Pregenerated sensors for SLC6A8 (Homo sapiens)
Ensembl gene IDs: ENSG00000130821Ensembl transcript IDs: ENST00000253122.10, ENST00000430077.6, ENST00000485324.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AGTCTGGGGCTGGGGACCACACACGCACATCCACACAACAGACTCACACACGCAAAGCAGGGGCTGCTATaGCTACCAGAGGTGAGCTGG | + |
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Preference number: 2 (lower is better) Translates to: SLGLGTTHAHPHNRLTHAKQGLL*LPEVSW Trigger: CCAGCTCACCTCTGGTAGCCATAGCAGCCCCTGCTT...TGCGTGTGTGAGTCTGTTGTGTGGATGTGCGTGTGTGGTCCCCAGCCCCAGACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000253122.10 |
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| CDS-3UTR TCA 90 bp | TCTCCTCCCTCCCGTCTCTCCCTCCTTCCCTTCCTCACATTTCCCAAGCTGCCAGGCCAGGCCCGGCCCTaGCTCTGCCACCTTGGAGAT | + |
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Preference number: 4 (lower is better) Translates to: SPPSRLSLLPFLTFPKLPGQARP*LCHLGD Trigger: ATCTCCAAGGTGGCAGAGTCAGGGCCGGGCCTGGCC...TGGCAGCTTGGGAAATGTGAGGAAGGGAAGGAGGGAGAGACGGGAGGGAGGAGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000253122.10 |
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| CDS-3UTR CCA 90 bp | TCTCCTCCCTCCCGTCTCTCCCTCCTTCCCTTCCTCACATTTCCCAAGCTGCCAGCGGCACGCACAGCATaGAGGACAGGGCGAAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: SPPSRLSLLPFLTFPKLPAARTA*RTGRRP Trigger: GGGCCTTCGCCCTGTCCTCCATGCTGTGCGTGCCGC...TGGCAGCTTGGGAAATGTGAGGAAGGGAAGGAGGGAGAGACGGGAGGGAGGAGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000253122.10 |
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| CDS-3UTR GCA 90 bp | AGTCTGGGGCTGGGGACCACACACGCACATCCACACAACAGACTCACACACGCAGGCTGGGTCAGGTGCTaGCAGCGCTCAGCCATGGTG | + |
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Preference number: 4 (lower is better) Translates to: SLGLGTTHAHPHNRLTHAGWVRC*QRSAMV Trigger: CACCATGGCTGAGCGCTGGCAGCACCTGACCCAGCC...TGCGTGTGTGAGTCTGTTGTGTGGATGTGCGTGTGTGGTCCCCAGCCCCAGACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000253122.10 |
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| CDS-3UTR GCA 90 bp | AGTCTGGGGCTGGGGACCACACACGCACATCCACACAACAGACTCACACACGCAATGGGCTGGGTCAGGTaGTGCCAGCGCTCAGCCATG | + |
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Preference number: 4 (lower is better) Translates to: SLGLGTTHAHPHNRLTHAMGWVR*CQRSAM Trigger: CATGGCTGAGCGCTGGCAGCACCTGACCCAGCCCAT...TGCGTGTGTGAGTCTGTTGTGTGGATGTGCGTGTGTGGTCCCCAGCCCCAGACT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000253122.10 |
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| CDS-3UTR TCA 90 bp | TCTCCTCCCTCCCGTCTCTCCCTCCTTCCCTTCCTCACATTTCCCAAGCTGCCACGTAGCCCAGGCCTTTaGACAGGGGACAGATGTTCC | + |
|
Preference number: 4 (lower is better) Translates to: SPPSRLSLLPFLTFPKLPRSPGL*TGDRCS Trigger: GGAACATCTGTCCCCTGTTCAAAGGCCTGGGCTACG...TGGCAGCTTGGGAAATGTGAGGAAGGGAAGGAGGGAGAGACGGGAGGGAGGAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000253122.10 |
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| CDS-3UTR GCA 90 bp | TCTCCTCCCTCCCGTCTCTCCCTCCTTCCCTTCCTCACATTTCCCAAGCTGCCATATTTGCCTTGGTTCTaGTGCCCCTCCCCTGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: SPPSRLSLLPFLTFPKLPYLPWF*CPSPAS Trigger: GGAGGCAGGGGAGGGGCAGCAGAACCAAGGCAAATA...TGGCAGCTTGGGAAATGTGAGGAAGGGAAGGAGGGAGAGACGGGAGGGAGGAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000253122.10 |
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| CDS-3UTR CCA 90 bp | TCTCCTCCCTCCCGTCTCTCCCTCCTTCCCTTCCTCACATTTCCCAAGCTGCCAAAGCAGGGGCTGCTATaGCTACCAGAGGTGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: SPPSRLSLLPFLTFPKLPKQGLL*LPEVSW Trigger: CCAGCTCACCTCTGGTAGCCATAGCAGCCCCTGCTT...TGGCAGCTTGGGAAATGTGAGGAAGGGAAGGAGGGAGAGACGGGAGGGAGGAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000253122.10 |
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| CDS-3UTR CCA 90 bp | AGTCTGGGGCTGGGGACCACACACGCACATCCACACAACAGACTCACACACGCAAATCCAGTCTGGGGCTaGGGACCACACACGCACATC | + |
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Preference number: 4 (lower is better) Translates to: SLGLGTTHAHPHNRLTHANPVWG*GPHTHI Trigger: GATGTGCGTGTGTGGTCCCCAGCCCCAGACTGGATT...TGCGTGTGTGAGTCTGTTGTGTGGATGTGCGTGTGTGGTCCCCAGCCCCAGACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000253122.10 |
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| CDS-3UTR TCA 90 bp | AGTCTGGGGCTGGGGACCACACACGCACATCCACACAACAGACTCACACACGCACCAGAGGTGAGCTGGTaGTGTGAGCTGAGTTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: SLGLGTTHAHPHNRLTHAPEVSW*CELSCH Trigger: GTGACAACTCAGCTCACATCACCAGCTCACCTCTGG...TGCGTGTGTGAGTCTGTTGTGTGGATGTGCGTGTGTGGTCCCCAGCCCCAGACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000253122.10 |
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| CDS-3UTR GCA 90 bp | AGTCTGGGGCTGGGGACCACACACGCACATCCACACAACAGACTCACACACGCATGGAGGTGCGGGAAGTaGATCCACCTTAAGCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: SLGLGTTHAHPHNRLTHAWRCGK*IHLKPG Trigger: TCCAGGCTTAAGGTGGATGCACTTCCCGCACCTCCA...TGCGTGTGTGAGTCTGTTGTGTGGATGTGCGTGTGTGGTCCCCAGCCCCAGACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000253122.10 |
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| CDS-3UTR TCA 90 bp | AGTCTGGGGCTGGGGACCACACACGCACATCCACACAACAGACTCACACACGCAGGTGAGCTGGTGATGTaGGCTGAGTTGTCACATGAC | + |
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Preference number: 4 (lower is better) Translates to: SLGLGTTHAHPHNRLTHAGELVM*AELSHD Trigger: GTCATGTGACAACTCAGCTCACATCACCAGCTCACC...TGCGTGTGTGAGTCTGTTGTGTGGATGTGCGTGTGTGGTCCCCAGCCCCAGACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000253122.10 |
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| CDS-3UTR CCA 90 bp | TCTCCTCCCTCCCGTCTCTCCCTCCTTCCCTTCCTCACATTTCCCAAGCTGCCATCCACACCTACAAACTaGCTGTCGAGACCAAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: SPPSRLSLLPFLTFPKLPSTPTN*LSRPSS Trigger: GCTGCTTGGTCTCGACAGCCAGTTTGTAGGTGTGGA...TGGCAGCTTGGGAAATGTGAGGAAGGGAAGGAGGGAGAGACGGGAGGGAGGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000253122.10 |
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| CDS TCA 72 bp | AAGCAGGGGCTGCTATGGCTACCAGAGGTGAGCTGGTaGTGTGAGCTGAGTTGTCACATGACACTCTCCACC | + |
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Preference number: 6 (lower is better) Translates to: KQGLLWLPEVSW*CELSCHMTLST Trigger: GGTGGAGAGTGTCATGTGACAACTCAGCTCACATCACCAGCTCACCTCTGGTAGCCATAGCAGCCCCTGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000253122.10 ENST00000430077.6 ENST00000485324.1 |
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