RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SKAP1 (Homo sapiens)

Ensembl gene IDs: ENSG00000141293

Ensembl transcript IDs: ENST00000336915.11, ENST00000579336.1, ENST00000579476.5, ENST00000581400.2, ENST00000581419.1, ENST00000583844.5, ENST00000584709.5, ENST00000584924.5

Found 332 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AAAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTaGGAACTTTTGATGATCAGTTTCCTCATAAAGGCAGGAGAGAGG +
Preference number: 1 (lower is better)
Translates to: KERSPRRWWGGRSRE*ELLMISFLIKAGER
Trigger: CCTCTCTCCTGCCTTTATGAGGAAACTGATCATCAAAAGTTCCCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR CCA 90 bp AGAGACTTGGGTCTCTTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTaGGGTGGCAGAAGTAGGGAGTGGGAACTTTTGATGATCAGTTTC +
Preference number: 1 (lower is better)
Translates to: RDLGLFSKERSPRRW*GGRSREWELLMISF
Trigger: GAAACTGATCATCAAAAGTTCCCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAAGAGACCCAAGTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR CCA 90 bp TCAAGAGACTTGGGTCTCTTCAGCAAAGAGAGGAGTCCAAGGCGTTaGTGGGGTGGCAGAAGTAGGGAGTGGGAACTTTTGATGATCAGT +
Preference number: 1 (lower is better)
Translates to: SRDLGLFSKERSPRR*WGGRSREWELLMIS
Trigger: ACTGATCATCAAAAGTTCCCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAAGAGACCCAAGTCTCTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR TCA 90 bp AACGTGCCTCTTCCCACTTGTCTTACTGGTAGCTTACAGTCACTCTaGGGTGTCAAGAGACTTGGGTCTCTTCAGCAAAGAGAGGAGTCC +
Preference number: 1 (lower is better)
Translates to: NVPLPTCLTGSLQSL*GVKRLGSLQQREES
Trigger: GGACTCCTCTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTCAGAGTGACTGTAAGCTACCAGTAAGACAAGTGGGAAGAGGCACGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR CCA 90 bp TACATGTTATACTCCTTGCTCAGAATACGGATGAGGTCACCCCGTTaGAAGGACAGTTCATCTGGCTGGTCACCATGGCAATCCCATAGG +
Preference number: 1 (lower is better)
Translates to: YMLYSLLRIRMRSPR*KDSSSGWSPWQSHR
Trigger: CCTATGGGATTGCCATGGTGACCAGCCAGATGAACTGTCCTTCCAACGGGGTGACCTCATCCGTATTCTGAGCAAGGAGTATAACATGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
3UTR CCA 90 bp GTTTCATCTTTCTTCCACTTCAAAGGCAGTGGTGAGATACTCCTTTaGAACAATCCCAACGAGGCTGTTCAGTTCTCCCACCCACCAGCC +
Preference number: 1 (lower is better)
Translates to: VSSFFHFKGSGEILL*NNPNEAVQFSHPPA
Trigger: GGCTGGTGGGTGGGAGAACTGAACAGCCTCGTTGGGATTGTTCCAAAGGAGTATCTCACCACTGCCTTTGAAGTGGAAGAAAGATGAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
3UTR TCA 90 bp GGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGAGCTATaGCTAGGCTGGTTTAGTAACAGGTTTGATGAACGTGCCTCTTCC +
Preference number: 1 (lower is better)
Translates to: GRCGCVDTFRDGDEL*LGWFSNRFDERASS
Trigger: GGAAGAGGCACGTTCATCAAACCTGTTACTAAACCAGCCTAGTCATAGCTCATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR TCA 90 bp ATATATTTCCTGGGTTTCATCTTTCTTCCACTTCAAAGGCAGTGGTaGGATACTCCTTTGGAACAATCCCAACGAGGCTGTTCAGTTCTC +
Preference number: 1 (lower is better)
Translates to: IYFLGFIFLPLQRQW*DTPLEQSQRGCSVL
Trigger: GAGAACTGAACAGCCTCGTTGGGATTGTTCCAAAGGAGTATCTCACCACTGCCTTTGAAGTGGAAGAAAGATGAAACCCAGGAAATATAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584709.5
3UTR TCA 90 bp CAGAGGCATTTTCTTTCCATCAGTGGTGAATCACTAGCATTAGTATaGGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTTTCA +
Preference number: 1 (lower is better)
Translates to: QRHFLSISGESLALV*EMKKSYFTGNSHLS
Trigger: TGAAAGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACTAATGCTAGTGATTCACCACTGATGGAAAGAAAATGCCTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000584924.5
3UTR-3UTR CCA 90 bp TTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGGAGTCCAAGGCGTTGGTaGGGTGGCAGAAGTAGGGAG +
Preference number: 2 (lower is better)
Translates to: FSKERSPRRWWGGRSREWSPRRW*GGRSRE
Trigger: CTCCCTACTTCTGCCACCCCACCAACGCCTTGGACT...CCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR-3UTR TCA 90 bp CGTTGGAAGGACAGTTCATCTGGCTGGTCACCATGGCAATCCCATAGGCCCTGGAGCTTACAGTCACTCTaGGGTGTCAAGAGACTTGGG +
Preference number: 2 (lower is better)
Translates to: RWKDSSSGWSPWQSHRPWSLQSL*GVKRLG
Trigger: CCCAAGTCTCTTGACACCTCAGAGTGACTGTAAGCT...CCAGGGCCTATGGGATTGCCATGGTGACCAGCCAGATGAACTGTCCTTCCAACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584709.5
3UTR-3UTR GCA 90 bp ACTTGGGTCTCTTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAACTGTGCTGTGTAGGTTaGAGACAGGATGGCTGGAGA +
Preference number: 2 (lower is better)
Translates to: TWVSSAKRGVQGVGGVAELCCVG*RQDGWR
Trigger: TCTCCAGCCATCCTGTCTGCAACCTACACAGCACAG...TTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAAGAGACCCAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000583844.5
3UTR-3UTR CCA 90 bp TTTGGAACAATCCCAACGAGGCTGTTCAGTTCTCCCACCCACCAGCCATACATGTCTGGCTGGTCACCATaGCAATCCCATAGGCCCTGG +
Preference number: 2 (lower is better)
Translates to: FGTIPTRLFSSPTHQPYMSGWSP*QSHRPW
Trigger: CCAGGGCCTATGGGATTGCCATGGTGACCAGCCAGA...CATGTATGGCTGGTGGGTGGGAGAACTGAACAGCCTCGTTGGGATTGTTCCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
3UTR-3UTR CCA 90 bp GACTTGGGTCTCTTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGATGCAGACAGGATGGCTaGAGATTGAGCATCTGTCTT +
Preference number: 2 (lower is better)
Translates to: DLGLFSKERSPRRWWGGRCRQDG*RLSICL
Trigger: AAGACAGATGCTCAATCTCCAGCCATCCTGTCTGCA...TCTGCCACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAAGAGACCCAAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000583844.5
3UTR-3UTR CCA 90 bp GACTTGGGTCTCTTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAGGCAGAAGTAGGGAGTaGGAACTTTTGATGATCAGT +
Preference number: 2 (lower is better)
Translates to: DLGLFSKERSPRRWWGGRGRSRE*ELLMIS
Trigger: ACTGATCATCAAAAGTTCCCACTCCCTACTTCTGCC...TCTGCCACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAAGAGACCCAAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR-3UTR CCA 90 bp TTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGGGGCAGAAGTAGGGAGTaGGAACTTTTGATGATCAGT +
Preference number: 2 (lower is better)
Translates to: FSKERSPRRWWGGRSREWGRSRE*ELLMIS
Trigger: ACTGATCATCAAAAGTTCCCACTCCCTACTTCTGCC...CCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR-3UTR CCA 90 bp GTGCTTTTCAAACCAGCCAGAACAACCAGTAATGTCCTCCTCCCAAGGTTTCCTAGGAGTCCAAGGCGTTaGTGGGGTGGCAGAAGTAGG +
Preference number: 2 (lower is better)
Translates to: VLFKPARTTSNVLLPRFPRSPRR*WGGRSR
Trigger: CCTACTTCTGCCACCCCACCAACGCCTTGGACTCCT...AGGAAACCTTGGGAGGAGGACATTACTGGTTGTTCTGGCTGGTTTGAAAAGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR CAA 90 bp CTTGTCTTACTGGTAGCTTACAGTCACTCTGAGGTGTCAAGAGACTaGGGTCTCTTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTGGGGT +
Preference number: 2 (lower is better)
Translates to: LVLLVAYSHSEVSRD*GLFSKERSPRRWWG
Trigger: ACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTCAGAGTGACTGTAAGCTACCAGTAAGACAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR-3UTR TCA 90 bp AACCAGCCAGAACAACCAGTAATGTCCTCCTCCCAAGGTTTCCTTCTCTCTCACAGGATGGCTGGAGATTaGGCATCTGTCTTGGCCTTG +
Preference number: 2 (lower is better)
Translates to: NQPEQPVMSSSQGFLLSHRMAGD*ASVLAL
Trigger: CAAGGCCAAGACAGATGCTCAATCTCCAGCCATCCT...GTGAGAGAGAAGGAAACCTTGGGAGGAGGACATTACTGGTTGTTCTGGCTGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000583844.5
3UTR-3UTR CCA 90 bp GGTGGCAGAAGTAGGGAGTGGGAACTTTTGATGATCAGTTTCCTCATAAAGGCAAGTCCAAGGCGTTGGTaGGGTGGCAGAAGTAGGGAG +
Preference number: 2 (lower is better)
Translates to: GGRSREWELLMISFLIKASPRRW*GGRSRE
Trigger: CTCCCTACTTCTGCCACCCCACCAACGCCTTGGACT...TGCCTTTATGAGGAAACTGATCATCAAAAGTTCCCACTCCCTACTTCTGCCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR-3UTR CCA 90 bp AAGCTTGTGGAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGAGGAGTCCAAGGCGTTaGTGGGGTGGCAGAAGTAGG +
Preference number: 2 (lower is better)
Translates to: KLVEKADVVVWTHLEMGMRSPRR*WGGRSR
Trigger: CCTACTTCTGCCACCCCACCAACGCCTTGGACTCCT...CATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTCCACAAGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR-3UTR CCA 90 bp TCTTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTAGGTGTCAAGAGACTTaGGTCTCTTCAGCAAAGAGA +
Preference number: 2 (lower is better)
Translates to: SSAKRGVQGVGGVAEVGSRCQET*VSSAKR
Trigger: TCTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCT...ACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR-3UTR CCA 90 bp AAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGGGAACTTTCTGGGAACCACAACTTaGGGAGTCAAAACCATCAAT +
Preference number: 2 (lower is better)
Translates to: KRGVQGVGGVAEVGSGNFLGTTT*GVKTIN
Trigger: ATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAG...AAAGTTCCCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000584709.5
3UTR-3UTR CCA 90 bp TTTGGAACAATCCCAACGAGGCTGTTCAGTTCTCCCACCCACCAGCCATACATGGCAGATGTGGTTGTGTaGACACATTTAGAGATGGGG +
Preference number: 2 (lower is better)
Translates to: FGTIPTRLFSSPTHQPYMADVVV*THLEMG
Trigger: CCCCATCTCTAAATGTGTCCACACAACCACATCTGC...CATGTATGGCTGGTGGGTGGGAGAACTGAACAGCCTCGTTGGGATTGTTCCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584709.5
3UTR-3UTR CCA 90 bp TCCTCCTCATCCTCTTCATATGGAATGGTTAAGGAGCTCAGATCCTTTAACAAGGAATCTCTTCGCAGGTaGGGGGCCATCCGTACACCG +
Preference number: 2 (lower is better)
Translates to: SSSSSSYGMVKELRSFNKESLRR*GAIRTP
Trigger: CGGTGTACGGATGGCCCCCCACCTGCGAAGAGATTC...CTTGTTAAAGGATCTGAGCTCCTTAACCATTCCATATGAAGAGGATGAGGAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000581419.1
ENST00000584709.5
3UTR CAA 90 bp AGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGGGAACTTTaGATGATCAGTTTCCTCATAAAGGCAGGAGAGAGGGAAGAATAT +
Preference number: 2 (lower is better)
Translates to: SPRRWWGGRSREWEL*MISFLIKAGEREEY
Trigger: ATATTCTTCCCTCTCTCCTGCCTTTATGAGGAAACTGATCATCAAAAGTTCCCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR-3UTR TCA 90 bp TTTGGAACAATCCCAACGAGGCTGTTCAGTTCTCCCACCCACCAGCCATACATGCTTCAAAGGCAGTGGTaGGATACTCCTTTGGAACAA +
Preference number: 2 (lower is better)
Translates to: FGTIPTRLFSSPTHQPYMLQRQW*DTPLEQ
Trigger: TTGTTCCAAAGGAGTATCTCACCACTGCCTTTGAAG...CATGTATGGCTGGTGGGTGGGAGAACTGAACAGCCTCGTTGGGATTGTTCCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
3UTR-3UTR GCA 90 bp GCTGGTCACCATGGCAATCCCATAGGCCCTGGTAGTAACTGGCATAGTCTACTCTCCTCTTCTAGATCATaGTCTTCATCTGGCAAGACT +
Preference number: 2 (lower is better)
Translates to: AGHHGNPIGPGSNWHSLLSSSRS*SSSGKT
Trigger: AGTCTTGCCAGATGAAGAGCATGATCTAGAAGAGGA...GAGTAGACTATGCCAGTTACTACCAGGGCCTATGGGATTGCCATGGTGACCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000581400.2
3UTR-3UTR CCA 90 bp TTAGTAACAGGTTTGATGAACGTGCCTCTTCCCACTTGTCTTACTGGTAGCTTAAGGAGTCCAAGGCGTTaGTGGGGTGGCAGAAGTAGG +
Preference number: 2 (lower is better)
Translates to: LVTGLMNVPLPTCLTGSLRSPRR*WGGRSR
Trigger: CCTACTTCTGCCACCCCACCAACGCCTTGGACTCCT...TAAGCTACCAGTAAGACAAGTGGGAAGAGGCACGTTCATCAAACCTGTTACTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR-3UTR CCA 90 bp TCCTCCTCATCCTCTTCATATGGAATGGTTAAGGAGCTCAGATCCTTTAACAAGATTAGGCCGGCGCGGTaGCTCAAGCCAGTAATCCCA +
Preference number: 2 (lower is better)
Translates to: SSSSSSYGMVKELRSFNKIRPAR*LKPVIP
Trigger: TGGGATTACTGGCTTGAGCCACCGCGCCGGCCTAAT...CTTGTTAAAGGATCTGAGCTCCTTAACCATTCCATATGAAGAGGATGAGGAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000581419.1
3UTR-3UTR TCA 90 bp GAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGAGCTATGACAGCTTACAGTCACTCTaGGGTGTCAAGAGACTTGGG +
Preference number: 2 (lower is better)
Translates to: EKADVVVWTHLEMGMSYDSLQSL*GVKRLG
Trigger: CCCAAGTCTCTTGACACCTCAGAGTGACTGTAAGCT...GTCATAGCTCATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR-3UTR CCA 90 bp GTCTTACTGGTAGCTTACAGTCACTCTGAGGTGTCAAGAGACTTGGGTCTCTTCGCAGATGTGGTTGTGTaGACACATTTAGAGATGGGG +
Preference number: 2 (lower is better)
Translates to: VLLVAYSHSEVSRDLGLFADVVV*THLEMG
Trigger: CCCCATCTCTAAATGTGTCCACACAACCACATCTGC...GAAGAGACCCAAGTCTCTTGACACCTCAGAGTGACTGTAAGCTACCAGTAAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR-3UTR CCA 90 bp GTGGGTCTGCACTGGGAACCACAACTTGGGGAGTCAAAACCATCAATATCATCAGTCTCTGGCTTCTGCTaGACTAGTAGCTGTAAACTC +
Preference number: 2 (lower is better)
Translates to: VGLHWEPQLGESKPSISSVSGFC*TSSCKL
Trigger: GAGTTTACAGCTACTAGTCCAGCAGAAGCCAGAGAC...TGATGATATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAGTGCAGACCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581419.1
ENST00000584709.5
3UTR-3UTR CCA 90 bp CACTTCAAAGGCAGTGGTGAGATACTCCTTTGGAACAATCCCAACGAGGCTGTTGGTGAGATACTCCTTTaGAACAATCCCAACGAGGCT +
Preference number: 2 (lower is better)
Translates to: HFKGSGEILLWNNPNEAVGEILL*NNPNEA
Trigger: AGCCTCGTTGGGATTGTTCCAAAGGAGTATCTCACC...AACAGCCTCGTTGGGATTGTTCCAAAGGAGTATCTCACCACTGCCTTTGAAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
3UTR-3UTR CCA 90 bp AGTGGTGAGATACTCCTTTGGAACAATCCCAACGAGGCTGTTCAGTTCTCCCACCCTCTTCATATGGAATaGTTAAGGAGCTCAGATCCT +
Preference number: 2 (lower is better)
Translates to: SGEILLWNNPNEAVQFSHPLHME*LRSSDP
Trigger: AGGATCTGAGCTCCTTAACCATTCCATATGAAGAGG...GTGGGAGAACTGAACAGCCTCGTTGGGATTGTTCCAAAGGAGTATCTCACCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
3UTR-3UTR CCA 90 bp AAGATAGTGGGTCTGCACTGGGAACCACAACTTGGGGAGTCAAAACCATCAATAGGTGAGATACTCCTTTaGAACAATCCCAACGAGGCT +
Preference number: 2 (lower is better)
Translates to: KIVGLHWEPQLGESKPSIGEILL*NNPNEA
Trigger: AGCCTCGTTGGGATTGTTCCAAAGGAGTATCTCACC...TATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAGTGCAGACCCACTATCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
3UTR-3UTR GCA 90 bp TCCTTGCTCAGAATACGGATGAGGTCACCCCGTTGGAAGGACAGTTCATCTGGCTTCTCCAAGTATCCTTaGTTGATTACGTTATCAAGT +
Preference number: 2 (lower is better)
Translates to: SLLRIRMRSPRWKDSSSGFSKYP*LITLSS
Trigger: ACTTGATAACGTAATCAAGCAAGGATACTTGGAGAA...GCCAGATGAACTGTCCTTCCAACGGGGTGACCTCATCCGTATTCTGAGCAAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584709.5
3UTR-3UTR CCA 90 bp CAGCCAGAACAACCAGTAATGTCCTCCTCCCAAGGTTTCCTTCTCTCTCACCTTTTTGTGAAAAGCTTGTaGAAAAGGCAGATGTGGTTG +
Preference number: 2 (lower is better)
Translates to: QPEQPVMSSSQGFLLSHLFVKSL*KRQMWL
Trigger: CAACCACATCTGCCTTTTCCACAAGCTTTTCACAAA...AAGGTGAGAGAGAAGGAAACCTTGGGAGGAGGACATTACTGGTTGTTCTGGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR-3UTR CCA 90 bp GAGTGGGAACTTTTGATGATCAGTTTCCTCATAAAGGCAGGAGAGAGGGAAGAAAGCAGGATTCTTTCTTaGAATCTCTTCGCAGGTGGG +
Preference number: 2 (lower is better)
Translates to: EWELLMISFLIKAGEREESRILS*NLFAGG
Trigger: CCCACCTGCGAAGAGATTCCAAGAAAGAATCCTGCT...TTCTTCCCTCTCTCCTGCCTTTATGAGGAAACTGATCATCAAAAGTTCCCACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584709.5
3UTR-3UTR CCA 90 bp GATACTCCTTTGGAACAATCCCAACGAGGCTGTTCAGTTCTCCCACCCACCAGCATCATGCTCTTCATCTaGCAAGACTTCATAAATATC +
Preference number: 2 (lower is better)
Translates to: DTPLEQSQRGCSVLPPTSIMLFI*QDFINI
Trigger: GATATTTATGAAGTCTTGCCAGATGAAGAGCATGAT...GCTGGTGGGTGGGAGAACTGAACAGCCTCGTTGGGATTGTTCCAAAGGAGTATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
3UTR-3UTR TCA 90 bp AGCTGCGCCTATCCTGGGAGGTCAGTTCAAAGCAGGATTCTTTCTTGGAATCTCGATCCAAAGAAACTATaGTCTTTGCTTTTCTTCTCC +
Preference number: 2 (lower is better)
Translates to: SCAYPGRSVQSRILSWNLDPKKL*SLLFFS
Trigger: GGAGAAGAAAAGCAAAGATCATAGTTTCTTTGGATC...GAGATTCCAAGAAAGAATCCTGCTTTGAACTGACCTCCCAGGATAGGCGCAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000581419.1
ENST00000584709.5
3UTR-3UTR CCA 90 bp TTCAAAGGCAGTGGTGAGATACTCCTTTGGAACAATCCCAACGAGGCTGTTCAGTTTGTGAAAAGCTTGTaGAAAAGGCAGATGTGGTTG +
Preference number: 2 (lower is better)
Translates to: FKGSGEILLWNNPNEAVQFVKSL*KRQMWL
Trigger: CAACCACATCTGCCTTTTCCACAAGCTTTTCACAAA...CTGAACAGCCTCGTTGGGATTGTTCCAAAGGAGTATCTCACCACTGCCTTTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000584709.5
3UTR-3UTR CCA 90 bp CTGGGAACCACAACTTGGGGAGTCAAAACCATCAATATCATCATATGTCTCTTCGTCTCTGGCTTCTGCTaGACTAGTAGCTGTAAACTC +
Preference number: 2 (lower is better)
Translates to: LGTTTWGVKTINIIICLFVSGFC*TSSCKL
Trigger: GAGTTTACAGCTACTAGTCCAGCAGAAGCCAGAGAC...GAAGAGACATATGATGATATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581419.1
ENST00000584709.5
3UTR-3UTR TCA 90 bp CTGCGCCTATCCTGGGAGGTCAGTTCAAAGCAGGATTCTTTCTTGGAATCTCTTGATCCAAAGAAACTATaGTCTTTGCTTTTCTTCTCC +
Preference number: 2 (lower is better)
Translates to: LRLSWEVSSKQDSFLESLDPKKL*SLLFFS
Trigger: GGAGAAGAAAAGCAAAGATCATAGTTTCTTTGGATC...AAGAGATTCCAAGAAAGAATCCTGCTTTGAACTGACCTCCCAGGATAGGCGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000581419.1
ENST00000584709.5
3UTR-3UTR GCA 90 bp ACTGGGAACCACAACTTGGGGAGTCAAAACCATCAATATCATCATATGTCTCTTACACACCATCGCTTCTaGCACTCCGATCCAAAGAAA +
Preference number: 2 (lower is better)
Translates to: TGNHNLGSQNHQYHHMSLTHHRF*HSDPKK
Trigger: TTTCTTTGGATCGGAGTGGCAGAAGCGATGGTGTGT...AAGAGACATATGATGATATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581419.1
ENST00000584709.5
3UTR-3UTR CCA 90 bp TGTGAAAAGCTTGTGGAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGCAGAAGTAGGGAGTaGGAACTTTTGATGATCAGT +
Preference number: 2 (lower is better)
Translates to: CEKLVEKADVVVWTHLEMGRSRE*ELLMIS
Trigger: ACTGATCATCAAAAGTTCCCACTCCCTACTTCTGCC...CATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTCCACAAGCTTTTCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR-3UTR CCA 90 bp ACTGGGAACCACAACTTGGGGAGTCAAAACCATCAATATCATCATATGTCTCTTAGCAGGATTCTTTCTTaGAATCTCTTCGCAGGTGGG +
Preference number: 2 (lower is better)
Translates to: TGNHNLGSQNHQYHHMSLSRILS*NLFAGG
Trigger: CCCACCTGCGAAGAGATTCCAAGAAAGAATCCTGCT...AAGAGACATATGATGATATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581419.1
ENST00000584709.5
3UTR-3UTR TCA 90 bp TCCTCCTCATCCTCTTCATATGGAATGGTTAAGGAGCTCAGATCCTTTAACAAGACGTTATCAAGTTCTTaGGCTCCTTTTACGATGTCT +
Preference number: 2 (lower is better)
Translates to: SSSSSSYGMVKELRSFNKTLSSS*APFTMS
Trigger: AGACATCGTAAAAGGAGCTCAAGAACTTGATAACGT...CTTGTTAAAGGATCTGAGCTCCTTAACCATTCCATATGAAGAGGATGAGGAGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000581419.1
ENST00000584709.5
3UTR-3UTR CCA 90 bp AAGCTTGTGGAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGGAAGAATATATTTCCTaGGTTTCATCTTTCTTCCAC +
Preference number: 2 (lower is better)
Translates to: KLVEKADVVVWTHLEMGMEEYIS*VSSFFH
Trigger: GTGGAAGAAAGATGAAACCCAGGAAATATATTCTTC...CATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTCCACAAGCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000584709.5
3UTR-3UTR GCA 90 bp TCCTCTTCATATGGAATGGTTAAGGAGCTCAGATCCTTTAACAAGAAACTTATTCTCCTTTTCGTCGAGTaGCACTCTCATCCTCTTCTA +
Preference number: 2 (lower is better)
Translates to: SSSYGMVKELRSFNKKLILLFVE*HSHPLL
Trigger: TAGAAGAGGATGAGAGTGGCACTCGACGAAAAGGAG...AATAAGTTTCTTGTTAAAGGATCTGAGCTCCTTAACCATTCCATATGAAGAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
3UTR-3UTR CCA 90 bp GAGTGGGAACTTTTGATGATCAGTTTCCTCATAAAGGCAGGAGAGAGGGAAGAAATCATGCTCTTCATCTaGCAAGACTTCATAAATATC +
Preference number: 2 (lower is better)
Translates to: EWELLMISFLIKAGEREEIMLFI*QDFINI
Trigger: GATATTTATGAAGTCTTGCCAGATGAAGAGCATGAT...TTCTTCCCTCTCTCCTGCCTTTATGAGGAAACTGATCATCAAAAGTTCCCACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584709.5
3UTR CAA 90 bp GCTTTTCTTCTCCAAGTATCCTTGCTTGATTACGTTATCAAGTTCTaGAGCTCCTTTTACGATGTCTTCCATTCACTGATGGATAAGTTG +
Preference number: 2 (lower is better)
Translates to: AFLLQVSLLDYVIKF*SSFYDVFHSLMDKL
Trigger: CAACTTATCCATCAGTGAATGGAAGACATCGTAAAAGGAGCTCAAGAACTTGATAACGTAATCAAGCAAGGATACTTGGAGAAGAAAAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000584709.5
3UTR CCA 72 bp GGTCTCTTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTaGGGTGGCAGAAGTAGGGAGTGGGAACTTTTGATG +
Preference number: 3 (lower is better)
Translates to: GLFSKERSPRRW*GGRSREWELLM
Trigger: CATCAAAAGTTCCCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAAGAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR CCA 72 bp TTGGGTCTCTTCAGCAAAGAGAGGAGTCCAAGGCGTTaGTGGGGTGGCAGAAGTAGGGAGTGGGAACTTTTG +
Preference number: 3 (lower is better)
Translates to: LGLFSKERSPRR*WGGRSREWELL
Trigger: CAAAAGTTCCCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAAGAGACCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR-3UTR CAA 90 bp TCTTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGAGGTGTCAAGAGACTaGGGTCTCTTCAGCAAAGAG +
Preference number: 3 (lower is better)
Translates to: SSAKRGVQGVGGVAEVGSEVSRD*GLFSKE
Trigger: CTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTC...ACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR CCA 72 bp GGTCACCATGGCAATCCCATAGGCCCTGGTAGTAACTaGCATAGTCTACTCCTTTTCGTCGAGTGCCACTCT +
Preference number: 3 (lower is better)
Translates to: GHHGNPIGPGSN*HSLLLFVECHS
Trigger: AGAGTGGCACTCGACGAAAAGGAGTAGACTATGCCAGTTACTACCAGGGCCTATGGGATTGCCATGGTGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000581400.2
3UTR CCA 72 bp TACTCCTTGCTCAGAATACGGATGAGGTCACCCCGTTaGAAGGACAGTTCATCTGGCTGGTCACCATGGCAA +
Preference number: 3 (lower is better)
Translates to: YSLLRIRMRSPR*KDSSSGWSPWQ
Trigger: TTGCCATGGTGACCAGCCAGATGAACTGTCCTTCCAACGGGGTGACCTCATCCGTATTCTGAGCAAGGAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
3UTR-3UTR CAA 90 bp AACCAGCCAGAACAACCAGTAATGTCCTCCTCCCAAGGTTTCCTTCTCTCTCACCAGGATGGCTGGAGATaGAGCATCTGTCTTGGCCTT +
Preference number: 3 (lower is better)
Translates to: NQPEQPVMSSSQGFLLSHQDGWR*SICLGL
Trigger: AAGGCCAAGACAGATGCTCAATCTCCAGCCATCCTG...GTGAGAGAGAAGGAAACCTTGGGAGGAGGACATTACTGGTTGTTCTGGCTGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000583844.5
3UTR CCA 72 bp AGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTaGGAACTTTTGATGATCAGTTTCCTCATAAAGGCA +
Preference number: 3 (lower is better)
Translates to: SPRRWWGGRSRE*ELLMISFLIKA
Trigger: TGCCTTTATGAGGAAACTGATCATCAAAAGTTCCCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR TCA 72 bp AGCCATACATGTTATACTCCTTGCTCAGAATACGGATaGGGTCACCCCGTTGGAAGGACAGTTCATCTGGCT +
Preference number: 3 (lower is better)
Translates to: SHTCYTPCSEYG*GHPVGRTVHLA
Trigger: AGCCAGATGAACTGTCCTTCCAACGGGGTGACCTCATCCGTATTCTGAGCAAGGAGTATAACATGTATGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
3UTR CCA 72 bp TTCTTCCACTTCAAAGGCAGTGGTGAGATACTCCTTTaGAACAATCCCAACGAGGCTGTTCAGTTCTCCCAC +
Preference number: 3 (lower is better)
Translates to: FFHFKGSGEILL*NNPNEAVQFSH
Trigger: GTGGGAGAACTGAACAGCCTCGTTGGGATTGTTCCAAAGGAGTATCTCACCACTGCCTTTGAAGTGGAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
3UTR-3UTR CAA 90 bp CAGCCAGAACAACCAGTAATGTCCTCCTCCCAAGGTTTCCTTCTCTCTCACCTTAGGGAGTGGGAACTTTaGATGATCAGTTTCCTCATA +
Preference number: 3 (lower is better)
Translates to: QPEQPVMSSSQGFLLSHLREWEL*MISFLI
Trigger: TATGAGGAAACTGATCATCAAAAGTTCCCACTCCCT...AAGGTGAGAGAGAAGGAAACCTTGGGAGGAGGACATTACTGGTTGTTCTGGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR-3UTR CAA 90 bp GTGGAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGAGCTATGGTTTAGTAACAGGTTaGATGAACGTGCCTCTTCCC +
Preference number: 3 (lower is better)
Translates to: VEKADVVVWTHLEMGMSYGLVTG*MNVPLP
Trigger: GGGAAGAGGCACGTTCATCAAACCTGTTACTAAACC...ATAGCTCATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR-3UTR CAA 90 bp GGTGGCAGAAGTAGGGAGTGGGAACTTTTGATGATCAGTTTCCTCATAAAGGCAACTGGGAACCACAACTaGGGGAGTCAAAACCATCAA +
Preference number: 3 (lower is better)
Translates to: GGRSREWELLMISFLIKATGNHN*GSQNHQ
Trigger: TTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAGT...TGCCTTTATGAGGAAACTGATCATCAAAAGTTCCCACTCCCTACTTCTGCCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000584709.5
3UTR TCA 72 bp CTTCCCACTTGTCTTACTGGTAGCTTACAGTCACTCTaGGGTGTCAAGAGACTTGGGTCTCTTCAGCAAAGA +
Preference number: 3 (lower is better)
Translates to: LPTCLTGSLQSL*GVKRLGSLQQR
Trigger: TCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTCAGAGTGACTGTAAGCTACCAGTAAGACAAGTGGGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR TCA 72 bp CTGGGTTTCATCTTTCTTCCACTTCAAAGGCAGTGGTaGGATACTCCTTTGGAACAATCCCAACGAGGCTGT +
Preference number: 3 (lower is better)
Translates to: LGFIFLPLQRQW*DTPLEQSQRGC
Trigger: ACAGCCTCGTTGGGATTGTTCCAAAGGAGTATCTCACCACTGCCTTTGAAGTGGAAGAAAGATGAAACCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
3UTR-3UTR CAA 90 bp GTCTTACTGGTAGCTTACAGTCACTCTGAGGTGTCAAGAGACTTGGGTCTCTTCTACATGTTATACTCCTaGCTCAGAATACGGATGAGG +
Preference number: 3 (lower is better)
Translates to: VLLVAYSHSEVSRDLGLFYMLYS*LRIRMR
Trigger: CCTCATCCGTATTCTGAGCAAGGAGTATAACATGTA...GAAGAGACCCAAGTCTCTTGACACCTCAGAGTGACTGTAAGCTACCAGTAAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584709.5
3UTR GCA 72 bp GGTAGTAACTGGCATAGTCTACTCCTTTTCGTCGAGTaGCACTCTCATCCTCTTCTAGATCATGCTCTTCAT +
Preference number: 3 (lower is better)
Translates to: GSNWHSLLLFVE*HSHPLLDHALH
Trigger: ATGAAGAGCATGATCTAGAAGAGGATGAGAGTGGCACTCGACGAAAAGGAGTAGACTATGCCAGTTACTACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000581400.2
3UTR-3UTR CAA 90 bp AAGCTTGTGGAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGAGGGAGTGGGAACTTTaGATGATCAGTTTCCTCATA +
Preference number: 3 (lower is better)
Translates to: KLVEKADVVVWTHLEMGMREWEL*MISFLI
Trigger: TATGAGGAAACTGATCATCAAAAGTTCCCACTCCCT...CATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTCCACAAGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR-3UTR CAA 90 bp TTCTTTCTCCTCTGTAGGCTCTTTTATCCCCACACTCCCAGGCAAGATAGTGGGTCCAAGTATCCTTGCTaGATTACGTTATCAAGTTCT +
Preference number: 3 (lower is better)
Translates to: FFLLCRLFYPHTPRQDSGSKYPC*ITLSSS
Trigger: AGAACTTGATAACGTAATCAAGCAAGGATACTTGGA...CCCACTATCTTGCCTGGGAGTGTGGGGATAAAAGAGCCTACAGAGGAGAAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000584709.5
3UTR TCA 72 bp GGTTGTGTGGACACATTTAGAGATGGGGATGAGCTATaGCTAGGCTGGTTTAGTAACAGGTTTGATGAACGT +
Preference number: 3 (lower is better)
Translates to: GCVDTFRDGDEL*LGWFSNRFDER
Trigger: ACGTTCATCAAACCTGTTACTAAACCAGCCTAGTCATAGCTCATCCCCATCTCTAAATGTGTCCACACAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR-3UTR CAA 90 bp TCATCTTTCTTCCACTTCAAAGGCAGTGGTGAGATACTCCTTTGGAACAATCCCAGGGAGTGGGAACTTTaGATGATCAGTTTCCTCATA +
Preference number: 3 (lower is better)
Translates to: SSFFHFKGSGEILLWNNPREWEL*MISFLI
Trigger: TATGAGGAAACTGATCATCAAAAGTTCCCACTCCCT...GGGATTGTTCCAAAGGAGTATCTCACCACTGCCTTTGAAGTGGAAGAAAGATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584709.5
3UTR-3UTR CAA 90 bp GAGTGGGAACTTTTGATGATCAGTTTCCTCATAAAGGCAGGAGAGAGGGAAGAATTCTTTGTGAAAAGCTaGTGGAAAAGGCAGATGTGG +
Preference number: 3 (lower is better)
Translates to: EWELLMISFLIKAGEREEFFVKS*WKRQMW
Trigger: CCACATCTGCCTTTTCCACAAGCTTTTCACAAAGAA...TTCTTCCCTCTCTCCTGCCTTTATGAGGAAACTGATCATCAAAAGTTCCCACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
3UTR-3UTR CAA 90 bp GTCTGCACTGGGAACCACAACTTGGGGAGTCAAAACCATCAATATCATCATATGTCCAAGTATCCTTGCTaGATTACGTTATCAAGTTCT +
Preference number: 3 (lower is better)
Translates to: VCTGNHNLGSQNHQYHHMSKYPC*ITLSSS
Trigger: AGAACTTGATAACGTAATCAAGCAAGGATACTTGGA...CATATGATGATATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAGTGCAGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581419.1
ENST00000584709.5
3UTR-3UTR CAA 90 bp AGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTTTCAGAGAACTATTAGGCAGTTCATaGGCCATGGTTCTGATACCT +
Preference number: 3 (lower is better)
Translates to: SMRNEEKLLHWQLSSFRELLGSS*AMVLIP
Trigger: AGGTATCAGAACCATGGCCAATGAACTGCCTAATAG...TTCTCTGAAAGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584924.5
3UTR TCA 72 bp TCCAAGTATCCTTGCTTGATTACGTTATCAAGTTCTTaGGCTCCTTTTACGATGTCTTCCATTCCCCAAGTT +
Preference number: 3 (lower is better)
Translates to: SKYPCLITLSSS*APFTMSSIPQV
Trigger: AACTTGGGGAATGGAAGACATCGTAAAAGGAGCTCAAGAACTTGATAACGTAATCAAGCAAGGATACTTGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000581419.1
3UTR TCA 72 bp TTTCTTTCCATCAGTGGTGAATCACTAGCATTAGTATaGGAAATGAAGAAAAGCTACTTCACTGGCAACTCT +
Preference number: 3 (lower is better)
Translates to: FLSISGESLALV*EMKKSYFTGNS
Trigger: AGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACTAATGCTAGTGATTCACCACTGATGGAAAGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CCA 90 bp AAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGGGAACTTTGGGAGGCGGACGGGCTaGAAGGCGACCCGGCTGCAC +
Preference number: 4 (lower is better)
Translates to: KRGVQGVGGVAEVGSGNFGRRTG*KATRLH
Trigger: GTGCAGCCGGGTCGCCTTCCAGCCCGTCCGCCTCCC...AAAGTTCCCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CCA 90 bp AGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGGGAACTTTTGATGATCGGGAGGCGGACGGGCTaGAAGGCGACCCGGCTGCAC +
Preference number: 4 (lower is better)
Translates to: SPRRWWGGRSREWELLMIGRRTG*KATRLH
Trigger: GTGCAGCCGGGTCGCCTTCCAGCCCGTCCGCCTCCC...GATCATCAAAAGTTCCCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CCA 90 bp CGTTGGAAGGACAGTTCATCTGGCTGGTCACCATGGCAATCCCATAGGCCCTGGCGGCCTGCATTTGGCTaGGCGGGAGAGAGGCGGGAC +
Preference number: 4 (lower is better)
Translates to: RWKDSSSGWSPWQSHRPWRPAFG*AGERRD
Trigger: GTCCCGCCTCTCTCCCGCCCAGCCAAATGCAGGCCG...CCAGGGCCTATGGGATTGCCATGGTGACCAGCCAGATGAACTGTCCTTCCAACG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS-3UTR CCA 90 bp TCTTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGCGGCGGCCTGCATTTaGCTGGGCGGGAGAGAGGCG +
Preference number: 4 (lower is better)
Translates to: SSAKRGVQGVGGVAEVGSAAACI*LGGREA
Trigger: CGCCTCTCTCCCGCCCAGCCAAATGCAGGCCGCCGC...ACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR GCA 90 bp ACAGTTCATCTGGCTGGTCACCATGGCAATCCCATAGGCCCTGGTAGTAACTGGGGAAGGCGACCCGGCTaGACCGCGAGGCACCTGTAC +
Preference number: 4 (lower is better)
Translates to: TVHLAGHHGNPIGPGSNWGRRPG*TARHLY
Trigger: GTACAGGTGCCTCGCGGTGCAGCCGGGTCGCCTTCC...CCAGTTACTACCAGGGCCTATGGGATTGCCATGGTGACCAGCCAGATGAACTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS-3UTR GCA 90 bp AAAGGCAGTGGTGAGATACTCCTTTGGAACAATCCCAACGAGGCTGTTCAGTTCGGGAGGGCGGCGGCCTaGATTTGGCTGGGCGGGAGA +
Preference number: 4 (lower is better)
Translates to: KGSGEILLWNNPNEAVQFGRAAA*IWLGGR
Trigger: TCTCCCGCCCAGCCAAATGCAGGCCGCCGCCCTCCC...GAACTGAACAGCCTCGTTGGGATTGTTCCAAAGGAGTATCTCACCACTGCCTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS-3UTR CCA 90 bp TGGCCCACAAGTTCCACTCAACTATTAGGCAGTTCATTGGCCATGGTTCTGATAGGGAGGCGGACGGGCTaGAAGGCGACCCGGCTGCAC +
Preference number: 4 (lower is better)
Translates to: WPTSSTQLLGSSLAMVLIGRRTG*KATRLH
Trigger: GTGCAGCCGGGTCGCCTTCCAGCCCGTCCGCCTCCC...TATCAGAACCATGGCCAATGAACTGCCTAATAGTTGAGTGGAACTTGTGGGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CCA 90 bp TCTGCTGACAACACACCATCGCTTCTGCCACTCCGATCCAAAGAAACTATGATCGCGGCGGCCTGCATTTaGCTGGGCGGGAGAGAGGCG +
Preference number: 4 (lower is better)
Translates to: SADNTPSLLPLRSKETMIAAACI*LGGREA
Trigger: CGCCTCTCTCCCGCCCAGCCAAATGCAGGCCGCCGC...GATCATAGTTTCTTTGGATCGGAGTGGCAGAAGCGATGGTGTGTTGTCAGCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS-3UTR CCA 90 bp GAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGGGAACTTTTGAGTCCAAGGCGTTGGTaGGGTGGCAGAAGTAGGGAG +
Preference number: 4 (lower is better)
Translates to: ERSPRRWWGGRSREWELLSPRRW*GGRSRE
Trigger: CTCCCTACTTCTGCCACCCCACCAACGCCTTGGACT...CAAAAGTTCCCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR TCA 90 bp GACTTGGGTCTCTTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGACCCTTGCAACAGCGCTaGGGTTCTCATTCCGCAAAC +
Preference number: 4 (lower is better)
Translates to: DLGLFSKERSPRRWWGGRPLQQR*GSHSAN
Trigger: GTTTGCGGAATGAGAACCTCAGCGCTGTTGCAAGGG...TCTGCCACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAAGAGACCCAAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR TCA 90 bp TGTCAAGAGACTTGGGTCTCTTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTGGGAGGGTGCATCGGATGTaGGGGACAGGCCAAGAGTCC +
Preference number: 4 (lower is better)
Translates to: CQETWVSSAKRGVQGVGGRVHRM*GTGQES
Trigger: GGACTCTTGGCCTGTCCCTCACATCCGATGCACCCT...CCCACCAACGCCTTGGACTCCTCTCTTTGCTGAAGAGACCCAAGTCTCTTGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR TCA 90 bp GAGGTGTCAAGAGACTTGGGTCTCTTCAGCAAAGAGAGGAGTCCAAGGCGTTGGAGGGTGCATCGGATGTaGGGGACAGGCCAAGAGTCC +
Preference number: 4 (lower is better)
Translates to: EVSRDLGLFSKERSPRRWRVHRM*GTGQES
Trigger: GGACTCTTGGCCTGTCCCTCACATCCGATGCACCCT...CCAACGCCTTGGACTCCTCTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR GCA 90 bp AAGCTTGTGGAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGGGGAGGGCGGCGGCCTaGATTTGGCTGGGCGGGAGA +
Preference number: 4 (lower is better)
Translates to: KLVEKADVVVWTHLEMGMGRAAA*IWLGGR
Trigger: TCTCCCGCCCAGCCAAATGCAGGCCGCCGCCCTCCC...CATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTCCACAAGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR TCA 90 bp AAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGGGAACTTTTGCTCAGAATACGGATaGGGTCACCCCGTTGGAAGG +
Preference number: 4 (lower is better)
Translates to: KRGVQGVGGVAEVGSGNFCSEYG*GHPVGR
Trigger: CCTTCCAACGGGGTGACCTCATCCGTATTCTGAGCA...AAAGTTCCCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR GCA 90 bp AGAAACAAAGTAGTGGCCCACAAGTTCCACTCAACTATTAGGCAGTTCATTGGCGGGAGGGCGGCGGCCTaGATTTGGCTGGGCGGGAGA +
Preference number: 4 (lower is better)
Translates to: RNKVVAHKFHSTIRQFIGGRAAA*IWLGGR
Trigger: TCTCCCGCCCAGCCAAATGCAGGCCGCCGCCCTCCC...GCCAATGAACTGCCTAATAGTTGAGTGGAACTTGTGGGCCACTACTTTGTTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CCA 90 bp AGAAACAAAGTAGTGGCCCACAAGTTCCACTCAACTATTAGGCAGTTCATTGGCGCGGCGGCCTGCATTTaGCTGGGCGGGAGAGAGGCG +
Preference number: 4 (lower is better)
Translates to: RNKVVAHKFHSTIRQFIGAAACI*LGGREA
Trigger: CGCCTCTCTCCCGCCCAGCCAAATGCAGGCCGCCGC...GCCAATGAACTGCCTAATAGTTGAGTGGAACTTGTGGGCCACTACTTTGTTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR TCA 90 bp TTTCTCCTCTGTAGGCTCTTTTATCCCCACACTCCCAGGCAAGATAGTGGGTCTAGGGTGCATCGGATGTaGGGGACAGGCCAAGAGTCC +
Preference number: 4 (lower is better)
Translates to: FLLCRLFYPHTPRQDSGSRVHRM*GTGQES
Trigger: GGACTCTTGGCCTGTCCCTCACATCCGATGCACCCT...AGACCCACTATCTTGCCTGGGAGTGTGGGGATAAAAGAGCCTACAGAGGAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR CCA 90 bp TGGGTCTCTTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAATAGTGGGTCTGCACTaGGAACCACAACTTGGGGAG +
Preference number: 4 (lower is better)
Translates to: WVSSAKRGVQGVGGVAEVIVGLH*EPQLGE
Trigger: CTCCCCAAGTTGTGGTTCCCAGTGCAGACCCACTAT...TACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAAGAGACCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CCA 90 bp GAAGAGACCTCTGCTGACAACACACCATCGCTTCTGCCACTCCGATCCAAAGAAAGGAGTCCAAGGCGTTaGTGGGGTGGCAGAAGTAGG +
Preference number: 4 (lower is better)
Translates to: EETSADNTPSLLPLRSKERSPRR*WGGRSR
Trigger: CCTACTTCTGCCACCCCACCAACGCCTTGGACTCCT...TTCTTTGGATCGGAGTGGCAGAAGCGATGGTGTGTTGTCAGCAGAGGTCTCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS-3UTR TCA 90 bp ACTTGGGTCTCTTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAAGAAGAGACCTCTGCTaGCAACACACCATCGCTTCT +
Preference number: 4 (lower is better)
Translates to: TWVSSAKRGVQGVGGVAERRDLC*QHTIAS
Trigger: AGAAGCGATGGTGTGTTGTCAGCAGAGGTCTCTTCT...TTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAAGAGACCCAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CCA 90 bp TTAGTAACAGGTTTGATGAACGTGCCTCTTCCCACTTGTCTTACTGGTAGCTTACGGCCTGCATTTGGCTaGGCGGGAGAGAGGCGGGAC +
Preference number: 4 (lower is better)
Translates to: LVTGLMNVPLPTCLTGSLRPAFG*AGERRD
Trigger: GTCCCGCCTCTCTCCCGCCCAGCCAAATGCAGGCCG...TAAGCTACCAGTAAGACAAGTGGGAAGAGGCACGTTCATCAAACCTGTTACTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CCA 90 bp TACAGTCACTCTGAGGTGTCAAGAGACTTGGGTCTCTTCAGCAAAGAGAGGAGTGAATCTCTTCGCAGGTaGGGGGCCATCCGTACACCG +
Preference number: 4 (lower is better)
Translates to: YSHSEVSRDLGLFSKERSESLRR*GAIRTP
Trigger: CGGTGTACGGATGGCCCCCCACCTGCGAAGAGATTC...ACTCCTCTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTCAGAGTGACTGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CCA 90 bp GTGCTTTTCAAACCAGCCAGAACAACCAGTAATGTCCTCCTCCCAAGGTTTCCTGAATCTCTTCGCAGGTaGGGGGCCATCCGTACACCG +
Preference number: 4 (lower is better)
Translates to: VLFKPARTTSNVLLPRFPESLRR*GAIRTP
Trigger: CGGTGTACGGATGGCCCCCCACCTGCGAAGAGATTC...AGGAAACCTTGGGAGGAGGACATTACTGGTTGTTCTGGCTGGTTTGAAAAGCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CCA 90 bp CTCCCAGGCAAGATAGTGGGTCTGCACTGGGAACCACAACTTGGGGAGTCAAAAATAGTGGGTCTGCACTaGGAACCACAACTTGGGGAG +
Preference number: 4 (lower is better)
Translates to: LPGKIVGLHWEPQLGESKIVGLH*EPQLGE
Trigger: CTCCCCAAGTTGTGGTTCCCAGTGCAGACCCACTAT...TTTTGACTCCCCAAGTTGTGGTTCCCAGTGCAGACCCACTATCTTGCCTGGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000581400.2
ENST00000581419.1
ENST00000584709.5
CDS-3UTR CCA 90 bp GCTTACAGTCACTCTGAGGTGTCAAGAGACTTGGGTCTCTTCAGCAAAGAGAGGTCTGGCTGGTCACCATaGCAATCCCATAGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: AYSHSEVSRDLGLFSKERSGWSP*QSHRPW
Trigger: CCAGGGCCTATGGGATTGCCATGGTGACCAGCCAGA...CCTCTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTCAGAGTGACTGTAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CCA 90 bp AGCTGCGCCTATCCTGGGAGGTCAGTTCAAAGCAGGATTCTTTCTTGGAATCTCAGTCCAAGGCGTTGGTaGGGTGGCAGAAGTAGGGAG +
Preference number: 4 (lower is better)
Translates to: SCAYPGRSVQSRILSWNLSPRRW*GGRSRE
Trigger: CTCCCTACTTCTGCCACCCCACCAACGCCTTGGACT...GAGATTCCAAGAAAGAATCCTGCTTTGAACTGACCTCCCAGGATAGGCGCAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584709.5
3UTR CAA 72 bp ATACTCCTTGCTCAGAATACGGATGAGGTCACCCCGTaGGAAGGACAGTTCATCTGGCTGGTCACCATGGCA +
Preference number: 4 (lower is better)
Translates to: ILLAQNTDEVTP*EGQFIWLVTMA
Trigger: TGCCATGGTGACCAGCCAGATGAACTGTCCTTCCAACGGGGTGACCTCATCCGTATTCTGAGCAAGGAGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
3UTR CAA 72 bp CTGTGCTGTGTAGGTTGCAGACAGGATGGCTGGAGATaGAGCATCTGTCTTGGCCTTGAGGTAACCTGGGTT +
Preference number: 4 (lower is better)
Translates to: LCCVGCRQDGWR*SICLGLEVTWV
Trigger: AACCCAGGTTACCTCAAGGCCAAGACAGATGCTCAATCTCCAGCCATCCTGTCTGCAACCTACACAGCACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000583844.5
CDS-3UTR TCA 90 bp AGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGGGAACTTTTGATGATCAGAATATGGTCTCTGTaGTCCCTTGCAACAGCGCTG +
Preference number: 4 (lower is better)
Translates to: SPRRWWGGRSREWELLMIRIWSL*SLATAL
Trigger: CAGCGCTGTTGCAAGGGATCACAGAGACCATATTCT...GATCATCAAAAGTTCCCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR TCA 90 bp TGGCCCACAAGTTCCACTCAACTATTAGGCAGTTCATTGGCCATGGTTCTGATAAGGGTGCATCGGATGTaGGGGACAGGCCAAGAGTCC +
Preference number: 4 (lower is better)
Translates to: WPTSSTQLLGSSLAMVLIRVHRM*GTGQES
Trigger: GGACTCTTGGCCTGTCCCTCACATCCGATGCACCCT...TATCAGAACCATGGCCAATGAACTGCCTAATAGTTGAGTGGAACTTGTGGGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR TCA 90 bp CGGATGAGGTCACCCCGTTGGAAGGACAGTTCATCTGGCTGGTCACCATGGCAACTCATCCTGATAATCTaGCAAAAAGGGTGCATCGGA +
Preference number: 4 (lower is better)
Translates to: RMRSPRWKDSSSGWSPWQLILII*QKGCIG
Trigger: TCCGATGCACCCTTTTTGTCAGATTATCAGGATGAG...TTGCCATGGTGACCAGCCAGATGAACTGTCCTTCCAACGGGGTGACCTCATCCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR TCA 90 bp CAGCCATACATGTTATACTCCTTGCTCAGAATACGGATGAGGTCACCCCGTTGGTGCTCAGAATACGGATaGGGTCACCCCGTTGGAAGG +
Preference number: 4 (lower is better)
Translates to: QPYMLYSLLRIRMRSPRWCSEYG*GHPVGR
Trigger: CCTTCCAACGGGGTGACCTCATCCGTATTCTGAGCA...CCAACGGGGTGACCTCATCCGTATTCTGAGCAAGGAGTATAACATGTATGGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR TCA 90 bp GAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGGGAACTTTTGCTTCAAAGGCAGTGGTaGGATACTCCTTTGGAACAA +
Preference number: 4 (lower is better)
Translates to: ERSPRRWWGGRSREWELLLQRQW*DTPLEQ
Trigger: TTGTTCCAAAGGAGTATCTCACCACTGCCTTTGAAG...CAAAAGTTCCCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR GCA 90 bp GGCTCTTTTATCCCCACACTCCCAGGCAAGATAGTGGGTCTGCACTGGGAACCAACACACCATCGCTTCTaGCACTCCGATCCAAAGAAA +
Preference number: 4 (lower is better)
Translates to: GSFIPTLPGKIVGLHWEPTHHRF*HSDPKK
Trigger: TTTCTTTGGATCGGAGTGGCAGAAGCGATGGTGTGT...TGGTTCCCAGTGCAGACCCACTATCTTGCCTGGGAGTGTGGGGATAAAAGAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR CCA 90 bp TCTTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTAGCAGGATTCTTTCTTaGAATCTCTTCGCAGGTGGG +
Preference number: 4 (lower is better)
Translates to: SSAKRGVQGVGGVAEVGSSRILS*NLFAGG
Trigger: CCCACCTGCGAAGAGATTCCAAGAAAGAATCCTGCT...ACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CCA 90 bp TTCAAACCAGCCAGAACAACCAGTAATGTCCTCCTCCCAAGGTTTCCTTCTCTCAGGAGTCCAAGGCGTTaGTGGGGTGGCAGAAGTAGG +
Preference number: 4 (lower is better)
Translates to: FKPARTTSNVLLPRFPSLRSPRR*WGGRSR
Trigger: CCTACTTCTGCCACCCCACCAACGCCTTGGACTCCT...GAGAGAAGGAAACCTTGGGAGGAGGACATTACTGGTTGTTCTGGCTGGTTTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR CCA 90 bp CAAGAGACTTGGGTCTCTTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTGGGGTGTGCAGACAGGATGGCTaGAGATTGAGCATCTGTCTT +
Preference number: 4 (lower is better)
Translates to: QETWVSSAKRGVQGVGGVCRQDG*RLSICL
Trigger: AAGACAGATGCTCAATCTCCAGCCATCCTGTCTGCA...CACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAAGAGACCCAAGTCTCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000583844.5
CDS-3UTR TCA 90 bp GGCTCTTTTATCCCCACACTCCCAGGCAAGATAGTGGGTCTGCACTGGGAACCAAATAGTACCTGGCTTTaGTTTGCTGAAAGCCCCGTA +
Preference number: 4 (lower is better)
Translates to: GSFIPTLPGKIVGLHWEPNSTWL*FAESPV
Trigger: TACGGGGCTTTCAGCAAATCAAAGCCAGGTACTATT...TGGTTCCCAGTGCAGACCCACTATCTTGCCTGGGAGTGTGGGGATAAAAGAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS-3UTR TCA 90 bp AGCTGCGCCTATCCTGGGAGGTCAGTTCAAAGCAGGATTCTTTCTTGGAATCTCCCAAGAGTCCCGCTGTaGTTATCATCAGAGCTGTCC +
Preference number: 4 (lower is better)
Translates to: SCAYPGRSVQSRILSWNLPRVPL*LSSELS
Trigger: GGACAGCTCTGATGATAATCACAGCGGGACTCTTGG...GAGATTCCAAGAAAGAATCCTGCTTTGAACTGACCTCCCAGGATAGGCGCAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS-3UTR TCA 90 bp CCATACATGTTATACTCCTTGCTCAGAATACGGATGAGGTCACCCCGTTGGAAGTGCTCAGAATACGGATaGGGTCACCCCGTTGGAAGG +
Preference number: 4 (lower is better)
Translates to: PYMLYSLLRIRMRSPRWKCSEYG*GHPVGR
Trigger: CCTTCCAACGGGGTGACCTCATCCGTATTCTGAGCA...CTTCCAACGGGGTGACCTCATCCGTATTCTGAGCAAGGAGTATAACATGTATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR TCA 90 bp TGTCAAGAGACTTGGGTCTCTTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTGGGGATGGGGATGAGCTATaGCTAGGCTGGTTTAGTAAC +
Preference number: 4 (lower is better)
Translates to: CQETWVSSAKRGVQGVGGDGDEL*LGWFSN
Trigger: GTTACTAAACCAGCCTAGTCATAGCTCATCCCCATC...CCCACCAACGCCTTGGACTCCTCTCTTTGCTGAAGAGACCCAAGTCTCTTGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR TCA 90 bp AGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGGGAACTTTTGATGATCGATGGGGATGAGCTATaGCTAGGCTGGTTTAGTAAC +
Preference number: 4 (lower is better)
Translates to: SPRRWWGGRSREWELLMIDGDEL*LGWFSN
Trigger: GTTACTAAACCAGCCTAGTCATAGCTCATCCCCATC...GATCATCAAAAGTTCCCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR TCA 90 bp CAGCCAGAACAACCAGTAATGTCCTCCTCCCAAGGTTTCCTTCTCTCTCACCTTAGGATGGCTGGAGATTaGGCATCTGTCTTGGCCTTG +
Preference number: 4 (lower is better)
Translates to: QPEQPVMSSSQGFLLSHLRMAGD*ASVLAL
Trigger: CAAGGCCAAGACAGATGCTCAATCTCCAGCCATCCT...AAGGTGAGAGAGAAGGAAACCTTGGGAGGAGGACATTACTGGTTGTTCTGGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000583844.5
CDS-3UTR CCA 90 bp CAGCCATACATGTTATACTCCTTGCTCAGAATACGGATGAGGTCACCCCGTTGGATAGTGGGTCTGCACTaGGAACCACAACTTGGGGAG +
Preference number: 4 (lower is better)
Translates to: QPYMLYSLLRIRMRSPRWIVGLH*EPQLGE
Trigger: CTCCCCAAGTTGTGGTTCCCAGTGCAGACCCACTAT...CCAACGGGGTGACCTCATCCGTATTCTGAGCAAGGAGTATAACATGTATGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR CCA 90 bp TTCTTCTTTCTCCTCTGTAGGCTCTTTTATCCCCACACTCCCAGGCAAGATAGTTCTGGCTGGTCACCATaGCAATCCCATAGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: FFFLLCRLFYPHTPRQDSSGWSP*QSHRPW
Trigger: CCAGGGCCTATGGGATTGCCATGGTGACCAGCCAGA...ACTATCTTGCCTGGGAGTGTGGGGATAAAAGAGCCTACAGAGGAGAAAGAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR CCA 90 bp GCTGGTCACCATGGCAATCCCATAGGCCCTGGTAGTAACTGGCATAGTCTACTCGGTGAGATACTCCTTTaGAACAATCCCAACGAGGCT +
Preference number: 4 (lower is better)
Translates to: AGHHGNPIGPGSNWHSLLGEILL*NNPNEA
Trigger: AGCCTCGTTGGGATTGTTCCAAAGGAGTATCTCACC...GAGTAGACTATGCCAGTTACTACCAGGGCCTATGGGATTGCCATGGTGACCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000581400.2
CDS-3UTR CCA 90 bp TTTCCTTCTCCTTTTATCTTTCCTGCTGTGCTGTGTAGGTTGCAGACAGGATGGAGTCCAAGGCGTTGGTaGGGTGGCAGAAGTAGGGAG +
Preference number: 4 (lower is better)
Translates to: FPSPFIFPAVLCRLQTGWSPRRW*GGRSRE
Trigger: CTCCCTACTTCTGCCACCCCACCAACGCCTTGGACT...CCATCCTGTCTGCAACCTACACAGCACAGCAGGAAAGATAAAAGGAGAAGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000583844.5
CDS-3UTR CCA 90 bp GCTGACAACACACCATCGCTTCTGCCACTCCGATCCAAAGAAACTATGATCTTTATTAGGCCGGCGCGGTaGCTCAAGCCAGTAATCCCA +
Preference number: 4 (lower is better)
Translates to: ADNTPSLLPLRSKETMIFIRPAR*LKPVIP
Trigger: TGGGATTACTGGCTTGAGCCACCGCGCCGGCCTAAT...AAAGATCATAGTTTCTTTGGATCGGAGTGGCAGAAGCGATGGTGTGTTGTCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000581419.1
3UTR CAA 72 bp CTGGTAGCTTACAGTCACTCTGAGGTGTCAAGAGACTaGGGTCTCTTCAGCAAAGAGAGGAGTCCAAGGCGT +
Preference number: 4 (lower is better)
Translates to: LVAYSHSEVSRD*GLFSKERSPRR
Trigger: ACGCCTTGGACTCCTCTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTCAGAGTGACTGTAAGCTACCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR TCA 90 bp GAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGAGCTATGACCCCTTGCAACAGCGCTaGGGTTCTCATTCCGCAAAC +
Preference number: 4 (lower is better)
Translates to: EKADVVVWTHLEMGMSYDPLQQR*GSHSAN
Trigger: GTTTGCGGAATGAGAACCTCAGCGCTGTTGCAAGGG...GTCATAGCTCATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR TCA 90 bp GCTTACAGTCACTCTGAGGTGTCAAGAGACTTGGGTCTCTTCAGCAAAGAGAGGAGAATATGGTCTCTGTaGTCCCTTGCAACAGCGCTG +
Preference number: 4 (lower is better)
Translates to: AYSHSEVSRDLGLFSKERRIWSL*SLATAL
Trigger: CAGCGCTGTTGCAAGGGATCACAGAGACCATATTCT...CCTCTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTCAGAGTGACTGTAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR TCA 90 bp GTAGCTTACAGTCACTCTGAGGTGTCAAGAGACTTGGGTCTCTTCAGCAAAGAGCCAAGAGTCCCGCTGTaGTTATCATCAGAGCTGTCC +
Preference number: 4 (lower is better)
Translates to: VAYSHSEVSRDLGLFSKEPRVPL*LSSELS
Trigger: GGACAGCTCTGATGATAATCACAGCGGGACTCTTGG...CTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTCAGAGTGACTGTAAGCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR TCA 90 bp CTGGGAACCACAACTTGGGGAGTCAAAACCATCAATATCATCATATGTCTCTTCAGGGTGCATCGGATGTaGGGGACAGGCCAAGAGTCC +
Preference number: 4 (lower is better)
Translates to: LGTTTWGVKTINIIICLFRVHRM*GTGQES
Trigger: GGACTCTTGGCCTGTCCCTCACATCCGATGCACCCT...GAAGAGACATATGATGATATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000581400.2
ENST00000581419.1
ENST00000584709.5
CDS-3UTR TCA 90 bp CTCCCAGGCAAGATAGTGGGTCTGCACTGGGAACCACAACTTGGGGAGTCAAAACTCATCCTGATAATCTaGCAAAAAGGGTGCATCGGA +
Preference number: 4 (lower is better)
Translates to: LPGKIVGLHWEPQLGESKLILII*QKGCIG
Trigger: TCCGATGCACCCTTTTTGTCAGATTATCAGGATGAG...TTTTGACTCCCCAAGTTGTGGTTCCCAGTGCAGACCCACTATCTTGCCTGGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000581400.2
ENST00000581419.1
ENST00000584709.5
CDS-3UTR TCA 90 bp GAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGGGAACTTTTGACGTTATCAAGTTCTTaGGCTCCTTTTACGATGTCT +
Preference number: 4 (lower is better)
Translates to: ERSPRRWWGGRSREWELLTLSSS*APFTMS
Trigger: AGACATCGTAAAAGGAGCTCAAGAACTTGATAACGT...CAAAAGTTCCCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR GCA 90 bp ACAGTTCATCTGGCTGGTCACCATGGCAATCCCATAGGCCCTGGTAGTAACTGGATTCCGCAAACCTTCTaGCAGAAACTCTTCAGCATC +
Preference number: 4 (lower is better)
Translates to: TVHLAGHHGNPIGPGSNWIPQTF*QKLFSI
Trigger: GATGCTGAAGAGTTTCTGGCAGAAGGTTTGCGGAAT...CCAGTTACTACCAGGGCCTATGGGATTGCCATGGTGACCAGCCAGATGAACTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS-3UTR GCA 90 bp TACAGTCACTCTGAGGTGTCAAGAGACTTGGGTCTCTTCAGCAAAGAGAGGAGTGTCTCTGTGATCCCTTaGAACAGCGCTGAGGTTCTC +
Preference number: 4 (lower is better)
Translates to: YSHSEVSRDLGLFSKERSVSVIP*NSAEVL
Trigger: GAGAACCTCAGCGCTGTTGCAAGGGATCACAGAGAC...ACTCCTCTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTCAGAGTGACTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR GCA 90 bp AAAGGCAGTGGTGAGATACTCCTTTGGAACAATCCCAACGAGGCTGTTCAGTTCGTCTCTGTGATCCCTTaGAACAGCGCTGAGGTTCTC +
Preference number: 4 (lower is better)
Translates to: KGSGEILLWNNPNEAVQFVSVIP*NSAEVL
Trigger: GAGAACCTCAGCGCTGTTGCAAGGGATCACAGAGAC...GAACTGAACAGCCTCGTTGGGATTGTTCCAAAGGAGTATCTCACCACTGCCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS-3UTR GCA 90 bp GATGAGGTCACCCCGTTGGAAGGACAGTTCATCTGGCTGGTCACCATGGCAATCTCCTCTTCTAGATCATaGTCTTCATCTGGCAAGACT +
Preference number: 4 (lower is better)
Translates to: DEVTPLEGQFIWLVTMAISSSRS*SSSGKT
Trigger: AGTCTTGCCAGATGAAGAGCATGATCTAGAAGAGGA...GATTGCCATGGTGACCAGCCAGATGAACTGTCCTTCCAACGGGGTGACCTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR GCA 90 bp AGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTTTCAGAGAAGGAAGGCGACCCGGCTaGACCGCGAGGCACCTGTAC +
Preference number: 4 (lower is better)
Translates to: SMRNEEKLLHWQLSSFREGRRPG*TARHLY
Trigger: GTACAGGTGCCTCGCGGTGCAGCCGGGTCGCCTTCC...TTCTCTGAAAGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CCA 90 bp ACTCCCAGGCAAGATAGTGGGTCTGCACTGGGAACCACAACTTGGGGAGTCAAACTGGGAACCACAACTTaGGGAGTCAAAACCATCAAT +
Preference number: 4 (lower is better)
Translates to: TPRQDSGSALGTTTWGVKLGTTT*GVKTIN
Trigger: ATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAG...TTTGACTCCCCAAGTTGTGGTTCCCAGTGCAGACCCACTATCTTGCCTGGGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000581400.2
ENST00000581419.1
ENST00000584709.5
CDS-3UTR CCA 90 bp CTCCCAGGCAAGATAGTGGGTCTGCACTGGGAACCACAACTTGGGGAGTCAAAACTGGGAACCACAACTTaGGGAGTCAAAACCATCAAT +
Preference number: 4 (lower is better)
Translates to: LPGKIVGLHWEPQLGESKLGTTT*GVKTIN
Trigger: ATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAG...TTTTGACTCCCCAAGTTGTGGTTCCCAGTGCAGACCCACTATCTTGCCTGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000581400.2
ENST00000581419.1
ENST00000584709.5
CDS-3UTR CCA 90 bp TACAGTCACTCTGAGGTGTCAAGAGACTTGGGTCTCTTCAGCAAAGAGAGGAGTATGAGGTCACCCCGTTaGAAGGACAGTTCATCTGGC +
Preference number: 4 (lower is better)
Translates to: YSHSEVSRDLGLFSKERSMRSPR*KDSSSG
Trigger: GCCAGATGAACTGTCCTTCCAACGGGGTGACCTCAT...ACTCCTCTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTCAGAGTGACTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CCA 90 bp TTCAAACCAGCCAGAACAACCAGTAATGTCCTCCTCCCAAGGTTTCCTTCTCTCATGAGGTCACCCCGTTaGAAGGACAGTTCATCTGGC +
Preference number: 4 (lower is better)
Translates to: FKPARTTSNVLLPRFPSLMRSPR*KDSSSG
Trigger: GCCAGATGAACTGTCCTTCCAACGGGGTGACCTCAT...GAGAGAAGGAAACCTTGGGAGGAGGACATTACTGGTTGTTCTGGCTGGTTTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CCA 90 bp TTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGGTTTGTGAAAAGCTTGTaGAAAAGGCAGATGTGGTTG +
Preference number: 4 (lower is better)
Translates to: FSKERSPRRWWGGRSREWFVKSL*KRQMWL
Trigger: CAACCACATCTGCCTTTTCCACAAGCTTTTCACAAA...CCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR TCA 90 bp TTCTTCTTTCTCCTCTGTAGGCTCTTTTATCCCCACACTCCCAGGCAAGATAGTCCAAGAGTCCCGCTGTaGTTATCATCAGAGCTGTCC +
Preference number: 4 (lower is better)
Translates to: FFFLLCRLFYPHTPRQDSPRVPL*LSSELS
Trigger: GGACAGCTCTGATGATAATCACAGCGGGACTCTTGG...ACTATCTTGCCTGGGAGTGTGGGGATAAAAGAGCCTACAGAGGAGAAAGAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR TCA 90 bp TGGCCCACAAGTTCCACTCAACTATTAGGCAGTTCATTGGCCATGGTTCTGATACCAAGAGTCCCGCTGTaGTTATCATCAGAGCTGTCC +
Preference number: 4 (lower is better)
Translates to: WPTSSTQLLGSSLAMVLIPRVPL*LSSELS
Trigger: GGACAGCTCTGATGATAATCACAGCGGGACTCTTGG...TATCAGAACCATGGCCAATGAACTGCCTAATAGTTGAGTGGAACTTGTGGGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR TCA 90 bp CCATACATGTTATACTCCTTGCTCAGAATACGGATGAGGTCACCCCGTTGGAAGAGAAGAGACCTCTGCTaGCAACACACCATCGCTTCT +
Preference number: 4 (lower is better)
Translates to: PYMLYSLLRIRMRSPRWKRRDLC*QHTIAS
Trigger: AGAAGCGATGGTGTGTTGTCAGCAGAGGTCTCTTCT...CTTCCAACGGGGTGACCTCATCCGTATTCTGAGCAAGGAGTATAACATGTATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR TCA 90 bp TTCAAACCAGCCAGAACAACCAGTAATGTCCTCCTCCCAAGGTTTCCTTCTCTCAGCTTACAGTCACTCTaGGGTGTCAAGAGACTTGGG +
Preference number: 4 (lower is better)
Translates to: FKPARTTSNVLLPRFPSLSLQSL*GVKRLG
Trigger: CCCAAGTCTCTTGACACCTCAGAGTGACTGTAAGCT...GAGAGAAGGAAACCTTGGGAGGAGGACATTACTGGTTGTTCTGGCTGGTTTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR TCA 90 bp GTAGCTTACAGTCACTCTGAGGTGTCAAGAGACTTGGGTCTCTTCAGCAAAGAGAGCTTACAGTCACTCTaGGGTGTCAAGAGACTTGGG +
Preference number: 4 (lower is better)
Translates to: VAYSHSEVSRDLGLFSKESLQSL*GVKRLG
Trigger: CCCAAGTCTCTTGACACCTCAGAGTGACTGTAAGCT...CTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTCAGAGTGACTGTAAGCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR TCA 90 bp CTTGTGGAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGAGCAGCTTACAGTCACTCTaGGGTGTCAAGAGACTTGGG +
Preference number: 4 (lower is better)
Translates to: LVEKADVVVWTHLEMGMSSLQSL*GVKRLG
Trigger: CCCAAGTCTCTTGACACCTCAGAGTGACTGTAAGCT...GCTCATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTCCACAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR TCA 90 bp CTTGTGGAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGAGCCATCTGTCTTGGCCTTaGGGTAACCTGGGTTTCATC +
Preference number: 4 (lower is better)
Translates to: LVEKADVVVWTHLEMGMSHLSWP*GNLGFI
Trigger: GATGAAACCCAGGTTACCTCAAGGCCAAGACAGATG...GCTCATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTCCACAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000583844.5
CDS-3UTR GCA 90 bp AACCAGCCAGAACAACCAGTAATGTCCTCCTCCCAAGGTTTCCTTCTCTCTCACCCAGTCTCTGGCTTCTaGTGGACTAGTAGCTGTAAA +
Preference number: 4 (lower is better)
Translates to: NQPEQPVMSSSQGFLLSHPVSGF*WTSSCK
Trigger: TTTACAGCTACTAGTCCAGCAGAAGCCAGAGACTGG...GTGAGAGAGAAGGAAACCTTGGGAGGAGGACATTACTGGTTGTTCTGGCTGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR GCA 90 bp GTGGAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGAGCTATCTGTGCTGTGTAGGTTaGAGACAGGATGGCTGGAGA +
Preference number: 4 (lower is better)
Translates to: VEKADVVVWTHLEMGMSYLCCVG*RQDGWR
Trigger: TCTCCAGCCATCCTGTCTGCAACCTACACAGCACAG...ATAGCTCATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000583844.5
CDS-3UTR CCA 90 bp AACCAGCCAGAACAACCAGTAATGTCCTCCTCCCAAGGTTTCCTTCTCTCTCACGGCCCTGGTAGTAACTaGCATAGTCTACTCCTTTTC +
Preference number: 4 (lower is better)
Translates to: NQPEQPVMSSSQGFLLSHGPGSN*HSLLLF
Trigger: GAAAAGGAGTAGACTATGCCAGTTACTACCAGGGCC...GTGAGAGAGAAGGAAACCTTGGGAGGAGGACATTACTGGTTGTTCTGGCTGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000336915.11
CDS-3UTR CCA 90 bp AACCAGCCAGAACAACCAGTAATGTCCTCCTCCCAAGGTTTCCTTCTCTCTCACGGTGAGATACTCCTTTaGAACAATCCCAACGAGGCT +
Preference number: 4 (lower is better)
Translates to: NQPEQPVMSSSQGFLLSHGEILL*NNPNEA
Trigger: AGCCTCGTTGGGATTGTTCCAAAGGAGTATCTCACC...GTGAGAGAGAAGGAAACCTTGGGAGGAGGACATTACTGGTTGTTCTGGCTGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR CCA 90 bp TGGCAAGGAACCACATCCCAAGTTTATTTGTGCTTTTCAAACCAGCCAGAACAAAGGAGTCCAAGGCGTTaGTGGGGTGGCAGAAGTAGG +
Preference number: 4 (lower is better)
Translates to: WQGTTSQVYLCFSNQPEQRSPRR*WGGRSR
Trigger: CCTACTTCTGCCACCCCACCAACGCCTTGGACTCCT...TTGTTCTGGCTGGTTTGAAAAGCACAAATAAACTTGGGATGTGGTTCCTTGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000336915.11
CDS-3UTR TCA 90 bp GTCTTACTGGTAGCTTACAGTCACTCTGAGGTGTCAAGAGACTTGGGTCTCTTCCTGGCTTTGATTTGCTaGAAGCCCCGTAGAATATGG +
Preference number: 4 (lower is better)
Translates to: VLLVAYSHSEVSRDLGLFLALIC*KPRRIW
Trigger: CCATATTCTACGGGGCTTTCAGCAAATCAAAGCCAG...GAAGAGACCCAAGTCTCTTGACACCTCAGAGTGACTGTAAGCTACCAGTAAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR TCA 90 bp TACATGTTATACTCCTTGCTCAGAATACGGATGAGGTCACCCCGTTGGAAGGACCTGGCTTTGATTTGCTaGAAGCCCCGTAGAATATGG +
Preference number: 4 (lower is better)
Translates to: YMLYSLLRIRMRSPRWKDLALIC*KPRRIW
Trigger: CCATATTCTACGGGGCTTTCAGCAAATCAAAGCCAG...GTCCTTCCAACGGGGTGACCTCATCCGTATTCTGAGCAAGGAGTATAACATGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS-3UTR TCA 90 bp CAGCCAGAACAACCAGTAATGTCCTCCTCCCAAGGTTTCCTTCTCTCTCACCTTAATAGTACCTGGCTTTaGTTTGCTGAAAGCCCCGTA +
Preference number: 4 (lower is better)
Translates to: QPEQPVMSSSQGFLLSHLNSTWL*FAESPV
Trigger: TACGGGGCTTTCAGCAAATCAAAGCCAGGTACTATT...AAGGTGAGAGAGAAGGAAACCTTGGGAGGAGGACATTACTGGTTGTTCTGGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR TCA 90 bp CTCAGAATACGGATGAGGTCACCCCGTTGGAAGGACAGTTCATCTGGCTGGTCAACGTTATCAAGTTCTTaGGCTCCTTTTACGATGTCT +
Preference number: 4 (lower is better)
Translates to: LRIRMRSPRWKDSSSGWSTLSSS*APFTMS
Trigger: AGACATCGTAAAAGGAGCTCAAGAACTTGATAACGT...TGACCAGCCAGATGAACTGTCCTTCCAACGGGGTGACCTCATCCGTATTCTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR TCA 90 bp AAGATAGTGGGTCTGCACTGGGAACCACAACTTGGGGAGTCAAAACCATCAATAAGAAGAGACCTCTGCTaGCAACACACCATCGCTTCT +
Preference number: 4 (lower is better)
Translates to: KIVGLHWEPQLGESKPSIRRDLC*QHTIAS
Trigger: AGAAGCGATGGTGTGTTGTCAGCAGAGGTCTCTTCT...TATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAGTGCAGACCCACTATCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000581400.2
ENST00000581419.1
ENST00000584709.5
CDS-3UTR TCA 90 bp TTTCTCCTCTGTAGGCTCTTTTATCCCCACACTCCCAGGCAAGATAGTGGGTCTCTTCAAAGGCAGTGGTaGGATACTCCTTTGGAACAA +
Preference number: 4 (lower is better)
Translates to: FLLCRLFYPHTPRQDSGSLQRQW*DTPLEQ
Trigger: TTGTTCCAAAGGAGTATCTCACCACTGCCTTTGAAG...AGACCCACTATCTTGCCTGGGAGTGTGGGGATAAAAGAGCCTACAGAGGAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR GCA 90 bp CAAGATAGTGGGTCTGCACTGGGAACCACAACTTGGGGAGTCAAAACCATCAATCCAGTCTCTGGCTTCTaGTGGACTAGTAGCTGTAAA +
Preference number: 4 (lower is better)
Translates to: QDSGSALGTTTWGVKTINPVSGF*WTSSCK
Trigger: TTTACAGCTACTAGTCCAGCAGAAGCCAGAGACTGG...ATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAGTGCAGACCCACTATCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000581400.2
ENST00000581419.1
ENST00000584709.5
CDS-3UTR GCA 90 bp CACTTCAAAGGCAGTGGTGAGATACTCCTTTGGAACAATCCCAACGAGGCTGTTCTCCTTTTCGTCGAGTaGCACTCTCATCCTCTTCTA +
Preference number: 4 (lower is better)
Translates to: HFKGSGEILLWNNPNEAVLLFVE*HSHPLL
Trigger: TAGAAGAGGATGAGAGTGGCACTCGACGAAAAGGAG...AACAGCCTCGTTGGGATTGTTCCAAAGGAGTATCTCACCACTGCCTTTGAAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR CCA 90 bp CCTATCCTGGGAGGTCAGTTCAAAGCAGGATTCTTTCTTGGAATCTCTTCGCAGAGCAGGATTCTTTCTTaGAATCTCTTCGCAGGTGGG +
Preference number: 4 (lower is better)
Translates to: PILGGQFKAGFFLGISSQSRILS*NLFAGG
Trigger: CCCACCTGCGAAGAGATTCCAAGAAAGAATCCTGCT...CTGCGAAGAGATTCCAAGAAAGAATCCTGCTTTGAACTGACCTCCCAGGATAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000581419.1
ENST00000584709.5
CDS-3UTR CCA 90 bp TGGACTAGTAGCTGTAAACTCATAGCTGCGCCTATCCTGGGAGGTCAGTTCAAAAGCAGGATTCTTTCTTaGAATCTCTTCGCAGGTGGG +
Preference number: 4 (lower is better)
Translates to: WTSSCKLIAAPILGGQFKSRILS*NLFAGG
Trigger: CCCACCTGCGAAGAGATTCCAAGAAAGAATCCTGCT...TTTGAACTGACCTCCCAGGATAGGCGCAGCTATGAGTTTACAGCTACTAGTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000581419.1
ENST00000584709.5
CDS-3UTR CCA 90 bp CGGATGAGGTCACCCCGTTGGAAGGACAGTTCATCTGGCTGGTCACCATGGCAAATCATGCTCTTCATCTaGCAAGACTTCATAAATATC +
Preference number: 4 (lower is better)
Translates to: RMRSPRWKDSSSGWSPWQIMLFI*QDFINI
Trigger: GATATTTATGAAGTCTTGCCAGATGAAGAGCATGAT...TTGCCATGGTGACCAGCCAGATGAACTGTCCTTCCAACGGGGTGACCTCATCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR CCA 90 bp ACTGGGAACCACAACTTGGGGAGTCAAAACCATCAATATCATCATATGTCTCTTTCTGGCTGGTCACCATaGCAATCCCATAGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: TGNHNLGSQNHQYHHMSLSGWSP*QSHRPW
Trigger: CCAGGGCCTATGGGATTGCCATGGTGACCAGCCAGA...AAGAGACATATGATGATATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR CCA 90 bp TACAGTCACTCTGAGGTGTCAAGAGACTTGGGTCTCTTCAGCAAAGAGAGGAGTGGTGAGATACTCCTTTaGAACAATCCCAACGAGGCT +
Preference number: 4 (lower is better)
Translates to: YSHSEVSRDLGLFSKERSGEILL*NNPNEA
Trigger: AGCCTCGTTGGGATTGTTCCAAAGGAGTATCTCACC...ACTCCTCTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTCAGAGTGACTGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR CCA 90 bp GTAGCTTACAGTCACTCTGAGGTGTCAAGAGACTTGGGTCTCTTCAGCAAAGAGGGTGAGATACTCCTTTaGAACAATCCCAACGAGGCT +
Preference number: 4 (lower is better)
Translates to: VAYSHSEVSRDLGLFSKEGEILL*NNPNEA
Trigger: AGCCTCGTTGGGATTGTTCCAAAGGAGTATCTCACC...CTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTCAGAGTGACTGTAAGCTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR CCA 90 bp CGGATGAGGTCACCCCGTTGGAAGGACAGTTCATCTGGCTGGTCACCATGGCAAGAAGAATATATTTCCTaGGTTTCATCTTTCTTCCAC +
Preference number: 4 (lower is better)
Translates to: RMRSPRWKDSSSGWSPWQEEYIS*VSSFFH
Trigger: GTGGAAGAAAGATGAAACCCAGGAAATATATTCTTC...TTGCCATGGTGACCAGCCAGATGAACTGTCCTTCCAACGGGGTGACCTCATCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS-3UTR CCA 90 bp CAGCCAGAACAACCAGTAATGTCCTCCTCCCAAGGTTTCCTTCTCTCTCACCTTAGGTGTCAAGAGACTTaGGTCTCTTCAGCAAAGAGA +
Preference number: 4 (lower is better)
Translates to: QPEQPVMSSSQGFLLSHLRCQET*VSSAKR
Trigger: TCTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCT...AAGGTGAGAGAGAAGGAAACCTTGGGAGGAGGACATTACTGGTTGTTCTGGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR CCA 90 bp GAGGTGTCAAGAGACTTGGGTCTCTTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTTTGTGAAAAGCTTGTaGAAAAGGCAGATGTGGTTG +
Preference number: 4 (lower is better)
Translates to: EVSRDLGLFSKERSPRRWFVKSL*KRQMWL
Trigger: CAACCACATCTGCCTTTTCCACAAGCTTTTCACAAA...CCAACGCCTTGGACTCCTCTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR CCA 90 bp TTTTCAAACCAGCCAGAACAACCAGTAATGTCCTCCTCCCAAGGTTTCCTTCTCAGGTTGCAGACAGGATaGCTGGAGATTGAGCATCTG +
Preference number: 4 (lower is better)
Translates to: FSNQPEQPVMSSSQGFLLRLQTG*LEIEHL
Trigger: CAGATGCTCAATCTCCAGCCATCCTGTCTGCAACCT...GAGAAGGAAACCTTGGGAGGAGGACATTACTGGTTGTTCTGGCTGGTTTGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000583844.5
CDS-3UTR TCA 90 bp CTTACAGTCACTCTGAGGTGTCAAGAGACTTGGGTCTCTTCAGCAAAGAGAGGACTCATCCTGATAATCTaGCAAAAAGGGTGCATCGGA +
Preference number: 4 (lower is better)
Translates to: LTVTLRCQETWVSSAKRGLILII*QKGCIG
Trigger: TCCGATGCACCCTTTTTGTCAGATTATCAGGATGAG...TCCTCTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTCAGAGTGACTGTAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR TCA 90 bp CCATACATGTTATACTCCTTGCTCAGAATACGGATGAGGTCACCCCGTTGGAAGCTCATCCTGATAATCTaGCAAAAAGGGTGCATCGGA +
Preference number: 4 (lower is better)
Translates to: PYMLYSLLRIRMRSPRWKLILII*QKGCIG
Trigger: TCCGATGCACCCTTTTTGTCAGATTATCAGGATGAG...CTTCCAACGGGGTGACCTCATCCGTATTCTGAGCAAGGAGTATAACATGTATGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR TCA 90 bp GCACTGGGAACCACAACTTGGGGAGTCAAAACCATCAATATCATCATATGTCTCAGAAGAGACCTCTGCTaGCAACACACCATCGCTTCT +
Preference number: 4 (lower is better)
Translates to: ALGTTTWGVKTINIIICLRRDLC*QHTIAS
Trigger: AGAAGCGATGGTGTGTTGTCAGCAGAGGTCTCTTCT...GAGACATATGATGATATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000581400.2
ENST00000581419.1
ENST00000584709.5
CDS-3UTR TCA 90 bp AGAAACAAAGTAGTGGCCCACAAGTTCCACTCAACTATTAGGCAGTTCATTGGCAGAAGAGACCTCTGCTaGCAACACACCATCGCTTCT +
Preference number: 4 (lower is better)
Translates to: RNKVVAHKFHSTIRQFIGRRDLC*QHTIAS
Trigger: AGAAGCGATGGTGTGTTGTCAGCAGAGGTCTCTTCT...GCCAATGAACTGCCTAATAGTTGAGTGGAACTTGTGGGCCACTACTTTGTTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR TCA 90 bp CCATACATGTTATACTCCTTGCTCAGAATACGGATGAGGTCACCCCGTTGGAAGCTTCAAAGGCAGTGGTaGGATACTCCTTTGGAACAA +
Preference number: 4 (lower is better)
Translates to: PYMLYSLLRIRMRSPRWKLQRQW*DTPLEQ
Trigger: TTGTTCCAAAGGAGTATCTCACCACTGCCTTTGAAG...CTTCCAACGGGGTGACCTCATCCGTATTCTGAGCAAGGAGTATAACATGTATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR GCA 90 bp GTGGAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGAGCTATACACACCATCGCTTCTaGCACTCCGATCCAAAGAAA +
Preference number: 4 (lower is better)
Translates to: VEKADVVVWTHLEMGMSYTHHRF*HSDPKK
Trigger: TTTCTTTGGATCGGAGTGGCAGAAGCGATGGTGTGT...ATAGCTCATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR GCA 90 bp TGGCCCACAAGTTCCACTCAACTATTAGGCAGTTCATTGGCCATGGTTCTGATACCAGTCTCTGGCTTCTaGTGGACTAGTAGCTGTAAA +
Preference number: 4 (lower is better)
Translates to: WPTSSTQLLGSSLAMVLIPVSGF*WTSSCK
Trigger: TTTACAGCTACTAGTCCAGCAGAAGCCAGAGACTGG...TATCAGAACCATGGCCAATGAACTGCCTAATAGTTGAGTGGAACTTGTGGGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR GCA 90 bp TTTTCAAACCAGCCAGAACAACCAGTAATGTCCTCCTCCCAAGGTTTCCTTCTCCTCCTTTTCGTCGAGTaGCACTCTCATCCTCTTCTA +
Preference number: 4 (lower is better)
Translates to: FSNQPEQPVMSSSQGFLLLLFVE*HSHPLL
Trigger: TAGAAGAGGATGAGAGTGGCACTCGACGAAAAGGAG...GAGAAGGAAACCTTGGGAGGAGGACATTACTGGTTGTTCTGGCTGGTTTGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR GCA 90 bp GTGGAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGAGCTATCTCCTTTTCGTCGAGTaGCACTCTCATCCTCTTCTA +
Preference number: 4 (lower is better)
Translates to: VEKADVVVWTHLEMGMSYLLFVE*HSHPLL
Trigger: TAGAAGAGGATGAGAGTGGCACTCGACGAAAAGGAG...ATAGCTCATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CCA 90 bp TCATCCTCTTCATATGGAATGGTTAAGGAGCTCAGATCCTTTAACAAGAAACTTGAATCTCTTCGCAGGTaGGGGGCCATCCGTACACCG +
Preference number: 4 (lower is better)
Translates to: SSSSYGMVKELRSFNKKLESLRR*GAIRTP
Trigger: CGGTGTACGGATGGCCCCCCACCTGCGAAGAGATTC...AAGTTTCTTGTTAAAGGATCTGAGCTCCTTAACCATTCCATATGAAGAGGATGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000581419.1
ENST00000584709.5
CDS-3UTR CCA 90 bp AGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTTTCAGAGAAGAATCTCTTCGCAGGTaGGGGGCCATCCGTACACCG +
Preference number: 4 (lower is better)
Translates to: SMRNEEKLLHWQLSSFREESLRR*GAIRTP
Trigger: CGGTGTACGGATGGCCCCCCACCTGCGAAGAGATTC...TTCTCTGAAAGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CCA 90 bp TGGCCCACAAGTTCCACTCAACTATTAGGCAGTTCATTGGCCATGGTTCTGATAAGCAGGATTCTTTCTTaGAATCTCTTCGCAGGTGGG +
Preference number: 4 (lower is better)
Translates to: WPTSSTQLLGSSLAMVLISRILS*NLFAGG
Trigger: CCCACCTGCGAAGAGATTCCAAGAAAGAATCCTGCT...TATCAGAACCATGGCCAATGAACTGCCTAATAGTTGAGTGGAACTTGTGGGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CCA 90 bp GAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGAGCTATGACGTCTCTGGCTTCTGCTaGACTAGTAGCTGTAAACTC +
Preference number: 4 (lower is better)
Translates to: EKADVVVWTHLEMGMSYDVSGFC*TSSCKL
Trigger: GAGTTTACAGCTACTAGTCCAGCAGAAGCCAGAGAC...GTCATAGCTCATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CCA 90 bp TGGCCCACAAGTTCCACTCAACTATTAGGCAGTTCATTGGCCATGGTTCTGATAGTCTCTGGCTTCTGCTaGACTAGTAGCTGTAAACTC +
Preference number: 4 (lower is better)
Translates to: WPTSSTQLLGSSLAMVLIVSGFC*TSSCKL
Trigger: GAGTTTACAGCTACTAGTCCAGCAGAAGCCAGAGAC...TATCAGAACCATGGCCAATGAACTGCCTAATAGTTGAGTGGAACTTGTGGGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CCA 90 bp CTTGTGGAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGAGCCTGGGAACCACAACTTaGGGAGTCAAAACCATCAAT +
Preference number: 4 (lower is better)
Translates to: LVEKADVVVWTHLEMGMSLGTTT*GVKTIN
Trigger: ATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAG...GCTCATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTCCACAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CCA 90 bp TGGACTAGTAGCTGTAAACTCATAGCTGCGCCTATCCTGGGAGGTCAGTTCAAACTGGGAACCACAACTTaGGGAGTCAAAACCATCAAT +
Preference number: 4 (lower is better)
Translates to: WTSSCKLIAAPILGGQFKLGTTT*GVKTIN
Trigger: ATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAG...TTTGAACTGACCTCCCAGGATAGGCGCAGCTATGAGTTTACAGCTACTAGTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000581419.1
ENST00000584709.5
CDS-3UTR CCA 90 bp CTGGGAACCACAACTTGGGGAGTCAAAACCATCAATATCATCATATGTCTCTTCATAGTGGGTCTGCACTaGGAACCACAACTTGGGGAG +
Preference number: 4 (lower is better)
Translates to: LGTTTWGVKTINIIICLFIVGLH*EPQLGE
Trigger: CTCCCCAAGTTGTGGTTCCCAGTGCAGACCCACTAT...GAAGAGACATATGATGATATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000581400.2
ENST00000581419.1
ENST00000584709.5
CDS-3UTR CCA 90 bp TGGCCCACAAGTTCCACTCAACTATTAGGCAGTTCATTGGCCATGGTTCTGATAGGCCCTGGTAGTAACTaGCATAGTCTACTCCTTTTC +
Preference number: 4 (lower is better)
Translates to: WPTSSTQLLGSSLAMVLIGPGSN*HSLLLF
Trigger: GAAAAGGAGTAGACTATGCCAGTTACTACCAGGGCC...TATCAGAACCATGGCCAATGAACTGCCTAATAGTTGAGTGGAACTTGTGGGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CCA 90 bp CTGGGAACCACAACTTGGGGAGTCAAAACCATCAATATCATCATATGTCTCTTCATGAGGTCACCCCGTTaGAAGGACAGTTCATCTGGC +
Preference number: 4 (lower is better)
Translates to: LGTTTWGVKTINIIICLFMRSPR*KDSSSG
Trigger: GCCAGATGAACTGTCCTTCCAACGGGGTGACCTCAT...GAAGAGACATATGATGATATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR CCA 90 bp TTTCCTTCTCCTTTTATCTTTCCTGCTGTGCTGTGTAGGTTGCAGACAGGATGGGGCCTTGAGGTAACCTaGGTTTCATCTTTCTTCCAC +
Preference number: 4 (lower is better)
Translates to: FPSPFIFPAVLCRLQTGWGLEVT*VSSFFH
Trigger: GTGGAAGAAAGATGAAACCCAGGTTACCTCAAGGCC...CCATCCTGTCTGCAACCTACACAGCACAGCAGGAAAGATAAAAGGAGAAGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000583844.5
CDS-3UTR TCA 90 bp AAGCTTGTGGAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGCTTCAAAGGCAGTGGTaGGATACTCCTTTGGAACAA +
Preference number: 4 (lower is better)
Translates to: KLVEKADVVVWTHLEMGMLQRQW*DTPLEQ
Trigger: TTGTTCCAAAGGAGTATCTCACCACTGCCTTTGAAG...CATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTCCACAAGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR TCA 90 bp TGGCCCACAAGTTCCACTCAACTATTAGGCAGTTCATTGGCCATGGTTCTGATACTTCAAAGGCAGTGGTaGGATACTCCTTTGGAACAA +
Preference number: 4 (lower is better)
Translates to: WPTSSTQLLGSSLAMVLILQRQW*DTPLEQ
Trigger: TTGTTCCAAAGGAGTATCTCACCACTGCCTTTGAAG...TATCAGAACCATGGCCAATGAACTGCCTAATAGTTGAGTGGAACTTGTGGGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR GCA 90 bp GGTGGCAGAAGTAGGGAGTGGGAACTTTTGATGATCAGTTTCCTCATAAAGGCAATTCCGCAAACCTTCTaGCAGAAACTCTTCAGCATC +
Preference number: 4 (lower is better)
Translates to: GGRSREWELLMISFLIKAIPQTF*QKLFSI
Trigger: GATGCTGAAGAGTTTCTGGCAGAAGGTTTGCGGAAT...TGCCTTTATGAGGAAACTGATCATCAAAAGTTCCCACTCCCTACTTCTGCCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR GCA 90 bp AGAAACAAAGTAGTGGCCCACAAGTTCCACTCAACTATTAGGCAGTTCATTGGCCTCCTTTTCGTCGAGTaGCACTCTCATCCTCTTCTA +
Preference number: 4 (lower is better)
Translates to: RNKVVAHKFHSTIRQFIGLLFVE*HSHPLL
Trigger: TAGAAGAGGATGAGAGTGGCACTCGACGAAAAGGAG...GCCAATGAACTGCCTAATAGTTGAGTGGAACTTGTGGGCCACTACTTTGTTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CCA 90 bp TCATCTTTCTTCCACTTCAAAGGCAGTGGTGAGATACTCCTTTGGAACAATCCCGTCTCTGGCTTCTGCTaGACTAGTAGCTGTAAACTC +
Preference number: 4 (lower is better)
Translates to: SSFFHFKGSGEILLWNNPVSGFC*TSSCKL
Trigger: GAGTTTACAGCTACTAGTCCAGCAGAAGCCAGAGAC...GGGATTGTTCCAAAGGAGTATCTCACCACTGCCTTTGAAGTGGAAGAAAGATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS-3UTR CCA 90 bp TTCAAACCAGCCAGAACAACCAGTAATGTCCTCCTCCCAAGGTTTCCTTCTCTCCCTCTTCATATGGAATaGTTAAGGAGCTCAGATCCT +
Preference number: 4 (lower is better)
Translates to: FKPARTTSNVLLPRFPSLPLHME*LRSSDP
Trigger: AGGATCTGAGCTCCTTAACCATTCCATATGAAGAGG...GAGAGAAGGAAACCTTGGGAGGAGGACATTACTGGTTGTTCTGGCTGGTTTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CCA 90 bp TCTTCTTTCTCCTCTGTAGGCTCTTTTATCCCCACACTCCCAGGCAAGATAGTGCCTCTTCATATGGAATaGTTAAGGAGCTCAGATCCT +
Preference number: 4 (lower is better)
Translates to: SSFSSVGSFIPTLPGKIVPLHME*LRSSDP
Trigger: AGGATCTGAGCTCCTTAACCATTCCATATGAAGAGG...CACTATCTTGCCTGGGAGTGTGGGGATAAAAGAGCCTACAGAGGAGAAAGAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR CCA 90 bp AGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTTTCAGAGAATCTGGCTGGTCACCATaGCAATCCCATAGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: SMRNEEKLLHWQLSSFRESGWSP*QSHRPW
Trigger: CCAGGGCCTATGGGATTGCCATGGTGACCAGCCAGA...TTCTCTGAAAGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CCA 90 bp GAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGAGCTATGACGGCAGAAGTAGGGAGTaGGAACTTTTGATGATCAGT +
Preference number: 4 (lower is better)
Translates to: EKADVVVWTHLEMGMSYDGRSRE*ELLMIS
Trigger: ACTGATCATCAAAAGTTCCCACTCCCTACTTCTGCC...GTCATAGCTCATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR CCA 90 bp GTGGAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGAGCTATAGGTGTCAAGAGACTTaGGTCTCTTCAGCAAAGAGA +
Preference number: 4 (lower is better)
Translates to: VEKADVVVWTHLEMGMSYRCQET*VSSAKR
Trigger: TCTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCT...ATAGCTCATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR CCA 90 bp AAGATAGTGGGTCTGCACTGGGAACCACAACTTGGGGAGTCAAAACCATCAATAGTCTCTGGCTTCTGCTaGACTAGTAGCTGTAAATCT +
Preference number: 4 (lower is better)
Translates to: KIVGLHWEPQLGESKPSIVSGFC*TSSCKS
Trigger: AGATTTACAGCTACTAGTCCAGCAGAAGCCAGAGAC...TATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAGTGCAGACCCACTATCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000581400.2
CDS-3UTR TCA 90 bp AGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTTTCAGAGAACCCTTGCAACAGCGCTaGGGTTCTCATTCCGCAAAC +
Preference number: 4 (lower is better)
Translates to: SMRNEEKLLHWQLSSFREPLQQR*GSHSAN
Trigger: GTTTGCGGAATGAGAACCTCAGCGCTGTTGCAAGGG...TTCTCTGAAAGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR TCA 90 bp TGGACTAGTAGCTGTAAACTCATAGCTGCGCCTATCCTGGGAGGTCAGTTCAAAACGTTATCAAGTTCTTaGGCTCCTTTTACGATGTCT +
Preference number: 4 (lower is better)
Translates to: WTSSCKLIAAPILGGQFKTLSSS*APFTMS
Trigger: AGACATCGTAAAAGGAGCTCAAGAACTTGATAACGT...TTTGAACTGACCTCCCAGGATAGGCGCAGCTATGAGTTTACAGCTACTAGTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581419.1
ENST00000584709.5
CDS-3UTR TCA 90 bp AGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTTTCAGAGAATGCTCAGAATACGGATaGGGTCACCCCGTTGGAAGG +
Preference number: 4 (lower is better)
Translates to: SMRNEEKLLHWQLSSFRECSEYG*GHPVGR
Trigger: CCTTCCAACGGGGTGACCTCATCCGTATTCTGAGCA...TTCTCTGAAAGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR TCA 90 bp GTGGGAACTTTTGATGATCAGTTTCCTCATAAAGGCAGGAGAGAGGGAAGAATAGATGGGGATGAGCTATaGCTAGGCTGGTTTAGTAAC +
Preference number: 4 (lower is better)
Translates to: VGTFDDQFPHKGRREGRIDGDEL*LGWFSN
Trigger: GTTACTAAACCAGCCTAGTCATAGCTCATCCCCATC...TATTCTTCCCTCTCTCCTGCCTTTATGAGGAAACTGATCATCAAAAGTTCCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR GCA 90 bp CTGGGAACCACAACTTGGGGAGTCAAAACCATCAATATCATCATATGTCTCTTCACACACCATCGCTTCTaGCACTCCGATCCAAAGAAA +
Preference number: 4 (lower is better)
Translates to: LGTTTWGVKTINIIICLFTHHRF*HSDPKK
Trigger: TTTCTTTGGATCGGAGTGGCAGAAGCGATGGTGTGT...GAAGAGACATATGATGATATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000581400.2
ENST00000581419.1
ENST00000584709.5
CDS-3UTR GCA 90 bp AGTAGGGAGTGGGAACTTTTGATGATCAGTTTCCTCATAAAGGCAGGAGAGAGGTCCTCTTCTAGATCATaGTCTTCATCTGGCAAGACT +
Preference number: 4 (lower is better)
Translates to: SREWELLMISFLIKAGERSSSRS*SSSGKT
Trigger: AGTCTTGCCAGATGAAGAGCATGATCTAGAAGAGGA...CCTCTCTCCTGCCTTTATGAGGAAACTGATCATCAAAAGTTCCCACTCCCTACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CCA 90 bp CACTGGGAACCACAACTTGGGGAGTCAAAACCATCAATATCATCATATGTCTCTGTCTCTGGCTTCTGCTaGACTAGTAGCTGTAAACTC +
Preference number: 4 (lower is better)
Translates to: HWEPQLGESKPSISSYVSVSGFC*TSSCKL
Trigger: GAGTTTACAGCTACTAGTCCAGCAGAAGCCAGAGAC...AGAGACATATGATGATATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581419.1
ENST00000584709.5
CDS-3UTR CCA 90 bp CTGGGAACCACAACTTGGGGAGTCAAAACCATCAATATCATCATATGTCTCTTCGGCCCTGGTAGTAACTaGCATAGTCTACTCCTTTTC +
Preference number: 4 (lower is better)
Translates to: LGTTTWGVKTINIIICLFGPGSN*HSLLLF
Trigger: GAAAAGGAGTAGACTATGCCAGTTACTACCAGGGCC...GAAGAGACATATGATGATATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000581400.2
CDS-3UTR CCA 90 bp TGTGAAAAGCTTGTGGAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGCAGATGTGGTTGTGTaGACACATTTAGAGATGGGG +
Preference number: 4 (lower is better)
Translates to: CEKLVEKADVVVWTHLEMADVVV*THLEMG
Trigger: CCCCATCTCTAAATGTGTCCACACAACCACATCTGC...CATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTCCACAAGCTTTTCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR CCA 90 bp CTTGTGGAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGAGCTTTGTGAAAAGCTTGTaGAAAAGGCAGATGTGGTTG +
Preference number: 4 (lower is better)
Translates to: LVEKADVVVWTHLEMGMSFVKSL*KRQMWL
Trigger: CAACCACATCTGCCTTTTCCACAAGCTTTTCACAAA...GCTCATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTCCACAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR CCA 90 bp ACTGGGAACCACAACTTGGGGAGTCAAAACCATCAATATCATCATATGTCTCTTGGCCCTGGTAGTAACTaGCATAGTCTCCTTTTCGTC +
Preference number: 4 (lower is better)
Translates to: TGNHNLGSQNHQYHHMSLGPGSN*HSLLFV
Trigger: GACGAAAAGGAGACTATGCCAGTTACTACCAGGGCC...AAGAGACATATGATGATATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS-3UTR TCA 90 bp TTTTCAAACCAGCCAGAACAACCAGTAATGTCCTCCTCCCAAGGTTTCCTTCTCACGTTATCAAGTTCTTaGGCTCCTTTTACGATGTCT +
Preference number: 4 (lower is better)
Translates to: FSNQPEQPVMSSSQGFLLTLSSS*APFTMS
Trigger: AGACATCGTAAAAGGAGCTCAAGAACTTGATAACGT...GAGAAGGAAACCTTGGGAGGAGGACATTACTGGTTGTTCTGGCTGGTTTGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR TCA 90 bp GTGCTTTTCAAACCAGCCAGAACAACCAGTAATGTCCTCCTCCCAAGGTTTCCTCCAAGTATCCTTGCTTaGTTACGTTATCAAGTTCTT +
Preference number: 4 (lower is better)
Translates to: VLFKPARTTSNVLLPRFPPSILA*LRYQVL
Trigger: AAGAACTTGATAACGTAATCAAGCAAGGATACTTGG...AGGAAACCTTGGGAGGAGGACATTACTGGTTGTTCTGGCTGGTTTGAAAAGCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR TCA 90 bp TCTTCTTTCTCCTCTGTAGGCTCTTTTATCCCCACACTCCCAGGCAAGATAGTGCCAAGTATCCTTGCTTaGTTACGTTATCAAGTTCTT +
Preference number: 4 (lower is better)
Translates to: SSFSSVGSFIPTLPGKIVPSILA*LRYQVL
Trigger: AAGAACTTGATAACGTAATCAAGCAAGGATACTTGG...CACTATCTTGCCTGGGAGTGTGGGGATAAAAGAGCCTACAGAGGAGAAAGAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR TCA 90 bp TACATGTTATACTCCTTGCTCAGAATACGGATGAGGTCACCCCGTTGGAAGGACGATCCAAAGAAACTATaGTCTTTGCTTTTCTTCTCC +
Preference number: 4 (lower is better)
Translates to: YMLYSLLRIRMRSPRWKDDPKKL*SLLFFS
Trigger: GGAGAAGAAAAGCAAAGATCATAGTTTCTTTGGATC...GTCCTTCCAACGGGGTGACCTCATCCGTATTCTGAGCAAGGAGTATAACATGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR GCA 90 bp ACTAGCATTAGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTGTCTCTGTGATCCCTTaGAACAGCGCTGAGGTTCTC +
Preference number: 4 (lower is better)
Translates to: TSISMRNEEKLLHWQLSSVSVIP*NSAEVL
Trigger: GAGAACCTCAGCGCTGTTGCAAGGGATCACAGAGAC...AGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACTAATGCTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR GCA 90 bp AGAAACAAAGTAGTGGCCCACAAGTTCCACTCAACTATTAGGCAGTTCATTGGCTCCTCTTCTAGATCATaGTCTTCATCTGGCAAGACT +
Preference number: 4 (lower is better)
Translates to: RNKVVAHKFHSTIRQFIGSSSRS*SSSGKT
Trigger: AGTCTTGCCAGATGAAGAGCATGATCTAGAAGAGGA...GCCAATGAACTGCCTAATAGTTGAGTGGAACTTGTGGGCCACTACTTTGTTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CCA 90 bp AGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTTTCAGAGAAATAGTGGGTCTGCACTaGGAACCACAACTTGGGGAG +
Preference number: 4 (lower is better)
Translates to: SMRNEEKLLHWQLSSFREIVGLH*EPQLGE
Trigger: CTCCCCAAGTTGTGGTTCCCAGTGCAGACCCACTAT...TTCTCTGAAAGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CCA 90 bp AGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTTTCAGAGAAATGAGGTCACCCCGTTaGAAGGACAGTTCATCTGGC +
Preference number: 4 (lower is better)
Translates to: SMRNEEKLLHWQLSSFREMRSPR*KDSSSG
Trigger: GCCAGATGAACTGTCCTTCCAACGGGGTGACCTCAT...TTCTCTGAAAGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CCA 90 bp TTAGTAACAGGTTTGATGAACGTGCCTCTTCCCACTTGTCTTACTGGTAGCTTAGGCAGAAGTAGGGAGTaGGAACTTTTGATGATCAGT +
Preference number: 4 (lower is better)
Translates to: LVTGLMNVPLPTCLTGSLGRSRE*ELLMIS
Trigger: ACTGATCATCAAAAGTTCCCACTCCCTACTTCTGCC...TAAGCTACCAGTAAGACAAGTGGGAAGAGGCACGTTCATCAAACCTGTTACTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR CCA 90 bp TGTGAAAAGCTTGTGGAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGAGGTGTCAAGAGACTTaGGTCTCTTCAGCAAAGAGA +
Preference number: 4 (lower is better)
Translates to: CEKLVEKADVVVWTHLEMRCQET*VSSAKR
Trigger: TCTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCT...CATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTCCACAAGCTTTTCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR CCA 90 bp GATGATCAGTTTCCTCATAAAGGCAGGAGAGAGGGAAGAATATATTTCCTTCTCGCAGATGTGGTTGTGTaGACACATTTAGAGATGGGG +
Preference number: 4 (lower is better)
Translates to: DDQFPHKGRREGRIYFLLADVVV*THLEMG
Trigger: CCCCATCTCTAAATGTGTCCACACAACCACATCTGC...GAGAAGGAAATATATTCTTCCCTCTCTCCTGCCTTTATGAGGAAACTGATCATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000583844.5
CDS-3UTR TCA 90 bp TTCTTCTTTCTCCTCTGTAGGCTCTTTTATCCCCACACTCCCAGGCAAGATAGTCCAAGTATCCTTGCTTaGTTACGTTATCAAGTTCTT +
Preference number: 4 (lower is better)
Translates to: FFFLLCRLFYPHTPRQDSPSILA*LRYQVL
Trigger: AAGAACTTGATAACGTAATCAAGCAAGGATACTTGG...ACTATCTTGCCTGGGAGTGTGGGGATAAAAGAGCCTACAGAGGAGAAAGAAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR TCA 90 bp AAGATAGTGGGTCTGCACTGGGAACCACAACTTGGGGAGTCAAAACCATCAATACCAAGTATCCTTGCTTaGTTACGTTATCAAGTTCTT +
Preference number: 4 (lower is better)
Translates to: KIVGLHWEPQLGESKPSIPSILA*LRYQVL
Trigger: AAGAACTTGATAACGTAATCAAGCAAGGATACTTGG...TATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAGTGCAGACCCACTATCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000581400.2
ENST00000581419.1
ENST00000584709.5
CDS-3UTR TCA 90 bp GGAGTGGGAACTTTTGATGATCAGTTTCCTCATAAAGGCAGGAGAGAGGGAAGAGATCCAAAGAAACTATaGTCTTTGCTTTTCTTCTCC +
Preference number: 4 (lower is better)
Translates to: GVGTFDDQFPHKGRREGRDPKKL*SLLFFS
Trigger: GGAGAAGAAAAGCAAAGATCATAGTTTCTTTGGATC...TCTTCCCTCTCTCCTGCCTTTATGAGGAAACTGATCATCAAAAGTTCCCACTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR GCA 90 bp TGCGCCTATCCTGGGAGGTCAGTTCAAAGCAGGATTCTTTCTTGGAATCTCTTCTTCTCCAAGTATCCTTaGTTGATTACGTTATCAAGT +
Preference number: 4 (lower is better)
Translates to: CAYPGRSVQSRILSWNLFFSKYP*LITLSS
Trigger: ACTTGATAACGTAATCAAGCAAGGATACTTGGAGAA...GAAGAGATTCCAAGAAAGAATCCTGCTTTGAACTGACCTCCCAGGATAGGCGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000581419.1
ENST00000584709.5
CDS-3UTR CCA 90 bp TCCTCCTCATCCTCTTCATATGGAATGGTTAAGGAGCTCAGATCCTTTAACAAGCCTCTTCATATGGAATaGTTAAGGAGCTCAGATCCT +
Preference number: 4 (lower is better)
Translates to: SSSSSSYGMVKELRSFNKPLHME*LRSSDP
Trigger: AGGATCTGAGCTCCTTAACCATTCCATATGAAGAGG...CTTGTTAAAGGATCTGAGCTCCTTAACCATTCCATATGAAGAGGATGAGGAGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000581400.2
ENST00000581419.1
ENST00000584709.5
CDS-3UTR CCA 90 bp GGGAACCACAACTTGGGGAGTCAAAACCATCAATATCATCATATGTCTCTTCTTGGCAGAAGTAGGGAGTaGGAACTTTTGATGATCAGT +
Preference number: 4 (lower is better)
Translates to: GNHNLGSQNHQYHHMSLLGRSRE*ELLMIS
Trigger: ACTGATCATCAAAAGTTCCCACTCCCTACTTCTGCC...AAGAAGAGACATATGATGATATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS-3UTR CCA 90 bp AGAAACAAAGTAGTGGCCCACAAGTTCCACTCAACTATTAGGCAGTTCATTGGCGAAAAGCTACTTCACTaGCAACTCTCATCTTTCAGA +
Preference number: 4 (lower is better)
Translates to: RNKVVAHKFHSTIRQFIGEKLLH*QLSSFR
Trigger: TCTGAAAGATGAGAGTTGCCAGTGAAGTAGCTTTTC...GCCAATGAACTGCCTAATAGTTGAGTGGAACTTGTGGGCCACTACTTTGTTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584924.5
3UTR CAA 72 bp CTCCAAGTATCCTTGCTTGATTACGTTATCAAGTTCTaGAGCTCCTTTTACGATGTCTTCCATTCCCCAAGT +
Preference number: 4 (lower is better)
Translates to: LQVSLLDYVIKF*SSFYDVFHSPS
Trigger: ACTTGGGGAATGGAAGACATCGTAAAAGGAGCTCAAGAACTTGATAACGTAATCAAGCAAGGATACTTGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000581419.1
CDS-3UTR TCA 90 bp AGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTTTCAGAGAACTGGCTTTGATTTGCTaGAAGCCCCGTAGAATATGG +
Preference number: 4 (lower is better)
Translates to: SMRNEEKLLHWQLSSFRELALIC*KPRRIW
Trigger: CCATATTCTACGGGGCTTTCAGCAAATCAAAGCCAG...TTCTCTGAAAGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR TCA 90 bp AGAAACAAAGTAGTGGCCCACAAGTTCCACTCAACTATTAGGCAGTTCATTGGCGATCCAAAGAAACTATaGTCTTTGCTTTTCTTCTCC +
Preference number: 4 (lower is better)
Translates to: RNKVVAHKFHSTIRQFIGDPKKL*SLLFFS
Trigger: GGAGAAGAAAAGCAAAGATCATAGTTTCTTTGGATC...GCCAATGAACTGCCTAATAGTTGAGTGGAACTTGTGGGCCACTACTTTGTTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR GCA 90 bp GGTGGCAGAAGTAGGGAGTGGGAACTTTTGATGATCAGTTTCCTCATAAAGGCATTCTCCAAGTATCCTTaGTTGATTACGTTATCAAGT +
Preference number: 4 (lower is better)
Translates to: GGRSREWELLMISFLIKAFSKYP*LITLSS
Trigger: ACTTGATAACGTAATCAAGCAAGGATACTTGGAGAA...TGCCTTTATGAGGAAACTGATCATCAAAAGTTCCCACTCCCTACTTCTGCCACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR GCA 90 bp TGGCCCACAAGTTCCACTCAACTATTAGGCAGTTCATTGGCCATGGTTCTGATATTCTCCAAGTATCCTTaGTTGATTACGTTATCAAGT +
Preference number: 4 (lower is better)
Translates to: WPTSSTQLLGSSLAMVLIFSKYP*LITLSS
Trigger: ACTTGATAACGTAATCAAGCAAGGATACTTGGAGAA...TATCAGAACCATGGCCAATGAACTGCCTAATAGTTGAGTGGAACTTGTGGGCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR GCA 90 bp ACTAGCATTAGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTACACACCATCGCTTCTaGCACTCCGATCCAAAGAAA +
Preference number: 4 (lower is better)
Translates to: TSISMRNEEKLLHWQLSSTHHRF*HSDPKK
Trigger: TTTCTTTGGATCGGAGTGGCAGAAGCGATGGTGTGT...AGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACTAATGCTAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR GCA 90 bp TCATCCTCTTCATATGGAATGGTTAAGGAGCTCAGATCCTTTAACAAGAAACTTCCAGTCTCTGGCTTCTaGTGGACTAGTAGCTGTAAA +
Preference number: 4 (lower is better)
Translates to: SSSSYGMVKELRSFNKKLPVSGF*WTSSCK
Trigger: TTTACAGCTACTAGTCCAGCAGAAGCCAGAGACTGG...AAGTTTCTTGTTAAAGGATCTGAGCTCCTTAACCATTCCATATGAAGAGGATGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000581400.2
ENST00000581419.1
ENST00000584709.5
CDS-3UTR GCA 90 bp TGGGAACCACAACTTGGGGAGTCAAAACCATCAATATCATCATATGTCTCTTCTTCCTCTTCTAGATCATaGTCTTCATCTGGCAAGACT +
Preference number: 4 (lower is better)
Translates to: WEPQLGESKPSISSYVSSSSSRS*SSSGKT
Trigger: AGTCTTGCCAGATGAAGAGCATGATCTAGAAGAGGA...AGAAGAGACATATGATGATATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR CCA 90 bp ACTCCTTTTCGTCGAGTGCCACTCTCATCCTCTTCTAGATCATGCTCTTCATCTATCATGCTCTTCATCTaGCAAGACTTCATAAATATC +
Preference number: 4 (lower is better)
Translates to: TPFRRVPLSSSSRSCSSSIMLFI*QDFINI
Trigger: GATATTTATGAAGTCTTGCCAGATGAAGAGCATGAT...AGATGAAGAGCATGATCTAGAAGAGGATGAGAGTGGCACTCGACGAAAAGGAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000581400.2
CDS-3UTR CCA 90 bp ACTAGCATTAGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTGGTGAGATACTCCTTTaGAACAATCCCAACGAGGCT +
Preference number: 4 (lower is better)
Translates to: TSISMRNEEKLLHWQLSSGEILL*NNPNEA
Trigger: AGCCTCGTTGGGATTGTTCCAAAGGAGTATCTCACC...AGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACTAATGCTAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CCA 90 bp GTGGAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGAGCTATGAAGAATATATTTCCTaGGTTTCATCTTTCTTCCAC +
Preference number: 4 (lower is better)
Translates to: VEKADVVVWTHLEMGMSYEEYIS*VSSFFH
Trigger: GTGGAAGAAAGATGAAACCCAGGAAATATATTCTTC...ATAGCTCATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTCCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR TCA 90 bp AGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTTTCAGAGAAAATAGTACCTGGCTTTaGTTTGCTGAAAGCCCCGTA +
Preference number: 4 (lower is better)
Translates to: SMRNEEKLLHWQLSSFRENSTWL*FAESPV
Trigger: TACGGGGCTTTCAGCAAATCAAAGCCAGGTACTATT...TTCTCTGAAAGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR TCA 90 bp ACTAGCATTAGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTCTCATCCTGATAATCTaGCAAAAAGGGTGCATCGGA +
Preference number: 4 (lower is better)
Translates to: TSISMRNEEKLLHWQLSSLILII*QKGCIG
Trigger: TCCGATGCACCCTTTTTGTCAGATTATCAGGATGAG...AGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACTAATGCTAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR TCA 90 bp CTGGGAACCACAACTTGGGGAGTCAAAACCATCAATATCATCATATGTCTCTTCGATCCAAAGAAACTATaGTCTTTGCTTTTCTTCTCC +
Preference number: 4 (lower is better)
Translates to: LGTTTWGVKTINIIICLFDPKKL*SLLFFS
Trigger: GGAGAAGAAAAGCAAAGATCATAGTTTCTTTGGATC...GAAGAGACATATGATGATATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000581400.2
ENST00000581419.1
ENST00000584709.5
CDS-3UTR TCA 90 bp AGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTTTCAGAGAACATTGGCCATGGTTCTaGTACCTGGGTTTCATCTTT +
Preference number: 4 (lower is better)
Translates to: SMRNEEKLLHWQLSSFREHWPWF*YLGFIF
Trigger: AAAGATGAAACCCAGGTATCAGAACCATGGCCAATG...TTCTCTGAAAGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR GCA 90 bp GCACTGGGAACCACAACTTGGGGAGTCAAAACCATCAATATCATCATATGTCTCTTCTCCAAGTATCCTTaGTTGATTACGTTATCAAGT +
Preference number: 4 (lower is better)
Translates to: ALGTTTWGVKTINIIICLFSKYP*LITLSS
Trigger: ACTTGATAACGTAATCAAGCAAGGATACTTGGAGAA...GAGACATATGATGATATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAGTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000581400.2
ENST00000581419.1
ENST00000584709.5
CDS-3UTR GCA 90 bp TCCTCTTCATATGGAATGGTTAAGGAGCTCAGATCCTTTAACAAGAAACTTATTACACACCATCGCTTCTaGCACTCCGATCCAAAGAAA +
Preference number: 4 (lower is better)
Translates to: SSSYGMVKELRSFNKKLITHHRF*HSDPKK
Trigger: TTTCTTTGGATCGGAGTGGCAGAAGCGATGGTGTGT...AATAAGTTTCTTGTTAAAGGATCTGAGCTCCTTAACCATTCCATATGAAGAGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000581400.2
ENST00000581419.1
ENST00000584709.5
CDS-3UTR CCA 90 bp CTTGATTACGTTATCAAGTTCTTGAGCTCCTTTTACGATGTCTTCCATTCACTGCCTCTTCATATGGAATaGTTAAGGAGCTCAGATCCT +
Preference number: 4 (lower is better)
Translates to: LDYVIKFLSSFYDVFHSLPLHME*LRSSDP
Trigger: AGGATCTGAGCTCCTTAACCATTCCATATGAAGAGG...CAGTGAATGGAAGACATCGTAAAAGGAGCTCAAGAACTTGATAACGTAATCAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS-3UTR CCA 90 bp AGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTTTCAGAGAACTGGGAACCACAACTTaGGGAGTCAAAACCATCAAT +
Preference number: 4 (lower is better)
Translates to: SMRNEEKLLHWQLSSFRELGTTT*GVKTIN
Trigger: ATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAG...TTCTCTGAAAGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CCA 90 bp AGAAACAAAGTAGTGGCCCACAAGTTCCACTCAACTATTAGGCAGTTCATTGGCATCATGCTCTTCATCTaGCAAGACTTCATAAATATC +
Preference number: 4 (lower is better)
Translates to: RNKVVAHKFHSTIRQFIGIMLFI*QDFINI
Trigger: GATATTTATGAAGTCTTGCCAGATGAAGAGCATGAT...GCCAATGAACTGCCTAATAGTTGAGTGGAACTTGTGGGCCACTACTTTGTTTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584924.5
3UTR CAA 72 bp CTCCAAGTATCCTTGCTTGATTACGTTATCAAGTTCTaGAGCTCCTTTTACGATGTCTTCCATTCACTGATG +
Preference number: 4 (lower is better)
Translates to: LQVSLLDYVIKF*SSFYDVFHSLM
Trigger: CATCAGTGAATGGAAGACATCGTAAAAGGAGCTCAAGAACTTGATAACGTAATCAAGCAAGGATACTTGGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS-3UTR CCA 90 bp ACTAGCATTAGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTCCTCTTCATATGGAATaGTTAAGGAGCTCAGATCCT +
Preference number: 4 (lower is better)
Translates to: TSISMRNEEKLLHWQLSSPLHME*LRSSDP
Trigger: AGGATCTGAGCTCCTTAACCATTCCATATGAAGAGG...AGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACTAATGCTAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR TCA 90 bp ACTAGCATTAGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTACGTTATCAAGTTCTTaGGCTCCTTTTACGATGTCT +
Preference number: 4 (lower is better)
Translates to: TSISMRNEEKLLHWQLSSTLSSS*APFTMS
Trigger: AGACATCGTAAAAGGAGCTCAAGAACTTGATAACGT...AGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACTAATGCTAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR TCA 90 bp ACTAGCATTAGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTCCAAGTATCCTTGCTTaGTTACGTTATCAAGTTCTT +
Preference number: 4 (lower is better)
Translates to: TSISMRNEEKLLHWQLSSPSILA*LRYQVL
Trigger: AAGAACTTGATAACGTAATCAAGCAAGGATACTTGG...AGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACTAATGCTAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR GCA 90 bp TACGTTATCAAGTTCTTGAGCTCCTTTTACGATGTCTTCCATTCACTGATGGATTTCTCCAAGTATCCTTaGTTGATTACGTTATCAAGT +
Preference number: 4 (lower is better)
Translates to: YVIKFLSSFYDVFHSLMDFSKYP*LITLSS
Trigger: ACTTGATAACGTAATCAAGCAAGGATACTTGGAGAA...ATCCATCAGTGAATGGAAGACATCGTAAAAGGAGCTCAAGAACTTGATAACGTA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS GCA 90 bp CGCGGGCCCTGGTCGGGAGGCGGACGGGCTGGAAGGCGACCCGGCTaGACCGCGAGGCACCTGTACCTCAGCCGCGGTCGCCGCCCGCCC +
Preference number: 5 (lower is better)
Translates to: RGPWSGGGRAGRRPG*TARHLYLSRGRRPP
Trigger: GGGCGGGCGGCGACCGCGGCTGAGGTACAGGTGCCTCGCGGTGCAGCCGGGTCGCCTTCCAGCCCGTCCGCCTCCCGACCAGGGCCCGCG
80% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS CCA 90 bp GGAGCCAACGGATCTCCTCAGGGAGGGCGGCGGCCTGCATTTGGCTaGGCGGGAGAGAGGCGGGACGGGGCGCGGGCCCTGGTCGGGAGG +
Preference number: 5 (lower is better)
Translates to: GANGSPQGGRRPAFG*AGERRDGARALVGR
Trigger: CCTCCCGACCAGGGCCCGCGCCCCGTCCCGCCTCTCTCCCGCCCAGCCAAATGCAGGCCGCCGCCCTCCCTGAGGAGATCCGTTGGCTCC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000584709.5
ENST00000584924.5
CDS CCA 90 bp TCCAGGAGCCAACGGATCTCCTCAGGGAGGGCGGCGGCCTGCATTTaGCTGGGCGGGAGAGAGGCGGGACGGGGCGCGGGCCCTGGTCGG +
Preference number: 5 (lower is better)
Translates to: SRSQRISSGRAAACI*LGGREAGRGAGPGR
Trigger: CCGACCAGGGCCCGCGCCCCGTCCCGCCTCTCTCCCGCCCAGCCAAATGCAGGCCGCCGCCCTCCCTGAGGAGATCCGTTGGCTCCTGGA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000584709.5
ENST00000584924.5
CDS-3UTR CAA 90 bp GATACTCCTTTGGAACAATCCCAACGAGGCTGTTCAGTTCTCCCACCCACCAGCGGCGGCGGCCTGCATTaGGCTGGGCGGGAGAGAGGC +
Preference number: 5 (lower is better)
Translates to: DTPLEQSQRGCSVLPPTSGGGLH*AGRERG
Trigger: GCCTCTCTCCCGCCCAGCCAAATGCAGGCCGCCGCC...GCTGGTGGGTGGGAGAACTGAACAGCCTCGTTGGGATTGTTCCAAAGGAGTATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS-3UTR CAA 90 bp CTTACAGTCACTCTGAGGTGTCAAGAGACTTGGGTCTCTTCAGCAAAGAGAGGAGGCGGCGGCCTGCATTaGGCTGGGCGGGAGAGAGGC +
Preference number: 5 (lower is better)
Translates to: LTVTLRCQETWVSSAKRGGGGLH*AGRERG
Trigger: GCCTCTCTCCCGCCCAGCCAAATGCAGGCCGCCGCC...TCCTCTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTCAGAGTGACTGTAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CAA 90 bp AAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGGGAACTTTGCTGTGCTGTGTAGGTaGCAGACAGGATGGCTGGAG +
Preference number: 5 (lower is better)
Translates to: KRGVQGVGGVAEVGSGNFAVLCR*QTGWLE
Trigger: CTCCAGCCATCCTGTCTGCAACCTACACAGCACAGC...AAAGTTCCCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000583844.5
CDS-3UTR CAA 90 bp TTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGGGAGGTGTCAAGAGACTaGGGTCTCTTCAGCAAAGAG +
Preference number: 5 (lower is better)
Translates to: FSKERSPRRWWGGRSREWEVSRD*GLFSKE
Trigger: CTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTC...CCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS TCA 90 bp CTGGCTAACACGGTGAAACCCCGTCTCTACCTCATCCTGATAATCTaGCAAAAAGGGTGCATCGGATGTGAGGGACAGGCCAAGAGTCCC +
Preference number: 5 (lower is better)
Translates to: LANTVKPRLYLILII*QKGCIGCEGQAKSP
Trigger: GGGACTCTTGGCCTGTCCCTCACATCCGATGCACCCTTTTTGTCAGATTATCAGGATGAGGTAGAGACGGGGTTTCACCGTGTTAGCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000581419.1
CDS-3UTR CAA 90 bp AAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGGGAACTTTGAGGTGTCAAGAGACTaGGGTCTCTTCAGCAAAGAG +
Preference number: 5 (lower is better)
Translates to: KRGVQGVGGVAEVGSGNFEVSRD*GLFSKE
Trigger: CTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTC...AAAGTTCCCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR CAA 90 bp ACTAGCATTAGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTGGCGGCGGCCTGCATTaGGCTGGGCGGGAGAGAGGC +
Preference number: 5 (lower is better)
Translates to: TSISMRNEEKLLHWQLSSGGGLH*AGRERG
Trigger: GCCTCTCTCCCGCCCAGCCAAATGCAGGCCGCCGCC...AGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACTAATGCTAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CAA 90 bp CTCCCAGGCAAGATAGTGGGTCTGCACTGGGAACCACAACTTGGGGAGTCAAAAGGTTTAGTAACAGGTTaGATGAACGTGCCTCTTCCC +
Preference number: 5 (lower is better)
Translates to: LPGKIVGLHWEPQLGESKGLVTG*MNVPLP
Trigger: GGGAAGAGGCACGTTCATCAAACCTGTTACTAAACC...TTTTGACTCCCCAAGTTGTGGTTCCCAGTGCAGACCCACTATCTTGCCTGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS TCA 90 bp GAAAGCCCCGTAGAATATGGTCTCTGTGATCCCTTGCAACAGCGCTaGGGTTCTCATTCCGCAAACCTTCTGCCAGAAACTCTTCAGCAT +
Preference number: 5 (lower is better)
Translates to: ESPVEYGLCDPLQQR*GSHSANLLPETLQH
Trigger: ATGCTGAAGAGTTTCTGGCAGAAGGTTTGCGGAATGAGAACCTCAGCGCTGTTGCAAGGGATCACAGAGACCATATTCTACGGGGCTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000584709.5
ENST00000584924.5
CDS TCA 90 bp CCATTCCCTCATCCTGATAATCTGACAAAAAGGGTGCATCGGATGTaGGGGACAGGCCAAGAGTCCCGCTGTGATTATCATCAGAGCTGT +
Preference number: 5 (lower is better)
Translates to: PFPHPDNLTKRVHRM*GTGQESRCDYHQSC
Trigger: ACAGCTCTGATGATAATCACAGCGGGACTCTTGGCCTGTCCCTCACATCCGATGCACCCTTTTTGTCAGATTATCAGGATGAGGGAATGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000581400.2
ENST00000584924.5
CDS TCA 90 bp AGGTTGCAGACAGGATGGCTGGAGATTGAGCATCTGTCTTGGCCTTaGGGTAACCTGGGTTTCATCTTTCTTCCACTTCAAAGGCAGTGG +
Preference number: 5 (lower is better)
Translates to: RLQTGWLEIEHLSWP*GNLGFIFLPLQRQW
Trigger: CCACTGCCTTTGAAGTGGAAGAAAGATGAAACCCAGGTTACCTCAAGGCCAAGACAGATGCTCAATCTCCAGCCATCCTGTCTGCAACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000583844.5
CDS-3UTR CAA 90 bp TTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGGCTTCTCCAAGTATCCTaGCTTGATTACGTTATCAAG +
Preference number: 5 (lower is better)
Translates to: FSKERSPRRWWGGRSREWLLQVS*LDYVIK
Trigger: CTTGATAACGTAATCAAGCAAGGATACTTGGAGAAG...CCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CAA 90 bp AAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGGGAACTTTTTCTTTGTGAAAAGCTaGTGGAAAAGGCAGATGTGG +
Preference number: 5 (lower is better)
Translates to: KRGVQGVGGVAEVGSGNFFFVKS*WKRQMW
Trigger: CCACATCTGCCTTTTCCACAAGCTTTTCACAAAGAA...AAAGTTCCCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR CAA 90 bp CTTACAGTCACTCTGAGGTGTCAAGAGACTTGGGTCTCTTCAGCAAAGAGAGGACAGGATGGCTGGAGATaGAGCATCTGTCTTGGCCTT +
Preference number: 5 (lower is better)
Translates to: LTVTLRCQETWVSSAKRGQDGWR*SICLGL
Trigger: AAGGCCAAGACAGATGCTCAATCTCCAGCCATCCTG...TCCTCTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTCAGAGTGACTGTAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000583844.5
CDS GCA 90 bp GCCTGCAAGACAGGAAAGCTCCCTGTATCCCTAGAGAGATGCAACTaGCAAGGGAAGGCATCCTCTCTGGTATGTAAAATAAAAGCACAG +
Preference number: 5 (lower is better)
Translates to: ACKTGKLPVSLERCN*QGKASSLVCKIKAQ
Trigger: CTGTGCTTTTATTTTACATACCAGAGAGGATGCCTTCCCTTGGCAGTTGCATCTCTCTAGGGATACAGGGAGCTTTCCTGTCTTGCAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000579336.1
CDS-3UTR CAA 90 bp TCTTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTTACGTTATCAAGTTCTaGAGCTCCTTTTACGATGTC +
Preference number: 5 (lower is better)
Translates to: SSAKRGVQGVGGVAEVGSYVIKF*SSFYDV
Trigger: GACATCGTAAAAGGAGCTCAAGAACTTGATAACGTA...ACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACTCCTCTCTTTGCTGAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CAA 90 bp GCTTACAGTCACTCTGAGGTGTCAAGAGACTTGGGTCTCTTCAGCAAAGAGAGGACTGGGAACCACAACTaGGGGAGTCAAAACCATCAA +
Preference number: 5 (lower is better)
Translates to: AYSHSEVSRDLGLFSKERTGNHN*GSQNHQ
Trigger: TTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAGT...CCTCTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTCAGAGTGACTGTAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CAA 90 bp GAGTGGGAACTTTTGATGATCAGTTTCCTCATAAAGGCAGGAGAGAGGGAAGAAGATGAGGTCACCCCGTaGGAAGGACAGTTCATCTGG +
Preference number: 5 (lower is better)
Translates to: EWELLMISFLIKAGEREEDEVTP*EGQFIW
Trigger: CCAGATGAACTGTCCTTCCAACGGGGTGACCTCATC...TTCTTCCCTCTCTCCTGCCTTTATGAGGAAACTGATCATCAAAAGTTCCCACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CAA 90 bp GCACTGGGAACCACAACTTGGGGAGTCAAAACCATCAATATCATCATATGTCTCGATGAGGTCACCCCGTaGGAAGGACAGTTCATCTGG +
Preference number: 5 (lower is better)
Translates to: ALGTTTWGVKTINIIICLDEVTP*EGQFIW
Trigger: CCAGATGAACTGTCCTTCCAACGGGGTGACCTCATC...GAGACATATGATGATATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR CAA 90 bp TGTCAAGAGACTTGGGTCTCTTCAGCAAAGAGAGGAGTCCAAGGCGTTGGTGGGTACATGTTATACTCCTaGCTCAGAATACGGATGAGG +
Preference number: 5 (lower is better)
Translates to: CQETWVSSAKRGVQGVGGYMLYS*LRIRMR
Trigger: CCTCATCCGTATTCTGAGCAAGGAGTATAACATGTA...CCCACCAACGCCTTGGACTCCTCTCTTTGCTGAAGAGACCCAAGTCTCTTGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CAA 90 bp CTTGCTCAGAATACGGATGAGGTCACCCCGTTGGAAGGACAGTTCATCTGGCTGTACATGTTATACTCCTaGCTCAGAATACGGATGAGG +
Preference number: 5 (lower is better)
Translates to: LAQNTDEVTPLEGQFIWLYMLYS*LRIRMR
Trigger: CCTCATCCGTATTCTGAGCAAGGAGTATAACATGTA...CAGCCAGATGAACTGTCCTTCCAACGGGGTGACCTCATCCGTATTCTGAGCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR CAA 90 bp AGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGGGAACTTTTGATGATCAGGGAGTGGGAACTTTaGATGATCAGTTTCCTCATA +
Preference number: 5 (lower is better)
Translates to: SPRRWWGGRSREWELLMIREWEL*MISFLI
Trigger: TATGAGGAAACTGATCATCAAAAGTTCCCACTCCCT...GATCATCAAAAGTTCCCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR CAA 90 bp CAGCCAGAACAACCAGTAATGTCCTCCTCCCAAGGTTTCCTTCTCTCTCACCTTGGTTTAGTAACAGGTTaGATGAACGTGCCTCTTCCC +
Preference number: 5 (lower is better)
Translates to: QPEQPVMSSSQGFLLSHLGLVTG*MNVPLP
Trigger: GGGAAGAGGCACGTTCATCAAACCTGTTACTAAACC...AAGGTGAGAGAGAAGGAAACCTTGGGAGGAGGACATTACTGGTTGTTCTGGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS TCA 90 bp AAATACCCTCATCCTGATAATCTGACAAAAAGGGTGCATCGGATGTaGGGGACAGGCCAAGAGTCCCGCTGTGATTATCATCAGAGCTGT +
Preference number: 5 (lower is better)
Translates to: KYPHPDNLTKRVHRM*GTGQESRCDYHQSC
Trigger: ACAGCTCTGATGATAATCACAGCGGGACTCTTGGCCTGTCCCTCACATCCGATGCACCCTTTTTGTCAGATTATCAGGATGAGGGTATTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS GCA 90 bp CTGCTTGCCTGCAAGACAGGAAAGCTCCCTGTATCCCTAGAGAGATaGAACTGCCAAGGGAAGGCATCCTCTCTGGTATGTAAAATAAAA +
Preference number: 5 (lower is better)
Translates to: LLACKTGKLPVSLER*NCQGKASSLVCKIK
Trigger: TTTTATTTTACATACCAGAGAGGATGCCTTCCCTTGGCAGTTGCATCTCTCTAGGGATACAGGGAGCTTTCCTGTCTTGCAGGCAAGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579336.1
CDS-3UTR CAA 90 bp CTCAGAATACGGATGAGGTCACCCCGTTGGAAGGACAGTTCATCTGGCTGGTCACTTCTCCAAGTATCCTaGCTTGATTACGTTATCAAG +
Preference number: 5 (lower is better)
Translates to: LRIRMRSPRWKDSSSGWSLLQVS*LDYVIK
Trigger: CTTGATAACGTAATCAAGCAAGGATACTTGGAGAAG...TGACCAGCCAGATGAACTGTCCTTCCAACGGGGTGACCTCATCCGTATTCTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR CAA 90 bp TCTTCTTTCTCCTCTGTAGGCTCTTTTATCCCCACACTCCCAGGCAAGATAGTGACTGGGAACCACAACTaGGGGAGTCAAAACCATCAA +
Preference number: 5 (lower is better)
Translates to: SSFSSVGSFIPTLPGKIVTGNHN*GSQNHQ
Trigger: TTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAGT...CACTATCTTGCCTGGGAGTGTGGGGATAAAAGAGCCTACAGAGGAGAAAGAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR CAA 90 bp CTGCGCCTATCCTGGGAGGTCAGTTCAAAGCAGGATTCTTTCTTGGAATCTCTTACTGGGAACCACAACTaGGGGAGTCAAAACCATCAA +
Preference number: 5 (lower is better)
Translates to: LRLSWEVSSKQDSFLESLTGNHN*GSQNHQ
Trigger: TTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAGT...AAGAGATTCCAAGAAAGAATCCTGCTTTGAACTGACCTCCCAGGATAGGCGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581419.1
ENST00000584709.5
CDS-3UTR CAA 90 bp AGTCCAAGGCGTTGGTGGGGTGGCAGAAGTAGGGAGTGGGAACTTTTGATGATCTCCAAGTATCCTTGCTaGATTACGTTATCAAGTTCT +
Preference number: 5 (lower is better)
Translates to: SPRRWWGGRSREWELLMISKYPC*ITLSSS
Trigger: AGAACTTGATAACGTAATCAAGCAAGGATACTTGGA...GATCATCAAAAGTTCCCACTCCCTACTTCTGCCACCCCACCAACGCCTTGGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CAA 90 bp ACTCCCAGGCAAGATAGTGGGTCTGCACTGGGAACCACAACTTGGGGAGTCAAATCCAAGTATCCTTGCTaGATTACGTTATCAAGTTCT +
Preference number: 5 (lower is better)
Translates to: TPRQDSGSALGTTTWGVKSKYPC*ITLSSS
Trigger: AGAACTTGATAACGTAATCAAGCAAGGATACTTGGA...TTTGACTCCCCAAGTTGTGGTTCCCAGTGCAGACCCACTATCTTGCCTGGGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000581400.2
ENST00000581419.1
ENST00000584709.5
CDS-3UTR CAA 90 bp GGTGGCAGAAGTAGGGAGTGGGAACTTTTGATGATCAGTTTCCTCATAAAGGCAAAGCAGGATTCTTTCTaGGAATCTCTTCGCAGGTGG +
Preference number: 5 (lower is better)
Translates to: GGRSREWELLMISFLIKAKQDSF*ESLRRW
Trigger: CCACCTGCGAAGAGATTCCAAGAAAGAATCCTGCTT...TGCCTTTATGAGGAAACTGATCATCAAAAGTTCCCACTCCCTACTTCTGCCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CAA 90 bp GTGGAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGAGCTATACTGGGAACCACAACTaGGGGAGTCAAAACCATCAA +
Preference number: 5 (lower is better)
Translates to: VEKADVVVWTHLEMGMSYTGNHN*GSQNHQ
Trigger: TTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAGT...ATAGCTCATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CAA 90 bp GGGAACCACAACTTGGGGAGTCAAAACCATCAATATCATCATATGTCTCTTCTTGATGAGGTCACCCCGTaGGAAGGACAGTTCATCTGG +
Preference number: 5 (lower is better)
Translates to: GNHNLGSQNHQYHHMSLLDEVTP*EGQFIW
Trigger: CCAGATGAACTGTCCTTCCAACGGGGTGACCTCATC...AAGAAGAGACATATGATGATATTGATGGTTTTGACTCCCCAAGTTGTGGTTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR CAA 90 bp GAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGAGCTATGACGGTTTAGTAACAGGTTaGATGAACGTGCCTCTTCCC +
Preference number: 5 (lower is better)
Translates to: EKADVVVWTHLEMGMSYDGLVTG*MNVPLP
Trigger: GGGAAGAGGCACGTTCATCAAACCTGTTACTAAACC...GTCATAGCTCATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS TCA 90 bp TACTCTCCTATTCATTCTTCTCAAAATACCCTCATCCTGATAATCTaGCAAAAAGGGTGCATCGGATGTGAGGGACAGGCCAAGAGTCCC +
Preference number: 5 (lower is better)
Translates to: YSPIHSSQNTLILII*QKGCIGCEGQAKSP
Trigger: GGGACTCTTGGCCTGTCCCTCACATCCGATGCACCCTTTTTGTCAGATTATCAGGATGAGGGTATTTTGAGAAGAATGAATAGGAGAGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS GCA 90 bp GGCTACTGCGACAGTAAGGCAGATATCACTGCCAAGCTAGGGAAATaGAACGTGAAAGGTTATTTTGCCAAAAGAGTACAACAGAGACAG +
Preference number: 5 (lower is better)
Translates to: GYCDSKADITAKLGK*NVKGYFAKRVQQRQ
Trigger: CTGTCTCTGTTGTACTCTTTTGGCAAAATAACCTTTCACGTTGCATTTCCCTAGCTTGGCAGTGATATCTGCCTTACTGTCGCAGTAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000579336.1
CDS-3UTR CAA 90 bp TACTCCTTGCTCAGAATACGGATGAGGTCACCCCGTTGGAAGGACAGTTCATCTTACGTTATCAAGTTCTaGAGCTCCTTTTACGATGTC +
Preference number: 5 (lower is better)
Translates to: YSLLRIRMRSPRWKDSSSYVIKF*SSFYDV
Trigger: GACATCGTAAAAGGAGCTCAAGAACTTGATAACGTA...AGATGAACTGTCCTTCCAACGGGGTGACCTCATCCGTATTCTGAGCAAGGAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR CAA 90 bp TTAGTAACAGGTTTGATGAACGTGCCTCTTCCCACTTGTCTTACTGGTAGCTTAGAGGTGTCAAGAGACTaGGGTCTCTTCAGCAAAGAG +
Preference number: 5 (lower is better)
Translates to: LVTGLMNVPLPTCLTGSLEVSRD*GLFSKE
Trigger: CTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTC...TAAGCTACCAGTAAGACAAGTGGGAAGAGGCACGTTCATCAAACCTGTTACTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR CAA 90 bp TACTCCTTGCTCAGAATACGGATGAGGTCACCCCGTTGGAAGGACAGTTCATCTTCCAAGTATCCTTGCTaGATTACGTTATCAAGTTCT +
Preference number: 5 (lower is better)
Translates to: YSLLRIRMRSPRWKDSSSSKYPC*ITLSSS
Trigger: AGAACTTGATAACGTAATCAAGCAAGGATACTTGGA...AGATGAACTGTCCTTCCAACGGGGTGACCTCATCCGTATTCTGAGCAAGGAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000581400.2
ENST00000584709.5
CDS-3UTR CAA 90 bp TACAGTCACTCTGAGGTGTCAAGAGACTTGGGTCTCTTCAGCAAAGAGAGGAGTCTTCTCCAAGTATCCTaGCTTGATTACGTTATCAAG +
Preference number: 5 (lower is better)
Translates to: YSHSEVSRDLGLFSKERSLLQVS*LDYVIK
Trigger: CTTGATAACGTAATCAAGCAAGGATACTTGGAGAAG...ACTCCTCTCTTTGCTGAAGAGACCCAAGTCTCTTGACACCTCAGAGTGACTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CAA 90 bp CTGCGCCTATCCTGGGAGGTCAGTTCAAAGCAGGATTCTTTCTTGGAATCTCTTCTTCTCCAAGTATCCTaGCTTGATTACGTTATCAAG +
Preference number: 5 (lower is better)
Translates to: LRLSWEVSSKQDSFLESLLLQVS*LDYVIK
Trigger: CTTGATAACGTAATCAAGCAAGGATACTTGGAGAAG...AAGAGATTCCAAGAAAGAATCCTGCTTTGAACTGACCTCCCAGGATAGGCGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000581419.1
ENST00000584709.5
CDS-3UTR CAA 90 bp GTGGGAACTTTTGATGATCAGTTTCCTCATAAAGGCAGGAGAGAGGGAAGAATAAAGCAGGATTCTTTCTaGGAATCTCTTCGCAGGTGG +
Preference number: 5 (lower is better)
Translates to: VGTFDDQFPHKGRREGRIKQDSF*ESLRRW
Trigger: CCACCTGCGAAGAGATTCCAAGAAAGAATCCTGCTT...TATTCTTCCCTCTCTCCTGCCTTTATGAGGAAACTGATCATCAAAAGTTCCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CAA 90 bp ACTAGCATTAGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTGATGAGGTCACCCCGTaGGAAGGACAGTTCATCTGG +
Preference number: 5 (lower is better)
Translates to: TSISMRNEEKLLHWQLSSDEVTP*EGQFIW
Trigger: CCAGATGAACTGTCCTTCCAACGGGGTGACCTCATC...AGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACTAATGCTAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CAA 90 bp GGTGGCAGAAGTAGGGAGTGGGAACTTTTGATGATCAGTTTCCTCATAAAGGCATACATGTTATACTCCTaGCTCAGAATACGGATGAGG +
Preference number: 5 (lower is better)
Translates to: GGRSREWELLMISFLIKAYMLYS*LRIRMR
Trigger: CCTCATCCGTATTCTGAGCAAGGAGTATAACATGTA...TGCCTTTATGAGGAAACTGATCATCAAAAGTTCCCACTCCCTACTTCTGCCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336915.11
ENST00000584709.5
CDS-3UTR CAA 90 bp TGGCCCACAAGTTCCACTCAACTATTAGGCAGTTCATTGGCCATGGTTCTGATATACATGTTATACTCCTaGCTCAGAATACGGATGAGG +
Preference number: 5 (lower is better)
Translates to: WPTSSTQLLGSSLAMVLIYMLYS*LRIRMR
Trigger: CCTCATCCGTATTCTGAGCAAGGAGTATAACATGTA...TATCAGAACCATGGCCAATGAACTGCCTAATAGTTGAGTGGAACTTGTGGGCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CAA 90 bp TTTCCTTCTCCTTTTATCTTTCCTGCTGTGCTGTGTAGGTTGCAGACAGGATGGAGGGAGTGGGAACTTTaGATGATCAGTTTCCTCATA +
Preference number: 5 (lower is better)
Translates to: FPSPFIFPAVLCRLQTGWREWEL*MISFLI
Trigger: TATGAGGAAACTGATCATCAAAAGTTCCCACTCCCT...CCATCCTGTCTGCAACCTACACAGCACAGCAGGAAAGATAAAAGGAGAAGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000583844.5
CDS-3UTR CAA 90 bp GAAAAGGCAGATGTGGTTGTGTGGACACATTTAGAGATGGGGATGAGCTATGACTTCTTTGTGAAAAGCTaGTGGAAAAGGCAGATGTGG +
Preference number: 5 (lower is better)
Translates to: EKADVVVWTHLEMGMSYDFFVKS*WKRQMW
Trigger: CCACATCTGCCTTTTCCACAAGCTTTTCACAAAGAA...GTCATAGCTCATCCCCATCTCTAAATGTGTCCACACAACCACATCTGCCTTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR CAA 90 bp GGAGTGGGAACTTTTGATGATCAGTTTCCTCATAAAGGCAGGAGAGAGGGAAGATTCTTTGTGAAAAGCTaGTGGAAAAGGCAGATGTGG +
Preference number: 5 (lower is better)
Translates to: GVGTFDDQFPHKGRREGRFFVKS*WKRQMW
Trigger: CCACATCTGCCTTTTCCACAAGCTTTTCACAAAGAA...TCTTCCCTCTCTCCTGCCTTTATGAGGAAACTGATCATCAAAAGTTCCCACTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000583844.5
ENST00000584709.5
CDS-3UTR CAA 90 bp TGGCCCACAAGTTCCACTCAACTATTAGGCAGTTCATTGGCCATGGTTCTGATATCCAAGTATCCTTGCTaGATTACGTTATCAAGTTCT +
Preference number: 5 (lower is better)
Translates to: WPTSSTQLLGSSLAMVLISKYPC*ITLSSS
Trigger: AGAACTTGATAACGTAATCAAGCAAGGATACTTGGA...TATCAGAACCATGGCCAATGAACTGCCTAATAGTTGAGTGGAACTTGTGGGCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CAA 90 bp GAACCACAACTTGGGGAGTCAAAACCATCAATATCATCATATGTCTCTTCTTTTAAGCAGGATTCTTTCTaGGAATCTCTTCGCAGGTGG +
Preference number: 5 (lower is better)
Translates to: EPQLGESKPSISSYVSSFKQDSF*ESLRRW
Trigger: CCACCTGCGAAGAGATTCCAAGAAAGAATCCTGCTT...AAAAGAAGAGACATATGATGATATTGATGGTTTTGACTCCCCAAGTTGTGGTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000581419.1
ENST00000584709.5
CDS-3UTR CAA 90 bp AGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTTTCAGAGAAAAGCAGGATTCTTTCTaGGAATCTCTTCGCAGGTGG +
Preference number: 5 (lower is better)
Translates to: SMRNEEKLLHWQLSSFREKQDSF*ESLRRW
Trigger: CCACCTGCGAAGAGATTCCAAGAAAGAATCCTGCTT...TTCTCTGAAAGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CAA 90 bp ACTAGCATTAGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTACTGGGAACCACAACTaGGGGAGTCAAAACCATCAA +
Preference number: 5 (lower is better)
Translates to: TSISMRNEEKLLHWQLSSTGNHN*GSQNHQ
Trigger: TTGATGGTTTTGACTCCCCAAGTTGTGGTTCCCAGT...AGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACTAATGCTAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CAA 90 bp ACTAGCATTAGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTCTATTAGGCAGTTCATaGGCCATGGTTCTGATACCT +
Preference number: 5 (lower is better)
Translates to: TSISMRNEEKLLHWQLSSLLGSS*AMVLIP
Trigger: AGGTATCAGAACCATGGCCAATGAACTGCCTAATAG...AGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACTAATGCTAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CAA 90 bp TCATCCTCTTCATATGGAATGGTTAAGGAGCTCAGATCCTTTAACAAGAAACTTAGGGAGTGGGAACTTTaGATGATCAGTTTCCTCATA +
Preference number: 5 (lower is better)
Translates to: SSSSYGMVKELRSFNKKLREWEL*MISFLI
Trigger: TATGAGGAAACTGATCATCAAAAGTTCCCACTCCCT...AAGTTTCTTGTTAAAGGATCTGAGCTCCTTAACCATTCCATATGAAGAGGATGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS-3UTR CAA 90 bp AGTATGAGAAATGAAGAAAAGCTACTTCACTGGCAACTCTCATCTTTCAGAGAACTTCTCCAAGTATCCTaGCTTGATTACGTTATCAAG +
Preference number: 5 (lower is better)
Translates to: SMRNEEKLLHWQLSSFRELLQVS*LDYVIK
Trigger: CTTGATAACGTAATCAAGCAAGGATACTTGGAGAAG...TTCTCTGAAAGATGAGAGTTGCCAGTGAAGTAGCTTTTCTTCATTTCTCATACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS-3UTR CAA 90 bp TCATCCTCTTCATATGGAATGGTTAAGGAGCTCAGATCCTTTAACAAGAAACTTTCCAAGTATCCTTGCTaGATTACGTTATCAAGTTCT +
Preference number: 5 (lower is better)
Translates to: SSSSYGMVKELRSFNKKLSKYPC*ITLSSS
Trigger: AGAACTTGATAACGTAATCAAGCAAGGATACTTGGA...AAGTTTCTTGTTAAAGGATCTGAGCTCCTTAACCATTCCATATGAAGAGGATGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000581400.2
ENST00000581419.1
ENST00000584709.5
CDS GCA 72 bp TGGTCGGGAGGCGGACGGGCTGGAAGGCGACCCGGCTaGACCGCGAGGCACCTGTACCTCAGCCGCGGTCGC +
Preference number: 6 (lower is better)
Translates to: WSGGGRAGRRPG*TARHLYLSRGR
Trigger: GCGACCGCGGCTGAGGTACAGGTGCCTCGCGGTGCAGCCGGGTCGCCTTCCAGCCCGTCCGCCTCCCGACCA
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS CCA 72 bp CAACGGATCTCCTCAGGGAGGGCGGCGGCCTGCATTTaGCTGGGCGGGAGAGAGGCGGGACGGGGCGCGGGC +
Preference number: 6 (lower is better)
Translates to: QRISSGRAAACI*LGGREAGRGAG
Trigger: GCCCGCGCCCCGTCCCGCCTCTCTCCCGCCCAGCCAAATGCAGGCCGCCGCCCTCCCTGAGGAGATCCGTTG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000584709.5
ENST00000584924.5
CDS CAA 90 bp TTCCAGGAGCCAACGGATCTCCTCAGGGAGGGCGGCGGCCTGCATTaGGCTGGGCGGGAGAGAGGCGGGACGGGGCGCGGGCCCTGGTCG +
Preference number: 6 (lower is better)
Translates to: FQEPTDLLREGGGLH*AGRERGGTGRGPWS
Trigger: CGACCAGGGCCCGCGCCCCGTCCCGCCTCTCTCCCGCCCAGCCAAATGCAGGCCGCCGCCCTCCCTGAGGAGATCCGTTGGCTCCTGGAA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000584709.5
ENST00000584924.5
CDS TCA 72 bp GCATCGGATGTGAGGGACAGGCCAAGAGTCCCGCTGTaGTTATCATCAGAGCTGTCCTGTCCAATGTCTCCC +
Preference number: 6 (lower is better)
Translates to: ASDVRDRPRVPL*LSSELSCPMSP
Trigger: GGGAGACATTGGACAGGACAGCTCTGATGATAATCACAGCGGGACTCTTGGCCTGTCCCTCACATCCGATGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000336915.11
ENST00000581400.2
ENST00000584709.5
ENST00000584924.5
CDS TCA 72 bp ACGGTGAAACCCCGTCTCTACCTCATCCTGATAATCTaGCAAAAAGGGTGCATCGGATGTGAGGGACAGGCC +
Preference number: 6 (lower is better)
Translates to: TVKPRLYLILII*QKGCIGCEGQA
Trigger: GGCCTGTCCCTCACATCCGATGCACCCTTTTTGTCAGATTATCAGGATGAGGTAGAGACGGGGTTTCACCGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000581419.1
CDS TCA 72 bp GTAGAATATGGTCTCTGTGATCCCTTGCAACAGCGCTaGGGTTCTCATTCCGCAAACCTTCTGCCAGAAACT +
Preference number: 6 (lower is better)
Translates to: VEYGLCDPLQQR*GSHSANLLPET
Trigger: AGTTTCTGGCAGAAGGTTTGCGGAATGAGAACCTCAGCGCTGTTGCAAGGGATCACAGAGACCATATTCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000584709.5
ENST00000584924.5
CDS TCA 72 bp CATCCTGATAATCTGACAAAAAGGGTGCATCGGATGTaGGGGACAGGCCAAGAGTCCCGCTGTGATTATCAT +
Preference number: 6 (lower is better)
Translates to: HPDNLTKRVHRM*GTGQESRCDYH
Trigger: ATGATAATCACAGCGGGACTCTTGGCCTGTCCCTCACATCCGATGCACCCTTTTTGTCAGATTATCAGGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336915.11
ENST00000581400.2
ENST00000584709.5
ENST00000584924.5
CDS TCA 72 bp TTTTACGATGTCTTCCATTCCCTCATCCTGATAATCTaGCAAAAAGGGTGCATCGGATGTGAGGGACAGGCC +
Preference number: 6 (lower is better)
Translates to: FYDVFHSLILII*QKGCIGCEGQA
Trigger: GGCCTGTCCCTCACATCCGATGCACCCTTTTTGTCAGATTATCAGGATGAGGGAATGGAAGACATCGTAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000581400.2
ENST00000584924.5
CDS GCA 72 bp ACAGGAAAGCTCCCTGTATCCCTAGAGAGATGCAACTaGCAAGGGAAGGCATCCTCTCTGGTATGTAAAATA +
Preference number: 6 (lower is better)
Translates to: TGKLPVSLERCN*QGKASSLVCKI
Trigger: TATTTTACATACCAGAGAGGATGCCTTCCCTTGGCAGTTGCATCTCTCTAGGGATACAGGGAGCTTTCCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000579336.1
CDS CCA 72 bp GGTCACCATGGCAATCCCATAGGCCCTGGTAGTAACTaGCATAGTCTACTGATCAAAGAGAGGAGAAATCAA +
Preference number: 6 (lower is better)
Translates to: GHHGNPIGPGSN*HSLLIKERRNQ
Trigger: TTGATTTCTCCTCTCTTTGATCAGTAGACTATGCCAGTTACTACCAGGGCCTATGGGATTGCCATGGTGACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000579476.5
CDS CAA 72 bp TGGCCCACAAGTTCCACTCAACTATTAGGCAGTTCATaGGCCATGGTTCTGATACCTGGGTTTCATCTTTCT +
Preference number: 6 (lower is better)
Translates to: WPTSSTQLLGSS*AMVLIPGFHLS
Trigger: AGAAAGATGAAACCCAGGTATCAGAACCATGGCCAATGAACTGCCTAATAGTTGAGTGGAACTTGTGGGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584924.5
CDS TCA 72 bp ATTCATTCTTCTCAAAATACCCTCATCCTGATAATCTaGCAAAAAGGGTGCATCGGATGTGAGGGACAGGCC +
Preference number: 6 (lower is better)
Translates to: IHSSQNTLILII*QKGCIGCEGQA
Trigger: GGCCTGTCCCTCACATCCGATGCACCCTTTTTGTCAGATTATCAGGATGAGGGTATTTTGAGAAGAATGAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000584709.5
CDS TCA 72 bp TCCAAGTATCCTTGCTTGATTACGTTATCAAGTTCTTaGGCTCCTTTTACGATGTCTTCCATTCCCTCATCC +
Preference number: 6 (lower is better)
Translates to: SKYPCLITLSSS*APFTMSSIPSS
Trigger: GGATGAGGGAATGGAAGACATCGTAAAAGGAGCTCAAGAACTTGATAACGTAATCAAGCAAGGATACTTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000581400.2
ENST00000584924.5
CDS GCA 72 bp GACAGTAAGGCAGATATCACTGCCAAGCTAGGGAAATaGAACGTGAAAGGTTATTTTGCCAAAAGAGTACAA +
Preference number: 6 (lower is better)
Translates to: DSKADITAKLGK*NVKGYFAKRVQ
Trigger: TTGTACTCTTTTGGCAAAATAACCTTTCACGTTGCATTTCCCTAGCTTGGCAGTGATATCTGCCTTACTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000579336.1
CDS CAA 72 bp CTCCAAGTATCCTTGCTTGATTACGTTATCAAGTTCTaGAGCTCCTTTTACGATGTCTTCCATTCCCTCATC +
Preference number: 6 (lower is better)
Translates to: LQVSLLDYVIKF*SSFYDVFHSLI
Trigger: GATGAGGGAATGGAAGACATCGTAAAAGGAGCTCAAGAACTTGATAACGTAATCAAGCAAGGATACTTGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000581400.2
ENST00000584924.5
CDS CAA 90 bp GCTTTTCTTCTCCAAGTATCCTTGCTTGATTACGTTATCAAGTTCTaGAGCTCCTTTTACGATGTCTTCCATTCCCTCATCCTGATAATC +
Preference number: 6 (lower is better)
Translates to: AFLLQVSLLDYVIKF*SSFYDVFHSLILII
Trigger: GATTATCAGGATGAGGGAATGGAAGACATCGTAAAAGGAGCTCAAGAACTTGATAACGTAATCAAGCAAGGATACTTGGAGAAGAAAAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336915.11
ENST00000581400.2
ENST00000584924.5