Pregenerated sensors for SKA2 (Homo sapiens)
Ensembl gene IDs: ENSG00000182628Ensembl transcript IDs: ENST00000330137.12, ENST00000437036.6, ENST00000578519.5, ENST00000580541.1, ENST00000583976.1
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGATATGACTCCAAAGCCCAATCTTCACTACAAAACTGCAATACCTaGTTTCCCTCTCCCCCACTTAGCATAGTTTCAGCATTTCCCAGA | + |
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Preference number: 1 (lower is better) Translates to: RYDSKAQSSLQNCNT*FPSPPLSIVSAFPR Trigger: TCTGGGAAATGCTGAAACTATGCTAAGTGGGGGAGAGGGAAAGCAGGTATTGCAGTTTTGTAGTGAAGATTGGGCTTTGGAGTCATATCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000330137.12 |
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| 3UTR GCA 90 bp | TTACATCTCAGATATGACTCCAAAGCCCAATCTTCACTACAAAACTaGAATACCTGCTTTCCCTCTCCCCCACTTAGCATAGTTTCAGCA | + |
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Preference number: 1 (lower is better) Translates to: LHLRYDSKAQSSLQN*NTCFPSPPLSIVSA Trigger: TGCTGAAACTATGCTAAGTGGGGGAGAGGGAAAGCAGGTATTGCAGTTTTGTAGTGAAGATTGGGCTTTGGAGTCATATCTGAGATGTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000330137.12 |
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| 3UTR CCA 90 bp | TTTAAAGGGAAATTGACACATACATATAACACACTCACGCAAAACTaGCAAGTAGCAGATAAGTGCTCTTCTAATTTCAGTTTCCTAGCT | + |
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Preference number: 1 (lower is better) Translates to: FKGKLTHTYNTLTQN*QVADKCSSNFSFLA Trigger: AGCTAGGAAACTGAAATTAGAAGAGCACTTATCTGCTACTTGCCAGTTTTGCGTGAGTGTGTTATATGTATGTGTCAATTTCCCTTTAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000330137.12 |
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| 3UTR-3UTR GCA 90 bp | CCTTCCAAACATCCTGACACTCAAAAGTTAAGTGATCTGCACAGGGTCATAGCTCAAAACTGCAATACCTaGTTTCCCTCTCCCCCACTT | + |
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Preference number: 2 (lower is better) Translates to: PSKHPDTQKLSDLHRVIAQNCNT*FPSPPL Trigger: AAGTGGGGGAGAGGGAAAGCAGGTATTGCAGTTTTG...AGCTATGACCCTGTGCAGATCACTTAACTTTTGAGTGTCAGGATGTTTGGAAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000330137.12 |
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| 3UTR GCA 72 bp | TCCAAAGCCCAATCTTCACTACAAAACTGCAATACCTaGTTTCCCTCTCCCCCACTTAGCATAGTTTCAGCA | + |
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Preference number: 3 (lower is better) Translates to: SKAQSSLQNCNT*FPSPPLSIVSA Trigger: TGCTGAAACTATGCTAAGTGGGGGAGAGGGAAAGCAGGTATTGCAGTTTTGTAGTGAAGATTGGGCTTTGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000330137.12 |
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| CDS-3UTR TCA 90 bp | AACTGGATTTTTCTGTATTTCCACCTACGCAGGAGACTGAGGTGGGAGGATCACGGTGGGAGGATCACCTaGGCCCAGGAGGTCAAAGCT | + |
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Preference number: 4 (lower is better) Translates to: NWIFLYFHLRRRLRWEDHGGRIT*AQEVKA Trigger: AGCTTTGACCTCCTGGGCTCAGGTGATCCTCCCACC...GTGATCCTCCCACCTCAGTCTCCTGCGTAGGTGGAAATACAGAAAAATCCAGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000578519.5 |
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| CDS-3UTR TCA 90 bp | CCTTCCAAACATCCTGACACTCAAAAGTTAAGTGATCTGCACAGGGTCATAGCTGGGCAGAGAACTGCTTaGACCTGGGAGGTGGAGGTT | + |
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Preference number: 4 (lower is better) Translates to: PSKHPDTQKLSDLHRVIAGQRTA*TWEVEV Trigger: AACCTCCACCTCCCAGGTTCAAGCAGTTCTCTGCCC...AGCTATGACCCTGTGCAGATCACTTAACTTTTGAGTGTCAGGATGTTTGGAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000330137.12 |
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| CDS-3UTR TCA 90 bp | CCTTCCAAACATCCTGACACTCAAAAGTTAAGTGATCTGCACAGGGTCATAGCTGAGGTTGCAGTGAGCTaGGAGCGTACCACTGCATTC | + |
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Preference number: 4 (lower is better) Translates to: PSKHPDTQKLSDLHRVIAEVAVS*ERTTAF Trigger: GAATGCAGTGGTACGCTCTCAGCTCACTGCAACCTC...AGCTATGACCCTGTGCAGATCACTTAACTTTTGAGTGTCAGGATGTTTGGAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000330137.12 |
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| CDS-3UTR CCA 90 bp | CCTTCCAAACATCCTGACACTCAAAAGTTAAGTGATCTGCACAGGGTCATAGCTAGCTACTCGGGAGGGTaGGGCAGAGAACTGCTTGAA | + |
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Preference number: 4 (lower is better) Translates to: PSKHPDTQKLSDLHRVIASYSGG*GRELLE Trigger: TTCAAGCAGTTCTCTGCCCCACCCTCCCGAGTAGCT...AGCTATGACCCTGTGCAGATCACTTAACTTTTGAGTGTCAGGATGTTTGGAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000330137.12 |
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| CDS-3UTR TCA 90 bp | GAGTGTAACTGGATTTTTCTGTATTTCCACCTACGCAGGAGACTGAGGTGGGAGTTCTTTAGTCAGTGGTaGCAGCTCCAGGTCTGTTTG | + |
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Preference number: 4 (lower is better) Translates to: ECNWIFLYFHLRRRLRWEFFSQW*QLQVCL Trigger: CAAACAGACCTGGAGCTGTCACCACTGACTAAAGAA...CTCCCACCTCAGTCTCCTGCGTAGGTGGAAATACAGAAAAATCCAGTTACACTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000578519.5 |
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| CDS-3UTR GCA 90 bp | TACAGGTCACATAAAAGCAGTCTCAACAATAATGTGACCACATGTGCAATCAACCTGAGAGCGTACCACTaGATTCCAGCCTGGGCAACA | + |
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Preference number: 4 (lower is better) Translates to: YRSHKSSLNNNVTTCAINLRAYH*IPAWAT Trigger: TGTTGCCCAGGCTGGAATGCAGTGGTACGCTCTCAG...GTTGATTGCACATGTGGTCACATTATTGTTGAGACTGCTTTTATGTGACCTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000330137.12 |
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| CDS-3UTR TCA 90 bp | TACAGGTCACATAAAAGCAGTCTCAACAATAATGTGACCACATGTGCAATCAACTTCTTTAGTCAGTGGTaGCAGCTCCAGGTCTGTTTG | + |
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Preference number: 4 (lower is better) Translates to: YRSHKSSLNNNVTTCAINFFSQW*QLQVCL Trigger: CAAACAGACCTGGAGCTGTCACCACTGACTAAAGAA...GTTGATTGCACATGTGGTCACATTATTGTTGAGACTGCTTTTATGTGACCTGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000330137.12 |
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| CDS-3UTR TCA 90 bp | GGTTCTGTGGGAGACTACAGGTCACATAAAAGCAGTCTCAACAATAATGTGACCGTCTCAACAATAATGTaGCCACATGTGCAATCAACA | + |
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Preference number: 4 (lower is better) Translates to: GSVGDYRSHKSSLNNNVTVSTIM*PHVQST Trigger: TGTTGATTGCACATGTGGTCACATTATTGTTGAGAC...GGTCACATTATTGTTGAGACTGCTTTTATGTGACCTGTAGTCTCCCACAGAACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000330137.12 |
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| CDS-3UTR TCA 90 bp | TACAACAGGGACAGTCTAAAACAGCATCAGAAAGCAAGTTCATGCTGTTCAACACACTCAAAAGTTAAGTaGTCTGCACAGGGTCATAGC | + |
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Preference number: 4 (lower is better) Translates to: YNRDSLKQHQKASSCCSTHSKVK*SAQGHS Trigger: GCTATGACCCTGTGCAGATCACTTAACTTTTGAGTG...TGTTGAACAGCATGAACTTGCTTTCTGATGCTGTTTTAGACTGTCCCTGTTGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000330137.12 |
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| CDS-3UTR GCA 90 bp | TACAGGTCACATAAAAGCAGTCTCAACAATAATGTGACCACATGTGCAATCAACCAAAACTGCAATACCTaGTTTCCCTCTCCCCCACTT | + |
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Preference number: 4 (lower is better) Translates to: YRSHKSSLNNNVTTCAINQNCNT*FPSPPL Trigger: AAGTGGGGGAGAGGGAAAGCAGGTATTGCAGTTTTG...GTTGATTGCACATGTGGTCACATTATTGTTGAGACTGCTTTTATGTGACCTGTA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000330137.12 |
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| CDS-3UTR CCA 90 bp | TACAACAGGGACAGTCTAAAACAGCATCAGAAAGCAAGTTCATGCTGTTCAACAACACTCACGCAAAACTaGCAAGTAGCAGATAAGTGC | + |
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Preference number: 4 (lower is better) Translates to: YNRDSLKQHQKASSCCSTTLTQN*QVADKC Trigger: GCACTTATCTGCTACTTGCCAGTTTTGCGTGAGTGT...TGTTGAACAGCATGAACTTGCTTTCTGATGCTGTTTTAGACTGTCCCTGTTGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000330137.12 |
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| CDS-3UTR CCA 90 bp | TACAACAGGGACAGTCTAAAACAGCATCAGAAAGCAAGTTCATGCTGTTCAACAGGTAGGGGATTTTATTaGAAATACGGATCTAGAGCT | + |
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Preference number: 4 (lower is better) Translates to: YNRDSLKQHQKASSCCSTGRGFY*KYGSRA Trigger: AGCTCTAGATCCGTATTTCCAATAAAATCCCCTACC...TGTTGAACAGCATGAACTTGCTTTCTGATGCTGTTTTAGACTGTCCCTGTTGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000330137.12 |
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| CDS-3UTR GCA 90 bp | TACAGGTCACATAAAAGCAGTCTCAACAATAATGTGACCACATGTGCAATCAACTCTTCACTACAAAACTaGAATACCTGCTTTCCCTCT | + |
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Preference number: 4 (lower is better) Translates to: YRSHKSSLNNNVTTCAINSSLQN*NTCFPS Trigger: AGAGGGAAAGCAGGTATTGCAGTTTTGTAGTGAAGA...GTTGATTGCACATGTGGTCACATTATTGTTGAGACTGCTTTTATGTGACCTGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000330137.12 |
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| CDS CCA 90 bp | AGACGGTGGCGGCTCCCTTTGGTGCAGGAGGAGGGAACTCGACTCTaGTCCAGCCTCCGCCGCCCGGAGTTTCCGGCGACTCCAAATTGT | + |
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Preference number: 5 (lower is better) Translates to: RRWRLPLVQEEGTRL*SSLRRPEFPATPNC Trigger: ACAATTTGGAGTCGCCGGAAACTCCGGGCGGCGGAGGCTGGACCAGAGTCGAGTTCCCTCCTCCTGCACCAAAGGGAGCCGCCACCGTCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000437036.6 ENST00000580541.1 ENST00000583976.1 |
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| CDS CCA 90 bp | TCAGACTCAGCTTTCTGGAACCGAGGCGGTTTAGACACCAGACGGTaGCGGCTCCCTTTGGTGCAGGAGGAGGGAACTCGACTCTGGTCC | + |
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Preference number: 5 (lower is better) Translates to: SDSAFWNRGGLDTRR*RLPLVQEEGTRLWS Trigger: GGACCAGAGTCGAGTTCCCTCCTCCTGCACCAAAGGGAGCCGCCACCGTCTGGTGTCTAAACCGCCTCGGTTCCAGAAAGCTGAGTCTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000437036.6 ENST00000583976.1 |
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| CDS CCA 90 bp | TCTTTAGTCAGTGGTGACAGCCGAGGCGGTTTAGACACCAGACGGTaGCGGCTCCCTTTGGTGCAGGAGGAGGGAACTCGACTCTGGTCC | + |
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Preference number: 5 (lower is better) Translates to: SLVSGDSRGGLDTRR*RLPLVQEEGTRLWS Trigger: GGACCAGAGTCGAGTTCCCTCCTCCTGCACCAAAGGGAGCCGCCACCGTCTGGTGTCTAAACCGCCTCGGCTGTCACCACTGACTAAAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580541.1 |
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| CDS-3UTR CAA 90 bp | CCTTCCAAACATCCTGACACTCAAAAGTTAAGTGATCTGCACAGGGTCATAGCTAGATCTGCCTCTACTTaGAACAGTTTCCTTATTGCC | + |
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Preference number: 5 (lower is better) Translates to: PSKHPDTQKLSDLHRVIARSAST*NSFLIA Trigger: GGCAATAAGGAAACTGTTCAAAGTAGAGGCAGATCT...AGCTATGACCCTGTGCAGATCACTTAACTTTTGAGTGTCAGGATGTTTGGAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000330137.12 |
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| CDS-3UTR CAA 90 bp | TACAGGTCACATAAAAGCAGTCTCAACAATAATGTGACCACATGTGCAATCAACCTGGACATGTTTAACTaGAATATTCAGGTAGGGGAT | + |
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Preference number: 5 (lower is better) Translates to: YRSHKSSLNNNVTTCAINLDMFN*NIQVGD Trigger: ATCCCCTACCTGAATATTCAAGTTAAACATGTCCAG...GTTGATTGCACATGTGGTCACATTATTGTTGAGACTGCTTTTATGTGACCTGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000330137.12 |
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| CDS CCA 72 bp | AGTGGTGACAGCCGAGGCGGTTTAGACACCAGACGGTaGCGGCTCCCTTTGGTGCAGGAGGAGGGAACTCGA | + |
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Preference number: 6 (lower is better) Translates to: SGDSRGGLDTRR*RLPLVQEEGTR Trigger: TCGAGTTCCCTCCTCCTGCACCAAAGGGAGCCGCCACCGTCTGGTGTCTAAACCGCCTCGGCTGTCACCACT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580541.1 |
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| CDS CCA 72 bp | GCTTTCTGGAACCGAGGCGGTTTAGACACCAGACGGTaGCGGCTCCCTTTGGTGCAGGAGGAGGGAACTCGA | + |
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Preference number: 6 (lower is better) Translates to: AFWNRGGLDTRR*RLPLVQEEGTR Trigger: TCGAGTTCCCTCCTCCTGCACCAAAGGGAGCCGCCACCGTCTGGTGTCTAAACCGCCTCGGTTCCAGAAAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000437036.6 ENST00000583976.1 |
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