Pregenerated sensors for SLIT2-IT1 (Homo sapiens)

Ensembl gene IDs: ENSG00000248228

Ensembl transcript IDs: ENST00000515882.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TGCCAGCACTCGTCAGAAGATAACCACATTATCATATTCGGAGAATaGTTCCCACTGGCTCCAGATCCCATTCCCAAGGGTCAGGATTCA	+
Preference number: 5 (lower is better) Translates to: CQHSSEDNHIIIFGE*FPLAPDPIPKGQDS Trigger: TGAATCCTGACCCTTGGGAATGGGATCTGGAGCCAGTGGGAAGCATTCTCCGAATATGATAATGTGGTTATCTTCTGACGAGTGCTGGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515882.2
CDS GCA 90 bp	GTAAAGTACTTCAGAAAGGTTTGGATCTCTCGCTCCATGAGGTCCTaGAGTTGGAAGAATAGCAGGATACAGTGCAGAGTTGTCTCAGGG	+
Preference number: 5 (lower is better) Translates to: VKYFRKVWISRSMRS*SWKNSRIQCRVVSG Trigger: CCCTGAGACAACTCTGCACTGTATCCTGCTATTCTTCCAACTGCAGGACCTCATGGAGCGAGAGATCCAAACCTTTCTGAAGTACTTTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515882.2
CDS CCA 90 bp	TACTTCAGAAAGGTTTGGATCTCTCGCTCCATGAGGTCCTGCAGTTaGAAGAATAGCAGGATACAGTGCAGAGTTGTCTCAGGGCTTAGT	+
Preference number: 5 (lower is better) Translates to: YFRKVWISRSMRSCS*KNSRIQCRVVSGLS Trigger: ACTAAGCCCTGAGACAACTCTGCACTGTATCCTGCTATTCTTCCAACTGCAGGACCTCATGGAGCGAGAGATCCAAACCTTTCTGAAGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515882.2
CDS CCA 90 bp	GCACAGTGCAGCGTGCTGACAGTCAGGAGGCACAGTAACACAGAATaGCTTTGTTGGCTTCCAATTGATTCAATCCTGAGTAGCATGAAA	+
Preference number: 5 (lower is better) Translates to: AQCSVLTVRRHSNTE*LCWLPIDSILSSMK Trigger: TTTCATGCTACTCAGGATTGAATCAATTGGAAGCCAACAAAGCCATTCTGTGTTACTGTGCCTCCTGACTGTCAGCACGCTGCACTGTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515882.2
CDS GCA 90 bp	TGTTTTTATAAAAATGCCTTCTGGCAGAATTATCTAAATGCACAGTaGAGCGTGCTGACAGTCAGGAGGCACAGTAACACAGAATGGCTT	+
Preference number: 5 (lower is better) Translates to: CFYKNAFWQNYLNAQ*SVLTVRRHSNTEWL Trigger: AAGCCATTCTGTGTTACTGTGCCTCCTGACTGTCAGCACGCTGCACTGTGCATTTAGATAATTCTGCCAGAAGGCATTTTTATAAAAACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000515882.2
CDS GCA 90 bp	GGATTCATTGTGTTAAAATTGCCTACAGTATTCCATATAGTGCCATaGTGTATGGGTTTGAAGCCTAGGAGCAATAGGCTATTCCATATA	+
Preference number: 5 (lower is better) Translates to: GFIVLKLPTVFHIVP*CMGLKPRSNRLFHI Trigger: TATATGGAATAGCCTATTGCTCCTAGGCTTCAAACCCATACAGCATGGCACTATATGGAATACTGTAGGCAATTTTAACACAATGAATCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515882.2
CDS CCA 72 bp	AAGGTTTGGATCTCTCGCTCCATGAGGTCCTGCAGTTaGAAGAATAGCAGGATACAGTGCAGAGTTGTCTCA	+
Preference number: 6 (lower is better) Translates to: KVWISRSMRSCS*KNSRIQCRVVS Trigger: TGAGACAACTCTGCACTGTATCCTGCTATTCTTCCAACTGCAGGACCTCATGGAGCGAGAGATCCAAACCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515882.2
CDS GCA 72 bp	TCGTCAGAAGATAACCACATTATCATATTCGGAGAATaGTTCCCACTGGCTCCAGATCCCATTCCCAAGGGT	+
Preference number: 6 (lower is better) Translates to: SSEDNHIIIFGE*FPLAPDPIPKG Trigger: ACCCTTGGGAATGGGATCTGGAGCCAGTGGGAAGCATTCTCCGAATATGATAATGTGGTTATCTTCTGACGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515882.2
CDS GCA 72 bp	AAAAATGCCTTCTGGCAGAATTATCTAAATGCACAGTaGAGCGTGCTGACAGTCAGGAGGCACAGTAACACA	+
Preference number: 6 (lower is better) Translates to: KNAFWQNYLNAQ*SVLTVRRHSNT Trigger: TGTGTTACTGTGCCTCCTGACTGTCAGCACGCTGCACTGTGCATTTAGATAATTCTGCCAGAAGGCATTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000515882.2

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