RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SKA3 (Homo sapiens)

Ensembl gene IDs: ENSG00000165480

Ensembl transcript IDs: ENST00000298260.8, ENST00000314759.6, ENST00000400018.7, ENST00000462482.1, ENST00000465471.5

Found 278 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTGGAGGCTCCCGTGGCCATAGCTAACAGTGCACAGGAGGGCCCCTaGCCCAGGATGAGCCCTCAGAACCTTTTAGAGAGAGTGAAATTC +
Preference number: 1 (lower is better)
Translates to: LEAPVAIANSAQEGP*PRMSPQNLLERVKF
Trigger: GAATTTCACTCTCTCTAAAAGGTTCTGAGGGCTCATCCTGGGCCAGGGGCCCTCCTGTGCACTGTTAGCTATGGCCACGGGAGCCTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR TCA 90 bp GTGTTCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTaGGCAAGTAAAAGGTGTGGGACGGTCCTGAAAGGAGATGATGGG +
Preference number: 1 (lower is better)
Translates to: VFLLFANSNCIFRQH*ASKRCGTVLKGDDG
Trigger: CCCATCATCTCCTTTCAGGACCGTCCCACACCTTTTACTTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGAACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR CCA 90 bp GCAGAGTTCCTGGTTCCAACTGTTGAGACCTGTCTCTACCTCCAATaGTCACAGTATATAGTTACCCAGGCCTGGAAATCTCCCTCTTTT +
Preference number: 1 (lower is better)
Translates to: AEFLVPTVETCLYLQ*SQYIVTQAWKSPSF
Trigger: AAAAGAGGGAGATTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAGGTCTCAACAGTTGGAACCAGGAACTCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR TCA 90 bp AGCAGCTCATCCGGTTCTGTGGATTTATATACACACGGTACACAGTaGAAGGCTGGTATACATTTCAGAGTCAATGGCATACATAAGGCT +
Preference number: 1 (lower is better)
Translates to: SSSSGSVDLYTHGTQ*KAGIHFRVNGIHKA
Trigger: AGCCTTATGTATGCCATTGACTCTGAAATGTATACCAGCCTTTCACTGTGTACCGTGTGTATATAAATCCACAGAACCGGATGAGCTGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR GCA 90 bp AATCTGAAAGTTGTGGACTACGTGGAGACTTCTCAGAAATACAACTaGTTGCAACAGGAGGATCAGACAGATCATCTTTCACATCAGTCT +
Preference number: 1 (lower is better)
Translates to: NLKVVDYVETSQKYN*LQQEDQTDHLSHQS
Trigger: AGACTGATGTGAAAGATGATCTGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTCTGAGAAGTCTCCACGTAGTCCACAACTTTCAGATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
3UTR TCA 90 bp TTTTATTTGAATTCTCAGCAATATTCACAGAATCATCACTCTCCTTaGAATACTTTCTTCCTACTTCACTGGCCTCAGTCTCCTTTGCTA +
Preference number: 1 (lower is better)
Translates to: FYLNSQQYSQNHHSP*NTFFLLHWPQSPLL
Trigger: TAGCAAAGGAGACTGAGGCCAGTGAAGTAGGAAGAAAGTATTTCAAGGAGAGTGATGATTCTGTGAATATTGCTGAGAATTCAAATAAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp AACAGTGCACAGGAGGGCCCCTGGCCCAGGATGAGCCCTCAGAACCTTTTAGAGGGTGTGGGACGGTCCTaGAAGGAGATGATGGGAAGG +
Preference number: 2 (lower is better)
Translates to: NSAQEGPWPRMSPQNLLEGVGRS*KEMMGR
Trigger: CCTTCCCATCATCTCCTTTCAGGACCGTCCCACACC...CTCTAAAAGGTTCTGAGGGCTCATCCTGGGCCAGGGGCCCTCCTGTGCACTGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp AGCTGGCTGGCAGCAATGTCTCTCTGGCCAGAAGGTCAGGGGCGGCCTCATCTGAGGGGCGGCCTCATCTaGGTAGCAAACACCTTTATA +
Preference number: 2 (lower is better)
Translates to: SWLAAMSLWPEGQGRPHLRGGLI*VANTFI
Trigger: TATAAAGGTGTTTGCTACTCAGATGAGGCCGCCCCT...CAGATGAGGCCGCCCCTGACCTTCTGGCCAGAGAGACATTGCTGCCAGCCAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
ENST00000462482.1
3UTR-3UTR CCA 90 bp TCAGTCTCCTTTGCTAGATTACTCTGCCCCTTTCCATCCTCTAAAGTTGGGAGAGCACAGGAGGGCCCCTaGCCCAGGATGAGCCCTCAG +
Preference number: 2 (lower is better)
Translates to: SVSFARLLCPFPSSKVGRAQEGP*PRMSPQ
Trigger: CTGAGGGCTCATCCTGGGCCAGGGGCCCTCCTGTGC...TCTCCCAACTTTAGAGGATGGAAAGGGGCAGAGTAATCTAGCAAAGGAGACTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp GTTGAGACCTGTCTCTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGCTGCAGAGTGGAGCGTaGGAGGTCAGCTGCCATGTG +
Preference number: 2 (lower is better)
Translates to: VETCLYLQWSQYIVTQAWLQSGA*EVSCHV
Trigger: CACATGGCAGCTGACCTCTCACGCTCCACTCTGCAG...CCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAGGTCTCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp AGCTGGCTGGCAGCAATGTCTCTCTGGCCAGAAGGTCAGGGGCGGCCTCATCTGATAATCCTTAAAGAGTaGATGACTGGGCTACATGTC +
Preference number: 2 (lower is better)
Translates to: SWLAAMSLWPEGQGRPHLIILKE*MTGLHV
Trigger: GACATGTAGCCCAGTCATTCACTCTTTAAGGATTAT...CAGATGAGGCCGCCCCTGACCTTCTGGCCAGAGAGACATTGCTGCCAGCCAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
ENST00000462482.1
3UTR-3UTR TCA 90 bp TGGCTGGCAGCAATGTCTCTCTGGCCAGAAGGTCAGGGGCGGCCTCATCTGAGTATAATCCTTAAAGAGTaGATGACTGGGCTACATGTC +
Preference number: 2 (lower is better)
Translates to: WLAAMSLWPEGQGRPHLSIILKE*MTGLHV
Trigger: GACATGTAGCCCAGTCATTCACTCTTTAAGGATTAT...ACTCAGATGAGGCCGCCCCTGACCTTCTGGCCAGAGAGACATTGCTGCCAGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
ENST00000462482.1
3UTR-3UTR CCA 90 bp ACCTGTCTCTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAATCTGCAGCAATGTCTCTCTaGCCAGAAGGTCAGGGGCGG +
Preference number: 2 (lower is better)
Translates to: TCLYLQWSQYIVTQAWKSAAMSL*PEGQGR
Trigger: CCGCCCCTGACCTTCTGGCCAGAGAGACATTGCTGC...AGATTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR CCA 90 bp CTGGCCTCAGTCTCCTTTGCTAGATTACTCTGCCCCTTTCCATCCTCTAAAGTTGTCCAAGCTGCAGAGTaGAGCGTGAGAGGTCAGCTG +
Preference number: 2 (lower is better)
Translates to: LASVSFARLLCPFPSSKVVQAAE*SVRGQL
Trigger: CAGCTGACCTCTCACGCTCCACTCTGCAGCTTGGAC...AACTTTAGAGGATGGAAAGGGGCAGAGTAATCTAGCAAAGGAGACTGAGGCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR CCA 90 bp TTTCCATCCTCTAAAGTTGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTGGCAGCAATGTCTCTCTaGCCAGAAGGTCAGGGGCGG +
Preference number: 2 (lower is better)
Translates to: FPSSKVGRTPGFGPWYTLAAMSL*PEGQGR
Trigger: CCGCCCCTGACCTTCTGGCCAGAGAGACATTGCTGC...CAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCAACTTTAGAGGATGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR CCA 90 bp TACTTAAATCAGAAGGATCGTAGGCCTGATAAGCAGGTCAACCTGAAGCTACCAGTCCAAGCTGCAGAGTaGAGCGTGAGAGGTCAGCTG +
Preference number: 2 (lower is better)
Translates to: YLNQKDRRPDKQVNLKLPVQAAE*SVRGQL
Trigger: CAGCTGACCTCTCACGCTCCACTCTGCAGCTTGGAC...TGGTAGCTTCAGGTTGACCTGCTTATCAGGCCTACGATCCTTCTGATTTAAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp CTGTCTCTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAATCTCCAGAGGCAGGGCAATGTaGATGTTAAAATCGGTCCAG +
Preference number: 2 (lower is better)
Translates to: LSLPPMVTVYSYPGLEISRGRAM*MLKSVQ
Trigger: CTGGACCGATTTTAACATTCACATTGCCCTGCCTCT...GGAGATTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp ACTGGTGTTCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAGAGGCAGGGCAATGTaGATGTTAAAATCGGTCCAG +
Preference number: 2 (lower is better)
Translates to: TGVPVVCKQQLHLQTALSRGRAM*MLKSVQ
Trigger: CTGGACCGATTTTAACATTCACATTGCCCTGCCTCT...GCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGAACACCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp TCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAAGTAAAATTTCCAACTGCTGGATaGTGGGGCTGGGAGTGGCAA +
Preference number: 2 (lower is better)
Translates to: SCCLQTATASSDSTEQVKFPTAG*WGWEWQ
Trigger: TTGCCACTCCCAGCCCCATCATCCAGCAGTTGGAAA...TTTTACTTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000298260.8
3UTR CAA 90 bp CAATTACGGGCTCTTCCTTATAGTTGTTCACTGCCTGTGGAGGGTTaGGTAGAACTTGGGATACGATGTACCGCTCAAGTCCAAAATCTG +
Preference number: 2 (lower is better)
Translates to: QLRALPYSCSLPVEG*VELGIRCTAQVQNL
Trigger: CAGATTTTGGACTTGAGCGGTACATCGTATCCCAAGTTCTACCAAACCCTCCACAGGCAGTGAACAACTATAAGGAAGAGCCCGTAATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
3UTR-3UTR TCA 90 bp CACAGTATGCTAGGTCCTTATTTTCTCATTGGCTGTAATTTGACAAGTTCTCCAGGTGTGGGACGGTCCTaGAAGGAGATGATGGGAAGG +
Preference number: 2 (lower is better)
Translates to: HSMLGPYFLIGCNLTSSPGVGRS*KEMMGR
Trigger: CCTTCCCATCATCTCCTTTCAGGACCGTCCCACACC...TGGAGAACTTGTCAAATTACAGCCAATGAGAAAATAAGGACCTAGCATACTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp TCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAAGTAAAACCTGGTTCCAACTGTTaGGACCTGTCTCTACCTCCA +
Preference number: 2 (lower is better)
Translates to: SCCLQTATASSDSTEQVKPGSNC*DLSLPP
Trigger: TGGAGGTAGAGACAGGTCTCAACAGTTGGAACCAGG...TTTTACTTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp ATGCTAGGTCCTTATTTTCTCATTGGCTGTAATTTGACAAGTTCTCCAAAAGCACTGCAGAGTGGAGCGTaGGAGGTCAGCTGCCATGTG +
Preference number: 2 (lower is better)
Translates to: MLGPYFLIGCNLTSSPKALQSGA*EVSCHV
Trigger: CACATGGCAGCTGACCTCTCACGCTCCACTCTGCAG...TGCTTTTGGAGAACTTGTCAAATTACAGCCAATGAGAAAATAAGGACCTAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp AAATACTTTCTTCCTACTTCACTGGCCTCAGTCTCCTTTGCTAGATTACTCTGCATAAGCAGGTCAACCTaGAGCTACCAGGCAGCTCTG +
Preference number: 2 (lower is better)
Translates to: KYFLPTSLASVSFARLLCISRST*SYQAAL
Trigger: CAGAGCTGCCTGGTAGCTTCAGGTTGACCTGCTTAT...GCAGAGTAATCTAGCAAAGGAGACTGAGGCCAGTGAAGTAGGAAGAAAGTATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp CTGGCCTCAGTCTCCTTTGCTAGATTACTCTGCCCCTTTCCATCCTCTAAAGTTACACACGGTACACAGTaGAAGGCTGGTATACATTTC +
Preference number: 2 (lower is better)
Translates to: LASVSFARLLCPFPSSKVTHGTQ*KAGIHF
Trigger: GAAATGTATACCAGCCTTTCACTGTGTACCGTGTGT...AACTTTAGAGGATGGAAAGGGGCAGAGTAATCTAGCAAAGGAGACTGAGGCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp GGTGTTCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAAGACACACGGTACACAGTaGAAGGCTGGTATACATTTC +
Preference number: 2 (lower is better)
Translates to: GVPVVCKQQLHLQTALSKTHGTQ*KAGIHF
Trigger: GAAATGTATACCAGCCTTTCACTGTGTACCGTGTGT...CTTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGAACACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp TCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAAGTAAAAAGGGGCGGCCTCATCTaGGTAGCAAACACCTTTATA +
Preference number: 2 (lower is better)
Translates to: SCCLQTATASSDSTEQVKRGGLI*VANTFI
Trigger: TATAAAGGTGTTTGCTACTCAGATGAGGCCGCCCCT...TTTTACTTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp GCCTCAGTCTCCTTTGCTAGATTACTCTGCCCCTTTCCATCCTCTAAAGTTGGGTCATTGGCTGTAATTTaGCAAGTTCTCCAAAAGCAC +
Preference number: 2 (lower is better)
Translates to: ASVSFARLLCPFPSSKVGSLAVI*QVLQKH
Trigger: GTGCTTTTGGAGAACTTGTCAAATTACAGCCAATGA...CCCAACTTTAGAGGATGGAAAGGGGCAGAGTAATCTAGCAAAGGAGACTGAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR GCA 90 bp CTGTCTCTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAATCTCCAGAAATACAACTGCTTaGAACAGGAGGATCAGACAG +
Preference number: 2 (lower is better)
Translates to: LSLPPMVTVYSYPGLEISRNTTA*NRRIRQ
Trigger: CTGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTCT...GGAGATTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298260.8
3UTR-3UTR CCA 90 bp AATCAGAAGGATCGTAGGCCTGATAAGCAGGTCAACCTGAAGCTACCAGGCAGCACTTGTCCTACTTCCTaGTACTACTTAAACCATTCT +
Preference number: 2 (lower is better)
Translates to: NQKDRRPDKQVNLKLPGSTCPTS*YYLNHS
Trigger: AGAATGGTTTAAGTAGTACCAGGAAGTAGGACAAGT...GCTGCCTGGTAGCTTCAGGTTGACCTGCTTATCAGGCCTACGATCCTTCTGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR CCA 90 bp GCCTCAGTCTCCTTTGCTAGATTACTCTGCCCCTTTCCATCCTCTAAAGTTGGGTGTCTCTACCTCCAATaGTCACAGTATATAGTTACC +
Preference number: 2 (lower is better)
Translates to: ASVSFARLLCPFPSSKVGCLYLQ*SQYIVT
Trigger: GGTAACTATATACTGTGACCATTGGAGGTAGAGACA...CCCAACTTTAGAGGATGGAAAGGGGCAGAGTAATCTAGCAAAGGAGACTGAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR CCA 90 bp GCCTCAGTCTCCTTTGCTAGATTACTCTGCCCCTTTCCATCCTCTAAAGTTGGGGTACCAAAGGAGAGTTaGTATATTCGGCATCACTTT +
Preference number: 2 (lower is better)
Translates to: ASVSFARLLCPFPSSKVGVPKES*YIRHHF
Trigger: AAAGTGATGCCGAATATACCAACTCTCCTTTGGTAC...CCCAACTTTAGAGGATGGAAAGGGGCAGAGTAATCTAGCAAAGGAGACTGAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000298260.8
3UTR-3UTR TCA 90 bp CAATTACGGGCTCTTCCTTATAGTTGTTCACTGCCTGTGGAGGGTTTGGTAGAATCCTTAAAGAGTGAATaGCTGGGCTACATGTCAACA +
Preference number: 2 (lower is better)
Translates to: QLRALPYSCSLPVEGLVESLKSE*LGYMST
Trigger: TGTTGACATGTAGCCCAGTCATTCACTCTTTAAGGA...TTCTACCAAACCCTCCACAGGCAGTGAACAACTATAAGGAAGAGCCCGTAATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298260.8
3UTR-3UTR TCA 90 bp AAATACTTTCTTCCTACTTCACTGGCCTCAGTCTCCTTTGCTAGATTACTCTGCATCTTCAGACAGCACTaGGCAAGTAAAAGGTGTGGG +
Preference number: 2 (lower is better)
Translates to: KYFLPTSLASVSFARLLCIFRQH*ASKRCG
Trigger: CCCACACCTTTTACTTGCTCAGTGCTGTCTGAAGAT...GCAGAGTAATCTAGCAAAGGAGACTGAGGCCAGTGAAGTAGGAAGAAAGTATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp CACAGTATGCTAGGTCCTTATTTTCTCATTGGCTGTAATTTGACAAGTTCTCCACCTGGTTCCAACTGTTaGGACCTGTCTCTACCTCCA +
Preference number: 2 (lower is better)
Translates to: HSMLGPYFLIGCNLTSSPPGSNC*DLSLPP
Trigger: TGGAGGTAGAGACAGGTCTCAACAGTTGGAACCAGG...TGGAGAACTTGTCAAATTACAGCCAATGAGAAAATAAGGACCTAGCATACTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp TCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAAGTAAAAACAAAACTCTCAACCTaGCAGCAGAGTTCCTGGTTC +
Preference number: 2 (lower is better)
Translates to: SCCLQTATASSDSTEQVKTKLST*QQSSWF
Trigger: GAACCAGGAACTCTGCTGTCAGGTTGAGAGTTTTGT...TTTTACTTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp TGGACTACGTGGAGACTTCTCAGAAATACAACTGCTTGCAACAGGAGGATCAGATTCTTGCTCGTGTACTaGATTTTTCTTGACACGTGG +
Preference number: 2 (lower is better)
Translates to: WTTWRLLRNTTACNRRIRFLLVY*IFLDTW
Trigger: CCACGTGTCAAGAAAAATTCAGTACACGAGCAAGAA...TCTGATCCTCCTGTTGCAAGCAGTTGTATTTCTGAGAAGTCTCCACGTAGTCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
3UTR-3UTR TCA 90 bp TCAGTCTCCTTTGCTAGATTACTCTGCCCCTTTCCATCCTCTAAAGTTGGGAGAAGTTTTCTTTGTTGCTaGCATCTCGGATGTTCTGTC +
Preference number: 2 (lower is better)
Translates to: SVSFARLLCPFPSSKVGRSFLCC*HLGCSV
Trigger: GACAGAACATCCGAGATGTCAGCAACAAAGAAAACT...TCTCCCAACTTTAGAGGATGGAAAGGGGCAGAGTAATCTAGCAAAGGAGACTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000298260.8
3UTR-3UTR CCA 90 bp TTTCCATCCTCTAAAGTTGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTGATAGTTACCCAGGCCTaGAAATCTCCCTCTTTTCCT +
Preference number: 2 (lower is better)
Translates to: FPSSKVGRTPGFGPWYTLIVTQA*KSPSFP
Trigger: AGGAAAAGAGGGAGATTTCCAGGCCTGGGTAACTAT...CAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCAACTTTAGAGGATGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR CCA 90 bp GTTGAGACCTGTCTCTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGTACACAGTGAAAGGCTaGTATACATTTCAGAGTCAA +
Preference number: 2 (lower is better)
Translates to: VETCLYLQWSQYIVTQAWYTVKG*YTFQSQ
Trigger: TTGACTCTGAAATGTATACCAGCCTTTCACTGTGTA...CCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAGGTCTCAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp TGGACTACGTGGAGACTTCTCAGAAATACAACTGCTTGCAACAGGAGGATCAGAATAATCCTTAAAGAGTaGATGACTGGGCTACATGTC +
Preference number: 2 (lower is better)
Translates to: WTTWRLLRNTTACNRRIRIILKE*MTGLHV
Trigger: GACATGTAGCCCAGTCATTCACTCTTTAAGGATTAT...TCTGATCCTCCTGTTGCAAGCAGTTGTATTTCTGAGAAGTCTCCACGTAGTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298260.8
3UTR-3UTR TCA 90 bp TTTCCATCCTCTAAAGTTGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTGTGTGATAGAAAGAGCTaGCATAAGAGAAAAGACCCC +
Preference number: 2 (lower is better)
Translates to: FPSSKVGRTPGFGPWYTLCDRKS*HKRKDP
Trigger: GGGGTCTTTTCTCTTATGTCAGCTCTTTCTATCACA...CAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCAACTTTAGAGGATGGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR GCA 90 bp TACTTAAATCAGAAGGATCGTAGGCCTGATAAGCAGGTCAACCTGAAGCTACCAGGTGTTCCTGTTGTTTaGAAACAGCAACTGCATCTT +
Preference number: 2 (lower is better)
Translates to: YLNQKDRRPDKQVNLKLPGVPVV*KQQLHL
Trigger: AAGATGCAGTTGCTGTTTGCAAACAACAGGAACACC...TGGTAGCTTCAGGTTGACCTGCTTATCAGGCCTACGATCCTTCTGATTTAAGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR GCA 90 bp TGGGGTTACAATTACGGGCTCTTCCTTATAGTTGTTCACTGCCTGTGGAGGGTTGAGTTAATGGCTTCTTaGTCGTGTACTGAATTTTTC +
Preference number: 2 (lower is better)
Translates to: WGYNYGLFLIVVHCLWRVELMAS*SCTEFF
Trigger: GAAAAATTCAGTACACGAGCAAGAAGCCATTAACTC...AACCCTCCACAGGCAGTGAACAACTATAAGGAAGAGCCCGTAATTGTAACCCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
3UTR-3UTR CCA 90 bp ACTACGTGGAGACTTCTCAGAAATACAACTGCTTGCAACAGGAGGATCAGACAGACAATTAGACAACTCTaGGTCAGAGTTAATGGCTTC +
Preference number: 2 (lower is better)
Translates to: TTWRLLRNTTACNRRIRQTIRQL*VRVNGF
Trigger: GAAGCCATTAACTCTGACCCAGAGTTGTCTAATTGT...CTGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTCTGAGAAGTCTCCACGTAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
3UTR-3UTR CCA 90 bp GGAGGGTTTGGTAGAACTTGGGATACGATGTACCGCTCAAGTCCAAAATCTGAAAAGTTGTGGACTACGTaGAGACTTCTCAGAAATACA +
Preference number: 2 (lower is better)
Translates to: GGFGRTWDTMYRSSPKSEKLWTT*RLLRNT
Trigger: TGTATTTCTGAGAAGTCTCCACGTAGTCCACAACTT...TTCAGATTTTGGACTTGAGCGGTACATCGTATCCCAAGTTCTACCAAACCCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
3UTR-3UTR TCA 90 bp AACAGGGTAATCTTTACTGCATCAAATTCCCAAAACTACGCCTTTGAAGTAAGTAGGGGCGGCCTCATCTaGGTAGCAAACACCTTTATA +
Preference number: 2 (lower is better)
Translates to: NRVIFTASNSQNYAFEVSRGGLI*VANTFI
Trigger: TATAAAGGTGTTTGCTACTCAGATGAGGCCGCCCCT...ACTTACTTCAAAGGCGTAGTTTTGGGAATTTGATGCAGTAAAGATTACCCTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR GCA 90 bp TGGTGTTCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAAGAGTTAATGGCTTCTTaGTCGTGTACTGAATTTTTC +
Preference number: 2 (lower is better)
Translates to: WCSCCLQTATASSDSTEQELMAS*SCTEFF
Trigger: GAAAAATTCAGTACACGAGCAAGAAGCCATTAACTC...TTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGAACACCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000298260.8
3UTR-3UTR CCA 90 bp GGTGACAGTTTTCTGACAAGATTAATAGAGCACAATGGACAGGTCCCCCATTTGACAATTAGACAACTCTaGGTCAGAGTTAATGGCTTC +
Preference number: 2 (lower is better)
Translates to: GDSFLTRLIEHNGQVPHLTIRQL*VRVNGF
Trigger: GAAGCCATTAACTCTGACCCAGAGTTGTCTAATTGT...CAAATGGGGGACCTGTCCATTGTGCTCTATTAATCTTGTCAGAAAACTGTCACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000298260.8
3UTR-3UTR TCA 90 bp ATGCTAGGTCCTTATTTTCTCATTGGCTGTAATTTGACAAGTTCTCCAAAAGCAAGAGGCAGGGCAATGTaGATGTTAAAATCGGTCCAG +
Preference number: 2 (lower is better)
Translates to: MLGPYFLIGCNLTSSPKARGRAM*MLKSVQ
Trigger: CTGGACCGATTTTAACATTCACATTGCCCTGCCTCT...TGCTTTTGGAGAACTTGTCAAATTACAGCCAATGAGAAAATAAGGACCTAGCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp AAATACTTTCTTCCTACTTCACTGGCCTCAGTCTCCTTTGCTAGATTACTCTGCATAATCCTTAAAGAGTaGATGACTGGGCTACATGTC +
Preference number: 2 (lower is better)
Translates to: KYFLPTSLASVSFARLLCIILKE*MTGLHV
Trigger: GACATGTAGCCCAGTCATTCACTCTTTAAGGATTAT...GCAGAGTAATCTAGCAAAGGAGACTGAGGCCAGTGAAGTAGGAAGAAAGTATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp AACAGGGTAATCTTTACTGCATCAAATTCCCAAAACTACGCCTTTGAAGTAAGTATCTTCAGACAGCACTaGGCAAGTAAAAGGTGTGGG +
Preference number: 2 (lower is better)
Translates to: NRVIFTASNSQNYAFEVSIFRQH*ASKRCG
Trigger: CCCACACCTTTTACTTGCTCAGTGCTGTCTGAAGAT...ACTTACTTCAAAGGCGTAGTTTTGGGAATTTGATGCAGTAAAGATTACCCTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR CCA 90 bp AGTTGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTGAATATATTCCCTCCACTTGTCCTACTTCCTaGTACTACTTAAACCATTCT +
Preference number: 2 (lower is better)
Translates to: SWENSRIWSLVHFEYIPSTCPTS*YYLNHS
Trigger: AGAATGGTTTAAGTAGTACCAGGAAGTAGGACAAGT...GGAGGGAATATATTCAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCAACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR CCA 90 bp AACAGGGTAATCTTTACTGCATCAAATTCCCAAAACTACGCCTTTGAAGTAAGTGGGTTTGGTAGAACTTaGGATACGATGTACCGCTCA +
Preference number: 2 (lower is better)
Translates to: NRVIFTASNSQNYAFEVSGFGRT*DTMYRS
Trigger: TGAGCGGTACATCGTATCCCAAGTTCTACCAAACCC...ACTTACTTCAAAGGCGTAGTTTTGGGAATTTGATGCAGTAAAGATTACCCTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298260.8
3UTR-3UTR TCA 90 bp CACAGTATGCTAGGTCCTTATTTTCTCATTGGCTGTAATTTGACAAGTTCTCCATCCTTAAAGAGTGAATaGCTGGGCTACATGTCAACA +
Preference number: 2 (lower is better)
Translates to: HSMLGPYFLIGCNLTSSPSLKSE*LGYMST
Trigger: TGTTGACATGTAGCCCAGTCATTCACTCTTTAAGGA...TGGAGAACTTGTCAAATTACAGCCAATGAGAAAATAAGGACCTAGCATACTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp AGTACTTTTACTAGTGATTGTTTGGTAGGTGGGGTTACAATTACGGGCTCTTCCGTACTGAATTTTTCTTaGCACGTGGACTATATCCAT +
Preference number: 2 (lower is better)
Translates to: STFTSDCLVGGVTITGSSVLNFS*HVDYIH
Trigger: ATGGATATAGTCCACGTGTCAAGAAAAATTCAGTAC...GGAAGAGCCCGTAATTGTAACCCCACCTACCAAACAATCACTAGTAAAAGTACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
3UTR-3UTR CCA 90 bp TCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAAGTAAAAACTTGTCCTACTTCCTaGTACTACTTAAACCATTCT +
Preference number: 2 (lower is better)
Translates to: SCCLQTATASSDSTEQVKTCPTS*YYLNHS
Trigger: AGAATGGTTTAAGTAGTACCAGGAAGTAGGACAAGT...TTTTACTTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp ATGCTAGGTCCTTATTTTCTCATTGGCTGTAATTTGACAAGTTCTCCAAAAGCATGTGATAGAAAGAGCTaGCATAAGAGAAAAGACCCC +
Preference number: 2 (lower is better)
Translates to: MLGPYFLIGCNLTSSPKACDRKS*HKRKDP
Trigger: GGGGTCTTTTCTCTTATGTCAGCTCTTTCTATCACA...TGCTTTTGGAGAACTTGTCAAATTACAGCCAATGAGAAAATAAGGACCTAGCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR TCA 90 bp ATGCTAGGTCCTTATTTTCTCATTGGCTGTAATTTGACAAGTTCTCCAAAAGCATTCTTGCTCGTGTACTaGATTTTTCTTGACACGTGG +
Preference number: 2 (lower is better)
Translates to: MLGPYFLIGCNLTSSPKAFLLVY*IFLDTW
Trigger: CCACGTGTCAAGAAAAATTCAGTACACGAGCAAGAA...TGCTTTTGGAGAACTTGTCAAATTACAGCCAATGAGAAAATAAGGACCTAGCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000298260.8
3UTR-3UTR TCA 90 bp AATGTGAATGTTAAAATCGGTCCAGCTCGGCTTTCATCTCATTTTGTTCAGTTTAGTTTTCTTTGTTGCTaGCATCTCGGATGTTCTGTC +
Preference number: 2 (lower is better)
Translates to: NVNVKIGPARLSSHFVQFSFLCC*HLGCSV
Trigger: GACAGAACATCCGAGATGTCAGCAACAAAGAAAACT...AAACTGAACAAAATGAGATGAAAGCCGAGCTGGACCGATTTTAACATTCACATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000462482.1
3UTR-3UTR TCA 90 bp CAAAGCATGTGTCTGAATTTAAAACCAACGAAGTACGATCTTCAACTTCCAAATTGTGATAGAAAGAGCTaGCATAAGAGAAAAGACCCC +
Preference number: 2 (lower is better)
Translates to: QSMCLNLKPTKYDLQLPNCDRKS*HKRKDP
Trigger: GGGGTCTTTTCTCTTATGTCAGCTCTTTCTATCACA...ATTTGGAAGTTGAAGATCGTACTTCGTTGGTTTTAAATTCAGACACATGCTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000298260.8
3UTR-3UTR CCA 90 bp AATCTGAAAGTTGTGGACTACGTGGAGACTTCTCAGAAATACAACTGCTTGCAAATTTTTCTTGACACGTaGACTATATCCATACTTCTG +
Preference number: 2 (lower is better)
Translates to: NLKVVDYVETSQKYNCLQIFLDT*TISILL
Trigger: CAGAAGTATGGATATAGTCCACGTGTCAAGAAAAAT...TTGCAAGCAGTTGTATTTCTGAGAAGTCTCCACGTAGTCCACAACTTTCAGATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
3UTR CAA 90 bp TTTTTATTTGAATTCTCAGCAATATTCACAGAATCATCACTCTCCTaGAAATACTTTCTTCCTACTTCACTGGCCTCAGTCTCCTTTGCT +
Preference number: 2 (lower is better)
Translates to: FLFEFSAIFTESSLS*KYFLPTSLASVSFA
Trigger: AGCAAAGGAGACTGAGGCCAGTGAAGTAGGAAGAAAGTATTTCAAGGAGAGTGATGATTCTGTGAATATTGCTGAGAATTCAAATAAAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR CCA 90 bp AACATTATCATTGAGCCTGGATTCTGTATCTATGGCCTCCTCACTTTTATTATTAAGTTGTGGACTACGTaGAGACTTCTCAGAAATACA +
Preference number: 2 (lower is better)
Translates to: NIIIEPGFCIYGLLTFIIKLWTT*RLLRNT
Trigger: TGTATTTCTGAGAAGTCTCCACGTAGTCCACAACTT...AATAATAAAAGTGAGGAGGCCATAGATACAGAATCCAGGCTCAATGATAATGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
3UTR-3UTR CCA 90 bp ATGCTAGGTCCTTATTTTCTCATTGGCTGTAATTTGACAAGTTCTCCAAAAGCAGTTCAGTTTCTGTGTTaGATAGATCCACTGGAATTT +
Preference number: 2 (lower is better)
Translates to: MLGPYFLIGCNLTSSPKAVQFLC*IDPLEF
Trigger: AAATTCCAGTGGATCTATCCAACACAGAAACTGAAC...TGCTTTTGGAGAACTTGTCAAATTACAGCCAATGAGAAAATAAGGACCTAGCAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000298260.8
3UTR-3UTR TCA 90 bp AACATTATCATTGAGCCTGGATTCTGTATCTATGGCCTCCTCACTTTTATTATTGTACTGAATTTTTCTTaGCACGTGGACTATATCCAT +
Preference number: 2 (lower is better)
Translates to: NIIIEPGFCIYGLLTFIIVLNFS*HVDYIH
Trigger: ATGGATATAGTCCACGTGTCAAGAAAAATTCAGTAC...AATAATAAAAGTGAGGAGGCCATAGATACAGAATCCAGGCTCAATGATAATGTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
3UTR-3UTR GCA 90 bp AATGTGAATGTTAAAATCGGTCCAGCTCGGCTTTCATCTCATTTTGTTCAGTTTCAGGGTAATCTTTACTaGATCAAATTCCCAAAACTA +
Preference number: 2 (lower is better)
Translates to: NVNVKIGPARLSSHFVQFQGNLY*IKFPKL
Trigger: TAGTTTTGGGAATTTGATGCAGTAAAGATTACCCTG...AAACTGAACAAAATGAGATGAAAGCCGAGCTGGACCGATTTTAACATTCACATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000314759.6
3UTR-3UTR CCA 90 bp AACATTATCATTGAGCCTGGATTCTGTATCTATGGCCTCCTCACTTTTATTATTATTTTTCTTGACACGTaGACTATATCCATACTTCTG +
Preference number: 2 (lower is better)
Translates to: NIIIEPGFCIYGLLTFIIIFLDT*TISILL
Trigger: CAGAAGTATGGATATAGTCCACGTGTCAAGAAAAAT...AATAATAAAAGTGAGGAGGCCATAGATACAGAATCCAGGCTCAATGATAATGTT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
3UTR CCA 72 bp ATGGGAAGGCAGAGCTGGCTGGCAGCAATGTCTCTCTaGCCAGAAGGTCAGGGGCGGCCTCATCTGAGTAGC +
Preference number: 3 (lower is better)
Translates to: MGRQSWLAAMSL*PEGQGRPHLSS
Trigger: GCTACTCAGATGAGGCCGCCCCTGACCTTCTGGCCAGAGAGACATTGCTGCCAGCCAGCTCTGCCTTCCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
ENST00000462482.1
3UTR CCA 72 bp CCCGTGGCCATAGCTAACAGTGCACAGGAGGGCCCCTaGCCCAGGATGAGCCCTCAGAACCTTTTAGAGAGA +
Preference number: 3 (lower is better)
Translates to: PVAIANSAQEGP*PRMSPQNLLER
Trigger: TCTCTCTAAAAGGTTCTGAGGGCTCATCCTGGGCCAGGGGCCCTCCTGTGCACTGTTAGCTATGGCCACGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR CCA 72 bp GAAATTCAGGGTCTACTGGGTGTCCAAGCTGCAGAGTaGAGCGTGAGAGGTCAGCTGCCATGTGATAGAAAG +
Preference number: 3 (lower is better)
Translates to: EIQGLLGVQAAE*SVRGQLPCDRK
Trigger: CTTTCTATCACATGGCAGCTGACCTCTCACGCTCCACTCTGCAGCTTGGACACCCAGTAGACCCTGAATTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR CAA 90 bp TGGCTGGCAGCAATGTCTCTCTGGCCAGAAGGTCAGGGGCGGCCTCATCTGAGTTGTTCAGTTTCTGTGTaGGATAGATCCACTGGAATT +
Preference number: 3 (lower is better)
Translates to: WLAAMSLWPEGQGRPHLSCSVSV*DRSTGI
Trigger: AATTCCAGTGGATCTATCCAACACAGAAACTGAACA...ACTCAGATGAGGCCGCCCCTGACCTTCTGGCCAGAGAGACATTGCTGCCAGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000462482.1
3UTR-3UTR CAA 90 bp GCTGGGAGTGGCAAAAACATTATCATTGAGCCTGGATTCTGTATCTATGGCCTCTCCTGGTTCCAACTGTaGAGACCTGTCTCTACCTCC +
Preference number: 3 (lower is better)
Translates to: AGSGKNIIIEPGFCIYGLSWFQL*RPVSTS
Trigger: GGAGGTAGAGACAGGTCTCAACAGTTGGAACCAGGA...GAGGCCATAGATACAGAATCCAGGCTCAATGATAATGTTTTTGCCACTCCCAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000298260.8
3UTR GCA 72 bp ACTTCACTGGCCTCAGTCTCCTTTGCTAGATTACTCTaGCCCTTTCCATCCTCTAAAGTTGGGAGAACTCCA +
Preference number: 3 (lower is better)
Translates to: TSLASVSFARLL*PFPSSKVGRTP
Trigger: TGGAGTTCTCCCAACTTTAGAGGATGGAAAGGGGCAGAGTAATCTAGCAAAGGAGACTGAGGCCAGTGAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR CAA 90 bp TCAGTCTCCTTTGCTAGATTACTCTGCCCCTTTCCATCCTCTAAAGTTGGGAGAGGACAGGTCCCCCATTaGACTTTCAAGGAACAATCA +
Preference number: 3 (lower is better)
Translates to: SVSFARLLCPFPSSKVGRGQVPH*TFKEQS
Trigger: TGATTGTTCCTTGAAAGTCAAATGGGGGACCTGTCC...TCTCCCAACTTTAGAGGATGGAAAGGGGCAGAGTAATCTAGCAAAGGAGACTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR CAA 90 bp CTGGCCTCAGTCTCCTTTGCTAGATTACTCTGCCCCTTTCCATCCTCTAAAGTTGGTACCAAAGGAGAGTaGGTATATTCGGCATCACTT +
Preference number: 3 (lower is better)
Translates to: LASVSFARLLCPFPSSKVGTKGE*VYSASL
Trigger: AAGTGATGCCGAATATACCAACTCTCCTTTGGTACC...AACTTTAGAGGATGGAAAGGGGCAGAGTAATCTAGCAAAGGAGACTGAGGCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298260.8
3UTR TCA 72 bp TCTCAACCTGACAGCAGAGTTCCTGGTTCCAACTGTTaGGACCTGTCTCTACCTCCAATGGTCACAGTATAT +
Preference number: 3 (lower is better)
Translates to: SQPDSRVPGSNC*DLSLPPMVTVY
Trigger: ATATACTGTGACCATTGGAGGTAGAGACAGGTCTCAACAGTTGGAACCAGGAACTCTGCTGTCAGGTTGAGA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR TCA 72 bp TTGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTaGATATATTCCCTCCCTAAGCAGCTCATCCGGTTC +
Preference number: 3 (lower is better)
Translates to: LGELQDLVLGTL*IYSLPKQLIRF
Trigger: GAACCGGATGAGCTGCTTAGGGAGGGAATATATTCAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR CCA 72 bp CTGGTTCCAACTGTTGAGACCTGTCTCTACCTCCAATaGTCACAGTATATAGTTACCCAGGCCTGGAAATCT +
Preference number: 3 (lower is better)
Translates to: LVPTVETCLYLQ*SQYIVTQAWKS
Trigger: AGATTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAGGTCTCAACAGTTGGAACCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR CAA 90 bp CTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAATCTCCCTCTTTCAGAAATACAACTGCTaGCAACAGGAGGATCAGACA +
Preference number: 3 (lower is better)
Translates to: LPPMVTVYSYPGLEISLFQKYNC*QQEDQT
Trigger: TGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTCTG...AAAGAGGGAGATTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298260.8
3UTR-3UTR CAA 90 bp TACTTAAATCAGAAGGATCGTAGGCCTGATAAGCAGGTCAACCTGAAGCTACCATGGTGTTCCTGTTGTTaGCAAACAGCAACTGCATCT +
Preference number: 3 (lower is better)
Translates to: YLNQKDRRPDKQVNLKLPWCSCC*QTATAS
Trigger: AGATGCAGTTGCTGTTTGCAAACAACAGGAACACCA...TGGTAGCTTCAGGTTGACCTGCTTATCAGGCCTACGATCCTTCTGATTTAAGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR CAA 90 bp AATCTGAAAGTTGTGGACTACGTGGAGACTTCTCAGAAATACAACTGCTTGCAACAGAAATACAACTGCTaGCAACAGGAGGATCAGACA +
Preference number: 3 (lower is better)
Translates to: NLKVVDYVETSQKYNCLQQKYNC*QQEDQT
Trigger: TGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTCTG...TTGCAAGCAGTTGTATTTCTGAGAAGTCTCCACGTAGTCCACAACTTTCAGATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
3UTR-3UTR CAA 90 bp ATGCTAGGTCCTTATTTTCTCATTGGCTGTAATTTGACAAGTTCTCCAAAAGCAGGACAGGTCCCCCATTaGACTTTCAAGGAACAATCA +
Preference number: 3 (lower is better)
Translates to: MLGPYFLIGCNLTSSPKAGQVPH*TFKEQS
Trigger: TGATTGTTCCTTGAAAGTCAAATGGGGGACCTGTCC...TGCTTTTGGAGAACTTGTCAAATTACAGCCAATGAGAAAATAAGGACCTAGCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR CAA 90 bp TTTCCATCCTCTAAAGTTGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTGTCCAGGATTTGGTCCTaGGTACACTTTGAATATATT +
Preference number: 3 (lower is better)
Translates to: FPSSKVGRTPGFGPWYTLSRIWS*VHFEYI
Trigger: AATATATTCAAAGTGTACCAAGGACCAAATCCTGGA...CAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCAACTTTAGAGGATGGAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR CAA 90 bp AGTTGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTGAATATATTCCCTCCTTTACTAGTGATTGTTaGGTAGGTGGGGTTACAATT +
Preference number: 3 (lower is better)
Translates to: SWENSRIWSLVHFEYIPSFTSDC*VGGVTI
Trigger: AATTGTAACCCCACCTACCAAACAATCACTAGTAAA...GGAGGGAATATATTCAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298260.8
3UTR-3UTR CAA 90 bp GGTATACATTTCAGAGTCAATGGCATACATAAGGCTGACTACAGCTTTACTTTGTGTTCAGTTTCTGTGTaGGATAGATCCACTGGAATT +
Preference number: 3 (lower is better)
Translates to: GIHFRVNGIHKADYSFTLCSVSV*DRSTGI
Trigger: AATTCCAGTGGATCTATCCAACACAGAAACTGAACA...CAAAGTAAAGCTGTAGTCAGCCTTATGTATGCCATTGACTCTGAAATGTATACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000314759.6
3UTR-3UTR CAA 90 bp TCCTTGAAATACTTTCTTCCTACTTCACTGGCCTCAGTCTCCTTTGCTAGATTAGCAAAAACATTATCATaGAGCCTGGATTCTGTATCT +
Preference number: 3 (lower is better)
Translates to: SLKYFLPTSLASVSFARLAKTLS*SLDSVS
Trigger: AGATACAGAATCCAGGCTCAATGATAATGTTTTTGC...TAATCTAGCAAAGGAGACTGAGGCCAGTGAAGTAGGAAGAAAGTATTTCAAGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000298260.8
3UTR TCA 72 bp AATTCTCAGCAATATTCACAGAATCATCACTCTCCTTaGAATACTTTCTTCCTACTTCACTGGCCTCAGTCT +
Preference number: 3 (lower is better)
Translates to: NSQQYSQNHHSP*NTFFLLHWPQS
Trigger: AGACTGAGGCCAGTGAAGTAGGAAGAAAGTATTTCAAGGAGAGTGATGATTCTGTGAATATTGCTGAGAATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR-3UTR CAA 90 bp AATGTGAATGTTAAAATCGGTCCAGCTCGGCTTTCATCTCATTTTGTTCAGTTTTGTTCAGTTTCTGTGTaGGATAGATCCACTGGAATT +
Preference number: 3 (lower is better)
Translates to: NVNVKIGPARLSSHFVQFCSVSV*DRSTGI
Trigger: AATTCCAGTGGATCTATCCAACACAGAAACTGAACA...AAACTGAACAAAATGAGATGAAAGCCGAGCTGGACCGATTTTAACATTCACATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000462482.1
CDS-3UTR GCA 90 bp AACAGTGCACAGGAGGGCCCCTGGCCCAGGATGAGCCCTCAGAACCTTTTAGAGCCGTCCAGCGCTCGCTaGAGCCGGGCCGTCTCGCAG +
Preference number: 4 (lower is better)
Translates to: NSAQEGPWPRMSPQNLLEPSSAR*SRAVSQ
Trigger: CTGCGAGACGGCCCGGCTGCAGCGAGCGCTGGACGG...CTCTAAAAGGTTCTGAGGGCTCATCCTGGGCCAGGGGCCCTCCTGTGCACTGTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp AGCTGGCTGGCAGCAATGTCTCTCTGGCCAGAAGGTCAGGGGCGGCCTCATCTGCGCAGTCCAGCGTGCTaGCCAGAGACCGCAGCTTCC +
Preference number: 4 (lower is better)
Translates to: SWLAAMSLWPEGQGRPHLRSPAC*PETAAS
Trigger: GGAAGCTGCGGTCTCTGGCCAGCACGCTGGACTGCG...CAGATGAGGCCGCCCCTGACCTTCTGGCCAGAGAGACATTGCTGCCAGCCAGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
ENST00000462482.1
CDS-3UTR CCA 90 bp AGCTGGCTGGCAGCAATGTCTCTCTGGCCAGAAGGTCAGGGGCGGCCTCATCTGGCAGCAATGTCTCTCTaGCCAGAAGGTCAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: SWLAAMSLWPEGQGRPHLAAMSL*PEGQGR
Trigger: CCGCCCCTGACCTTCTGGCCAGAGAGACATTGCTGC...CAGATGAGGCCGCCCCTGACCTTCTGGCCAGAGAGACATTGCTGCCAGCCAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
ENST00000462482.1
CDS-3UTR GCA 90 bp TTCCAGCTGTACTTAAATCAGAAGGATCGTAGGCCTGATAAGCAGGTCAACCTGCCGTCCAGCGCTCGCTaGAGCCGGGCCGTCTCGCAG +
Preference number: 4 (lower is better)
Translates to: FQLYLNQKDRRPDKQVNLPSSAR*SRAVSQ
Trigger: CTGCGAGACGGCCCGGCTGCAGCGAGCGCTGGACGG...CAGGTTGACCTGCTTATCAGGCCTACGATCCTTCTGATTTAAGTACAGCTGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp GCCTCAGTCTCCTTTGCTAGATTACTCTGCCCCTTTCCATCCTCTAAAGTTGGGGCACAGGAGGGCCCCTaGCCCAGGATGAGCCCTCAG +
Preference number: 4 (lower is better)
Translates to: ASVSFARLLCPFPSSKVGAQEGP*PRMSPQ
Trigger: CTGAGGGCTCATCCTGGGCCAGGGGCCCTCCTGTGC...CCCAACTTTAGAGGATGGAAAGGGGCAGAGTAATCTAGCAAAGGAGACTGAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp AGCTGGCTGGCAGCAATGTCTCTCTGGCCAGAAGGTCAGGGGCGGCCTCATCTGAGAGGCAGGGCAATGTaGATGTTAAAATCGGTCCAG +
Preference number: 4 (lower is better)
Translates to: SWLAAMSLWPEGQGRPHLRGRAM*MLKSVQ
Trigger: CTGGACCGATTTTAACATTCACATTGCCCTGCCTCT...CAGATGAGGCCGCCCCTGACCTTCTGGCCAGAGAGACATTGCTGCCAGCCAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
ENST00000462482.1
CDS-3UTR CCA 90 bp AGCTGGCTGGCAGCAATGTCTCTCTGGCCAGAAGGTCAGGGGCGGCCTCATCTGGGGTTTGGTAGAACTTaGGATACGATGTACCGCTCA +
Preference number: 4 (lower is better)
Translates to: SWLAAMSLWPEGQGRPHLGFGRT*DTMYRS
Trigger: TGAGCGGTACATCGTATCCCAAGTTCTACCAAACCC...CAGATGAGGCCGCCCCTGACCTTCTGGCCAGAGAGACATTGCTGCCAGCCAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR GCA 90 bp CTTCTCAGAAATACAACTGCTTGCAACAGGAGGATCAGACAGATCATCTTTCACCCGTCCAGCGCTCGCTaGAGCCGGGCCGTCTCGCAG +
Preference number: 4 (lower is better)
Translates to: LLRNTTACNRRIRQIIFHPSSAR*SRAVSQ
Trigger: CTGCGAGACGGCCCGGCTGCAGCGAGCGCTGGACGG...GTGAAAGATGATCTGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTCTGAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
CDS-3UTR GCA 90 bp GAGACCTGTCTCTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAATCTCGCAGTCCAGCGTaGTGGCCAGAGACCGCAGCT +
Preference number: 4 (lower is better)
Translates to: ETCLYLQWSQYIVTQAWKSRSPA*WPETAA
Trigger: AGCTGCGGTCTCTGGCCAGCACGCTGGACTGCGAGA...TTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAGGTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR GCA 90 bp AATCTGAAAGTTGTGGACTACGTGGAGACTTCTCAGAAATACAACTGCTTGCAACCGTCCAGCGCTCGCTaGAGCCGGGCCGTCTCGCAG +
Preference number: 4 (lower is better)
Translates to: NLKVVDYVETSQKYNCLQPSSAR*SRAVSQ
Trigger: CTGCGAGACGGCCCGGCTGCAGCGAGCGCTGGACGG...TTGCAAGCAGTTGTATTTCTGAGAAGTCTCCACGTAGTCCACAACTTTCAGATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
CDS-3UTR GCA 90 bp AGCTGGCTGGCAGCAATGTCTCTCTGGCCAGAAGGTCAGGGGCGGCCTCATCTGGGTGTTCCTGTTGTTTaGAAACAGCAACTGCATCTT +
Preference number: 4 (lower is better)
Translates to: SWLAAMSLWPEGQGRPHLGVPVV*KQQLHL
Trigger: AAGATGCAGTTGCTGTTTGCAAACAACAGGAACACC...CAGATGAGGCCGCCCCTGACCTTCTGGCCAGAGAGACATTGCTGCCAGCCAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp TGGACTACGTGGAGACTTCTCAGAAATACAACTGCTTGCAACAGGAGGATCAGACGCAGTCCAGCGTGCTaGCCAGAGACCGCAGCTTCC +
Preference number: 4 (lower is better)
Translates to: WTTWRLLRNTTACNRRIRRSPAC*PETAAS
Trigger: GGAAGCTGCGGTCTCTGGCCAGCACGCTGGACTGCG...TCTGATCCTCCTGTTGCAAGCAGTTGTATTTCTGAGAAGTCTCCACGTAGTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
CDS-3UTR GCA 90 bp AGCTGGCTGGCAGCAATGTCTCTCTGGCCAGAAGGTCAGGGGCGGCCTCATCTGTTTACTGGGTGGCACTaGTTTAATTGCTATTGGAGT +
Preference number: 4 (lower is better)
Translates to: SWLAAMSLWPEGQGRPHLFTGWH*FNCYWS
Trigger: ACTCCAATAGCAATTAAAGCAGTGCCACCCAGTAAA...CAGATGAGGCCGCCCCTGACCTTCTGGCCAGAGAGACATTGCTGCCAGCCAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000462482.1
CDS-3UTR GCA 90 bp GTTGAGACCTGTCTCTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGACTGGGTGTCCAAGCTaGAGAGTGGAGCGTGAGAGG +
Preference number: 4 (lower is better)
Translates to: VETCLYLQWSQYIVTQAWTGCPS*RVERER
Trigger: CCTCTCACGCTCCACTCTGCAGCTTGGACACCCAGT...CCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAGGTCTCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp TCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAAGTAAAAGCACAGGAGGGCCCCTaGCCCAGGATGAGCCCTCAG +
Preference number: 4 (lower is better)
Translates to: SCCLQTATASSDSTEQVKAQEGP*PRMSPQ
Trigger: CTGAGGGCTCATCCTGGGCCAGGGGCCCTCCTGTGC...TTTTACTTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp AGCTGGCTGGCAGCAATGTCTCTCTGGCCAGAAGGTCAGGGGCGGCCTCATCTGGTACTGAATTTTTCTTaGCACGTGGACTATATCCAT +
Preference number: 4 (lower is better)
Translates to: SWLAAMSLWPEGQGRPHLVLNFS*HVDYIH
Trigger: ATGGATATAGTCCACGTGTCAAGAAAAATTCAGTAC...CAGATGAGGCCGCCCCTGACCTTCTGGCCAGAGAGACATTGCTGCCAGCCAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp CTGGCCTCAGTCTCCTTTGCTAGATTACTCTGCCCCTTTCCATCCTCTAAAGTTGGTGTGGGACGGTCCTaGAAGGAGATGATGGGAAGG +
Preference number: 4 (lower is better)
Translates to: LASVSFARLLCPFPSSKVGVGRS*KEMMGR
Trigger: CCTTCCCATCATCTCCTTTCAGGACCGTCCCACACC...AACTTTAGAGGATGGAAAGGGGCAGAGTAATCTAGCAAAGGAGACTGAGGCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp TTCCAGCTGTACTTAAATCAGAAGGATCGTAGGCCTGATAAGCAGGTCAACCTGCTGCAGAGTGGAGCGTaGGAGGTCAGCTGCCATGTG +
Preference number: 4 (lower is better)
Translates to: FQLYLNQKDRRPDKQVNLLQSGA*EVSCHV
Trigger: CACATGGCAGCTGACCTCTCACGCTCCACTCTGCAG...CAGGTTGACCTGCTTATCAGGCCTACGATCCTTCTGATTTAAGTACAGCTGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR GCA 90 bp TACTTAAATCAGAAGGATCGTAGGCCTGATAAGCAGGTCAACCTGAAGCTACCATCTCGCAGTCCAGCGTaGTGGCCAGAGACCGCAGCT +
Preference number: 4 (lower is better)
Translates to: YLNQKDRRPDKQVNLKLPSRSPA*WPETAA
Trigger: AGCTGCGGTCTCTGGCCAGCACGCTGGACTGCGAGA...TGGTAGCTTCAGGTTGACCTGCTTATCAGGCCTACGATCCTTCTGATTTAAGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR GCA 90 bp GAGACCTGTCTCTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAAACTGGGTGTCCAAGCTaGAGAGTGGAGCGTGAGAGG +
Preference number: 4 (lower is better)
Translates to: ETCLYLQWSQYIVTQAWKTGCPS*RVERER
Trigger: CCTCTCACGCTCCACTCTGCAGCTTGGACACCCAGT...TTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAGGTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp CTGTCTCTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAATCTCCTTTCCAACTGCTGGATaGTGGGGCTGGGAGTGGCAA +
Preference number: 4 (lower is better)
Translates to: LSLPPMVTVYSYPGLEISFPTAG*WGWEWQ
Trigger: TTGCCACTCCCAGCCCCATCATCCAGCAGTTGGAAA...GGAGATTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp TTCCAGCTGTACTTAAATCAGAAGGATCGTAGGCCTGATAAGCAGGTCAACCTGGGTGTGGGACGGTCCTaGAAGGAGATGATGGGAAGG +
Preference number: 4 (lower is better)
Translates to: FQLYLNQKDRRPDKQVNLGVGRS*KEMMGR
Trigger: CCTTCCCATCATCTCCTTTCAGGACCGTCCCACACC...CAGGTTGACCTGCTTATCAGGCCTACGATCCTTCTGATTTAAGTACAGCTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp GTTGAGACCTGTCTCTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGCCTGGTTCCAACTGTTaGGACCTGTCTCTACCTCCA +
Preference number: 4 (lower is better)
Translates to: VETCLYLQWSQYIVTQAWPGSNC*DLSLPP
Trigger: TGGAGGTAGAGACAGGTCTCAACAGTTGGAACCAGG...CCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAGGTCTCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp AGTTGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTGAATATATTCCCTCCCTGCAGAGTGGAGCGTaGGAGGTCAGCTGCCATGTG +
Preference number: 4 (lower is better)
Translates to: SWENSRIWSLVHFEYIPSLQSGA*EVSCHV
Trigger: CACATGGCAGCTGACCTCTCACGCTCCACTCTGCAG...GGAGGGAATATATTCAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR GCA 90 bp ATCTCATTTTGTTCAGTTTCTGTGTTGGATAGATCCACTGGAATTTCAGTTTTCCCGTCCAGCGCTCGCTaGAGCCGGGCCGTCTCGCAG +
Preference number: 4 (lower is better)
Translates to: ISFCSVSVLDRSTGISVFPSSAR*SRAVSQ
Trigger: CTGCGAGACGGCCCGGCTGCAGCGAGCGCTGGACGG...GAAAACTGAAATTCCAGTGGATCTATCCAACACAGAAACTGAACAAAATGAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000462482.1
CDS-3UTR CCA 90 bp AGTTGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTGAATATATTCCCTCCGCAGCAATGTCTCTCTaGCCAGAAGGTCAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: SWENSRIWSLVHFEYIPSAAMSL*PEGQGR
Trigger: CCGCCCCTGACCTTCTGGCCAGAGAGACATTGCTGC...GGAGGGAATATATTCAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp ACCTGTCTCTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAATCTGTCCAAGCTGCAGAGTaGAGCGTGAGAGGTCAGCTG +
Preference number: 4 (lower is better)
Translates to: TCLYLQWSQYIVTQAWKSVQAAE*SVRGQL
Trigger: CAGCTGACCTCTCACGCTCCACTCTGCAGCTTGGAC...AGATTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp TGGTGTTCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAAGTCCAAGCTGCAGAGTaGAGCGTGAGAGGTCAGCTG +
Preference number: 4 (lower is better)
Translates to: WCSCCLQTATASSDSTEQVQAAE*SVRGQL
Trigger: CAGCTGACCTCTCACGCTCCACTCTGCAGCTTGGAC...TTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGAACACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp TGGCTGGCAGCAATGTCTCTCTGGCCAGAAGGTCAGGGGCGGCCTCATCTGAGTTACACAGTGAAAGGCTaGTATACATTTCAGAGTCAA +
Preference number: 4 (lower is better)
Translates to: WLAAMSLWPEGQGRPHLSYTVKG*YTFQSQ
Trigger: TTGACTCTGAAATGTATACCAGCCTTTCACTGTGTA...ACTCAGATGAGGCCGCCCCTGACCTTCTGGCCAGAGAGACATTGCTGCCAGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp AATCTGAAAGTTGTGGACTACGTGGAGACTTCTCAGAAATACAACTGCTTGCAATTCAAAGTCGTGCCCTaGCCGCCCGCCTCACGCACC +
Preference number: 4 (lower is better)
Translates to: NLKVVDYVETSQKYNCLQFKVVP*PPASRT
Trigger: GGTGCGTGAGGCGGGCGGCCAGGGCACGACTTTGAA...TTGCAAGCAGTTGTATTTCTGAGAAGTCTCCACGTAGTCCACAACTTTCAGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000465471.5
CDS-3UTR TCA 90 bp TGGACTACGTGGAGACTTCTCAGAAATACAACTGCTTGCAACAGGAGGATCAGATTTCCAACTGCTGGATaGTGGGGCTGGGAGTGGCAA +
Preference number: 4 (lower is better)
Translates to: WTTWRLLRNTTACNRRIRFPTAG*WGWEWQ
Trigger: TTGCCACTCCCAGCCCCATCATCCAGCAGTTGGAAA...TCTGATCCTCCTGTTGCAAGCAGTTGTATTTCTGAGAAGTCTCCACGTAGTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
CDS-3UTR TCA 90 bp TACTTAAATCAGAAGGATCGTAGGCCTGATAAGCAGGTCAACCTGAAGCTACCAGGTGTGGGACGGTCCTaGAAGGAGATGATGGGAAGG +
Preference number: 4 (lower is better)
Translates to: YLNQKDRRPDKQVNLKLPGVGRS*KEMMGR
Trigger: CCTTCCCATCATCTCCTTTCAGGACCGTCCCACACC...TGGTAGCTTCAGGTTGACCTGCTTATCAGGCCTACGATCCTTCTGATTTAAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp AATCAGAAGGATCGTAGGCCTGATAAGCAGGTCAACCTGAAGCTACCAGGCAGCACAAAACTCTCAACCTaGCAGCAGAGTTCCTGGTTC +
Preference number: 4 (lower is better)
Translates to: NQKDRRPDKQVNLKLPGSTKLST*QQSSWF
Trigger: GAACCAGGAACTCTGCTGTCAGGTTGAGAGTTTTGT...GCTGCCTGGTAGCTTCAGGTTGACCTGCTTATCAGGCCTACGATCCTTCTGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp AAATACTTTCTTCCTACTTCACTGGCCTCAGTCTCCTTTGCTAGATTACTCTGCCTGCAGAGTGGAGCGTaGGAGGTCAGCTGCCATGTG +
Preference number: 4 (lower is better)
Translates to: KYFLPTSLASVSFARLLCLQSGA*EVSCHV
Trigger: CACATGGCAGCTGACCTCTCACGCTCCACTCTGCAG...GCAGAGTAATCTAGCAAAGGAGACTGAGGCCAGTGAAGTAGGAAGAAAGTATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR GCA 90 bp AATCTGAAAGTTGTGGACTACGTGGAGACTTCTCAGAAATACAACTGCTTGCAATCTCGCAGTCCAGCGTaGTGGCCAGAGACCGCAGCT +
Preference number: 4 (lower is better)
Translates to: NLKVVDYVETSQKYNCLQSRSPA*WPETAA
Trigger: AGCTGCGGTCTCTGGCCAGCACGCTGGACTGCGAGA...TTGCAAGCAGTTGTATTTCTGAGAAGTCTCCACGTAGTCCACAACTTTCAGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
CDS-3UTR CCA 90 bp TTCTTTGTTGCTGACATCTCGGATGTTCTGTCCATGTTTAAGGAACCTTTTACTCGCAGTCCAGCGTGCTaGCCAGAGACCGCAGCTTCC +
Preference number: 4 (lower is better)
Translates to: FFVADISDVLSMFKEPFTRSPAC*PETAAS
Trigger: GGAAGCTGCGGTCTCTGGCCAGCACGCTGGACTGCG...AGTAAAAGGTTCCTTAAACATGGACAGAACATCCGAGATGTCAGCAACAAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000462482.1
CDS-3UTR TCA 90 bp GCCTCAGTCTCCTTTGCTAGATTACTCTGCCCCTTTCCATCCTCTAAAGTTGGGAGAGGCAGGGCAATGTaGATGTTAAAATCGGTCCAG +
Preference number: 4 (lower is better)
Translates to: ASVSFARLLCPFPSSKVGRGRAM*MLKSVQ
Trigger: CTGGACCGATTTTAACATTCACATTGCCCTGCCTCT...CCCAACTTTAGAGGATGGAAAGGGGCAGAGTAATCTAGCAAAGGAGACTGAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp TTCCAGCTGTACTTAAATCAGAAGGATCGTAGGCCTGATAAGCAGGTCAACCTGATAAGCAGGTCAACCTaGAGCTACCAGGCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: FQLYLNQKDRRPDKQVNLISRST*SYQAAL
Trigger: CAGAGCTGCCTGGTAGCTTCAGGTTGACCTGCTTAT...CAGGTTGACCTGCTTATCAGGCCTACGATCCTTCTGATTTAAGTACAGCTGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp CTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAATCTCCCTCTTTATAAGCAGGTCAACCTaGAGCTACCAGGCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: LPPMVTVYSYPGLEISLFISRST*SYQAAL
Trigger: CAGAGCTGCCTGGTAGCTTCAGGTTGACCTGCTTAT...AAAGAGGGAGATTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR GCA 90 bp AATAGAGCACAATGGACAGGTCCCCCATTTGACTTTCAAGGAACAATCATAAAATCTCGCAGTCCAGCGTaGTGGCCAGAGACCGCAGCT +
Preference number: 4 (lower is better)
Translates to: NRAQWTGPPFDFQGTIIKSRSPA*WPETAA
Trigger: AGCTGCGGTCTCTGGCCAGCACGCTGGACTGCGAGA...TTTTATGATTGTTCCTTGAAAGTCAAATGGGGGACCTGTCCATTGTGCTCTATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR GCA 90 bp AATGTTAAAATCGGTCCAGCTCGGCTTTCATCTCATTTTGTTCAGTTTCTGTGTTCTCGCAGTCCAGCGTaGTGGCCAGAGACCGCAGCT +
Preference number: 4 (lower is better)
Translates to: NVKIGPARLSSHFVQFLCSRSPA*WPETAA
Trigger: AGCTGCGGTCTCTGGCCAGCACGCTGGACTGCGAGA...ACACAGAAACTGAACAAAATGAGATGAAAGCCGAGCTGGACCGATTTTAACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000462482.1
CDS-3UTR GCA 90 bp AACAGTGCACAGGAGGGCCCCTGGCCCAGGATGAGCCCTCAGAACCTTTTAGAGCAGGGTAATCTTTACTaGATCAAATTCCCAAAACTA +
Preference number: 4 (lower is better)
Translates to: NSAQEGPWPRMSPQNLLEQGNLY*IKFPKL
Trigger: TAGTTTTGGGAATTTGATGCAGTAAAGATTACCCTG...CTCTAAAAGGTTCTGAGGGCTCATCCTGGGCCAGGGGCCCTCCTGTGCACTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp ATGCTAGGTCCTTATTTTCTCATTGGCTGTAATTTGACAAGTTCTCCAAAAGCACGCAGTCCAGCGTGCTaGCCAGAGACCGCAGCTTCC +
Preference number: 4 (lower is better)
Translates to: MLGPYFLIGCNLTSSPKARSPAC*PETAAS
Trigger: GGAAGCTGCGGTCTCTGGCCAGCACGCTGGACTGCG...TGCTTTTGGAGAACTTGTCAAATTACAGCCAATGAGAAAATAAGGACCTAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp GATAATACTTTCCAGCTGTACTTAAATCAGAAGGATCGTAGGCCTGATAAGCAGGCAGCAATGTCTCTCTaGCCAGAAGGTCAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: DNTFQLYLNQKDRRPDKQAAMSL*PEGQGR
Trigger: CCGCCCCTGACCTTCTGGCCAGAGAGACATTGCTGC...CTGCTTATCAGGCCTACGATCCTTCTGATTTAAGTACAGCTGGAAAGTATTATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp AAATACTTTCTTCCTACTTCACTGGCCTCAGTCTCCTTTGCTAGATTACTCTGCGTCCAAGCTGCAGAGTaGAGCGTGAGAGGTCAGCTG +
Preference number: 4 (lower is better)
Translates to: KYFLPTSLASVSFARLLCVQAAE*SVRGQL
Trigger: CAGCTGACCTCTCACGCTCCACTCTGCAGCTTGGAC...GCAGAGTAATCTAGCAAAGGAGACTGAGGCCAGTGAAGTAGGAAGAAAGTATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp ATCTCATTTTGTTCAGTTTCTGTGTTGGATAGATCCACTGGAATTTCAGTTTTCGCACAGGAGGGCCCCTaGCCCAGGATGAGCCCTCAG +
Preference number: 4 (lower is better)
Translates to: ISFCSVSVLDRSTGISVFAQEGP*PRMSPQ
Trigger: CTGAGGGCTCATCCTGGGCCAGGGGCCCTCCTGTGC...GAAAACTGAAATTCCAGTGGATCTATCCAACACAGAAACTGAACAAAATGAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000298260.8
CDS-3UTR TCA 90 bp AGTACTTTTACTAGTGATTGTTTGGTAGGTGGGGTTACAATTACGGGCTCTTCCTTTCCAACTGCTGGATaGTGGGGCTGGGAGTGGCAA +
Preference number: 4 (lower is better)
Translates to: STFTSDCLVGGVTITGSSFPTAG*WGWEWQ
Trigger: TTGCCACTCCCAGCCCCATCATCCAGCAGTTGGAAA...GGAAGAGCCCGTAATTGTAACCCCACCTACCAAACAATCACTAGTAAAAGTACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
CDS-3UTR TCA 90 bp CTGTCTCTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAATCTCCACAAAACTCTCAACCTaGCAGCAGAGTTCCTGGTTC +
Preference number: 4 (lower is better)
Translates to: LSLPPMVTVYSYPGLEISTKLST*QQSSWF
Trigger: GAACCAGGAACTCTGCTGTCAGGTTGAGAGTTTTGT...GGAGATTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp AGTTGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTGAATATATTCCCTCCATAAGCAGGTCAACCTaGAGCTACCAGGCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: SWENSRIWSLVHFEYIPSISRST*SYQAAL
Trigger: CAGAGCTGCCTGGTAGCTTCAGGTTGACCTGCTTAT...GGAGGGAATATATTCAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCAACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR GCA 90 bp AATCAGAAGGATCGTAGGCCTGATAAGCAGGTCAACCTGAAGCTACCAGGCAGCGGTGTTCCTGTTGTTTaGAAACAGCAACTGCATCTT +
Preference number: 4 (lower is better)
Translates to: NQKDRRPDKQVNLKLPGSGVPVV*KQQLHL
Trigger: AAGATGCAGTTGCTGTTTGCAAACAACAGGAACACC...GCTGCCTGGTAGCTTCAGGTTGACCTGCTTATCAGGCCTACGATCCTTCTGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR GCA 90 bp TCCTTGAAATACTTTCTTCCTACTTCACTGGCCTCAGTCTCCTTTGCTAGATTAACTGGGTGTCCAAGCTaGAGAGTGGAGCGTGAGAGG +
Preference number: 4 (lower is better)
Translates to: SLKYFLPTSLASVSFARLTGCPS*RVERER
Trigger: CCTCTCACGCTCCACTCTGCAGCTTGGACACCCAGT...TAATCTAGCAAAGGAGACTGAGGCCAGTGAAGTAGGAAGAAAGTATTTCAAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp ATGTTAATGTTCATGTTTGTCTTTAAAATGGGTCAACGTTTAAAGGGGGACAGACGCAGTCCAGCGTGCTaGCCAGAGACCGCAGCTTCC +
Preference number: 4 (lower is better)
Translates to: MLMFMFVFKMGQRLKGDRRSPAC*PETAAS
Trigger: GGAAGCTGCGGTCTCTGGCCAGCACGCTGGACTGCG...TCTGTCCCCCTTTAAACGTTGACCCATTTTAAAGACAAACATGAACATTAACAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
ENST00000462482.1
CDS-3UTR CCA 90 bp GACATCTCGGATGTTCTGTCCATGTTTAAGGAACCTTTTACTGGGTGGCACTGCGGGTTTGGTAGAACTTaGGATACGATGTACCGCTCA +
Preference number: 4 (lower is better)
Translates to: DISDVLSMFKEPFTGWHCGFGRT*DTMYRS
Trigger: TGAGCGGTACATCGTATCCCAAGTTCTACCAAACCC...GCAGTGCCACCCAGTAAAAGGTTCCTTAAACATGGACAGAACATCCGAGATGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298260.8
CDS-3UTR CCA 90 bp GGTGTTCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAAGGGGTTTGGTAGAACTTaGGATACGATGTACCGCTCA +
Preference number: 4 (lower is better)
Translates to: GVPVVCKQQLHLQTALSKGFGRT*DTMYRS
Trigger: TGAGCGGTACATCGTATCCCAAGTTCTACCAAACCC...CTTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGAACACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp ACTGGTGTTCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAAATTCAGGGTCTACTaGGTGTCCAAGCTGCAGAGT +
Preference number: 4 (lower is better)
Translates to: TGVPVVCKQQLHLQTALSKFRVY*VSKLQS
Trigger: ACTCTGCAGCTTGGACACCCAGTAGACCCTGAATTT...GCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGAACACCAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp TGGTGTTCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAAATCTTCAGACAGCACTaGGCAAGTAAAAGGTGTGGG +
Preference number: 4 (lower is better)
Translates to: WCSCCLQTATASSDSTEQIFRQH*ASKRCG
Trigger: CCCACACCTTTTACTTGCTCAGTGCTGTCTGAAGAT...TTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGAACACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp GGAGGGTTTGGTAGAACTTGGGATACGATGTACCGCTCAAGTCCAAAATCTGAAGGGTTTGGTAGAACTTaGGATACGATGTACCGCTCA +
Preference number: 4 (lower is better)
Translates to: GGFGRTWDTMYRSSPKSEGFGRT*DTMYRS
Trigger: TGAGCGGTACATCGTATCCCAAGTTCTACCAAACCC...TTCAGATTTTGGACTTGAGCGGTACATCGTATCCCAAGTTCTACCAAACCCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
3UTR CAA 72 bp TGGATGATGGGGCTGGGAGTGGCAAAAACATTATCATaGAGCCTGGATTCTGTATCTATGGCCTCCTCACTT +
Preference number: 4 (lower is better)
Translates to: WMMGLGVAKTLS*SLDSVSMASSL
Trigger: AAGTGAGGAGGCCATAGATACAGAATCCAGGCTCAATGATAATGTTTTTGCCACTCCCAGCCCCATCATCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
CDS-3UTR TCA 90 bp TGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTGAATATATTCCCTCCCTAAGAGGCAGGGCAATGTaGATGTTAAAATCGGTCCAG +
Preference number: 4 (lower is better)
Translates to: WENSRIWSLVHFEYIPSLRGRAM*MLKSVQ
Trigger: CTGGACCGATTTTAACATTCACATTGCCCTGCCTCT...TAGGGAGGGAATATATTCAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp GAAATACAACTGCTTGCAACAGGAGGATCAGACAGATCATCTTTCACATCAGTCAGGGGCGGCCTCATCTaGGTAGCAAACACCTTTATA +
Preference number: 4 (lower is better)
Translates to: EIQLLATGGSDRSSFTSVRGGLI*VANTFI
Trigger: TATAAAGGTGTTTGCTACTCAGATGAGGCCGCCCCT...GACTGATGTGAAAGATGATCTGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298260.8
CDS-3UTR TCA 90 bp GATAATACTTTCCAGCTGTACTTAAATCAGAAGGATCGTAGGCCTGATAAGCAGCCTGGTTCCAACTGTTaGGACCTGTCTCTACCTCCA +
Preference number: 4 (lower is better)
Translates to: DNTFQLYLNQKDRRPDKQPGSNC*DLSLPP
Trigger: TGGAGGTAGAGACAGGTCTCAACAGTTGGAACCAGG...CTGCTTATCAGGCCTACGATCCTTCTGATTTAAGTACAGCTGGAAAGTATTATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp GGTGTTCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAAGTGTGATAGAAAGAGCTaGCATAAGAGAAAAGACCCC +
Preference number: 4 (lower is better)
Translates to: GVPVVCKQQLHLQTALSKCDRKS*HKRKDP
Trigger: GGGGTCTTTTCTCTTATGTCAGCTCTTTCTATCACA...CTTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGAACACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp TTCACTGCCTGTGGAGGGTTTGGTAGAACTTGGGATACGATGTACCGCTCAAGTACAATTAGACAACTCTaGGTCAGAGTTAATGGCTTC +
Preference number: 4 (lower is better)
Translates to: FTACGGFGRTWDTMYRSSTIRQL*VRVNGF
Trigger: GAAGCCATTAACTCTGACCCAGAGTTGTCTAATTGT...ACTTGAGCGGTACATCGTATCCCAAGTTCTACCAAACCCTCCACAGGCAGTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
CDS-3UTR CCA 90 bp ATCTCATTTTGTTCAGTTTCTGTGTTGGATAGATCCACTGGAATTTCAGTTTTCGCAGCAATGTCTCTCTaGCCAGAAGGTCAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: ISFCSVSVLDRSTGISVFAAMSL*PEGQGR
Trigger: CCGCCCCTGACCTTCTGGCCAGAGAGACATTGCTGC...GAAAACTGAAATTCCAGTGGATCTATCCAACACAGAAACTGAACAAAATGAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000462482.1
CDS-3UTR CCA 90 bp AGTTGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTGAATATATTCCCTCCAAATTCAGGGTCTACTaGGTGTCCAAGCTGCAGAGT +
Preference number: 4 (lower is better)
Translates to: SWENSRIWSLVHFEYIPSKFRVY*VSKLQS
Trigger: ACTCTGCAGCTTGGACACCCAGTAGACCCTGAATTT...GGAGGGAATATATTCAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCAACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp AATCAGAAGGATCGTAGGCCTGATAAGCAGGTCAACCTGAAGCTACCAGGCAGCTACACAGTGAAAGGCTaGTATACATTTCAGAGTCAA +
Preference number: 4 (lower is better)
Translates to: NQKDRRPDKQVNLKLPGSYTVKG*YTFQSQ
Trigger: TTGACTCTGAAATGTATACCAGCCTTTCACTGTGTA...GCTGCCTGGTAGCTTCAGGTTGACCTGCTTATCAGGCCTACGATCCTTCTGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp TTCCAGCTGTACTTAAATCAGAAGGATCGTAGGCCTGATAAGCAGGTCAACCTGTTCTTGCTCGTGTACTaGATTTTTCTTGACACGTGG +
Preference number: 4 (lower is better)
Translates to: FQLYLNQKDRRPDKQVNLFLLVY*IFLDTW
Trigger: CCACGTGTCAAGAAAAATTCAGTACACGAGCAAGAA...CAGGTTGACCTGCTTATCAGGCCTACGATCCTTCTGATTTAAGTACAGCTGGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp TGGTGTTCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAATCCTTAAAGAGTGAATaGCTGGGCTACATGTCAACA +
Preference number: 4 (lower is better)
Translates to: WCSCCLQTATASSDSTEQSLKSE*LGYMST
Trigger: TGTTGACATGTAGCCCAGTCATTCACTCTTTAAGGA...TTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGAACACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp CTGGCCTCAGTCTCCTTTGCTAGATTACTCTGCCCCTTTCCATCCTCTAAAGTTATAATCCTTAAAGAGTaGATGACTGGGCTACATGTC +
Preference number: 4 (lower is better)
Translates to: LASVSFARLLCPFPSSKVIILKE*MTGLHV
Trigger: GACATGTAGCCCAGTCATTCACTCTTTAAGGATTAT...AACTTTAGAGGATGGAAAGGGGCAGAGTAATCTAGCAAAGGAGACTGAGGCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp ATCTCATTTTGTTCAGTTTCTGTGTTGGATAGATCCACTGGAATTTCAGTTTTCGGTGTGGGACGGTCCTaGAAGGAGATGATGGGAAGG +
Preference number: 4 (lower is better)
Translates to: ISFCSVSVLDRSTGISVFGVGRS*KEMMGR
Trigger: CCTTCCCATCATCTCCTTTCAGGACCGTCCCACACC...GAAAACTGAAATTCCAGTGGATCTATCCAACACAGAAACTGAACAAAATGAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000462482.1
CDS-3UTR TCA 90 bp GGTTTGGTAGAACTTGGGATACGATGTACCGCTCAAGTCCAAAATCTGAAAGTTATCTTCAGACAGCACTaGGCAAGTAAAAGGTGTGGG +
Preference number: 4 (lower is better)
Translates to: GLVELGIRCTAQVQNLKVIFRQH*ASKRCG
Trigger: CCCACACCTTTTACTTGCTCAGTGCTGTCTGAAGAT...AACTTTCAGATTTTGGACTTGAGCGGTACATCGTATCCCAAGTTCTACCAAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000298260.8
CDS-3UTR TCA 90 bp AATAGAGCACAATGGACAGGTCCCCCATTTGACTTTCAAGGAACAATCATAAAACCTGGTTCCAACTGTTaGGACCTGTCTCTACCTCCA +
Preference number: 4 (lower is better)
Translates to: NRAQWTGPPFDFQGTIIKPGSNC*DLSLPP
Trigger: TGGAGGTAGAGACAGGTCTCAACAGTTGGAACCAGG...TTTTATGATTGTTCCTTGAAAGTCAAATGGGGGACCTGTCCATTGTGCTCTATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp GGTGTTCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAAGTCATTGGCTGTAATTTaGCAAGTTCTCCAAAAGCAC +
Preference number: 4 (lower is better)
Translates to: GVPVVCKQQLHLQTALSKSLAVI*QVLQKH
Trigger: GTGCTTTTGGAGAACTTGTCAAATTACAGCCAATGA...CTTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGAACACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp AGTTGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTGAATATATTCCCTCCACACACGGTACACAGTaGAAGGCTGGTATACATTTC +
Preference number: 4 (lower is better)
Translates to: SWENSRIWSLVHFEYIPSTHGTQ*KAGIHF
Trigger: GAAATGTATACCAGCCTTTCACTGTGTACCGTGTGT...GGAGGGAATATATTCAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCAACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR GCA 90 bp GCCTCAGTCTCCTTTGCTAGATTACTCTGCCCCTTTCCATCCTCTAAAGTTGGGGAGTTAATGGCTTCTTaGTCGTGTACTGAATTTTTC +
Preference number: 4 (lower is better)
Translates to: ASVSFARLLCPFPSSKVGELMAS*SCTEFF
Trigger: GAAAAATTCAGTACACGAGCAAGAAGCCATTAACTC...CCCAACTTTAGAGGATGGAAAGGGGCAGAGTAATCTAGCAAAGGAGACTGAGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp CTGTCTCTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAATCTCCACAATTAGACAACTCTaGGTCAGAGTTAATGGCTTC +
Preference number: 4 (lower is better)
Translates to: LSLPPMVTVYSYPGLEISTIRQL*VRVNGF
Trigger: GAAGCCATTAACTCTGACCCAGAGTTGTCTAATTGT...GGAGATTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp GAGACCTGTCTCTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAAACAATTAGACAACTCTaGGTCAGAGTTAATGGCTTC +
Preference number: 4 (lower is better)
Translates to: ETCLYLQWSQYIVTQAWKTIRQL*VRVNGF
Trigger: GAAGCCATTAACTCTGACCCAGAGTTGTCTAATTGT...TTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAGGTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp GAGACCTGTCTCTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAAAAGTTGTGGACTACGTaGAGACTTCTCAGAAATACA +
Preference number: 4 (lower is better)
Translates to: ETCLYLQWSQYIVTQAWKKLWTT*RLLRNT
Trigger: TGTATTTCTGAGAAGTCTCCACGTAGTCCACAACTT...TTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAGGTCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp TACTTAAATCAGAAGGATCGTAGGCCTGATAAGCAGGTCAACCTGAAGCTACCAATAGTTACCCAGGCCTaGAAATCTCCCTCTTTTCCT +
Preference number: 4 (lower is better)
Translates to: YLNQKDRRPDKQVNLKLPIVTQA*KSPSFP
Trigger: AGGAAAAGAGGGAGATTTCCAGGCCTGGGTAACTAT...TGGTAGCTTCAGGTTGACCTGCTTATCAGGCCTACGATCCTTCTGATTTAAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp GAGACCTGTCTCTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAATGTCTCTACCTCCAATaGTCACAGTATATAGTTACC +
Preference number: 4 (lower is better)
Translates to: ETCLYLQWSQYIVTQAWKCLYLQ*SQYIVT
Trigger: GGTAACTATATACTGTGACCATTGGAGGTAGAGACA...TTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAGGTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp TCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAAGTAAAAAAATTCAGGGTCTACTaGGTGTCCAAGCTGCAGAGT +
Preference number: 4 (lower is better)
Translates to: SCCLQTATASSDSTEQVKKFRVY*VSKLQS
Trigger: ACTCTGCAGCTTGGACACCCAGTAGACCCTGAATTT...TTTTACTTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGA
44% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp ACTACGTGGAGACTTCTCAGAAATACAACTGCTTGCAACAGGAGGATCAGACAGGCTCATCCGGTTCTGTaGATTTATATACACACGGTA +
Preference number: 4 (lower is better)
Translates to: TTWRLLRNTTACNRRIRQAHPVL*IYIHTV
Trigger: TACCGTGTGTATATAAATCCACAGAACCGGATGAGC...CTGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTCTGAGAAGTCTCCACGTAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298260.8
CDS-3UTR TCA 90 bp ATGTTAATGTTCATGTTTGTCTTTAAAATGGGTCAACGTTTAAAGGGGGACAGATTTCCAACTGCTGGATaGTGGGGCTGGGAGTGGCAA +
Preference number: 4 (lower is better)
Translates to: MLMFMFVFKMGQRLKGDRFPTAG*WGWEWQ
Trigger: TTGCCACTCCCAGCCCCATCATCCAGCAGTTGGAAA...TCTGTCCCCCTTTAAACGTTGACCCATTTTAAAGACAAACATGAACATTAACAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp GTAGAACTTGGGATACGATGTACCGCTCAAGTCCAAAATCTGAAAGTTGTGGACAGTTTTCTTTGTTGCTaGCATCTCGGATGTTCTGTC +
Preference number: 4 (lower is better)
Translates to: VELGIRCTAQVQNLKVVDSFLCC*HLGCSV
Trigger: GACAGAACATCCGAGATGTCAGCAACAAAGAAAACT...GTCCACAACTTTCAGATTTTGGACTTGAGCGGTACATCGTATCCCAAGTTCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000298260.8
CDS-3UTR TCA 90 bp AGTTGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTGAATATATTCCCTCCTCCTTAAAGAGTGAATaGCTGGGCTACATGTCAACA +
Preference number: 4 (lower is better)
Translates to: SWENSRIWSLVHFEYIPSSLKSE*LGYMST
Trigger: TGTTGACATGTAGCCCAGTCATTCACTCTTTAAGGA...GGAGGGAATATATTCAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCAACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp AATGTTAAAATCGGTCCAGCTCGGCTTTCATCTCATTTTGTTCAGTTTCTGTGTAGGGGCGGCCTCATCTaGGTAGCAAACACCTTTATA +
Preference number: 4 (lower is better)
Translates to: NVKIGPARLSSHFVQFLCRGGLI*VANTFI
Trigger: TATAAAGGTGTTTGCTACTCAGATGAGGCCGCCCCT...ACACAGAAACTGAACAAAATGAGATGAAAGCCGAGCTGGACCGATTTTAACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000462482.1
CDS-3UTR TCA 90 bp TTCTTTGTTGCTGACATCTCGGATGTTCTGTCCATGTTTAAGGAACCTTTTACTAGGGGCGGCCTCATCTaGGTAGCAAACACCTTTATA +
Preference number: 4 (lower is better)
Translates to: FFVADISDVLSMFKEPFTRGGLI*VANTFI
Trigger: TATAAAGGTGTTTGCTACTCAGATGAGGCCGCCCCT...AGTAAAAGGTTCCTTAAACATGGACAGAACATCCGAGATGTCAGCAACAAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000462482.1
CDS-3UTR TCA 90 bp ACCTGTCTCTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAATCTTCATTGGCTGTAATTTaGCAAGTTCTCCAAAAGCAC +
Preference number: 4 (lower is better)
Translates to: TCLYLQWSQYIVTQAWKSSLAVI*QVLQKH
Trigger: GTGCTTTTGGAGAACTTGTCAAATTACAGCCAATGA...AGATTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp GAAATACAACTGCTTGCAACAGGAGGATCAGACAGATCATCTTTCACATCAGTCACACACGGTACACAGTaGAAGGCTGGTATACATTTC +
Preference number: 4 (lower is better)
Translates to: EIQLLATGGSDRSSFTSVTHGTQ*KAGIHF
Trigger: GAAATGTATACCAGCCTTTCACTGTGTACCGTGTGT...GACTGATGTGAAAGATGATCTGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298260.8
CDS-3UTR GCA 90 bp GTAGAACTTGGGATACGATGTACCGCTCAAGTCCAAAATCTGAAAGTTGTGGACAGAAATACAACTGCTTaGAACAGGAGGATCAGACAG +
Preference number: 4 (lower is better)
Translates to: VELGIRCTAQVQNLKVVDRNTTA*NRRIRQ
Trigger: CTGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTCT...GTCCACAACTTTCAGATTTTGGACTTGAGCGGTACATCGTATCCCAAGTTCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
CDS-3UTR GCA 90 bp AAAGTTGTGGACTACGTGGAGACTTCTCAGAAATACAACTGCTTGCAACAGGAGAGAAATACAACTGCTTaGAACAGGAGGATCAGACAG +
Preference number: 4 (lower is better)
Translates to: KVVDYVETSQKYNCLQQERNTTA*NRRIRQ
Trigger: CTGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTCT...CTCCTGTTGCAAGCAGTTGTATTTCTGAGAAGTCTCCACGTAGTCCACAACTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
CDS-3UTR GCA 90 bp CTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAATCTCCCTCTTTTTTACTGGGTGGCACTaGTTTAATTGCTATTGGAGT +
Preference number: 4 (lower is better)
Translates to: LPPMVTVYSYPGLEISLFFTGWH*FNCYWS
Trigger: ACTCCAATAGCAATTAAAGCAGTGCCACCCAGTAAA...AAAGAGGGAGATTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAG
43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000314759.6
CDS-3UTR GCA 90 bp TTTCCATCCTCTAAAGTTGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTGGGTGTTCCTGTTGTTTaGAAACAGCAACTGCATCTT +
Preference number: 4 (lower is better)
Translates to: FPSSKVGRTPGFGPWYTLGVPVV*KQQLHL
Trigger: AAGATGCAGTTGCTGTTTGCAAACAACAGGAACACC...CAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCAACTTTAGAGGATGGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR GCA 90 bp GCCTCAGTCTCCTTTGCTAGATTACTCTGCCCCTTTCCATCCTCTAAAGTTGGGCAGGGTAATCTTTACTaGATCAAATTCCCAAAACTA +
Preference number: 4 (lower is better)
Translates to: ASVSFARLLCPFPSSKVGQGNLY*IKFPKL
Trigger: TAGTTTTGGGAATTTGATGCAGTAAAGATTACCCTG...CCCAACTTTAGAGGATGGAAAGGGGCAGAGTAATCTAGCAAAGGAGACTGAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR GCA 90 bp ACCTGTCTCTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAATCTTTTGCTAGATTACTCTaGCCCTTTCCATCCTCTAAA +
Preference number: 4 (lower is better)
Translates to: TCLYLQWSQYIVTQAWKSFARLL*PFPSSK
Trigger: TTTAGAGGATGGAAAGGGGCAGAGTAATCTAGCAAA...AGATTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp CCTTTTAGAGAGAGTGAAATTCAGGGTCTACTGGGTGTCCAAGCTGCAGAGTGGATTTTTCTTGACACGTaGACTATATCCATACTTCTG +
Preference number: 4 (lower is better)
Translates to: PFRESEIQGLLGVQAAEWIFLDT*TISILL
Trigger: CAGAAGTATGGATATAGTCCACGTGTCAAGAAAAAT...CCACTCTGCAGCTTGGACACCCAGTAGACCCTGAATTTCACTCTCTCTAAAAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp CTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAATCTCCCTCTTTAAGTTGTGGACTACGTaGAGACTTCTCAGAAATACA +
Preference number: 4 (lower is better)
Translates to: LPPMVTVYSYPGLEISLFKLWTT*RLLRNT
Trigger: TGTATTTCTGAGAAGTCTCCACGTAGTCCACAACTT...AAAGAGGGAGATTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp ACCTGTCTCTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAATCTGTACCAAAGGAGAGTTaGTATATTCGGCATCACTTT +
Preference number: 4 (lower is better)
Translates to: TCLYLQWSQYIVTQAWKSVPKES*YIRHHF
Trigger: AAAGTGATGCCGAATATACCAACTCTCCTTTGGTAC...AGATTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp GGTGTTCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAAGACTTGTCCTACTTCCTaGTACTACTTAAACCATTCT +
Preference number: 4 (lower is better)
Translates to: GVPVVCKQQLHLQTALSKTCPTS*YYLNHS
Trigger: AGAATGGTTTAAGTAGTACCAGGAAGTAGGACAAGT...CTTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGAACACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp GACATCTCGGATGTTCTGTCCATGTTTAAGGAACCTTTTACTGGGTGGCACTGCACTTGTCCTACTTCCTaGTACTACTTAAACCATTCT +
Preference number: 4 (lower is better)
Translates to: DISDVLSMFKEPFTGWHCTCPTS*YYLNHS
Trigger: AGAATGGTTTAAGTAGTACCAGGAAGTAGGACAAGT...GCAGTGCCACCCAGTAAAAGGTTCCTTAAACATGGACAGAACATCCGAGATGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000462482.1
CDS-3UTR CCA 90 bp CAGGGCAATGTGAATGTTAAAATCGGTCCAGCTCGGCTTTCATCTCATTTTGTTATAGTTACCCAGGCCTaGAAATCTCCCTCTTTTCCT +
Preference number: 4 (lower is better)
Translates to: QGNVNVKIGPARLSSHFVIVTQA*KSPSFP
Trigger: AGGAAAAGAGGGAGATTTCCAGGCCTGGGTAACTAT...AACAAAATGAGATGAAAGCCGAGCTGGACCGATTTTAACATTCACATTGCCCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000314759.6
CDS-3UTR CCA 90 bp TGGGGTTACAATTACGGGCTCTTCCTTATAGTTGTTCACTGCCTGTGGAGGGTTTACACAGTGAAAGGCTaGTATACATTTCAGAGTCAA +
Preference number: 4 (lower is better)
Translates to: WGYNYGLFLIVVHCLWRVYTVKG*YTFQSQ
Trigger: TTGACTCTGAAATGTATACCAGCCTTTCACTGTGTA...AACCCTCCACAGGCAGTGAACAACTATAAGGAAGAGCCCGTAATTGTAACCCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298260.8
CDS-3UTR CCA 90 bp TCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAAGTAAAATTCTTCCTACTTCACTaGCCTCAGTCTCCTTTGCTA +
Preference number: 4 (lower is better)
Translates to: SCCLQTATASSDSTEQVKFFLLH*PQSPLL
Trigger: TAGCAAAGGAGACTGAGGCCAGTGAAGTAGGAAGAA...TTTTACTTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp ACCTGTCTCTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAATCTGTACTGAATTTTTCTTaGCACGTGGACTATATCCAT +
Preference number: 4 (lower is better)
Translates to: TCLYLQWSQYIVTQAWKSVLNFS*HVDYIH
Trigger: ATGGATATAGTCCACGTGTCAAGAAAAATTCAGTAC...AGATTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAGAGACAGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp GGTATACATTTCAGAGTCAATGGCATACATAAGGCTGACTACAGCTTTACTTTGAGAGGCAGGGCAATGTaGATGTTAAAATCGGTCCAG +
Preference number: 4 (lower is better)
Translates to: GIHFRVNGIHKADYSFTLRGRAM*MLKSVQ
Trigger: CTGGACCGATTTTAACATTCACATTGCCCTGCCTCT...CAAAGTAAAGCTGTAGTCAGCCTTATGTATGCCATTGACTCTGAAATGTATACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp GAAATACAACTGCTTGCAACAGGAGGATCAGACAGATCATCTTTCACATCAGTCTGTGATAGAAAGAGCTaGCATAAGAGAAAAGACCCC +
Preference number: 4 (lower is better)
Translates to: EIQLLATGGSDRSSFTSVCDRKS*HKRKDP
Trigger: GGGGTCTTTTCTCTTATGTCAGCTCTTTCTATCACA...GACTGATGTGAAAGATGATCTGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298260.8
CDS-3UTR GCA 90 bp CAGGGCAATGTGAATGTTAAAATCGGTCCAGCTCGGCTTTCATCTCATTTTGTTAGAAATACAACTGCTTaGAACAGGAGGATCAGACAG +
Preference number: 4 (lower is better)
Translates to: QGNVNVKIGPARLSSHFVRNTTA*NRRIRQ
Trigger: CTGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTCT...AACAAAATGAGATGAAAGCCGAGCTGGACCGATTTTAACATTCACATTGCCCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000314759.6
CDS-3UTR GCA 90 bp TACTTAAATCAGAAGGATCGTAGGCCTGATAAGCAGGTCAACCTGAAGCTACCATTTACTGGGTGGCACTaGTTTAATTGCTATTGGAGT +
Preference number: 4 (lower is better)
Translates to: YLNQKDRRPDKQVNLKLPFTGWH*FNCYWS
Trigger: ACTCCAATAGCAATTAAAGCAGTGCCACCCAGTAAA...TGGTAGCTTCAGGTTGACCTGCTTATCAGGCCTACGATCCTTCTGATTTAAGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000314759.6
CDS-3UTR CCA 90 bp GTAGAACTTGGGATACGATGTACCGCTCAAGTCCAAAATCTGAAAGTTGTGGACACAATTAGACAACTCTaGGTCAGAGTTAATGGCTTC +
Preference number: 4 (lower is better)
Translates to: VELGIRCTAQVQNLKVVDTIRQL*VRVNGF
Trigger: GAAGCCATTAACTCTGACCCAGAGTTGTCTAATTGT...GTCCACAACTTTCAGATTTTGGACTTGAGCGGTACATCGTATCCCAAGTTCTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
CDS-3UTR CCA 90 bp TGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTGAATATATTCCCTCCCTAAAGTTGTGGACTACGTaGAGACTTCTCAGAAATACA +
Preference number: 4 (lower is better)
Translates to: WENSRIWSLVHFEYIPSLKLWTT*RLLRNT
Trigger: TGTATTTCTGAGAAGTCTCCACGTAGTCCACAACTT...TAGGGAGGGAATATATTCAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp GATAATACTTTCCAGCTGTACTTAAATCAGAAGGATCGTAGGCCTGATAAGCAGATAGTTACCCAGGCCTaGAAATCTCCCTCTTTTCCT +
Preference number: 4 (lower is better)
Translates to: DNTFQLYLNQKDRRPDKQIVTQA*KSPSFP
Trigger: AGGAAAAGAGGGAGATTTCCAGGCCTGGGTAACTAT...CTGCTTATCAGGCCTACGATCCTTCTGATTTAAGTACAGCTGGAAAGTATTATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp AGTTGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTGAATATATTCCCTCCTGTCTCTACCTCCAATaGTCACAGTATATAGTTACC +
Preference number: 4 (lower is better)
Translates to: SWENSRIWSLVHFEYIPSCLYLQ*SQYIVT
Trigger: GGTAACTATATACTGTGACCATTGGAGGTAGAGACA...GGAGGGAATATATTCAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCAACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp TCCTTGAAATACTTTCTTCCTACTTCACTGGCCTCAGTCTCCTTTGCTAGATTATTCTTCCTACTTCACTaGCCTCAGTCTCCTTTGCTA +
Preference number: 4 (lower is better)
Translates to: SLKYFLPTSLASVSFARLFFLLH*PQSPLL
Trigger: TAGCAAAGGAGACTGAGGCCAGTGAAGTAGGAAGAA...TAATCTAGCAAAGGAGACTGAGGCCAGTGAAGTAGGAAGAAAGTATTTCAAGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp AAAGTTGTGGACTACGTGGAGACTTCTCAGAAATACAACTGCTTGCAACAGGAGGTACTGAATTTTTCTTaGCACGTGGACTATATCCAT +
Preference number: 4 (lower is better)
Translates to: KVVDYVETSQKYNCLQQEVLNFS*HVDYIH
Trigger: ATGGATATAGTCCACGTGTCAAGAAAAATTCAGTAC...CTCCTGTTGCAAGCAGTTGTATTTCTGAGAAGTCTCCACGTAGTCCACAACTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
CDS-3UTR TCA 90 bp GATAATACTTTCCAGCTGTACTTAAATCAGAAGGATCGTAGGCCTGATAAGCAGTCCTTAAAGAGTGAATaGCTGGGCTACATGTCAACA +
Preference number: 4 (lower is better)
Translates to: DNTFQLYLNQKDRRPDKQSLKSE*LGYMST
Trigger: TGTTGACATGTAGCCCAGTCATTCACTCTTTAAGGA...CTGCTTATCAGGCCTACGATCCTTCTGATTTAAGTACAGCTGGAAAGTATTATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp ATGTTAATGTTCATGTTTGTCTTTAAAATGGGTCAACGTTTAAAGGGGGACAGAAGGGGCGGCCTCATCTaGGTAGCAAACACCTTTATA +
Preference number: 4 (lower is better)
Translates to: MLMFMFVFKMGQRLKGDRRGGLI*VANTFI
Trigger: TATAAAGGTGTTTGCTACTCAGATGAGGCCGCCCCT...TCTGTCCCCCTTTAAACGTTGACCCATTTTAAAGACAAACATGAACATTAACAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
ENST00000462482.1
CDS-3UTR TCA 90 bp AACAGGGTAATCTTTACTGCATCAAATTCCCAAAACTACGCCTTTGAAGTAAGTACAAAACTCTCAACCTaGCAGCAGAGTTCCTGGTTC +
Preference number: 4 (lower is better)
Translates to: NRVIFTASNSQNYAFEVSTKLST*QQSSWF
Trigger: GAACCAGGAACTCTGCTGTCAGGTTGAGAGTTTTGT...ACTTACTTCAAAGGCGTAGTTTTGGGAATTTGATGCAGTAAAGATTACCCTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR GCA 90 bp TTTCCATCCTCTAAAGTTGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTGGAGTTAATGGCTTCTTaGTCGTGTACTGAATTTTTC +
Preference number: 4 (lower is better)
Translates to: FPSSKVGRTPGFGPWYTLELMAS*SCTEFF
Trigger: GAAAAATTCAGTACACGAGCAAGAAGCCATTAACTC...CAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCAACTTTAGAGGATGGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR GCA 90 bp GGTGACAGTTTTCTGACAAGATTAATAGAGCACAATGGACAGGTCCCCCATTTGGAGTTAATGGCTTCTTaGTCGTGTACTGAATTTTTC +
Preference number: 4 (lower is better)
Translates to: GDSFLTRLIEHNGQVPHLELMAS*SCTEFF
Trigger: GAAAAATTCAGTACACGAGCAAGAAGCCATTAACTC...CAAATGGGGGACCTGTCCATTGTGCTCTATTAATCTTGTCAGAAAACTGTCACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp GGTTTGGTAGAACTTGGGATACGATGTACCGCTCAAGTCCAAAATCTGAAAGTTAAGTTGTGGACTACGTaGAGACTTCTCAGAAATACA +
Preference number: 4 (lower is better)
Translates to: GLVELGIRCTAQVQNLKVKLWTT*RLLRNT
Trigger: TGTATTTCTGAGAAGTCTCCACGTAGTCCACAACTT...AACTTTCAGATTTTGGACTTGAGCGGTACATCGTATCCCAAGTTCTACCAAACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
CDS-3UTR CCA 90 bp AGTTGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTGAATATATTCCCTCCCCAGGATTTGGTCCTTaGTACACTTTGAATATATTC +
Preference number: 4 (lower is better)
Translates to: SWENSRIWSLVHFEYIPSPGFGP*YTLNIF
Trigger: GAATATATTCAAAGTGTACCAAGGACCAAATCCTGG...GGAGGGAATATATTCAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp GAAATACAACTGCTTGCAACAGGAGGATCAGACAGATCATCTTTCACATCAGTCGTACTGAATTTTTCTTaGCACGTGGACTATATCCAT +
Preference number: 4 (lower is better)
Translates to: EIQLLATGGSDRSSFTSVVLNFS*HVDYIH
Trigger: ATGGATATAGTCCACGTGTCAAGAAAAATTCAGTAC...GACTGATGTGAAAGATGATCTGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
CDS-3UTR TCA 90 bp AATGTTAAAATCGGTCCAGCTCGGCTTTCATCTCATTTTGTTCAGTTTCTGTGTAGTTTTCTTTGTTGCTaGCATCTCGGATGTTCTGTC +
Preference number: 4 (lower is better)
Translates to: NVKIGPARLSSHFVQFLCSFLCC*HLGCSV
Trigger: GACAGAACATCCGAGATGTCAGCAACAAAGAAAACT...ACACAGAAACTGAACAAAATGAGATGAAAGCCGAGCTGGACCGATTTTAACATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000462482.1
CDS-3UTR TCA 90 bp TTTCAGTTTTCTTTGTTGCTGACATCTCGGATGTTCTGTCCATGTTTAAGGAACTCCTTAAAGAGTGAATaGCTGGGCTACATGTCAACA +
Preference number: 4 (lower is better)
Translates to: FQFSLLLTSRMFCPCLRNSLKSE*LGYMST
Trigger: TGTTGACATGTAGCCCAGTCATTCACTCTTTAAGGA...GTTCCTTAAACATGGACAGAACATCCGAGATGTCAGCAACAAAGAAAACTGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000462482.1
CDS-3UTR TCA 90 bp GATAATACTTTCCAGCTGTACTTAAATCAGAAGGATCGTAGGCCTGATAAGCAGATAATCCTTAAAGAGTaGATGACTGGGCTACATGTC +
Preference number: 4 (lower is better)
Translates to: DNTFQLYLNQKDRRPDKQIILKE*MTGLHV
Trigger: GACATGTAGCCCAGTCATTCACTCTTTAAGGATTAT...CTGCTTATCAGGCCTACGATCCTTCTGATTTAAGTACAGCTGGAAAGTATTATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp AACAGGGTAATCTTTACTGCATCAAATTCCCAAAACTACGCCTTTGAAGTAAGTACACACGGTACACAGTaGAAGGCTGGTATACATTTC +
Preference number: 4 (lower is better)
Translates to: NRVIFTASNSQNYAFEVSTHGTQ*KAGIHF
Trigger: GAAATGTATACCAGCCTTTCACTGTGTACCGTGTGT...ACTTACTTCAAAGGCGTAGTTTTGGGAATTTGATGCAGTAAAGATTACCCTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR GCA 90 bp GAAATACAACTGCTTGCAACAGGAGGATCAGACAGATCATCTTTCACATCAGTCGAGTTAATGGCTTCTTaGTCGTGTACTGAATTTTTC +
Preference number: 4 (lower is better)
Translates to: EIQLLATGGSDRSSFTSVELMAS*SCTEFF
Trigger: GAAAAATTCAGTACACGAGCAAGAAGCCATTAACTC...GACTGATGTGAAAGATGATCTGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
CDS-3UTR GCA 90 bp AATCTGAAAGTTGTGGACTACGTGGAGACTTCTCAGAAATACAACTGCTTGCAATTTGCTAGATTACTCTaGCCCTTTCCATCCTCTAAA +
Preference number: 4 (lower is better)
Translates to: NLKVVDYVETSQKYNCLQFARLL*PFPSSK
Trigger: TTTAGAGGATGGAAAGGGGCAGAGTAATCTAGCAAA...TTGCAAGCAGTTGTATTTCTGAGAAGTCTCCACGTAGTCCACAACTTTCAGATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298260.8
CDS-3UTR CCA 90 bp TGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTGAATATATTCCCTCCCTAATAATGGGTAATTTGTaGATACCAAAGCTATGCTGT +
Preference number: 4 (lower is better)
Translates to: WENSRIWSLVHFEYIPSLIMGNL*IPKLCC
Trigger: ACAGCATAGCTTTGGTATCCACAAATTACCCATTAT...TAGGGAGGGAATATATTCAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp CAGGGCAATGTGAATGTTAAAATCGGTCCAGCTCGGCTTTCATCTCATTTTGTTACTTGTCCTACTTCCTaGTACTACTTAAACCATTCT +
Preference number: 4 (lower is better)
Translates to: QGNVNVKIGPARLSSHFVTCPTS*YYLNHS
Trigger: AGAATGGTTTAAGTAGTACCAGGAAGTAGGACAAGT...AACAAAATGAGATGAAAGCCGAGCTGGACCGATTTTAACATTCACATTGCCCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000462482.1
CDS-3UTR CCA 90 bp TCTCAGAAATACAACTGCTTGCAACAGGAGGATCAGACAGATCATCTTTCACATTGTCTCTACCTCCAATaGTCACAGTATATAGTTACC +
Preference number: 4 (lower is better)
Translates to: SQKYNCLQQEDQTDHLSHCLYLQ*SQYIVT
Trigger: GGTAACTATATACTGTGACCATTGGAGGTAGAGACA...ATGTGAAAGATGATCTGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTCTGAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298260.8
CDS-3UTR CCA 90 bp TCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAAGTAAAACCAGGATTTGGTCCTTaGTACACTTTGAATATATTC +
Preference number: 4 (lower is better)
Translates to: SCCLQTATASSDSTEQVKPGFGP*YTLNIF
Trigger: GAATATATTCAAAGTGTACCAAGGACCAAATCCTGG...TTTTACTTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp TTTCAGTTTTCTTTGTTGCTGACATCTCGGATGTTCTGTCCATGTTTAAGGAACATAATCCTTAAAGAGTaGATGACTGGGCTACATGTC +
Preference number: 4 (lower is better)
Translates to: FQFSLLLTSRMFCPCLRNIILKE*MTGLHV
Trigger: GACATGTAGCCCAGTCATTCACTCTTTAAGGATTAT...GTTCCTTAAACATGGACAGAACATCCGAGATGTCAGCAACAAAGAAAACTGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000462482.1
CDS-3UTR CCA 90 bp AACAGGGTAATCTTTACTGCATCAAATTCCCAAAACTACGCCTTTGAAGTAAGTGCTCATCCGGTTCTGTaGATTTATATACACACGGTA +
Preference number: 4 (lower is better)
Translates to: NRVIFTASNSQNYAFEVSAHPVL*IYIHTV
Trigger: TACCGTGTGTATATAAATCCACAGAACCGGATGAGC...ACTTACTTCAAAGGCGTAGTTTTGGGAATTTGATGCAGTAAAGATTACCCTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp ATGATGTTAATGTTCATGTTTGTCTTTAAAATGGGTCAACGTTTAAAGGGGGACTTCTTCCTACTTCACTaGCCTCAGTCTCCTTTGCTA +
Preference number: 4 (lower is better)
Translates to: MMLMFMFVFKMGQRLKGDFFLLH*PQSPLL
Trigger: TAGCAAAGGAGACTGAGGCCAGTGAAGTAGGAAGAA...GTCCCCCTTTAAACGTTGACCCATTTTAAAGACAAACATGAACATTAACATCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp ATGATGTTAATGTTCATGTTTGTCTTTAAAATGGGTCAACGTTTAAAGGGGGACAGTTTTCTTTGTTGCTaGCATCTCGGATGTTCTGTC +
Preference number: 4 (lower is better)
Translates to: MMLMFMFVFKMGQRLKGDSFLCC*HLGCSV
Trigger: GACAGAACATCCGAGATGTCAGCAACAAAGAAAACT...GTCCCCCTTTAAACGTTGACCCATTTTAAAGACAAACATGAACATTAACATCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000462482.1
CDS-3UTR GCA 90 bp ATGTTAATGTTCATGTTTGTCTTTAAAATGGGTCAACGTTTAAAGGGGGACAGAAGAAATACAACTGCTTaGAACAGGAGGATCAGACAG +
Preference number: 4 (lower is better)
Translates to: MLMFMFVFKMGQRLKGDRRNTTA*NRRIRQ
Trigger: CTGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTCT...TCTGTCCCCCTTTAAACGTTGACCCATTTTAAAGACAAACATGAACATTAACAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR GCA 90 bp AACAGGGTAATCTTTACTGCATCAAATTCCCAAAACTACGCCTTTGAAGTAAGTTTTGCTAGATTACTCTaGCCCTTTCCATCCTCTAAA +
Preference number: 4 (lower is better)
Translates to: NRVIFTASNSQNYAFEVSFARLL*PFPSSK
Trigger: TTTAGAGGATGGAAAGGGGCAGAGTAATCTAGCAAA...ACTTACTTCAAAGGCGTAGTTTTGGGAATTTGATGCAGTAAAGATTACCCTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp GGTATACATTTCAGAGTCAATGGCATACATAAGGCTGACTACAGCTTTACTTTGGTTCAGTTTCTGTGTTaGATAGATCCACTGGAATTT +
Preference number: 4 (lower is better)
Translates to: GIHFRVNGIHKADYSFTLVQFLC*IDPLEF
Trigger: AAATTCCAGTGGATCTATCCAACACAGAAACTGAAC...CAAAGTAAAGCTGTAGTCAGCCTTATGTATGCCATTGACTCTGAAATGTATACC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp ATGATGTTAATGTTCATGTTTGTCTTTAAAATGGGTCAACGTTTAAAGGGGGACGCTCATCCGGTTCTGTaGATTTATATACACACGGTA +
Preference number: 4 (lower is better)
Translates to: MMLMFMFVFKMGQRLKGDAHPVL*IYIHTV
Trigger: TACCGTGTGTATATAAATCCACAGAACCGGATGAGC...GTCCCCCTTTAAACGTTGACCCATTTTAAAGACAAACATGAACATTAACATCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR TCA 90 bp CAAAGCATGTGTCTGAATTTAAAACCAACGAAGTACGATCTTCAACTTCCAAATATAATCCTTAAAGAGTaGATGACTGGGCTACATGTC +
Preference number: 4 (lower is better)
Translates to: QSMCLNLKPTKYDLQLPNIILKE*MTGLHV
Trigger: GACATGTAGCCCAGTCATTCACTCTTTAAGGATTAT...ATTTGGAAGTTGAAGATCGTACTTCGTTGGTTTTAAATTCAGACACATGCTTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298260.8
CDS-3UTR CCA 90 bp GGTATACATTTCAGAGTCAATGGCATACATAAGGCTGACTACAGCTTTACTTTGATTTTTCTTGACACGTaGACTATATCCATACTTCTG +
Preference number: 4 (lower is better)
Translates to: GIHFRVNGIHKADYSFTLIFLDT*TISILL
Trigger: CAGAAGTATGGATATAGTCCACGTGTCAAGAAAAAT...CAAAGTAAAGCTGTAGTCAGCCTTATGTATGCCATTGACTCTGAAATGTATACC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp CTGAAAATTTTCACAATTAGACAACTCTGGGTCAGAGTTAATGGCTTCTTGCTCATTTTTCTTGACACGTaGACTATATCCATACTTCTG +
Preference number: 4 (lower is better)
Translates to: LKIFTIRQLWVRVNGFLLIFLDT*TISILL
Trigger: CAGAAGTATGGATATAGTCCACGTGTCAAGAAAAAT...GAGCAAGAAGCCATTAACTCTGACCCAGAGTTGTCTAATTGTGAAAATTTTCAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
CDS-3UTR CCA 90 bp ATGTTAATGTTCATGTTTGTCTTTAAAATGGGTCAACGTTTAAAGGGGGACAGAGTACCAAAGGAGAGTTaGTATATTCGGCATCACTTT +
Preference number: 4 (lower is better)
Translates to: MLMFMFVFKMGQRLKGDRVPKES*YIRHHF
Trigger: AAAGTGATGCCGAATATACCAACTCTCCTTTGGTAC...TCTGTCCCCCTTTAAACGTTGACCCATTTTAAAGACAAACATGAACATTAACAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR GCA 90 bp AACAGGGTAATCTTTACTGCATCAAATTCCCAAAACTACGCCTTTGAAGTAAGTCAGGGTAATCTTTACTaGATCAAATTCCCAAAACTA +
Preference number: 4 (lower is better)
Translates to: NRVIFTASNSQNYAFEVSQGNLY*IKFPKL
Trigger: TAGTTTTGGGAATTTGATGCAGTAAAGATTACCCTG...ACTTACTTCAAAGGCGTAGTTTTGGGAATTTGATGCAGTAAAGATTACCCTGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp AACAGGGTAATCTTTACTGCATCAAATTCCCAAAACTACGCCTTTGAAGTAAGTATTTTTCTTGACACGTaGACTATATCCATACTTCTG +
Preference number: 4 (lower is better)
Translates to: NRVIFTASNSQNYAFEVSIFLDT*TISILL
Trigger: CAGAAGTATGGATATAGTCCACGTGTCAAGAAAAAT...ACTTACTTCAAAGGCGTAGTTTTGGGAATTTGATGCAGTAAAGATTACCCTGTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CCA 90 bp AACATTATCATTGAGCCTGGATTCTGTATCTATGGCCTCCTCACTTTTATTATTGTTCAGTTTCTGTGTTaGATAGATCCACTGGAATTT +
Preference number: 4 (lower is better)
Translates to: NIIIEPGFCIYGLLTFIIVQFLC*IDPLEF
Trigger: AAATTCCAGTGGATCTATCCAACACAGAAACTGAAC...AATAATAAAAGTGAGGAGGCCATAGATACAGAATCCAGGCTCAATGATAATGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298260.8
CDS-3UTR CCA 90 bp ATGTTAATGTTCATGTTTGTCTTTAAAATGGGTCAACGTTTAAAGGGGGACAGAGTTCAGTTTCTGTGTTaGATAGATCCACTGGAATTT +
Preference number: 4 (lower is better)
Translates to: MLMFMFVFKMGQRLKGDRVQFLC*IDPLEF
Trigger: AAATTCCAGTGGATCTATCCAACACAGAAACTGAAC...TCTGTCCCCCTTTAAACGTTGACCCATTTTAAAGACAAACATGAACATTAACAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
ENST00000462482.1
CDS-3UTR CCA 90 bp ATGTTAATGTTCATGTTTGTCTTTAAAATGGGTCAACGTTTAAAGGGGGACAGACCAGGATTTGGTCCTTaGTACACTTTGAATATATTC +
Preference number: 4 (lower is better)
Translates to: MLMFMFVFKMGQRLKGDRPGFGP*YTLNIF
Trigger: GAATATATTCAAAGTGTACCAAGGACCAAATCCTGG...TCTGTCCCCCTTTAAACGTTGACCCATTTTAAAGACAAACATGAACATTAACAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
3UTR CAA 72 bp ACTGCTTTAATTGCTATTGGAGTAGCTAGGTTTGAGTaGTATTTTGATAAAAGCTGGAGAATATCTTCTGGA +
Preference number: 4 (lower is better)
Translates to: TALIAIGVARFE*YFDKSWRISSG
Trigger: TCCAGAAGATATTCTCCAGCTTTTATCAAAATACAACTCAAACCTAGCTACTCCAATAGCAATTAAAGCAGT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000298260.8
CDS-3UTR CCA 90 bp ATGTTAATGTTCATGTTTGTCTTTAAAATGGGTCAACGTTTAAAGGGGGACAGAATAATGGGTAATTTGTaGATACCAAAGCTATGCTGT +
Preference number: 4 (lower is better)
Translates to: MLMFMFVFKMGQRLKGDRIMGNL*IPKLCC
Trigger: ACAGCATAGCTTTGGTATCCACAAATTACCCATTAT...TCTGTCCCCCTTTAAACGTTGACCCATTTTAAAGACAAACATGAACATTAACAT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CAA 90 bp AACAGTGCACAGGAGGGCCCCTGGCCCAGGATGAGCCCTCAGAACCTTTTAGAGTCCTGGTTCCAACTGTaGAGACCTGTCTCTACCTCC +
Preference number: 5 (lower is better)
Translates to: NSAQEGPWPRMSPQNLLESWFQL*RPVSTS
Trigger: GGAGGTAGAGACAGGTCTCAACAGTTGGAACCAGGA...CTCTAAAAGGTTCTGAGGGCTCATCCTGGGCCAGGGGCCCTCCTGTGCACTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CAA 90 bp TGGCTGGCAGCAATGTCTCTCTGGCCAGAAGGTCAGGGGCGGCCTCATCTGAGTGAATTTCAGTTTTCTTaGTTGCTGACATCTCGGATG +
Preference number: 5 (lower is better)
Translates to: WLAAMSLWPEGQGRPHLSEFQFS*LLTSRM
Trigger: CATCCGAGATGTCAGCAACAAAGAAAACTGAAATTC...ACTCAGATGAGGCCGCCCCTGACCTTCTGGCCAGAGAGACATTGCTGCCAGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000462482.1
CDS-3UTR CAA 90 bp AGCTGGCTGGCAGCAATGTCTCTCTGGCCAGAAGGTCAGGGGCGGCCTCATCTGGAATCATCACTCTCCTaGAAATACTTTCTTCCTACT +
Preference number: 5 (lower is better)
Translates to: SWLAAMSLWPEGQGRPHLESSLS*KYFLPT
Trigger: AGTAGGAAGAAAGTATTTCAAGGAGAGTGATGATTC...CAGATGAGGCCGCCCCTGACCTTCTGGCCAGAGAGACATTGCTGCCAGCCAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CAA 90 bp CTGGCCTCAGTCTCCTTTGCTAGATTACTCTGCCCCTTTCCATCCTCTAAAGTTCAGAAATACAACTGCTaGCAACAGGAGGATCAGACA +
Preference number: 5 (lower is better)
Translates to: LASVSFARLLCPFPSSKVQKYNC*QQEDQT
Trigger: TGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTCTG...AACTTTAGAGGATGGAAAGGGGCAGAGTAATCTAGCAAAGGAGACTGAGGCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CAA 90 bp GGTTTGGTAGAACTTGGGATACGATGTACCGCTCAAGTCCAAAATCTGAAAGTTTCCTGGTTCCAACTGTaGAGACCTGTCTCTACCTCC +
Preference number: 5 (lower is better)
Translates to: GLVELGIRCTAQVQNLKVSWFQL*RPVSTS
Trigger: GGAGGTAGAGACAGGTCTCAACAGTTGGAACCAGGA...AACTTTCAGATTTTGGACTTGAGCGGTACATCGTATCCCAAGTTCTACCAAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298260.8
CDS-3UTR CAA 90 bp TGGTGTTCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAACAGAAATACAACTGCTaGCAACAGGAGGATCAGACA +
Preference number: 5 (lower is better)
Translates to: WCSCCLQTATASSDSTEQQKYNC*QQEDQT
Trigger: TGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTCTG...TTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGAACACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CAA 90 bp CTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAATCTCCCTCTTTTGGTGTTCCTGTTGTTaGCAAACAGCAACTGCATCT +
Preference number: 5 (lower is better)
Translates to: LPPMVTVYSYPGLEISLFWCSCC*QTATAS
Trigger: AGATGCAGTTGCTGTTTGCAAACAACAGGAACACCA...AAAGAGGGAGATTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CAA 90 bp TACTTAAATCAGAAGGATCGTAGGCCTGATAAGCAGGTCAACCTGAAGCTACCAGGTACCAAAGGAGAGTaGGTATATTCGGCATCACTT +
Preference number: 5 (lower is better)
Translates to: YLNQKDRRPDKQVNLKLPGTKGE*VYSASL
Trigger: AAGTGATGCCGAATATACCAACTCTCCTTTGGTACC...TGGTAGCTTCAGGTTGACCTGCTTATCAGGCCTACGATCCTTCTGATTTAAGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CAA 90 bp ACTGGTGTTCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCTGTTCAGTTTCTGTGTaGGATAGATCCACTGGAATT +
Preference number: 5 (lower is better)
Translates to: TGVPVVCKQQLHLQTALSCSVSV*DRSTGI
Trigger: AATTCCAGTGGATCTATCCAACACAGAAACTGAACA...GCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGAACACCAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CAA 90 bp AAAGTTGTGGACTACGTGGAGACTTCTCAGAAATACAACTGCTTGCAACAGGAGTGGTGTTCCTGTTGTTaGCAAACAGCAACTGCATCT +
Preference number: 5 (lower is better)
Translates to: KVVDYVETSQKYNCLQQEWCSCC*QTATAS
Trigger: AGATGCAGTTGCTGTTTGCAAACAACAGGAACACCA...CTCCTGTTGCAAGCAGTTGTATTTCTGAGAAGTCTCCACGTAGTCCACAACTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000298260.8
CDS-3UTR CAA 90 bp CACAGTATGCTAGGTCCTTATTTTCTCATTGGCTGTAATTTGACAAGTTCTCCATCCTGGTTCCAACTGTaGAGACCTGTCTCTACCTCC +
Preference number: 5 (lower is better)
Translates to: HSMLGPYFLIGCNLTSSPSWFQL*RPVSTS
Trigger: GGAGGTAGAGACAGGTCTCAACAGTTGGAACCAGGA...TGGAGAACTTGTCAAATTACAGCCAATGAGAAAATAAGGACCTAGCATACTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CAA 90 bp CCTTTTAGAGAGAGTGAAATTCAGGGTCTACTGGGTGTCCAAGCTGCAGAGTGGTCCAGGATTTGGTCCTaGGTACACTTTGAATATATT +
Preference number: 5 (lower is better)
Translates to: PFRESEIQGLLGVQAAEWSRIWS*VHFEYI
Trigger: AATATATTCAAAGTGTACCAAGGACCAAATCCTGGA...CCACTCTGCAGCTTGGACACCCAGTAGACCCTGAATTTCACTCTCTCTAAAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CAA 90 bp CAGGGCAATGTGAATGTTAAAATCGGTCCAGCTCGGCTTTCATCTCATTTTGTTGGTACCAAAGGAGAGTaGGTATATTCGGCATCACTT +
Preference number: 5 (lower is better)
Translates to: QGNVNVKIGPARLSSHFVGTKGE*VYSASL
Trigger: AAGTGATGCCGAATATACCAACTCTCCTTTGGTACC...AACAAAATGAGATGAAAGCCGAGCTGGACCGATTTTAACATTCACATTGCCCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000314759.6
CDS-3UTR CAA 90 bp TCTCAGAAATACAACTGCTTGCAACAGGAGGATCAGACAGATCATCTTTCACATCAGAAATACAACTGCTaGCAACAGGAGGATCAGACA +
Preference number: 5 (lower is better)
Translates to: SQKYNCLQQEDQTDHLSHQKYNC*QQEDQT
Trigger: TGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTCTG...ATGTGAAAGATGATCTGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTCTGAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
CDS-3UTR CAA 90 bp CTACCTCCAATGGTCACAGTATATAGTTACCCAGGCCTGGAAATCTCCCTCTTTGCAAAAACATTATCATaGAGCCTGGATTCTGTATCT +
Preference number: 5 (lower is better)
Translates to: LPPMVTVYSYPGLEISLFAKTLS*SLDSVS
Trigger: AGATACAGAATCCAGGCTCAATGATAATGTTTTTGC...AAAGAGGGAGATTTCCAGGCCTGGGTAACTATATACTGTGACCATTGGAGGTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CAA 90 bp ACTACGTGGAGACTTCTCAGAAATACAACTGCTTGCAACAGGAGGATCAGACAGGCAAAAACATTATCATaGAGCCTGGATTCTGTATCT +
Preference number: 5 (lower is better)
Translates to: TTWRLLRNTTACNRRIRQAKTLS*SLDSVS
Trigger: AGATACAGAATCCAGGCTCAATGATAATGTTTTTGC...CTGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTCTGAGAAGTCTCCACGTAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
CDS-3UTR CAA 90 bp AGTTGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTGAATATATTCCCTCCTGTTCAGTTTCTGTGTaGGATAGATCCACTGGAATT +
Preference number: 5 (lower is better)
Translates to: SWENSRIWSLVHFEYIPSCSVSV*DRSTGI
Trigger: AATTCCAGTGGATCTATCCAACACAGAAACTGAACA...GGAGGGAATATATTCAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCAACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CAA 90 bp GGAGGGTTTGGTAGAACTTGGGATACGATGTACCGCTCAAGTCCAAAATCTGAATCCAGGATTTGGTCCTaGGTACACTTTGAATATATT +
Preference number: 5 (lower is better)
Translates to: GGFGRTWDTMYRSSPKSESRIWS*VHFEYI
Trigger: AATATATTCAAAGTGTACCAAGGACCAAATCCTGGA...TTCAGATTTTGGACTTGAGCGGTACATCGTATCCCAAGTTCTACCAAACCCTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000298260.8
CDS-3UTR CAA 90 bp TGGTGTTCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAAGAATCATCACTCTCCTaGAAATACTTTCTTCCTACT +
Preference number: 5 (lower is better)
Translates to: WCSCCLQTATASSDSTEQESSLS*KYFLPT
Trigger: AGTAGGAAGAAAGTATTTCAAGGAGAGTGATGATTC...TTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGAACACCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CAA 90 bp GGTATACATTTCAGAGTCAATGGCATACATAAGGCTGACTACAGCTTTACTTTGCAGAAATACAACTGCTaGCAACAGGAGGATCAGACA +
Preference number: 5 (lower is better)
Translates to: GIHFRVNGIHKADYSFTLQKYNC*QQEDQT
Trigger: TGTCTGATCCTCCTGTTGCAAGCAGTTGTATTTCTG...CAAAGTAAAGCTGTAGTCAGCCTTATGTATGCCATTGACTCTGAAATGTATACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CAA 90 bp GTAGAACTTGGGATACGATGTACCGCTCAAGTCCAAAATCTGAAAGTTGTGGACTTTACTAGTGATTGTTaGGTAGGTGGGGTTACAATT +
Preference number: 5 (lower is better)
Translates to: VELGIRCTAQVQNLKVVDFTSDC*VGGVTI
Trigger: AATTGTAACCCCACCTACCAAACAATCACTAGTAAA...GTCCACAACTTTCAGATTTTGGACTTGAGCGGTACATCGTATCCCAAGTTCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000465471.5
CDS-3UTR CAA 90 bp TGGGAGAACTCCAGGATTTGGTCCTTGGTACACTTTGAATATATTCCCTCCCTAGCAAAAACATTATCATaGAGCCTGGATTCTGTATCT +
Preference number: 5 (lower is better)
Translates to: WENSRIWSLVHFEYIPSLAKTLS*SLDSVS
Trigger: AGATACAGAATCCAGGCTCAATGATAATGTTTTTGC...TAGGGAGGGAATATATTCAAAGTGTACCAAGGACCAAATCCTGGAGTTCTCCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CAA 90 bp GTAGAACTTGGGATACGATGTACCGCTCAAGTCCAAAATCTGAAAGTTGTGGACGTAGCTAGGTTTGAGTaGTATTTTGATAAAAGCTGG +
Preference number: 5 (lower is better)
Translates to: VELGIRCTAQVQNLKVVDVARFE*YFDKSW
Trigger: CCAGCTTTTATCAAAATACAACTCAAACCTAGCTAC...GTCCACAACTTTCAGATTTTGGACTTGAGCGGTACATCGTATCCCAAGTTCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000298260.8
CDS-3UTR CAA 90 bp TCCTGTTGTTTGCAAACAGCAACTGCATCTTCAGACAGCACTGAGCAAGTAAAATGTTCAGTTTCTGTGTaGGATAGATCCACTGGAATT +
Preference number: 5 (lower is better)
Translates to: SCCLQTATASSDSTEQVKCSVSV*DRSTGI
Trigger: AATTCCAGTGGATCTATCCAACACAGAAACTGAACA...TTTTACTTGCTCAGTGCTGTCTGAAGATGCAGTTGCTGTTTGCAAACAACAGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CAA 90 bp GGTATACATTTCAGAGTCAATGGCATACATAAGGCTGACTACAGCTTTACTTTGTGGTGTTCCTGTTGTTaGCAAACAGCAACTGCATCT +
Preference number: 5 (lower is better)
Translates to: GIHFRVNGIHKADYSFTLWCSCC*QTATAS
Trigger: AGATGCAGTTGCTGTTTGCAAACAACAGGAACACCA...CAAAGTAAAGCTGTAGTCAGCCTTATGTATGCCATTGACTCTGAAATGTATACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CAA 90 bp GGCAATGTGAATGTTAAAATCGGTCCAGCTCGGCTTTCATCTCATTTTGTTCAGGTAGCTAGGTTTGAGTaGTATTTTGATAAAAGCTGG +
Preference number: 5 (lower is better)
Translates to: GNVNVKIGPARLSSHFVQVARFE*YFDKSW
Trigger: CCAGCTTTTATCAAAATACAACTCAAACCTAGCTAC...CTGAACAAAATGAGATGAAAGCCGAGCTGGACCGATTTTAACATTCACATTGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000314759.6
CDS-3UTR CAA 90 bp AACATTATCATTGAGCCTGGATTCTGTATCTATGGCCTCCTCACTTTTATTATTGGACAGGTCCCCCATTaGACTTTCAAGGAACAATCA +
Preference number: 5 (lower is better)
Translates to: NIIIEPGFCIYGLLTFIIGQVPH*TFKEQS
Trigger: TGATTGTTCCTTGAAAGTCAAATGGGGGACCTGTCC...AATAATAAAAGTGAGGAGGCCATAGATACAGAATCCAGGCTCAATGATAATGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000298260.8
CDS-3UTR CAA 90 bp ATGATGTTAATGTTCATGTTTGTCTTTAAAATGGGTCAACGTTTAAAGGGGGACGGACAGGTCCCCCATTaGACTTTCAAGGAACAATCA +
Preference number: 5 (lower is better)
Translates to: MMLMFMFVFKMGQRLKGDGQVPH*TFKEQS
Trigger: TGATTGTTCCTTGAAAGTCAAATGGGGGACCTGTCC...GTCCCCCTTTAAACGTTGACCCATTTTAAAGACAAACATGAACATTAACATCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CAA 90 bp ATGTTAATGTTCATGTTTGTCTTTAAAATGGGTCAACGTTTAAAGGGGGACAGAGGTACCAAAGGAGAGTaGGTATATTCGGCATCACTT +
Preference number: 5 (lower is better)
Translates to: MLMFMFVFKMGQRLKGDRGTKGE*VYSASL
Trigger: AAGTGATGCCGAATATACCAACTCTCCTTTGGTACC...TCTGTCCCCCTTTAAACGTTGACCCATTTTAAAGACAAACATGAACATTAACAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CAA 90 bp AACAGGGTAATCTTTACTGCATCAAATTCCCAAAACTACGCCTTTGAAGTAAGTGAATTTCAGTTTTCTTaGTTGCTGACATCTCGGATG +
Preference number: 5 (lower is better)
Translates to: NRVIFTASNSQNYAFEVSEFQFS*LLTSRM
Trigger: CATCCGAGATGTCAGCAACAAAGAAAACTGAAATTC...ACTTACTTCAAAGGCGTAGTTTTGGGAATTTGATGCAGTAAAGATTACCCTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000314759.6
CDS-3UTR CAA 90 bp AATGTTAAAATCGGTCCAGCTCGGCTTTCATCTCATTTTGTTCAGTTTCTGTGTGAATCATCACTCTCCTaGAAATACTTTCTTCCTACT +
Preference number: 5 (lower is better)
Translates to: NVKIGPARLSSHFVQFLCESSLS*KYFLPT
Trigger: AGTAGGAAGAAAGTATTTCAAGGAGAGTGATGATTC...ACACAGAAACTGAACAAAATGAGATGAAAGCCGAGCTGGACCGATTTTAACATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000298260.8
ENST00000314759.6
CDS-3UTR CAA 90 bp TTTCAGTTTTCTTTGTTGCTGACATCTCGGATGTTCTGTCCATGTTTAAGGAACGTAGCTAGGTTTGAGTaGTATTTTGATAAAAGCGCT +
Preference number: 5 (lower is better)
Translates to: FQFSLLLTSRMFCPCLRNVARFE*YFDKSA
Trigger: AGCGCTTTTATCAAAATACAACTCAAACCTAGCTAC...GTTCCTTAAACATGGACAGAACATCCGAGATGTCAGCAACAAAGAAAACTGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000462482.1
CDS-3UTR CAA 90 bp ATGTTAATGTTCATGTTTGTCTTTAAAATGGGTCAACGTTTAAAGGGGGACAGAGAATTTCAGTTTTCTTaGTTGCTGACATCTCGGATG +
Preference number: 5 (lower is better)
Translates to: MLMFMFVFKMGQRLKGDREFQFS*LLTSRM
Trigger: CATCCGAGATGTCAGCAACAAAGAAAACTGAAATTC...TCTGTCCCCCTTTAAACGTTGACCCATTTTAAAGACAAACATGAACATTAACAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000462482.1
CDS-3UTR CAA 90 bp ATGTTAATGTTCATGTTTGTCTTTAAAATGGGTCAACGTTTAAAGGGGGACAGATGTTCAGTTTCTGTGTaGGATAGATCCACTGGAATT +
Preference number: 5 (lower is better)
Translates to: MLMFMFVFKMGQRLKGDRCSVSV*DRSTGI
Trigger: AATTCCAGTGGATCTATCCAACACAGAAACTGAACA...TCTGTCCCCCTTTAAACGTTGACCCATTTTAAAGACAAACATGAACATTAACAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
ENST00000462482.1
CDS-3UTR CAA 90 bp ATGCTAGGTCCTTATTTTCTCATTGGCTGTAATTTGACAAGTTCTCCAAAAGCATCCAGGATTTGGTCCTaGGTACACTTTGAATATATT +
Preference number: 5 (lower is better)
Translates to: MLGPYFLIGCNLTSSPKASRIWS*VHFEYI
Trigger: AATATATTCAAAGTGTACCAAGGACCAAATCCTGGA...TGCTTTTGGAGAACTTGTCAAATTACAGCCAATGAGAAAATAAGGACCTAGCAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CAA 90 bp ATGATGTTAATGTTCATGTTTGTCTTTAAAATGGGTCAACGTTTAAAGGGGGACGCAAAAACATTATCATaGAGCCTGGATTCTGTATCT +
Preference number: 5 (lower is better)
Translates to: MMLMFMFVFKMGQRLKGDAKTLS*SLDSVS
Trigger: AGATACAGAATCCAGGCTCAATGATAATGTTTTTGC...GTCCCCCTTTAAACGTTGACCCATTTTAAAGACAAACATGAACATTAACATCAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000298260.8
ENST00000314759.6
ENST00000400018.7
CDS-3UTR CAA 90 bp ATGTTAATGTTCATGTTTGTCTTTAAAATGGGTCAACGTTTAAAGGGGGACAGAGGTTTGAGTTGTATTTaGATAAAAGCGCTTTCCTCT +
Preference number: 5 (lower is better)
Translates to: MLMFMFVFKMGQRLKGDRGLSCI*IKALSS
Trigger: AGAGGAAAGCGCTTTTATCAAAATACAACTCAAACC...TCTGTCCCCCTTTAAACGTTGACCCATTTTAAAGACAAACATGAACATTAACAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000462482.1
CDS CAA 72 bp ACTGCTTTAATTGCTATTGGAGTAGCTAGGTTTGAGTaGTATTTTGATAAAAGCGCTTTCCTCTCCGTCCAG +
Preference number: 6 (lower is better)
Translates to: TALIAIGVARFE*YFDKSAFLSVQ
Trigger: CTGGACGGAGAGGAAAGCGCTTTTATCAAAATACAACTCAAACCTAGCTACTCCAATAGCAATTAAAGCAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000462482.1