACACCCCTGGCTCTCTTGTTATTTGAGTGGTTGCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp ATCCTGAAGCAAAACCTTGTTCTGGTGGTTTGTAAACTTGGATTCTGCAGGACCGGGACACCCCTGGTATaGGGAGGGCATAGATCAGCC +
Preference number: 5 (lower is better)
Translates to: ILKQNLVLVVCKLGFCRTGTPLV*GGHRSA
Trigger: GGCTGATCTATGCCCTCCCAATACCAGGGGTGTCCC...GGTCCTGCAGAATCCAAGTTTACAAACCACCAGAACAAGGTTTTGCTTCAGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS-3UTR CAA 90 bp ACCACATTTCTAGCACATTTCCAGACAACGAAGCTGGTCCCAGGACCACGCGCTCCTTTATGGAATCCTTaGCTTGTCCCATGGATTCTG +
Preference number: 5 (lower is better)
Translates to: TTFLAHFQTTKLVPGPRAPLWNP*LVPWIL
Trigger: CAGAATCCATGGGACAAGCAAAGGATTCCATAAAGG...AGCGCGTGGTCCTGGGACCAGCTTCGTTGTCTGGAAATGTGCTAGAAATGTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp CATGCAACCACTCAAATAACAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGACCCAGGATGAGGTTTTaGCTGGCCACTAGTGTCTTC +
Preference number: 5 (lower is better)
Translates to: HATTQITREPGVFQPCARPRMRF*LATSVF
Trigger: GAAGACACTAGTGGCCAGCAAAAACCTCATCCTGGG...TCTTGCACATGGCTGAAACACCCCTGGCTCTCTTGTTATTTGAGTGGTTGCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp AAAGGCAAAATTCCTCAAACACATGTCACAGTGTGGGAACTGAGAGCCATTCCCACGGCAGCACTGTCTTaGCACGGTCCATTGTGTGGT +
Preference number: 5 (lower is better)
Translates to: KGKIPQTHVTVWELRAIPTAALS*HGPLCG
Trigger: ACCACACAATGGACCGTGCAAAGACAGTGCTGCCGT...GGGAATGGCTCTCAGTTCCCACACTGTGACATGTGTTTGAGGAATTTTGCCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp ACCACATTTCTAGCACATTTCCAGACAACGAAGCTGGTCCCAGGACCACGCGCTTGGAGTCACAGGGACTaGAATATAATTTGGGGTACT +
Preference number: 5 (lower is better)
Translates to: TTFLAHFQTTKLVPGPRAWSHRD*NIIWGT
Trigger: AGTACCCCAAATTATATTCAAGTCCCTGTGACTCCA...AGCGCGTGGTCCTGGGACCAGCTTCGTTGTCTGGAAATGTGCTAGAAATGTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp AAGGTTGGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCGATGGCCTGTGCTGTTaGCGAACTTCCAAGTACTCC +
Preference number: 5 (lower is better)
Translates to: KVGQNRPSTSTIIRESNTDGLCC*RTSKYS
Trigger: GGAGTACTTGGAAGTTCGCAAACAGCACAGGCCATC...GGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCCAACCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp AAGGTTGGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTTCTTCATGCAGTCCTaGCACAGTCTCCTCCCTGAC +
Preference number: 5 (lower is better)
Translates to: KVGQNRPSTSTIIRESNTFFMQS*HSLLPD
Trigger: GTCAGGGAGGAGACTGTGCAAGGACTGCATGAAGAA...GGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCCAACCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp AAAGGCAAAATTCCTCAAACACATGTCACAGTGTGGGAACTGAGAGCCATTCCCTCTTTGCACGGTCCATaGTGTGGTCTGCACAGTGAT +
Preference number: 5 (lower is better)
Translates to: KGKIPQTHVTVWELRAIPSLHGP*CGLHSD
Trigger: ATCACTGTGCAGACCACACAATGGACCGTGCAAAGA...GGGAATGGCTCTCAGTTCCCACACTGTGACATGTGTTTGAGGAATTTTGCCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp ACCACATTTCTAGCACATTTCCAGACAACGAAGCTGGTCCCAGGACCACGCGCTAGTGAAATTCGGTTATaGGAAACTTTTAGCGGGTGT +
Preference number: 5 (lower is better)
Translates to: TTFLAHFQTTKLVPGPRASEIRL*ETFSGC
Trigger: ACACCCGCTAAAAGTTTCCAATAACCGAATTTCACT...AGCGCGTGGTCCTGGGACCAGCTTCGTTGTCTGGAAATGTGCTAGAAATGTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp AAGGTTGGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTGCAGCCCACCCCTATaGTATAAGCAGAGTCAGCTC +
Preference number: 5 (lower is better)
Translates to: KVGQNRPSTSTIIRESNTCSPPL*YKQSQL
Trigger: GAGCTGACTCTGCTTATACAATAGGGGTGGGCTGCA...GGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCCAACCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp AGGTTTCTAGGCAGGGTTTGGAACATTAAAGTAACAGTATCTACCACCACAGTCCCAGAGAGCTGCTTCTaGGTCTATCCCCTGGGTTAC +
Preference number: 5 (lower is better)
Translates to: RFLGRVWNIKVTVSTTTVPESCF*VYPLGY
Trigger: GTAACCCAGGGGATAGACCAAGAAGCAGCTCTCTGG...GACTGTGGTGGTAGATACTGTTACTTTAATGTTCCAAACCCTGCCTAGAAACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS TCA 90 bp AATTTCTTTCAGAGCATTTCTCCGGAGCTTTGCACTGGGAGGAAGTaGACTCTCTGCACACTCAGCAAAGTAATCAGACACTCCATGGAG +
Preference number: 5 (lower is better)
Translates to: NFFQSISPELCTGRK*TLCTLSKVIRHSME
Trigger: CTCCATGGAGTGTCTGATTACTTTGCTGAGTGTGCAGAGAGTTCACTTCCTCCCAGTGCAAAGCTCCGGAGAAATGCTCTGAAAGAAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CCA 90 bp TTTAAAATCCCGGCATCTATATTCGCAGCTCTCTTGTCACAGGTTTaGCCACTATGTCCTCAACTCCAACGGTACAAACCTCTTCGGTGT +
Preference number: 5 (lower is better)
Translates to: FKIPASIFAALLSQV*PLCPQLQRYKPLRC
Trigger: ACACCGAAGAGGTTTGTACCGTTGGAGTTGAGGACATAGTGGCCAAACCTGTGACAAGAGAGCTGCGAATATAGATGCCGGGATTTTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp CATGCAACCACTCAAATAACAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGACGGGCTTTATATGTTTaGTTACTGTCCAGGGTCACT +
Preference number: 5 (lower is better)
Translates to: HATTQITREPGVFQPCARRALYV*LLSRVT
Trigger: AGTGACCCTGGACAGTAACAAAACATATAAAGCCCG...TCTTGCACATGGCTGAAACACCCCTGGCTCTCTTGTTATTTGAGTGGTTGCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp CAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAAAATGCTTAAAGGCAAAACTTCTGGTCTGCGATTaGCTCGTGACACTGCTTTTT +
Preference number: 5 (lower is better)
Translates to: QESQGCFSHVQEKCLKAKLLVCD*LVTLLF
Trigger: AAAAAGCAGTGTCACGAGCAAATCGCAGACCAGAAG...TTTTGCCTTTAAGCATTTTTCTTGCACATGGCTGAAACACCCCTGGCTCTCTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp AGGTTTCTAGGCAGGGTTTGGAACATTAAAGTAACAGTATCTACCACCACAGTCTCTCTTGTCACAGGTTaGGCCACTATGTCCTCAACT +
Preference number: 5 (lower is better)
Translates to: RFLGRVWNIKVTVSTTTVSLVTG*ATMSST
Trigger: AGTTGAGGACATAGTGGCCAAACCTGTGACAAGAGA...GACTGTGGTGGTAGATACTGTTACTTTAATGTTCCAAACCCTGCCTAGAAACCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp GAAATTCGGTTATTGGAAACTTTTAGCGGGTGTCCATCCAAAATAAGTCATTGCTGTCTTCTCCTAAGGTaGGGCAGAATCGCCCATCGA +
Preference number: 5 (lower is better)
Translates to: EIRLLETFSGCPSKISHCCLLLR*GRIAHR
Trigger: TCGATGGGCGATTCTGCCCAACCTTAGGAGAAGACA...GCAATGACTTATTTTGGATGGACACCCGCTAAAAGTTTCCAATAACCGAATTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp TTAAAATCCCGGCATCTATATTCGCAGCTCTCTTGTCACAGGTTTGGCCACTATGAAGTTAGTATTCTGTaGGGCTCCCTCTTCTCCTAT +
Preference number: 5 (lower is better)
Translates to: LKSRHLYSQLSCHRFGHYEVSIL*GSLFSY
Trigger: ATAGGAGAAGAGGGAGCCCAACAGAATACTAACTTC...ATAGTGGCCAAACCTGTGACAAGAGAGCTGCGAATATAGATGCCGGGATTTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp AAAGGCAAAATTCCTCAAACACATGTCACAGTGTGGGAACTGAGAGCCATTCCCCCTACCCCCAAATGTTaGCTTCTTTGCATTTCACAA +
Preference number: 5 (lower is better)
Translates to: KGKIPQTHVTVWELRAIPPTPKC*LLCISQ
Trigger: TTGTGAAATGCAAAGAAGCAAACATTTGGGGGTAGG...GGGAATGGCTCTCAGTTCCCACACTGTGACATGTGTTTGAGGAATTTTGCCTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS GCA 90 bp GCAATCACTGAGTCACTAGATGTTTCCACAGTGTCTCTTCTGGTCTaGGATTTGCTCGTGACACTGCTTTTTGTTTCAGTTCTTTTCACA +
Preference number: 5 (lower is better)
Translates to: AITESLDVSTVSLLV*DLLVTLLFVSVLFT
Trigger: TGTGAAAAGAACTGAAACAAAAAGCAGTGTCACGAGCAAATCGCAGACCAGAAGAGACACTGTGGAAACATCTAGTGACTCAGTGATTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp CAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAAAATGCTTAAAGGCAAAAAACCAGCTTGTATCTTaGTTTGAACCTTGTGGCAAG +
Preference number: 5 (lower is better)
Translates to: QESQGCFSHVQEKCLKAKNQLVS*FEPCGK
Trigger: CTTGCCACAAGGTTCAAACAAAGATACAAGCTGGTT...TTTTGCCTTTAAGCATTTTTCTTGCACATGGCTGAAACACCCCTGGCTCTCTTG
43% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp GGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCTTCATGATAATCTTTCAGTGTTaGTGGCTAAGCCGGTTTGCT +
Preference number: 5 (lower is better)
Translates to: GQNRPSTSTIIRESNTFMIIFQC*WLSRFA
Trigger: AGCAAACCGGCTTAGCCACAAACACTGAAAGATTAT...CATGAAGGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp CAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAAAATGCTTAAAGGCAAAAGGACTTGAATATAATTaGGGGTACTACGCAAGTGGT +
Preference number: 5 (lower is better)
Translates to: QESQGCFSHVQEKCLKAKGLEYN*GYYASG
Trigger: ACCACTTGCGTAGTACCCCAAATTATATTCAAGTCC...TTTTGCCTTTAAGCATTTTTCTTGCACATGGCTGAAACACCCCTGGCTCTCTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp TTAAAATCCCGGCATCTATATTCGCAGCTCTCTTGTCACAGGTTTGGCCACTATGTACTACGCAAGTGGTaGAAGAACTTGTTCTTTTTG +
Preference number: 5 (lower is better)
Translates to: LKSRHLYSQLSCHRFGHYVLRKW*KNLFFL
Trigger: CAAAAAGAACAAGTTCTTCAACCACTTGCGTAGTAC...ATAGTGGCCAAACCTGTGACAAGAGAGCTGCGAATATAGATGCCGGGATTTTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp CAAGAGAGCCAGGGGTGTTTCAGCCATGTGCAAGAAAAATGCTTAAAGGCAAAATCCCCAAGATATATCTaGAGATACTTCAGAGAGAAG +
Preference number: 5 (lower is better)
Translates to: QESQGCFSHVQEKCLKAKSPRYI*RYFREK
Trigger: CTTCTCTCTGAAGTATCTCAAGATATATCTTGGGGA...TTTTGCCTTTAAGCATTTTTCTTGCACATGGCTGAAACACCCCTGGCTCTCTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS TCA 90 bp TCTGCATTTGATGGCCTGTGCTGTTTGCGAACTTCCAAGTACTCCTaGACTCTTGAATCAATGGTTTCTTTTAACAGTAAACAGACTTCC +
Preference number: 5 (lower is better)
Translates to: SAFDGLCCLRTSKYS*TLESMVSFNSKQTS
Trigger: GGAAGTCTGTTTACTGTTAAAAGAAACCATTGATTCAAGAGTTCAGGAGTACTTGGAAGTTCGCAAACAGCACAGGCCATCAAATGCAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp AAGGTTGGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCAGCTTGTATCTTTGTTaGAACCTTGTGGCAAGATAT +
Preference number: 5 (lower is better)
Translates to: KVGQNRPSTSTIIRESNTSLYLC*NLVARY
Trigger: ATATCTTGCCACAAGGTTCAAACAAAGATACAAGCT...GGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCCAACCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp GTACTACGCAAGTGGTTGAAGAACTTGTTCTTTTTGACTAACAATACTGACACTCTCGTGGACTTTGTTTaGGACATGGTGATGCTGACT +
Preference number: 5 (lower is better)
Translates to: VLRKWLKNLFFLTNNTDTLVDFV*DMVMLT
Trigger: AGTCAGCATCACCATGTCCAAAACAAAGTCCACGAG...AGTGTCAGTATTGTTAGTCAAAAAGAACAAGTTCTTCAACCACTTGCGTAGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp AAGGTTGGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCGAAAAATCATACAGATaGTTCCCAGACCTTTCTTGT +
Preference number: 5 (lower is better)
Translates to: KVGQNRPSTSTIIRESNTEKSYR*FPDLSC
Trigger: ACAAGAAAGGTCTGGGAACAATCTGTATGATTTTTC...GGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCCAACCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp AAGGTTGGGCAGAATCGCCCATCGACTTCAACAATTATAAGGGAAAGTAACACCATGAATTCTCTTGTCTaGACAAACCAAGCATGGAAA +
Preference number: 5 (lower is better)
Translates to: KVGQNRPSTSTIIRESNTMNSLV*TNQAWK
Trigger: TTTCCATGCTTGGTTTGTCAAGACAAGAGAATTCAT...GGTGTTACTTTCCCTTATAATTGTTGAAGTCGATGGGCGATTCTGCCCAACCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS TCA 90 bp GACTTCCTCTTTCTTCTGTTCAGAAAACCAGCTTGTATCTTTGTTTaGACCTTGTGGCAAGATATGAAGATCCACGAGGACAGCAAAATT +
Preference number: 5 (lower is better)
Translates to: DFLFLLFRKPACIFV*TLWQDMKIHEDSKI
Trigger: AATTTTGCTGTCCTCGTGGATCTTCATATCTTGCCACAAGGTTCAAACAAAGATACAAGCTGGTTTTCTGAACAGAAGAAAGAGGAAGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS TCA 90 bp TCAGAAAACCAGCTTGTATCTTTGTTTGAACCTTGTGGCAAGATATaGAGATCCACGAGGACAGCAAAATTCCCACATTTAACAGCAAAT +
Preference number: 5 (lower is better)
Translates to: SENQLVSLFEPCGKI*RSTRTAKFPHLTAN
Trigger: ATTTGCTGTTAAATGTGGGAATTTTGCTGTCCTCGTGGATCTTCATATCTTGCCACAAGGTTCAAACAAAGATACAAGCTGGTTTTCTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS-3UTR CAA 90 bp GTACTACGCAAGTGGTTGAAGAACTTGTTCTTTTTGACTAACAATACTGACACTCATCCATTTACCCCTTaGTACTTCCAAATATCCAAA +
Preference number: 5 (lower is better)
Translates to: VLRKWLKNLFFLTNNTDTHPFTP*YFQISK
Trigger: TTTGGATATTTGGAAGTACAAAGGGGTAAATGGATG...AGTGTCAGTATTGTTAGTCAAAAAGAACAAGTTCTTCAACCACTTGCGTAGTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS GCA 72 bp ATGGTGATGCTGACTCACAGCTACAGACGGGGCTCCTaGTTAGAAGCCCTGTCTTTAACCGCTCCCCAGGAT +
Preference number: 6 (lower is better)
Translates to: MVMLTHSYRRGS*LEALSLTAPQD
Trigger: ATCCTGGGGAGCGGTTAAAGACAGGGCTTCTAAGCAGGAGCCCCGTCTGTAGCTGTGAGTCAGCATCACCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS GCA 72 bp CGTGGTGGTCGAAGTCTTCCGCAGAGCTGCAGTTCCTaGGTTTCTGTTGGGTTTTGGCCACTCGTGGACTTT +
Preference number: 6 (lower is better)
Translates to: RGGRSLPQSCSS*VSVGFWPLVDF
Trigger: AAAGTCCACGAGTGGCCAAAACCCAACAGAAACGCAGGAACTGCAGCTCTGCGGAAGACTTCGACCACCACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CAA 90 bp CAGACCTATGATGGTGGCGGGGTTTGGGCTCGGGCTTTATATGTTTaGTTACTGTCCAGGGTCACTGGCGGAGTAGTACCTGGCTGTGGA +
Preference number: 6 (lower is better)
Translates to: QTYDGGGVWARALYV*LLSRVTGGVVPGCG
Trigger: TCCACAGCCAGGTACTACTCCGCCAGTGACCCTGGACAGTAACAAAACATATAAAGCCCGAGCCCAAACCCCGCCACCATCATAGGTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS TCA 72 bp CTGCTTAGAAGCCCTGTCTTTAACCGCTCCCCAGGATaGGGTTTTTGCTGGCCACTAGTGTCTTCTGGCTGG +
Preference number: 6 (lower is better)
Translates to: LLRSPVFNRSPG*GFCWPLVSSGW
Trigger: CCAGCCAGAAGACACTAGTGGCCAGCAAAAACCTCATCCTGGGGAGCGGTTAAAGACAGGGCTTCTAAGCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CCA 72 bp GGGACTAATCGATCACTTCCAAGAGAAACTCTCCCGTaGTGGTCGAAGTCTTCCGCAGAGCTGCAGTTCCTG +
Preference number: 6 (lower is better)
Translates to: GTNRSLPRETLP*WSKSSAELQFL
Trigger: CAGGAACTGCAGCTCTGCGGAAGACTTCGACCACCACGGGAGAGTTTCTCTTGGAAGTGATCGATTAGTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CAA 72 bp GATGGTGGCGGGGTTTGGGCTCGGGCTTTATATGTTTaGTTACTGTCCAGGGTCACTGGCGGAGTAGTACCT +
Preference number: 6 (lower is better)
Translates to: DGGGVWARALYV*LLSRVTGGVVP
Trigger: AGGTACTACTCCGCCAGTGACCCTGGACAGTAACAAAACATATAAAGCCCGAGCCCAAACCCCGCCACCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CAA 90 bp AGTTCCTGCGTTTCTGTTGGGTTTTGGCCACTCGTGGACTTTGTTTaGGACATGGTGATGCTGACTCACAGCTACAGACGGGGCTCCTGC +
Preference number: 6 (lower is better)
Translates to: SSCVSVGFWPLVDFV*DMVMLTHSYRRGSC
Trigger: GCAGGAGCCCCGTCTGTAGCTGTGAGTCAGCATCACCATGTCCAAAACAAAGTCCACGAGTGGCCAAAACCCAACAGAAACGCAGGAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS TCA 72 bp TGTCCCATGGATTCTGATGGGGGACTGGAGGAAGCCTaGCCATCATTCCTCCTCCTTGCTATCTCTGCAATC +
Preference number: 6 (lower is better)
Translates to: CPMDSDGGLEEA*PSFLLLAISAI
Trigger: GATTGCAGAGATAGCAAGGAGGAGGAATGATGGTCAGGCTTCCTCCAGTCCCCCATCAGAATCCATGGGACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CCA 72 bp CCGCAGAGCTGCAGTTCCTGCGTTTCTGTTGGGTTTTaGCCACTCGTGGACTTTGTTTTGGACATGGTGATG +
Preference number: 6 (lower is better)
Translates to: PQSCSSCVSVGF*PLVDFVLDMVM
Trigger: CATCACCATGTCCAAAACAAAGTCCACGAGTGGCCAAAACCCAACAGAAACGCAGGAACTGCAGCTCTGCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CCA 72 bp ACTAATCGATCACTTCCAAGAGAAACTCTCCCGTGGTaGTCGAAGTCTTCCGCAGAGCTGCAGTTCCTGCGT +
Preference number: 6 (lower is better)
Translates to: TNRSLPRETLPW*SKSSAELQFLR
Trigger: ACGCAGGAACTGCAGCTCTGCGGAAGACTTCGACCACCACGGGAGAGTTTCTCTTGGAAGTGATCGATTAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CAA 90 bp TCGAAGTCTTCCGCAGAGCTGCAGTTCCTGCGTTTCTGTTGGGTTTaGGCCACTCGTGGACTTTGTTTTGGACATGGTGATGCTGACTCA +
Preference number: 6 (lower is better)
Translates to: SKSSAELQFLRFCWV*ATRGLCFGHGDADS
Trigger: TGAGTCAGCATCACCATGTCCAAAACAAAGTCCACGAGTGGCCAAAACCCAACAGAAACGCAGGAACTGCAGCTCTGCGGAAGACTTCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS GCA 72 bp CAGCTTTTGAACAGGAAGCCCCCAGTGGCTCTCAGCTaGCTTTATGGAATCCTTTGCTTGTCCCATGGATTC +
Preference number: 6 (lower is better)
Translates to: QLLNRKPPVALS*LYGILCLSHGF
Trigger: GAATCCATGGGACAAGCAAAGGATTCCATAAAGGCAGCTGAGAGCCACTGGGGGCTTCCTGTTCAAAAGCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CAA 72 bp TCCGCAGAGCTGCAGTTCCTGCGTTTCTGTTGGGTTTaGGCCACTCGTGGACTTTGTTTTGGACATGGTGAT +
Preference number: 6 (lower is better)
Translates to: SAELQFLRFCWV*ATRGLCFGHGD
Trigger: ATCACCATGTCCAAAACAAAGTCCACGAGTGGCCAAAACCCAACAGAAACGCAGGAACTGCAGCTCTGCGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CAA 72 bp GAAGTCTTCCGCAGAGCTGCAGTTCCTGCGTTTCTGTaGGGTTTTGGCCACTCGTGGACTTTGTTTTGGACA +
Preference number: 6 (lower is better)
Translates to: EVFRRAAVPAFL*GFGHSWTLFWT
Trigger: TGTCCAAAACAAAGTCCACGAGTGGCCAAAACCCAACAGAAACGCAGGAACTGCAGCTCTGCGGAAGACTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS TCA 72 bp CAGAGCATTTCTCCGGAGCTTTGCACTGGGAGGAAGTaGACTCTCTGCACACTCAGCAAAGTAATCAGACAC +
Preference number: 6 (lower is better)
Translates to: QSISPELCTGRK*TLCTLSKVIRH
Trigger: GTGTCTGATTACTTTGCTGAGTGTGCAGAGAGTTCACTTCCTCCCAGTGCAAAGCTCCGGAGAAATGCTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS TCA 72 bp TGCCTTTATGGAATCCTTTGCTTGTCCCATGGATTCTaGTGGGGGACTGGAGGAAGCCTGACCATCATTCCT +
Preference number: 6 (lower is better)
Translates to: CLYGILCLSHGF*WGTGGSLTIIP
Trigger: AGGAATGATGGTCAGGCTTCCTCCAGTCCCCCATCAGAATCCATGGGACAAGCAAAGGATTCCATAAAGGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CCA 72 bp TCGGGCTTTATATGTTTTGTTACTGTCCAGGGTCACTaGCGGAGTAGTACCTGGCTGTGGAAACTCGGACTA +
Preference number: 6 (lower is better)
Translates to: SGFICFVTVQGH*RSSTWLWKLGL
Trigger: TAGTCCGAGTTTCCACAGCCAGGTACTACTCCGCCAGTGACCCTGGACAGTAACAAAACATATAAAGCCCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CCA 72 bp AAGTCTTCCGCAGAGCTGCAGTTCCTGCGTTTCTGTTaGGTTTTGGCCACTCGTGGACTTTGTTTTGGACAT +
Preference number: 6 (lower is better)
Translates to: KSSAELQFLRFC*VLATRGLCFGH
Trigger: ATGTCCAAAACAAAGTCCACGAGTGGCCAAAACCCAACAGAAACGCAGGAACTGCAGCTCTGCGGAAGACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CAA 72 bp GTTTCTGTTGGGTTTTGGCCACTCGTGGACTTTGTTTaGGACATGGTGATGCTGACTCACAGCTACAGACGG +
Preference number: 6 (lower is better)
Translates to: VSVGFWPLVDFV*DMVMLTHSYRR
Trigger: CCGTCTGTAGCTGTGAGTCAGCATCACCATGTCCAAAACAAAGTCCACGAGTGGCCAAAACCCAACAGAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CCA 72 bp CAATTTCTTTCAGAGCATTTCTCCGGAGCTTTGCACTaGGAGGAAGTGAACTCTCTGCACACTCAGCAAAGT +
Preference number: 6 (lower is better)
Translates to: QFLSEHFSGALH*EEVNSLHTQQS
Trigger: ACTTTGCTGAGTGTGCAGAGAGTTCACTTCCTCCCAGTGCAAAGCTCCGGAGAAATGCTCTGAAAGAAATTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS GCA 72 bp GAGTCACTAGATGTTTCCACAGTGTCTCTTCTGGTCTaGGATTTGCTCGTGACACTGCTTTTTGTTTCAGTT +
Preference number: 6 (lower is better)
Translates to: ESLDVSTVSLLV*DLLVTLLFVSV
Trigger: AACTGAAACAAAAAGCAGTGTCACGAGCAAATCGCAGACCAGAAGAGACACTGTGGAAACATCTAGTGACTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CCA 72 bp ATTTTCCCCTTCCTTCAGGAAGAAGGAAGCAGGCAATaGTGCTCTGGTTATCCAAATCTTCATTCTGACTTG +
Preference number: 6 (lower is better)
Translates to: IFPFLQEEGSRQ*CSGYPNLHSDL
Trigger: CAAGTCAGAATGAAGATTTGGATAACCAGAGCACCATTGCCTGCTTCCTTCTTCCTGAAGGAAGGGGAAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000488816.1
CDS CAA 72 bp CTAGATGTTTCCACAGTGTCTCTTCTGGTCTGCGATTaGCTCGTGACACTGCTTTTTGTTTCAGTTCTTTTC +
Preference number: 6 (lower is better)
Translates to: LDVSTVSLLVCD*LVTLLFVSVLF
Trigger: GAAAAGAACTGAAACAAAAAGCAGTGTCACGAGCAAATCGCAGACCAGAAGAGACACTGTGGAAACATCTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CAA 90 bp ACTGAGTCACTAGATGTTTCCACAGTGTCTCTTCTGGTCTGCGATTaGCTCGTGACACTGCTTTTTGTTTCAGTTCTTTTCACAATTTCT +
Preference number: 6 (lower is better)
Translates to: TESLDVSTVSLLVCD*LVTLLFVSVLFTIS
Trigger: AGAAATTGTGAAAAGAACTGAAACAAAAAGCAGTGTCACGAGCAAATCGCAGACCAGAAGAGACACTGTGGAAACATCTAGTGACTCAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CAA 90 bp AGACTTCCTCTTTCTTCTGTTCAGAAAACCAGCTTGTATCTTTGTTaGAACCTTGTGGCAAGATATGAAGATCCACGAGGACAGCAAAAT +
Preference number: 6 (lower is better)
Translates to: RLPLSSVQKTSLYLC*NLVARYEDPRGQQN
Trigger: ATTTTGCTGTCCTCGTGGATCTTCATATCTTGCCACAAGGTTCAAACAAAGATACAAGCTGGTTTTCTGAACAGAAGAAAGAGGAAGTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CAA 90 bp TTGATGGCCTGTGCTGTTTGCGAACTTCCAAGTACTCCTGAACTCTaGAATCAATGGTTTCTTTTAACAGTAAACAGACTTCCTCTTTCT +
Preference number: 6 (lower is better)
Translates to: LMACAVCELPSTPEL*NQWFLLTVNRLPLS
Trigger: AGAAAGAGGAAGTCTGTTTACTGTTAAAAGAAACCATTGATTCAAGAGTTCAGGAGTACTTGGAAGTTCGCAAACAGCACAGGCCATCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS TCA 72 bp CATTTAACAGCAAATTTCTTAGATGCCATGGCTTATTaGTTCCACAGTAACTACAGACCTATGATGGTGGCG +
Preference number: 6 (lower is better)
Translates to: HLTANFLDAMAY*FHSNYRPMMVA
Trigger: CGCCACCATCATAGGTCTGTAGTTACTGTGGAATCAATAAGCCATGGCATCTAAGAAATTTGCTGTTAAATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS TCA 72 bp TTTCTTCTGTTCAGAAAACCAGCTTGTATCTTTGTTTaGACCTTGTGGCAAGATATGAAGATCCACGAGGAC +
Preference number: 6 (lower is better)
Translates to: FLLFRKPACIFV*TLWQDMKIHED
Trigger: GTCCTCGTGGATCTTCATATCTTGCCACAAGGTTCAAACAAAGATACAAGCTGGTTTTCTGAACAGAAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10
CDS CAA 72 bp CTTTCTTCTGTTCAGAAAACCAGCTTGTATCTTTGTTaGAACCTTGTGGCAAGATATGAAGATCCACGAGGA +
Preference number: 6 (lower is better)
Translates to: LSSVQKTSLYLC*NLVARYEDPRG
Trigger: TCCTCGTGGATCTTCATATCTTGCCACAAGGTTCAAACAAAGATACAAGCTGGTTTTCTGAACAGAAGAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334534.10