Pregenerated sensors for SLCO1B7 (Homo sapiens)

Ensembl gene IDs: ENSG00000205754

Ensembl transcript IDs: ENST00000541784.1, ENST00000545916.1

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TTTGTTTCTGTTAGTGGTCTTATCACAACGGTGCATACATTTCAGTaGTCTGTCCCTAAGTCAATTTTTATCTGTAGTGCATGGTTTCAC	+
Preference number: 5 (lower is better) Translates to: FVSVSGLITTVHTFQ*SVPKSIFICSAWFH Trigger: GTGAAACCATGCACTACAGATAAAAATTGACTTAGGGACAGACCACTGAAATGTATGCACCGTTGTGATAAGACCACTAACAGAAACAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000541784.1
CDS CAA 90 bp	AATCCCACTACTGGGTATATGGCCAAAGAAAATGAAATAAATATGTaGAAGAGTCATTCTGCACTTTCATGTTTATTGCAGCACTGTTCA	+
Preference number: 6 (lower is better) Translates to: NPTTGYMAKENEINM*KSHSALSCLLQHCS Trigger: TGAACAGTGCTGCAATAAACATGAAAGTGCAGAATGACTCTTCAACATATTTATTTCATTTTCTTTGGCCATATACCCAGTAGTGGGATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000545916.1
CDS CAA 72 bp	AATATGTTGAAGAGTCATTCTGCACTTTCATGTTTATaGCAGCACTGTTCATATTATCCAAGGCATGTATTC	+
Preference number: 6 (lower is better) Translates to: NMLKSHSALSCL*QHCSYYPRHVF Trigger: GAATACATGCCTTGGATAATATGAACAGTGCTGCAATAAACATGAAAGTGCAGAATGACTCTTCAACATATT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000545916.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu