RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SHOX2 (Homo sapiens)

Ensembl gene IDs: ENSG00000168779

Ensembl transcript IDs: ENST00000389589.8, ENST00000425436.7, ENST00000441443.6, ENST00000483851.7, ENST00000490689.3, ENST00000554685.2

Found 394 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTAGGCCCTCGAGTAGGAAAACGGGCAGGAGCCACGGAGCCTGCGTaGCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTTTCCGAG +
Preference number: 1 (lower is better)
Translates to: LGPRVGKRAGATEPA*LVRSLVLRGVWLSE
Trigger: CTCGGAAAGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCTGCCCGTTTTCCTACTCGAGGGCCTAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR CCA 90 bp AGGAGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTaGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGGGA +
Preference number: 1 (lower is better)
Translates to: RSHGACVPREIPGPA*SLAFRVQDAIGDEG
Trigger: TCCCTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR CCA 90 bp TGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGGGATaGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGG +
Preference number: 1 (lower is better)
Translates to: WSLAFRVQDAIGDEG*SVRREEGRLPRSQR
Trigger: CCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR GCA 90 bp AATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGAGCCACGGAGCCTaGGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTTTC +
Preference number: 1 (lower is better)
Translates to: NSRPSSRKTGRSHGA*VPREIPGPAWSLAF
Trigger: GAAAGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCTGCCCGTTTTCCTACTCGAGGGCCTAGAATT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR TCA 90 bp AAGAAGGAACACAAGAAAAGGGGAATGGTGGGAACTAATACTGATTaGGCGCCTACTGTGTCTGGCACAGCGAGGCGCTGTACCTTCATT +
Preference number: 1 (lower is better)
Translates to: KKEHKKRGMVGTNTD*APTVSGTARRCTFI
Trigger: AATGAAGGTACAGCGCCTCGCTGTGCCAGACACAGTAGGCGCTCAATCAGTATTAGTTCCCACCATTCCCCTTTTCTTGTGTTCCTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
3UTR CCA 90 bp GTGAGTGCATGGGAGATAAGGGGGTGGGAGGAGACACACCATCAATaGAATACAAGTAACATGCAAACCGGAATTTACTGTCAGCAGTCC +
Preference number: 1 (lower is better)
Translates to: VSAWEIRGWEETHHQ*NTSNMQTGIYCQQS
Trigger: GGACTGCTGACAGTAAATTCCGGTTTGCATGTTACTTGTATTCCATTGATGGTGTGTCTCCTCCCACCCCCTTATCTCCCATGCACTCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
3UTR CCA 90 bp CATAGTGAAGATGAAAATGGAGTGAGTGCATGGGAGATAAGGGGGTaGGAGGAGACACACCATCAATGGAATACAAGTAACATGCAAACC +
Preference number: 1 (lower is better)
Translates to: HSEDENGVSAWEIRG*EETHHQWNTSNMQT
Trigger: GGTTTGCATGTTACTTGTATTCCATTGATGGTGTGTCTCCTCCCACCCCCTTATCTCCCATGCACTCACTCCATTTTCATCTTCACTATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR GCA 90 bp AGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTGGCGTGCAGGCTGAGTaGCGCGGGACAGGCGCGACA +
Preference number: 2 (lower is better)
Translates to: SHGACVPREIPGPAWSLAGVQAE*RGTGAT
Trigger: TGTCGCGCCTGTCCCGCGGCACTCAGCCTGCACGCC...AGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR TCA 90 bp GCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCAGGAGGGCGTGCAGGCTaGGTGCCGCGGGACAGGCGC +
Preference number: 2 (lower is better)
Translates to: AWSLAFRVQDAIGDEGWSGGRAG*VPRDRR
Trigger: GCGCCTGTCCCGCGGCACTCAGCCTGCACGCCCTCC...TGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR GCA 90 bp GCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCAGGCGTGCAGGCTGAGTaGCGCGGGACAGGCGCGACA +
Preference number: 2 (lower is better)
Translates to: AWSLAFRVQDAIGDEGWSGVQAE*RGTGAT
Trigger: TGTCGCGCCTGTCCCGCGGCACTCAGCCTGCACGCC...TGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR TCA 90 bp TTTCTTGCTCTTCCATACATGGTGGGTTTAAACTCAAAGCATCTGATTCAACGTGGAGGGCGTGCAGGCTaGGTGCCGCGGGACAGGCGC +
Preference number: 2 (lower is better)
Translates to: FLALPYMVGLNSKHLIQRGGRAG*VPRDRR
Trigger: GCGCCTGTCCCGCGGCACTCAGCCTGCACGCCCTCC...ACGTTGAATCAGATGCTTTGAGTTTAAACCCACCATGTATGGAAGAGCAAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR GCA 90 bp CTTCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTGCCACGGAGCCTGCGTaGCTCGTGAGATCCCTGGTC +
Preference number: 2 (lower is better)
Translates to: LRRKRSVSKPVNFPAAHFATEPA*LVRSLV
Trigger: GACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGC...AAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR TCA 90 bp CAAGTTGGTATATTCGAGAGAGTGATACGCATTAATCAAAAGGGAAAGACTATCGGAGGGCGTGCAGGCTaGGTGCCGCGGGACAGGCGC +
Preference number: 2 (lower is better)
Translates to: QVGIFERVIRINQKGKTIGGRAG*VPRDRR
Trigger: GCGCCTGTCCCGCGGCACTCAGCCTGCACGCCCTCC...GATAGTCTTTCCCTTTTGATTAATGCGTATCACTCTCTCGAATATACCAACTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000483851.7
3UTR-3UTR GCA 90 bp AATTGGGATACAGACTGGCTTAGTCCAAGGTATCCCAGTTTAAATAGCTACATGGGCGTGCAGGCTGAGTaGCGCGGGACAGGCGCGACA +
Preference number: 2 (lower is better)
Translates to: NWDTDWLSPRYPSLNSYMGVQAE*RGTGAT
Trigger: TGTCGCGCCTGTCCCGCGGCACTCAGCCTGCACGCC...CATGTAGCTATTTAAACTGGGATACCTTGGACTAAGCCAGTCTGTATCCCAATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR GCA 90 bp TTTCTTGCTCTTCCATACATGGTGGGTTTAAACTCAAAGCATCTGATTCAACGTGGCGTGCAGGCTGAGTaGCGCGGGACAGGCGCGACA +
Preference number: 2 (lower is better)
Translates to: FLALPYMVGLNSKHLIQRGVQAE*RGTGAT
Trigger: TGTCGCGCCTGTCCCGCGGCACTCAGCCTGCACGCC...ACGTTGAATCAGATGCTTTGAGTTTAAACCCACCATGTATGGAAGAGCAAGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR GCA 90 bp TTTTTCTATGCAAGAGTCCATCGTTGCAGCTTTGCGGTGAGCCAAACTCCGCGGTTTCCGAGTCCAAGATaGGATAGGGGACGAGGGATG +
Preference number: 2 (lower is better)
Translates to: FFYARVHRCSFAVSQTPRFPSPR*DRGRGM
Trigger: CATCCCTCGTCCCCTATCGCATCTTGGACTCGGAAA...CCGCGGAGTTTGGCTCACCGCAAAGCTGCAACGATGGACTCTTGCATAGAAAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR GCA 90 bp AATTGGGATACAGACTGGCTTAGTCCAAGGTATCCCAGTTTAAATAGCTACATGGCCACGGAGCCTGCGTaGCTCGTGAGATCCCTGGTC +
Preference number: 2 (lower is better)
Translates to: NWDTDWLSPRYPSLNSYMATEPA*LVRSLV
Trigger: GACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGC...CATGTAGCTATTTAAACTGGGATACCTTGGACTAAGCCAGTCTGTATCCCAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR GCA 90 bp CAAACCGGAATTTACTGTCAGCAGTCCAGACAGTTTTGCCATAATAATTTCTCTAGGAGCCACGGAGCCTaGGTGCCTCGTGAGATCCCT +
Preference number: 2 (lower is better)
Translates to: QTGIYCQQSRQFCHNNFSRSHGA*VPREIP
Trigger: AGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCT...AGAGAAATTATTATGGCAAAACTGTCTGGACTGCTGACAGTAAATTCCGGTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000425436.7
3UTR-3UTR GCA 90 bp GAATTGGAGGCGACACATTTTGTACTGACAACACGTCATGAGATAACATCTTTTAGGAGCCACGGAGCCTaGGTGCCTCGTGAGATCCCT +
Preference number: 2 (lower is better)
Translates to: ELEATHFVLTTRHEITSFRSHGA*VPREIP
Trigger: AGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCT...AAAAGATGTTATCTCATGACGTGTTGTCAGTACAAAATGTGTCGCCTCCAATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR GCA 90 bp CTTCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTGCAAGAGTCCATCGTTaGAGCTTTGCGGTGAGCCAA +
Preference number: 2 (lower is better)
Translates to: LRRKRSVSKPVNFPAAHFARVHR*SFAVSQ
Trigger: TTGGCTCACCGCAAAGCTGCAACGATGGACTCTTGC...AAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR CCA 90 bp TCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTTTGTCCTGCGTGGAGTCTaGCTTTCCGAGTCCAAGATG +
Preference number: 2 (lower is better)
Translates to: SQKKVSFKTCELPSCALFVLRGV*LSESKM
Trigger: CATCTTGGACTCGGAAAGCCAGACTCCACGCAGGAC...AAAAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR GCA 90 bp GTAACATGCAAACCGGAATTTACTGTCAGCAGTCCAGACAGTTTTGCCATAATACCATCGTTGCAGCTTTaGGGTGAGCCAAACTCCGCG +
Preference number: 2 (lower is better)
Translates to: VTCKPEFTVSSPDSFAIIPSLQL*GEPNSA
Trigger: CGCGGAGTTTGGCTCACCGCAAAGCTGCAACGATGG...TATTATGGCAAAACTGTCTGGACTGCTGACAGTAAATTCCGGTTTGCATGTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR CCA 90 bp AATTGGGATACAGACTGGCTTAGTCCAAGGTATCCCAGTTTAAATAGCTACATGATAGGGGACGAGGGATaGTCAGTGAGGCGGGAAGAG +
Preference number: 2 (lower is better)
Translates to: NWDTDWLSPRYPSLNSYMIGDEG*SVRREE
Trigger: CTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTAT...CATGTAGCTATTTAAACTGGGATACCTTGGACTAAGCCAGTCTGTATCCCAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR CCA 90 bp TTTCTTGCTCTTCCATACATGGTGGGTTTAAACTCAAAGCATCTGATTCAACGTATAGGGGACGAGGGATaGTCAGTGAGGCGGGAAGAG +
Preference number: 2 (lower is better)
Translates to: FLALPYMVGLNSKHLIQRIGDEG*SVRREE
Trigger: CTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTAT...ACGTTGAATCAGATGCTTTGAGTTTAAACCCACCATGTATGGAAGAGCAAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR CCA 90 bp CAAATTTCTCGTGTTAACGTGAACTTCGCAGAAAAAGGTCAGTTTCAAAACCTGATCCCTGGTCCTGCGTaGAGTCTGGCTTTCCGAGTC +
Preference number: 2 (lower is better)
Translates to: QISRVNVNFAEKGQFQNLIPGPA*SLAFRV
Trigger: GACTCGGAAAGCCAGACTCCACGCAGGACCAGGGAT...CAGGTTTTGAAACTGACCTTTTTCTGCGAAGTTCACGTTAACACGAGAAATTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR GCA 90 bp GTAACATGCAAACCGGAATTTACTGTCAGCAGTCCAGACAGTTTTGCCATAATAGCAAGAGTCCATCGTTaGAGCTTTGCGGTGAGCCAA +
Preference number: 2 (lower is better)
Translates to: VTCKPEFTVSSPDSFAIIARVHR*SFAVSQ
Trigger: TTGGCTCACCGCAAAGCTGCAACGATGGACTCTTGC...TATTATGGCAAAACTGTCTGGACTGCTGACAGTAAATTCCGGTTTGCATGTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR CCA 90 bp TTTCTTGCTCTTCCATACATGGTGGGTTTAAACTCAAAGCATCTGATTCAACGTGTCCTGCGTGGAGTCTaGCTTTCCGAGTCCAAGATG +
Preference number: 2 (lower is better)
Translates to: FLALPYMVGLNSKHLIQRVLRGV*LSESKM
Trigger: CATCTTGGACTCGGAAAGCCAGACTCCACGCAGGAC...ACGTTGAATCAGATGCTTTGAGTTTAAACCCACCATGTATGGAAGAGCAAGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR GCA 90 bp TTTCTTGCTCTTCCATACATGGTGGGTTTAAACTCAAAGCATCTGATTCAACGTGCAAGAGTCCATCGTTaGAGCTTTGCGGTGAGCCAA +
Preference number: 2 (lower is better)
Translates to: FLALPYMVGLNSKHLIQRARVHR*SFAVSQ
Trigger: TTGGCTCACCGCAAAGCTGCAACGATGGACTCTTGC...ACGTTGAATCAGATGCTTTGAGTTTAAACCCACCATGTATGGAAGAGCAAGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR GCA 90 bp GAATTGGAGGCGACACATTTTGTACTGACAACACGTCATGAGATAACATCTTTTGCAAGAGTCCATCGTTaGAGCTTTGCGGTGAGCCAA +
Preference number: 2 (lower is better)
Translates to: ELEATHFVLTTRHEITSFARVHR*SFAVSQ
Trigger: TTGGCTCACCGCAAAGCTGCAACGATGGACTCTTGC...AAAAGATGTTATCTCATGACGTGTTGTCAGTACAAAATGTGTCGCCTCCAATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR CCA 90 bp CTTCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTCTCTCGAGAATCGTCTaGGTTGTTTTTCCATATTTT +
Preference number: 2 (lower is better)
Translates to: LRRKRSVSKPVNFPAAHFLSRIV*VVFPYF
Trigger: AAAATATGGAAAAACAACCCAGACGATTCTCGAGAG...AAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR CCA 90 bp GAATTGGAGGCGACACATTTTGTACTGACAACACGTCATGAGATAACATCTTTTGGCTTGCTAGCGAATTaGGATACAGACTGGCTTAGT +
Preference number: 2 (lower is better)
Translates to: ELEATHFVLTTRHEITSFGLLAN*DTDWLS
Trigger: ACTAAGCCAGTCTGTATCCCAATTCGCTAGCAAGCC...AAAAGATGTTATCTCATGACGTGTTGTCAGTACAAAATGTGTCGCCTCCAATTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR GCA 90 bp TCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTTTCTCTTCTTTCTGCTTTaGCTTCTTAGCGCATTTTTA +
Preference number: 2 (lower is better)
Translates to: SQKKVSFKTCELPSCALFLFFLL*LLSAFL
Trigger: TAAAAATGCGCTAAGAAGGCAAAGCAGAAAGAAGAG...AAAAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR GCA 90 bp CAAATTTCTCGTGTTAACGTGAACTTCGCAGAAAAAGGTCAGTTTCAAAACCTGCTCTTCTTTCTGCTTTaGCTTCTTAGCGCATTTTTA +
Preference number: 2 (lower is better)
Translates to: QISRVNVNFAEKGQFQNLLFFLL*LLSAFL
Trigger: TAAAAATGCGCTAAGAAGGCAAAGCAGAAAGAAGAG...CAGGTTTTGAAACTGACCTTTTTCTGCGAAGTTCACGTTAACACGAGAAATTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR TCA 72 bp GAAAACGGGCAGGAGCCACGGAGCCTGCGTGCCTCGTaGGATCCCTGGTCCTGCGTGGAGTCTGGCTTTCCG +
Preference number: 3 (lower is better)
Translates to: ENGQEPRSLRAS*DPWSCVESGFP
Trigger: CGGAAAGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCTGCCCGTTTTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR CCA 72 bp GCTTTCCGAGTCCAAGATGCGATAGGGGACGAGGGATaGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGG +
Preference number: 3 (lower is better)
Translates to: AFRVQDAIGDEG*SVRREEGRLPR
Trigger: CCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAAAGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR CCA 72 bp GGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTaGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGG +
Preference number: 3 (lower is better)
Translates to: GACVPREIPGPA*SLAFRVQDAIG
Trigger: CCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR GCA 72 bp TGGTCCTGCGTGGAGTCTGGCTTTCCGAGTCCAAGATaGGATAGGGGACGAGGGATGGTCAGTGAGGCGGGA +
Preference number: 3 (lower is better)
Translates to: WSCVESGFPSPR*DRGRGMVSEAG
Trigger: TCCCGCCTCACTGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGCAGGACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR TCA 72 bp TTTTCTATGCAAGAGTCCATCGTTGCAGCTTTGCGGTaGGCCAAACTCCGCGGTTCCAGCACTCCCCTGTCC +
Preference number: 3 (lower is better)
Translates to: FSMQESIVAALR*AKLRGSSTPLS
Trigger: GGACAGGGGAGTGCTGGAACCGCGGAGTTTGGCTCACCGCAAAGCTGCAACGATGGACTCTTGCATAGAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR TCA 72 bp CACAAGAAAAGGGGAATGGTGGGAACTAATACTGATTaGGCGCCTACTGTGTCTGGCACAGCGAGGCGCTGT +
Preference number: 3 (lower is better)
Translates to: HKKRGMVGTNTD*APTVSGTARRC
Trigger: ACAGCGCCTCGCTGTGCCAGACACAGTAGGCGCTCAATCAGTATTAGTTCCCACCATTCCCCTTTTCTTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR CAA 90 bp GTAACATGCAAACCGGAATTTACTGTCAGCAGTCCAGACAGTTTTGCCATAATATGCAAGAGTCCATCGTaGCAGCTTTGCGGTGAGCCA +
Preference number: 3 (lower is better)
Translates to: VTCKPEFTVSSPDSFAIICKSPS*QLCGEP
Trigger: TGGCTCACCGCAAAGCTGCAACGATGGACTCTTGCA...TATTATGGCAAAACTGTCTGGACTGCTGACAGTAAATTCCGGTTTGCATGTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR CAA 90 bp CAAACCGGAATTTACTGTCAGCAGTCCAGACAGTTTTGCCATAATAATTTCTCTTGCAAGAGTCCATCGTaGCAGCTTTGCGGTGAGCCA +
Preference number: 3 (lower is better)
Translates to: QTGIYCQQSRQFCHNNFSCKSPS*QLCGEP
Trigger: TGGCTCACCGCAAAGCTGCAACGATGGACTCTTGCA...AGAGAAATTATTATGGCAAAACTGTCTGGACTGCTGACAGTAAATTCCGGTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000425436.7
3UTR-3UTR CAA 90 bp TTTCTTGCTCTTCCATACATGGTGGGTTTAAACTCAAAGCATCTGATTCAACGTTGCAAGAGTCCATCGTaGCAGCTTTGCGGTGAGCCA +
Preference number: 3 (lower is better)
Translates to: FLALPYMVGLNSKHLIQRCKSPS*QLCGEP
Trigger: TGGCTCACCGCAAAGCTGCAACGATGGACTCTTGCA...ACGTTGAATCAGATGCTTTGAGTTTAAACCCACCATGTATGGAAGAGCAAGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR GCA 72 bp GGGAGGAGACACACCATCAATGGAATACAAGTAACATaGAAACCGGAATTTACTGTCAGCAGTCCAGACAGT +
Preference number: 3 (lower is better)
Translates to: GRRHTINGIQVT*KPEFTVSSPDS
Trigger: ACTGTCTGGACTGCTGACAGTAAATTCCGGTTTGCATGTTACTTGTATTCCATTGATGGTGTGTCTCCTCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
3UTR CCA 72 bp TGGGAGATAAGGGGGTGGGAGGAGACACACCATCAATaGAATACAAGTAACATGCAAACCGGAATTTACTGT +
Preference number: 3 (lower is better)
Translates to: WEIRGWEETHHQ*NTSNMQTGIYC
Trigger: ACAGTAAATTCCGGTTTGCATGTTACTTGTATTCCATTGATGGTGTGTCTCCTCCCACCCCCTTATCTCCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
3UTR CCA 72 bp AAACAAAACCCCACAAACTTAGGCTTGCTAGCGAATTaGGATACAGACTGGCTTAGTCCAAGGTATCCCAGT +
Preference number: 3 (lower is better)
Translates to: KQNPTNLGLLAN*DTDWLSPRYPS
Trigger: ACTGGGATACCTTGGACTAAGCCAGTCTGTATCCCAATTCGCTAGCAAGCCTAAGTTTGTGGGGTTTTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
3UTR TCA 72 bp AGGCCCGCCTCTCTCATCAAATTTCTCGTGTTAACGTaGACTTCGCAGAAAAAGGTCAGTTTCAAAACCTGT +
Preference number: 3 (lower is better)
Translates to: RPASLIKFLVLT*TSQKKVSFKTC
Trigger: ACAGGTTTTGAAACTGACCTTTTTCTGCGAAGTTCACGTTAACACGAGAAATTTGATGAGAGAGGCGGGCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
3UTR CCA 72 bp ACAAACTTAGGCTTGCTAGCGAATTGGGATACAGACTaGCTTAGTCCAAGGTATCCCAGTTTAAATAGCTAC +
Preference number: 3 (lower is better)
Translates to: TNLGLLANWDTD*LSPRYPSLNSY
Trigger: GTAGCTATTTAAACTGGGATACCTTGGACTAAGCCAGTCTGTATCCCAATTCGCTAGCAAGCCTAAGTTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR CAA 90 bp CAAATAGGACTTCAGGAAACCAACAAGAAGGAACACAAGAAAAGGGGAATGGTGATTTGTTTTTGCTCCTaGGTTCTCCAATTTCAGCTT +
Preference number: 3 (lower is better)
Translates to: QIGLQETNKKEHKKRGMVICFCS*VLQFQL
Trigger: AAGCTGAAATTGGAGAACCAAGGAGCAAAAACAAAT...CACCATTCCCCTTTTCTTGTGTTCCTTCTTGTTGGTTTCCTGAAGTCCTATTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
3UTR-3UTR CAA 90 bp ATTTACTGTCAGCAGTCCAGACAGTTTTGCCATAATAATTTCTCTCTCCTCGTTATTTGTTTTTGCTCCTaGGTTCTCCAATTTCAGCTT +
Preference number: 3 (lower is better)
Translates to: IYCQQSRQFCHNNFSLLVICFCS*VLQFQL
Trigger: AAGCTGAAATTGGAGAACCAAGGAGCAAAAACAAAT...AACGAGGAGAGAGAAATTATTATGGCAAAACTGTCTGGACTGCTGACAGTAAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000425436.7
CDS-3UTR GCA 90 bp GAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGGGCGCGGCTGCCCGGCTCCCTaGTTCTCTCGGCGGCGCCCA +
Preference number: 4 (lower is better)
Translates to: EEGRLPRSQRGNGEAAGRGCPAP*FSRRRP
Trigger: TGGGCGCCGCCGAGAGAAGCAGGGAGCCGGGCAGCC...GCGCCCCGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000389589.8
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGGGCGCGGTCTTGGCGGCTGCTaGGGCCGCCACTACCGAGGC +
Preference number: 4 (lower is better)
Translates to: EEGRLPRSQRGNGEAAGRGLGGC*GRHYRG
Trigger: GCCTCGGTAGTGGCGGCCGCAGCAGCCGCCAAGACC...GCGCCCCGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGGGTGGTCTTGGCGGCTaGTGCGGCCGCCACTACCGA +
Preference number: 4 (lower is better)
Translates to: AIGDEGWSVRREEGRLPRGGLGG*CGRHYR
Trigger: TCGGTAGTGGCGGCCGCAGCAGCCGCCAAGACCACC...CCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GGCAGGAGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCCGTCAGTCGCGGGCTaGCCGGCTCCCTGCTTCTCT +
Preference number: 4 (lower is better)
Translates to: GRSHGACVPREIPGPAWSPSVAG*PAPCFS
Trigger: AGAGAAGCAGGGAGCCGGGCAGCCCGCGACTGACGG...ACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCTGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000389589.8
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp AGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTGCGTGCGCGGCCAGGTaGGGATGCAGGTGGTGGTGC +
Preference number: 4 (lower is better)
Translates to: SHGACVPREIPGPAWSLAACAAR*GCRWWC
Trigger: GCACCACCACCTGCATCCGCACCTGGCCGCGCACGC...AGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp AGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGGCGTGCAGGCTGAGTaGCGCGGGACAGGCGCGACA +
Preference number: 4 (lower is better)
Translates to: RREEGRLPRSQRGNGEAAGVQAE*RGTGAT
Trigger: TGTCGCGCCTGTCCCGCGGCACTCAGCCTGCACGCC...CGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GGCAGGAGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTAATCCGCGGCCAGCGTaGCGAGCGGCAGTCCGAAGG +
Preference number: 4 (lower is better)
Translates to: GRSHGACVPREIPGPAWSNPRPA*RAAVRR
Trigger: CCTTCGGACTGCCGCTCGCCACGCTGGCCGCGGATT...ACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCTGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GGCAGGAGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCCGGCGCTCAACCTCTaGCAGCAGAGCCCCGCTCTT +
Preference number: 4 (lower is better)
Translates to: GRSHGACVPREIPGPAWSPALNL*QQSPAL
Trigger: AAGAGCGGGGCTCTGCTGGCAGAGGTTGAGCGCCGG...ACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCTGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389589.8
ENST00000483851.7
CDS-3UTR GCA 90 bp GGCAGGAGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTGCCACGGAGCCTGCGTaGCTCGTGAGATCCCTGGTC +
Preference number: 4 (lower is better)
Translates to: GRSHGACVPREIPGPAWSATEPA*LVRSLV
Trigger: GACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGC...ACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCTGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp AGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTAATCCGCGGCCAGCGTaGCGAGCGGCAGTCCGAAGG +
Preference number: 4 (lower is better)
Translates to: SHGACVPREIPGPAWSLANPRPA*RAAVRR
Trigger: CCTTCGGACTGCCGCTCGCCACGCTGGCCGCGGATT...AGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGGCGCGACATTGGTGCTaGCGTTGGCGTCACAGACCC +
Preference number: 4 (lower is better)
Translates to: AIGDEGWSVRREEGRLPRARHWC*RWRHRP
Trigger: GGGTCTGTGACGCCAACGCCAGCACCAATGTCGCGC...CCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp GCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGGCACCTCCCGGTACGTaGTCGCCTCCTTCTTCTCCT +
Preference number: 4 (lower is better)
Translates to: AIGDEGWSVRREEGRLPRAPPGT*SPPSSP
Trigger: AGGAGAAGAAGGAGGCGATCACGTACCGGGAGGTGC...CCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000389589.8
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp TTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGGAGGGCGTGCAGGCTaGGTGCCGCGGGACAGGCGC +
Preference number: 4 (lower is better)
Translates to: FRVQDAIGDEGWSVRREEGGRAG*VPRDRR
Trigger: GCGCCTGTCCCGCGGCACTCAGCCTGCACGCCCTCC...CTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp AGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTAGCCTGCGTGCCTCGTaGGATCCCTGGTCCTGCGTG +
Preference number: 4 (lower is better)
Translates to: SHGACVPREIPGPAWSLASLRAS*DPWSCV
Trigger: CACGCAGGACCAGGGATCTCACGAGGCACGCAGGCT...AGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGGGCGCAGGAGCCACGGAGCCTaGGTGCCTCGTGAGATCCCT +
Preference number: 4 (lower is better)
Translates to: EEGRLPRSQRGNGEAAGRRSHGA*VPREIP
Trigger: AGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCT...GCGCCCCGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GGCAGGAGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTAGAAGGGGCGGGGGCTaGCGGAGGGAAATGGGAACT +
Preference number: 4 (lower is better)
Translates to: GRSHGACVPREIPGPAWSRRGGG*RREMGT
Trigger: AGTTCCCATTTCCCTCCGGCAGCCCCCGCCCCTTCT...ACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCTGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000483851.7
CDS-3UTR CCA 90 bp AGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTTCTTGCTGGTGGTCTTaGCGGCTGCTGCGGCCGCCA +
Preference number: 4 (lower is better)
Translates to: SHGACVPREIPGPAWSLASCWWS*RLLRPP
Trigger: TGGCGGCCGCAGCAGCCGCCAAGACCACCAGCAAGA...AGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGCATTGGTGCTGGCGTTaGCGTCACAGACCCAGGGCT +
Preference number: 4 (lower is better)
Translates to: AIGDEGWSVRREEGRLPRHWCWR*RHRPRA
Trigger: AGCCCTGGGTCTGTGACGCCAACGCCAGCACCAATG...CCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GGCAGGAGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTGCGCGACATTGGTGCTaGCGTTGGCGTCACAGACCC +
Preference number: 4 (lower is better)
Translates to: GRSHGACVPREIPGPAWSARHWC*RWRHRP
Trigger: GGGTCTGTGACGCCAACGCCAGCACCAATGTCGCGC...ACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCTGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp GAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGGGCGCGAGGGAAATGGGAACTaGTGCTTCCCTGCCGGAGCG +
Preference number: 4 (lower is better)
Translates to: EEGRLPRSQRGNGEAAGREGNGN*CFPAGA
Trigger: CGCTCCGGCAGGGAAGCATCAGTTCCCATTTCCCTC...GCGCCCCGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000483851.7
CDS-3UTR GCA 90 bp CGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGCAGGCGCGACATTGGTaGTGGCGTTGGCGTCACAGA +
Preference number: 4 (lower is better)
Translates to: RGMVSEAGRGPAPEVSKGQARHW*WRWRHR
Trigger: TCTGTGACGCCAACGCCAGCACCAATGTCGCGCCTG...CCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp CGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGGACAGGCCCAGTCGCTaGCTCAGTTCCTCTCGCATG +
Preference number: 4 (lower is better)
Translates to: RGMVSEAGRGPAPEVSKGDRPSR*LSSSRM
Trigger: CATGCGAGAGGAACTGAGCCAGCGACTGGGCCTGTC...CCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GGCAGGAGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTGACAGGCCCAGTCGCTaGCTCAGTTCCTCTCGCATG +
Preference number: 4 (lower is better)
Translates to: GRSHGACVPREIPGPAWSDRPSR*LSSSRM
Trigger: CATGCGAGAGGAACTGAGCCAGCGACTGGGCCTGTC...ACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCTGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GGCAGGAGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCATTGGTGCTGGCGTTaGCGTCACAGACCCAGGGCT +
Preference number: 4 (lower is better)
Translates to: GRSHGACVPREIPGPAWSHWCWR*RHRPRA
Trigger: AGCCCTGGGTCTGTGACGCCAACGCCAGCACCAATG...ACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCTGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp AGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTGTTGCAGCTTTGCGGTaGGCCAAACTCCGCGGTTCC +
Preference number: 4 (lower is better)
Translates to: SHGACVPREIPGPAWSLAVAALR*AKLRGS
Trigger: GGAACCGCGGAGTTTGGCTCACCGCAAAGCTGCAAC...AGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp CCTGGTCCTGCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGCCGTCAGTCGCGGGCTaGCCGGCTCCCTGCTTCTCT +
Preference number: 4 (lower is better)
Translates to: PGPAWSLAFRVQDAIGDEPSVAG*PAPCFS
Trigger: AGAGAAGCAGGGAGCCGGGCAGCCCGCGACTGACGG...CTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGCAGGACCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000389589.8
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp CGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGCGATGCTGGAGTTCTTaGTGGTGGTCTTGGCGGCTG +
Preference number: 4 (lower is better)
Translates to: RGMVSEAGRGPAPEVSKGRCWSS*WWSWRL
Trigger: CAGCCGCCAAGACCACCAGCAAGAACTCCAGCATCG...CCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp AGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTCAGGCGCGACATTGGTaGTGGCGTTGGCGTCACAGA +
Preference number: 4 (lower is better)
Translates to: SHGACVPREIPGPAWSLAQARHW*WRWRHR
Trigger: TCTGTGACGCCAACGCCAGCACCAATGTCGCGCCTG...AGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGGAACTGATGCTTCCCTaGCGGAGCGCGCTTGTTCAA +
Preference number: 4 (lower is better)
Translates to: AIGDEGWSVRREEGRLPRELMLP*RSALVQ
Trigger: TTGAACAAGCGCGCTCCGGCAGGGAAGCATCAGTTC...CCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000483851.7
CDS-3UTR CCA 90 bp GCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGGTCCTGCGTGGAGTCTaGCTTTCCGAGTCCAAGATG +
Preference number: 4 (lower is better)
Translates to: AIGDEGWSVRREEGRLPRVLRGV*LSESKM
Trigger: CATCTTGGACTCGGAAAGCCAGACTCCACGCAGGAC...CCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GGCAGGAGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTATCCCTGGTCCTGCGTaGAGTCTGGCTTTCCGAGTC +
Preference number: 4 (lower is better)
Translates to: GRSHGACVPREIPGPAWSIPGPA*SLAFRV
Trigger: GACTCGGAAAGCCAGACTCCACGCAGGACCAGGGAT...ACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCTGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGGGCGCGCTGCCGGAGGGAAATaGGAACTGATGCTTCCCTGC +
Preference number: 4 (lower is better)
Translates to: EEGRLPRSQRGNGEAAGRAAGGK*ELMLPC
Trigger: GCAGGGAAGCATCAGTTCCCATTTCCCTCCGGCAGC...GCGCCCCGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000483851.7
CDS-3UTR TCA 90 bp CCTGGTCCTGCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGAGCCTGCGTGCCTCGTaGGATCCCTGGTCCTGCGTG +
Preference number: 4 (lower is better)
Translates to: PGPAWSLAFRVQDAIGDESLRAS*DPWSCV
Trigger: CACGCAGGACCAGGGATCTCACGAGGCACGCAGGCT...CTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGCAGGACCAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp CCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGAGCCACGGAGGCTGCCCGGCTCCCTaGTTCTCTCGGCGGCGCCCA +
Preference number: 4 (lower is better)
Translates to: PTKPNSRPSSRKTGRSHGGCPAP*FSRRRP
Trigger: TGGGCGCCGCCGAGAGAAGCAGGGAGCCGGGCAGCC...TCCGTGGCTCCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000389589.8
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGCTTTCGCATCCTCTTTaGGATCTTTCAGCTCCGGGG +
Preference number: 4 (lower is better)
Translates to: AIGDEGWSVRREEGRLPRLSHPL*DLSAPG
Trigger: CCCCGGAGCTGAAAGATCGCAAAGAGGATGCGAAAG...CCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGTTTCCGAGTCCAAGATaGGATAGGGGACGAGGGATG +
Preference number: 4 (lower is better)
Translates to: AIGDEGWSVRREEGRLPRFPSPR*DRGRGM
Trigger: CATCCCTCGTCCCCTATCGCATCTTGGACTCGGAAA...CCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCAAATCCGCGGCCAGCGTaGCGAGCGGCAGTCCGAAGG +
Preference number: 4 (lower is better)
Translates to: AWSLAFRVQDAIGDEGWSNPRPA*RAAVRR
Trigger: CCTTCGGACTGCCGCTCGCCACGCTGGCCGCGGATT...TGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp AGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTTGCTGGAGTTCTTGCTaGTGGTCTTGGCGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: SHGACVPREIPGPAWSLACWSSC*WSWRLL
Trigger: CAGCAGCCGCCAAGACCACCAGCAAGAACTCCAGCA...AGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp AGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGTGCTGGAGTTCTTGCTaGTGGTCTTGGCGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: RREEGRLPRSQRGNGEAACWSSC*WSWRLL
Trigger: CAGCAGCCGCCAAGACCACCAGCAAGAACTCCAGCA...CGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp AGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTATAGGGGACGAGGGATaGTCAGTGAGGCGGGAAGAG +
Preference number: 4 (lower is better)
Translates to: SHGACVPREIPGPAWSLAIGDEG*SVRREE
Trigger: CTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTAT...AGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGGGCGCGTCCTGCGTGGAGTCTaGCTTTCCGAGTCCAAGATG +
Preference number: 4 (lower is better)
Translates to: EEGRLPRSQRGNGEAAGRVLRGV*LSESKM
Trigger: CATCTTGGACTCGGAAAGCCAGACTCCACGCAGGAC...GCGCCCCGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp CGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGGTCCTGCGTGGAGTCTaGCTTTCCGAGTCCAAGATG +
Preference number: 4 (lower is better)
Translates to: RGMVSEAGRGPAPEVSKGVLRGV*LSESKM
Trigger: CATCTTGGACTCGGAAAGCCAGACTCCACGCAGGAC...CCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp AGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGGCTGGCGGCCCCTATaGGAACACCTTTATGGAGTT +
Preference number: 4 (lower is better)
Translates to: RREEGRLPRSQRGNGEAAGWRPL*EHLYGV
Trigger: AACTCCATAAAGGTGTTCTCATAGGGGCCGCCAGCC...CGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp AGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTGGCTGGCGGCCCCTATaGGAACACCTTTATGGAGTT +
Preference number: 4 (lower is better)
Translates to: SHGACVPREIPGPAWSLAGWRPL*EHLYGV
Trigger: AACTCCATAAAGGTGTTCTCATAGGGGCCGCCAGCC...AGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGGGCGCCTTTCGCATCCTCTTTaGGATCTTTCAGCTCCGGGG +
Preference number: 4 (lower is better)
Translates to: EEGRLPRSQRGNGEAAGRLSHPL*DLSAPG
Trigger: CCCCGGAGCTGAAAGATCGCAAAGAGGATGCGAAAG...GCGCCCCGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp CGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGGTCCGACTTCGCCTCTaGTTGATTTTGGTCTGGCCT +
Preference number: 4 (lower is better)
Translates to: RGMVSEAGRGPAPEVSKGVRLRL*LILVWP
Trigger: AGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGAC...CCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp AGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGTCACAGACCCAGGGCTaGGGCGTGCTTTTTGGCTTT +
Preference number: 4 (lower is better)
Translates to: RREEGRLPRSQRGNGEAASQTQG*GVLFGF
Trigger: AAAGCCAAAAAGCACGCCGCAGCCCTGGGTCTGTGA...CGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGGGCGCTTTCCGAGTCCAAGATaGGATAGGGGACGAGGGATG +
Preference number: 4 (lower is better)
Translates to: EEGRLPRSQRGNGEAAGRFPSPR*DRGRGM
Trigger: CATCCCTCGTCCCCTATCGCATCTTGGACTCGGAAA...GCGCCCCGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCAGCCACGGAGCCTGCGTaGCTCGTGAGATCCCTGGTC +
Preference number: 4 (lower is better)
Translates to: AWSLAFRVQDAIGDEGWSATEPA*LVRSLV
Trigger: GACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGC...TGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GGCAGGAGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTACAAGCTTCAAACTaGCTGGCGGCCCCTATGAGA +
Preference number: 4 (lower is better)
Translates to: GRSHGACVPREIPGPAWSLQASN*LAAPMR
Trigger: TCTCATAGGGGCCGCCAGCCAGTTTGAAGCTTGTAG...ACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCATCTTGCTGGTGGTCTTaGCGGCTGCTGCGGCCGCCA +
Preference number: 4 (lower is better)
Translates to: AWSLAFRVQDAIGDEGWSSCWWS*RLLRPP
Trigger: TGGCGGCCGCAGCAGCCGCCAAGACCACCAGCAAGA...TGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp GGCAGGAGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCAGTTTCAAAACCTGTaGACTTCCCAGCTGCGCACT +
Preference number: 4 (lower is better)
Translates to: GRSHGACVPREIPGPAWSQFQNL*TSQLRT
Trigger: AGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTG...ACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp AGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTCTTTCGCATCCTCTTTaGGATCTTTCAGCTCCGGGG +
Preference number: 4 (lower is better)
Translates to: SHGACVPREIPGPAWSLALSHPL*DLSAPG
Trigger: CCCCGGAGCTGAAAGATCGCAAAGAGGATGCGAAAG...AGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp AAACCCGCTCCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGGGTCTTGGCGGCTGCTaGGGCCGCCACTACCGAGGC +
Preference number: 4 (lower is better)
Translates to: KPAPTKPNSRPSSRKTGRGLGGC*GRHYRG
Trigger: GCCTCGGTAGTGGCGGCCGCAGCAGCCGCCAAGACC...CCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGGAGCGGGTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp CCTGGTCCTGCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGCAGGCGCGACATTGGTaGTGGCGTTGGCGTCACAGA +
Preference number: 4 (lower is better)
Translates to: PGPAWSLAFRVQDAIGDEQARHW*WRWRHR
Trigger: TCTGTGACGCCAACGCCAGCACCAATGTCGCGCCTG...CTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGCAGGACCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp TTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGAGGAGCCACGGAGCCTaGGTGCCTCGTGAGATCCCT +
Preference number: 4 (lower is better)
Translates to: FRVQDAIGDEGWSVRREERSHGA*VPREIP
Trigger: AGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCT...CTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGATAATAACACATCAATaGGACAGGAGGTGGGGGAGG +
Preference number: 4 (lower is better)
Translates to: AIGDEGWSVRREEGRLPRIITHQ*DRRWGR
Trigger: CCTCCCCCACCTCCTGTCCCATTGATGTGTTATTAT...CCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000389589.8
ENST00000483851.7
CDS-3UTR CCA 90 bp TTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGCGCGACATTGGTGCTaGCGTTGGCGTCACAGACCC +
Preference number: 4 (lower is better)
Translates to: FRVQDAIGDEGWSVRREEARHWC*RWRHRP
Trigger: GGGTCTGTGACGCCAACGCCAGCACCAATGTCGCGC...CTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp TTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGGACAGGCGCGACATTaGTGCTGGCGTTGGCGTCAC +
Preference number: 4 (lower is better)
Translates to: FRVQDAIGDEGWSVRREEGQARH*CWRWRH
Trigger: GTGACGCCAACGCCAGCACCAATGTCGCGCCTGTCC...CTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp AGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTTGGGAGATAAGGGGGTaGGAGGAGACACACCATCAA +
Preference number: 4 (lower is better)
Translates to: SHGACVPREIPGPAWSLAWEIRG*EETHHQ
Trigger: TTGATGGTGTGTCTCCTCCCACCCCCTTATCTCCCA...AGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp TTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGCACCTCCCGGTACGTaGTCGCCTCCTTCTTCTCCT +
Preference number: 4 (lower is better)
Translates to: FRVQDAIGDEGWSVRREEAPPGT*SPPSSP
Trigger: AGGAGAAGAAGGAGGCGATCACGTACCGGGAGGTGC...CTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000389589.8
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp TTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGTTGCAGCTTTGCGGTaGGCCAAACTCCGCGGTTCC +
Preference number: 4 (lower is better)
Translates to: FRVQDAIGDEGWSVRREEVAALR*AKLRGS
Trigger: GGAACCGCGGAGTTTGGCTCACCGCAAAGCTGCAAC...CTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp AGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGCAGTTTCAAAACCTGTaGACTTCCCAGCTGCGCACT +
Preference number: 4 (lower is better)
Translates to: RREEGRLPRSQRGNGEAAQFQNL*TSQLRT
Trigger: AGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTG...CGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp TTTTTCTATGCAAGAGTCCATCGTTGCAGCTTTGCGGTGAGCCAAACTCCGCGGGGTCTTGGCGGCTGCTaGGGCCGCCACTACCGAGGC +
Preference number: 4 (lower is better)
Translates to: FFYARVHRCSFAVSQTPRGLGGC*GRHYRG
Trigger: GCCTCGGTAGTGGCGGCCGCAGCAGCCGCCAAGACC...CCGCGGAGTTTGGCTCACCGCAAAGCTGCAACGATGGACTCTTGCATAGAAAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp AAACCCGCTCCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGGGTGGTCTTGGCGGCTaGTGCGGCCGCCACTACCGA +
Preference number: 4 (lower is better)
Translates to: KPAPTKPNSRPSSRKTGRGGLGG*CGRHYR
Trigger: TCGGTAGTGGCGGCCGCAGCAGCCGCCAAGACCACC...CCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGGAGCGGGTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCACAGGCGCGACATTGGTaGTGGCGTTGGCGTCACAGA +
Preference number: 4 (lower is better)
Translates to: AWSLAFRVQDAIGDEGWSQARHW*WRWRHR
Trigger: TCTGTGACGCCAACGCCAGCACCAATGTCGCGCCTG...TGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGGGCGCATAATAACACATCAATaGGACAGGAGGTGGGGGAGG +
Preference number: 4 (lower is better)
Translates to: EEGRLPRSQRGNGEAAGRIITHQ*DRRWGR
Trigger: CCTCCCCCACCTCCTGTCCCATTGATGTGTTATTAT...GCGCCCCGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000389589.8
ENST00000483851.7
CDS-3UTR CCA 90 bp AGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTTGCTTGATTTTGGTCTaGCCTTCGTCCTCCATCCCT +
Preference number: 4 (lower is better)
Translates to: SHGACVPREIPGPAWSLACLILV*PSSSIP
Trigger: AGGGATGGAGGACGAAGGCCAGACCAAAATCAAGCA...AGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp TTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGCATTGGTGCTGGCGTTaGCGTCACAGACCCAGGGCT +
Preference number: 4 (lower is better)
Translates to: FRVQDAIGDEGWSVRREEHWCWR*RHRPRA
Trigger: AGCCCTGGGTCTGTGACGCCAACGCCAGCACCAATG...CTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp CCTGGTCCTGCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGATAGGGGACGAGGGATaGTCAGTGAGGCGGGAAGAG +
Preference number: 4 (lower is better)
Translates to: PGPAWSLAFRVQDAIGDEIGDEG*SVRREE
Trigger: CTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTAT...CTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGCAGGACCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp CCTGGTCCTGCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGATCCCTGGTCCTGCGTaGAGTCTGGCTTTCCGAGTC +
Preference number: 4 (lower is better)
Translates to: PGPAWSLAFRVQDAIGDEIPGPA*SLAFRV
Trigger: GACTCGGAAAGCCAGACTCCACGCAGGACCAGGGAT...CTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGCAGGACCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp TTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGTCAGTTCCTCTCGCATaGAGGCGTCGGGATAGTGGG +
Preference number: 4 (lower is better)
Translates to: FRVQDAIGDEGWSVRREESVPLA*RRRDSG
Trigger: CCCACTATCCCGACGCCTTCATGCGAGAGGAACTGA...CTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp CCTGGTCCTGCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGGGCTGGCGGCCCCTATaGGAACACCTTTATGGAGTT +
Preference number: 4 (lower is better)
Translates to: PGPAWSLAFRVQDAIGDEGWRPL*EHLYGV
Trigger: AACTCCATAAAGGTGTTCTCATAGGGGCCGCCAGCC...CTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGCAGGACCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCACCATCGTTGCAGCTTTaGGGTGAGCCAAACTCCGCG +
Preference number: 4 (lower is better)
Translates to: AWSLAFRVQDAIGDEGWSPSLQL*GEPNSA
Trigger: CGCGGAGTTTGGCTCACCGCAAAGCTGCAACGATGG...TGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp TTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGATAGGGGACGAGGGATaGTCAGTGAGGCGGGAAGAG +
Preference number: 4 (lower is better)
Translates to: FRVQDAIGDEGWSVRREEIGDEG*SVRREE
Trigger: CTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTAT...CTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp AGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTTTAAAGCACCTACGTTaGCATAAGGTGCGACTCTAC +
Preference number: 4 (lower is better)
Translates to: SHGACVPREIPGPAWSLALKHLR*HKVRLY
Trigger: GTAGAGTCGCACCTTATGTCAACGTAGGTGCTTTAA...AGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp CCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGAGCCACGGAGTTGCAGCTTTGCGGTaGGCCAAACTCCGCGGTTCC +
Preference number: 4 (lower is better)
Translates to: PTKPNSRPSSRKTGRSHGVAALR*AKLRGS
Trigger: GGAACCGCGGAGTTTGGCTCACCGCAAAGCTGCAAC...TCCGTGGCTCCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp CCTGGTCCTGCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGGTCCGACTTCGCCTCTaGTTGATTTTGGTCTGGCCT +
Preference number: 4 (lower is better)
Translates to: PGPAWSLAFRVQDAIGDEVRLRL*LILVWP
Trigger: AGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGAC...CTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGCAGGACCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp AAACCCGCTCCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGAGGAGCCACGGAGCCTaGGTGCCTCGTGAGATCCCT +
Preference number: 4 (lower is better)
Translates to: KPAPTKPNSRPSSRKTGRRSHGA*VPREIP
Trigger: AGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCT...CCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGGAGCGGGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp CCTGGTCCTGCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGGCAAGAGTCCATCGTTaGAGCTTTGCGGTGAGCCAA +
Preference number: 4 (lower is better)
Translates to: PGPAWSLAFRVQDAIGDEARVHR*SFAVSQ
Trigger: TTGGCTCACCGCAAAGCTGCAACGATGGACTCTTGC...CTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGCAGGACCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp CCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGAGCCACGGATGGAGTTCTTGCTGGTaGTCTTGGCGGCTGCTGCGG +
Preference number: 4 (lower is better)
Translates to: PTKPNSRPSSRKTGRSHGWSSCW*SWRLLR
Trigger: CCGCAGCAGCCGCCAAGACCACCAGCAAGAACTCCA...TCCGTGGCTCCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGAGAAAAGGGGAATGGTaGGAACTAATACTGATTGAG +
Preference number: 4 (lower is better)
Translates to: AIGDEGWSVRREEGRLPRRKGEW*ELILIE
Trigger: CTCAATCAGTATTAGTTCCCACCATTCCCCTTTTCT...CCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGGTGCCTGTATCTAGCTaGGTGTTATTTAAGGTGAAT +
Preference number: 4 (lower is better)
Translates to: AIGDEGWSVRREEGRLPRVPVSS*VLFKVN
Trigger: ATTCACCTTAAATAACACCCAGCTAGATACAGGCAC...CCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp CGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTACGTTGACATAAGGTaGGACTCTACAAGCTTCAAA +
Preference number: 4 (lower is better)
Translates to: RGMVSEAGRGPAPEVSKGYVDIR*DSTSFK
Trigger: TTTGAAGCTTGTAGAGTCGCACCTTATGTCAACGTA...CCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp CCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGAGCCACGGACCCAGGGCTGCGGCGTaGTTTTTGGCTTTCAGTCTG +
Preference number: 4 (lower is better)
Translates to: PTKPNSRPSSRKTGRSHGPRAAA*FLAFSL
Trigger: CAGACTGAAAGCCAAAAAGCACGCCGCAGCCCTGGG...TCCGTGGCTCCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp CCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGAGCCACGGACCATCGTTGCAGCTTTaGGGTGAGCCAAACTCCGCG +
Preference number: 4 (lower is better)
Translates to: PTKPNSRPSSRKTGRSHGPSLQL*GEPNSA
Trigger: CGCGGAGTTTGGCTCACCGCAAAGCTGCAACGATGG...TCCGTGGCTCCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GGCAGGAGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTTATACCTCTTCTTTCTaGTTTGCCTTCTTAGCGCAT +
Preference number: 4 (lower is better)
Translates to: GRSHGACVPREIPGPAWSYTSSF*FAFLAH
Trigger: ATGCGCTAAGAAGGCAAAGCAGAAAGAAGAGGTATA...ACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GGCAGGAGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTTTTGACAATTCTTCCTaGGGAGAGTTCAGATCTGAT +
Preference number: 4 (lower is better)
Translates to: GRSHGACVPREIPGPAWSFDNSS*GEFRSD
Trigger: ATCAGATCTGAACTCTCCGCAGGAAGAATTGTCAAA...ACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000483851.7
CDS-3UTR CCA 90 bp GCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCAGACCTCAGCTTTCGTTaGCTTCCTTCTACCCTCCGT +
Preference number: 4 (lower is better)
Translates to: AWSLAFRVQDAIGDEGWSDLSFR*LPSTLR
Trigger: ACGGAGGGTAGAAGGAAGCCAACGAAAGCTGAGGTC...TGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000389589.8
CDS-3UTR CCA 90 bp TTTTTCTATGCAAGAGTCCATCGTTGCAGCTTTGCGGTGAGCCAAACTCCGCGGGGACAGGCGCGACATTaGTGCTGGCGTTGGCGTCAC +
Preference number: 4 (lower is better)
Translates to: FFYARVHRCSFAVSQTPRGQARH*CWRWRH
Trigger: GTGACGCCAACGCCAGCACCAATGTCGCGCCTGTCC...CCGCGGAGTTTGGCTCACCGCAAAGCTGCAACGATGGACTCTTGCATAGAAAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGCTCTCGAGAATCGTCTaGGTTGTTTTTCCATATTTT +
Preference number: 4 (lower is better)
Translates to: AIGDEGWSVRREEGRLPRLSRIV*VVFPYF
Trigger: AAAATATGGAAAAACAACCCAGACGATTCTCGAGAG...CCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp AAACCCGCTCCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGTCAGTTCCTCTCGCATaGAGGCGTCGGGATAGTGGG +
Preference number: 4 (lower is better)
Translates to: KPAPTKPNSRPSSRKTGRSVPLA*RRRDSG
Trigger: CCCACTATCCCGACGCCTTCATGCGAGAGGAACTGA...CCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGGAGCGGGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp CCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGAGCCACGGAGGCTGGCGGCCCCTATaGGAACACCTTTATGGAGTT +
Preference number: 4 (lower is better)
Translates to: PTKPNSRPSSRKTGRSHGGWRPL*EHLYGV
Trigger: AACTCCATAAAGGTGTTCTCATAGGGGCCGCCAGCC...TCCGTGGCTCCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp GCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCATTTTGGCTTTCAGTCTaGGATCGGCGATGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: AWSLAFRVQDAIGDEGWSFWLSV*DRRCWS
Trigger: ACTCCAGCATCGCCGATCTCAGACTGAAAGCCAAAA...TGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp TCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTTTGCGTGCGCGGCCAGGTaGGGATGCAGGTGGTGGTGC +
Preference number: 4 (lower is better)
Translates to: SQKKVSFKTCELPSCALFACAAR*GCRWWC
Trigger: GCACCACCACCTGCATCCGCACCTGGCCGCGCACGC...AAAAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp CTTCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTGGTGGTCTTGGCGGCTaGTGCGGCCGCCACTACCGA +
Preference number: 4 (lower is better)
Translates to: LRRKRSVSKPVNFPAAHFGGLGG*CGRHYR
Trigger: TCGGTAGTGGCGGCCGCAGCAGCCGCCAAGACCACC...AAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp CCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGAGCCACGGATCACAGACCCAGGGCTaGGGCGTGCTTTTTGGCTTT +
Preference number: 4 (lower is better)
Translates to: PTKPNSRPSSRKTGRSHGSQTQG*GVLFGF
Trigger: AAAGCCAAAAAGCACGCCGCAGCCCTGGGTCTGTGA...TCCGTGGCTCCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp AAACCCGCTCCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGCCATCGTTGCAGCTTTaGGGTGAGCCAAACTCCGCG +
Preference number: 4 (lower is better)
Translates to: KPAPTKPNSRPSSRKTGRPSLQL*GEPNSA
Trigger: CGCGGAGTTTGGCTCACCGCAAAGCTGCAACGATGG...CCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGGAGCGGGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGGGCGCCTCTTCTTTCTGCTTTaGCTTCTTAGCGCATTTTTA +
Preference number: 4 (lower is better)
Translates to: EEGRLPRSQRGNGEAAGRLFFLL*LLSAFL
Trigger: TAAAAATGCGCTAAGAAGGCAAAGCAGAAAGAAGAG...GCGCCCCGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp AGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTTATACCTCTTCTTTCTaGTTTGCCTTCTTAGCGCAT +
Preference number: 4 (lower is better)
Translates to: SHGACVPREIPGPAWSLAYTSSF*FAFLAH
Trigger: ATGCGCTAAGAAGGCAAAGCAGAAAGAAGAGGTATA...AGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GGCAGGAGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCAGTCCAGACAGTTTTaGCATAATAATTTCTCAGAG +
Preference number: 4 (lower is better)
Translates to: GRSHGACVPREIPGPAWSQSRQF*HNNFSE
Trigger: CTCTGAGAAATTATTATGGCAAAACTGTCTGGACTG...ACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGGGCGCGGAATACAAGTAACATaGAAACCGGAATTTACTGTC +
Preference number: 4 (lower is better)
Translates to: EEGRLPRSQRGNGEAAGRGIQVT*KPEFTV
Trigger: GACAGTAAATTCCGGTTTGCATGTTACTTGTATTCC...GCGCCCCGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp CCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGAGCCACGGAAGAAGCAGCGTAGCCTaGACCTCAGCTTTCGTTGGC +
Preference number: 4 (lower is better)
Translates to: PTKPNSRPSSRKTGRSHGRSSVA*TSAFVG
Trigger: GCCAACGAAAGCTGAGGTCCAGGCTACGCTGCTTCT...TCCGTGGCTCCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000389589.8
CDS-3UTR CCA 90 bp TTTTTCTATGCAAGAGTCCATCGTTGCAGCTTTGCGGTGAGCCAAACTCCGCGGGACAGGCCCAGTCGCTaGCTCAGTTCCTCTCGCATG +
Preference number: 4 (lower is better)
Translates to: FFYARVHRCSFAVSQTPRDRPSR*LSSSRM
Trigger: CATGCGAGAGGAACTGAGCCAGCGACTGGGCCTGTC...CCGCGGAGTTTGGCTCACCGCAAAGCTGCAACGATGGACTCTTGCATAGAAAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp TTTTTCTATGCAAGAGTCCATCGTTGCAGCTTTGCGGTGAGCCAAACTCCGCGGTGGAGTTCTTGCTGGTaGTCTTGGCGGCTGCTGCGG +
Preference number: 4 (lower is better)
Translates to: FFYARVHRCSFAVSQTPRWSSCW*SWRLLR
Trigger: CCGCAGCAGCCGCCAAGACCACCAGCAAGAACTCCA...CCGCGGAGTTTGGCTCACCGCAAAGCTGCAACGATGGACTCTTGCATAGAAAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp TTTTTCTATGCAAGAGTCCATCGTTGCAGCTTTGCGGTGAGCCAAACTCCGCGGCATTGGTGCTGGCGTTaGCGTCACAGACCCAGGGCT +
Preference number: 4 (lower is better)
Translates to: FFYARVHRCSFAVSQTPRHWCWR*RHRPRA
Trigger: AGCCCTGGGTCTGTGACGCCAACGCCAGCACCAATG...CCGCGGAGTTTGGCTCACCGCAAAGCTGCAACGATGGACTCTTGCATAGAAAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp AAACCCGCTCCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGATCCCTGGTCCTGCGTaGAGTCTGGCTTTCCGAGTC +
Preference number: 4 (lower is better)
Translates to: KPAPTKPNSRPSSRKTGRIPGPA*SLAFRV
Trigger: GACTCGGAAAGCCAGACTCCACGCAGGACCAGGGAT...CCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGGAGCGGGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGGGCGCTTTGTTTTTGCTCCTTaGTTCTCCAATTTCAGCTTC +
Preference number: 4 (lower is better)
Translates to: EEGRLPRSQRGNGEAAGRFVFAP*FSNFSF
Trigger: GAAGCTGAAATTGGAGAACCAAGGAGCAAAAACAAA...GCGCCCCGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGGGCGCGAGACACACCATCAATaGAATACAAGTAACATGCAA +
Preference number: 4 (lower is better)
Translates to: EEGRLPRSQRGNGEAAGRETHHQ*NTSNMQ
Trigger: TTGCATGTTACTTGTATTCCATTGATGGTGTGTCTC...GCGCCCCGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp CGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGACAAGAAAAGGGGAATaGTGGGAACTAATACTGATT +
Preference number: 4 (lower is better)
Translates to: RGMVSEAGRGPAPEVSKGTRKGE*WELILI
Trigger: AATCAGTATTAGTTCCCACCATTCCCCTTTTCTTGT...CCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp CAAATTTCTCGTGTTAACGTGAACTTCGCAGAAAAAGGTCAGTTTCAAAACCTGGGAGGGCGTGCAGGCTaGGTGCCGCGGGACAGGCGC +
Preference number: 4 (lower is better)
Translates to: QISRVNVNFAEKGQFQNLGGRAG*VPRDRR
Trigger: GCGCCTGTCCCGCGGCACTCAGCCTGCACGCCCTCC...CAGGTTTTGAAACTGACCTTTTTCTGCGAAGTTCACGTTAACACGAGAAATTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp AATTGGGATACAGACTGGCTTAGTCCAAGGTATCCCAGTTTAAATAGCTACATGGGCTGCCCGGCTCCCTaGTTCTCTCGGCGGCGCCCA +
Preference number: 4 (lower is better)
Translates to: NWDTDWLSPRYPSLNSYMGCPAP*FSRRRP
Trigger: TGGGCGCCGCCGAGAGAAGCAGGGAGCCGGGCAGCC...CATGTAGCTATTTAAACTGGGATACCTTGGACTAAGCCAGTCTGTATCCCAATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp TCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTTTCCGTCAGTCGCGGGCTaGCCGGCTCCCTGCTTCTCT +
Preference number: 4 (lower is better)
Translates to: SQKKVSFKTCELPSCALFPSVAG*PAPCFS
Trigger: AGAGAAGCAGGGAGCCGGGCAGCCCGCGACTGACGG...AAAAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000389589.8
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp CAAATAGGACTTCAGGAAACCAACAAGAAGGAACACAAGAAAAGGGGAATGGTGGGCGTGCAGGCTGAGTaGCGCGGGACAGGCGCGACA +
Preference number: 4 (lower is better)
Translates to: QIGLQETNKKEHKKRGMVGVQAE*RGTGAT
Trigger: TGTCGCGCCTGTCCCGCGGCACTCAGCCTGCACGCC...CACCATTCCCCTTTTCTTGTGTTCCTTCTTGTTGGTTTCCTGAAGTCCTATTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp AGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGCAGTCCAGACAGTTTTaGCATAATAATTTCTCAGAG +
Preference number: 4 (lower is better)
Translates to: RREEGRLPRSQRGNGEAAQSRQF*HNNFSE
Trigger: CTCTGAGAAATTATTATGGCAAAACTGTCTGGACTG...CGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp CCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGAGCCACGGACTACAAGCTTCAAACTaGCTGGCGGCCCCTATGAGA +
Preference number: 4 (lower is better)
Translates to: PTKPNSRPSSRKTGRSHGLQASN*LAAPMR
Trigger: TCTCATAGGGGCCGCCAGCCAGTTTGAAGCTTGTAG...TCCGTGGCTCCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp TCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTTTAATCCGCGGCCAGCGTaGCGAGCGGCAGTCCGAAGG +
Preference number: 4 (lower is better)
Translates to: SQKKVSFKTCELPSCALFNPRPA*RAAVRR
Trigger: CCTTCGGACTGCCGCTCGCCACGCTGGCCGCGGATT...AAAAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp TTTTTCTATGCAAGAGTCCATCGTTGCAGCTTTGCGGTGAGCCAAACTCCGCGGTGCTGGAGTTCTTGCTaGTGGTCTTGGCGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: FFYARVHRCSFAVSQTPRCWSSC*WSWRLL
Trigger: CAGCAGCCGCCAAGACCACCAGCAAGAACTCCAGCA...CCGCGGAGTTTGGCTCACCGCAAAGCTGCAACGATGGACTCTTGCATAGAAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp AGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTTTTGTTTTTGCTCCTTaGTTCTCCAATTTCAGCTTC +
Preference number: 4 (lower is better)
Translates to: SHGACVPREIPGPAWSLAFVFAP*FSNFSF
Trigger: GAAGCTGAAATTGGAGAACCAAGGAGCAAAAACAAA...AGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp AGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTCTCTCGAGAATCGTCTaGGTTGTTTTTCCATATTTT +
Preference number: 4 (lower is better)
Translates to: SHGACVPREIPGPAWSLALSRIV*VVFPYF
Trigger: AAAATATGGAAAAACAACCCAGACGATTCTCGAGAG...AGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp AGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTGAGACACACCATCAATaGAATACAAGTAACATGCAA +
Preference number: 4 (lower is better)
Translates to: SHGACVPREIPGPAWSLAETHHQ*NTSNMQ
Trigger: TTGCATGTTACTTGTATTCCATTGATGGTGTGTCTC...AGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp AAACCCGCTCCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGGACTTCGCCTCTGCTTaGTTTTGGTCTGGCCTTCGT +
Preference number: 4 (lower is better)
Translates to: KPAPTKPNSRPSSRKTGRDFASA*FWSGLR
Trigger: ACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTC...CCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGGAGCGGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp CCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGAGCCACGGATTTTGGCTTTCAGTCTaGGATCGGCGATGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: PTKPNSRPSSRKTGRSHGFWLSV*DRRCWS
Trigger: ACTCCAGCATCGCCGATCTCAGACTGAAAGCCAAAA...TCCGTGGCTCCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp TCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTTTGCCACGGAGCCTGCGTaGCTCGTGAGATCCCTGGTC +
Preference number: 4 (lower is better)
Translates to: SQKKVSFKTCELPSCALFATEPA*LVRSLV
Trigger: GACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGC...AAAAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp AAACCCGCTCCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGGCAAGAGTCCATCGTTaGAGCTTTGCGGTGAGCCAA +
Preference number: 4 (lower is better)
Translates to: KPAPTKPNSRPSSRKTGRARVHR*SFAVSQ
Trigger: TTGGCTCACCGCAAAGCTGCAACGATGGACTCTTGC...CCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGGAGCGGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp AAACCCGCTCCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGCAGTTTCAAAACCTGTaGACTTCCCAGCTGCGCACT +
Preference number: 4 (lower is better)
Translates to: KPAPTKPNSRPSSRKTGRQFQNL*TSQLRT
Trigger: AGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTG...CCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGGAGCGGGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp CCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGAGCCACGGAACAAGGGCGTCACGTTaGAATGACTATCCTGCTGAA +
Preference number: 4 (lower is better)
Translates to: PTKPNSRPSSRKTGRSHGTRASR*NDYPAE
Trigger: TTCAGCAGGATAGTCATTGCAACGTGACGCCCTTGT...TCCGTGGCTCCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000389589.8
ENST00000441443.6
CDS-3UTR GCA 90 bp TTTCTTGCTCTTCCATACATGGTGGGTTTAAACTCAAAGCATCTGATTCAACGTGCGTGCGCGGCCAGGTaGGGATGCAGGTGGTGGTGC +
Preference number: 4 (lower is better)
Translates to: FLALPYMVGLNSKHLIQRACAAR*GCRWWC
Trigger: GCACCACCACCTGCATCCGCACCTGGCCGCGCACGC...ACGTTGAATCAGATGCTTTGAGTTTAAACCCACCATGTATGGAAGAGCAAGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GAATTGGAGGCGACACATTTTGTACTGACAACACGTCATGAGATAACATCTTTTGCGTGCGCGGCCAGGTaGGGATGCAGGTGGTGGTGC +
Preference number: 4 (lower is better)
Translates to: ELEATHFVLTTRHEITSFACAAR*GCRWWC
Trigger: GCACCACCACCTGCATCCGCACCTGGCCGCGCACGC...AAAAGATGTTATCTCATGACGTGTTGTCAGTACAAAATGTGTCGCCTCCAATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp CAAATTTCTCGTGTTAACGTGAACTTCGCAGAAAAAGGTCAGTTTCAAAACCTGGGTCTTGGCGGCTGCTaGGGCCGCCACTACCGAGGC +
Preference number: 4 (lower is better)
Translates to: QISRVNVNFAEKGQFQNLGLGGC*GRHYRG
Trigger: GCCTCGGTAGTGGCGGCCGCAGCAGCCGCCAAGACC...CAGGTTTTGAAACTGACCTTTTTCTGCGAAGTTCACGTTAACACGAGAAATTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp CAAATTTCTCGTGTTAACGTGAACTTCGCAGAAAAAGGTCAGTTTCAAAACCTGGGCGTGCAGGCTGAGTaGCGCGGGACAGGCGCGACA +
Preference number: 4 (lower is better)
Translates to: QISRVNVNFAEKGQFQNLGVQAE*RGTGAT
Trigger: TGTCGCGCCTGTCCCGCGGCACTCAGCCTGCACGCC...CAGGTTTTGAAACTGACCTTTTTCTGCGAAGTTCACGTTAACACGAGAAATTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp TTTTTCTATGCAAGAGTCCATCGTTGCAGCTTTGCGGTGAGCCAAACTCCGCGGGCAAGAGTCCATCGTTaGAGCTTTGCGGTGAGCCAA +
Preference number: 4 (lower is better)
Translates to: FFYARVHRCSFAVSQTPRARVHR*SFAVSQ
Trigger: TTGGCTCACCGCAAAGCTGCAACGATGGACTCTTGC...CCGCGGAGTTTGGCTCACCGCAAAGCTGCAACGATGGACTCTTGCATAGAAAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp TTTTTCTATGCAAGAGTCCATCGTTGCAGCTTTGCGGTGAGCCAAACTCCGCGGAATGGAGTGAGTGCATaGGAGATAAGGGGGTGGGAG +
Preference number: 4 (lower is better)
Translates to: FFYARVHRCSFAVSQTPRNGVSA*EIRGWE
Trigger: CTCCCACCCCCTTATCTCCCATGCACTCACTCCATT...CCGCGGAGTTTGGCTCACCGCAAAGCTGCAACGATGGACTCTTGCATAGAAAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp TTTTTCTATGCAAGAGTCCATCGTTGCAGCTTTGCGGTGAGCCAAACTCCGCGGTTTTGGCTTTCAGTCTaGGATCGGCGATGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: FFYARVHRCSFAVSQTPRFWLSV*DRRCWS
Trigger: ACTCCAGCATCGCCGATCTCAGACTGAAAGCCAAAA...CCGCGGAGTTTGGCTCACCGCAAAGCTGCAACGATGGACTCTTGCATAGAAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp AATTGGGATACAGACTGGCTTAGTCCAAGGTATCCCAGTTTAAATAGCTACATGAGCCTGCGTGCCTCGTaGGATCCCTGGTCCTGCGTG +
Preference number: 4 (lower is better)
Translates to: NWDTDWLSPRYPSLNSYMSLRAS*DPWSCV
Trigger: CACGCAGGACCAGGGATCTCACGAGGCACGCAGGCT...CATGTAGCTATTTAAACTGGGATACCTTGGACTAAGCCAGTCTGTATCCCAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp CCTGGTCCTGCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGGTATATTCGAGAGAGTaGTACGCATTAATCAAAAGG +
Preference number: 4 (lower is better)
Translates to: PGPAWSLAFRVQDAIGDEVYSRE*YALIKR
Trigger: CCTTTTGATTAATGCGTATCACTCTCTCGAATATAC...CTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGCAGGACCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000483851.7
CDS-3UTR GCA 90 bp GAATTGGAGGCGACACATTTTGTACTGACAACACGTCATGAGATAACATCTTTTGGTGGTCTTGGCGGCTaGTGCGGCCGCCACTACCGA +
Preference number: 4 (lower is better)
Translates to: ELEATHFVLTTRHEITSFGGLGG*CGRHYR
Trigger: TCGGTAGTGGCGGCCGCAGCAGCCGCCAAGACCACC...AAAAGATGTTATCTCATGACGTGTTGTCAGTACAAAATGTGTCGCCTCCAATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp CTTCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTCGATGCTGGAGTTCTTaGTGGTGGTCTTGGCGGCTG +
Preference number: 4 (lower is better)
Translates to: LRRKRSVSKPVNFPAAHFRCWSS*WWSWRL
Trigger: CAGCCGCCAAGACCACCAGCAAGAACTCCAGCATCG...AAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp CAAATTTCTCGTGTTAACGTGAACTTCGCAGAAAAAGGTCAGTTTCAAAACCTGAGCCTGCGTGCCTCGTaGGATCCCTGGTCCTGCGTG +
Preference number: 4 (lower is better)
Translates to: QISRVNVNFAEKGQFQNLSLRAS*DPWSCV
Trigger: CACGCAGGACCAGGGATCTCACGAGGCACGCAGGCT...CAGGTTTTGAAACTGACCTTTTTCTGCGAAGTTCACGTTAACACGAGAAATTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp CCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGAGCCACGGATTTCTCGTGTTAACGTaGACTTCGCAGAAAAAGGTC +
Preference number: 4 (lower is better)
Translates to: PTKPNSRPSSRKTGRSHGFLVLT*TSQKKV
Trigger: GACCTTTTTCTGCGAAGTTCACGTTAACACGAGAAA...TCCGTGGCTCCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GAATTGGAGGCGACACATTTTGTACTGACAACACGTCATGAGATAACATCTTTTCCGGCGCTCAACCTCTaGCAGCAGAGCCCCGCTCTT +
Preference number: 4 (lower is better)
Translates to: ELEATHFVLTTRHEITSFPALNL*QQSPAL
Trigger: AAGAGCGGGGCTCTGCTGGCAGAGGTTGAGCGCCGG...AAAAGATGTTATCTCATGACGTGTTGTCAGTACAAAATGTGTCGCCTCCAATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000483851.7
CDS-3UTR GCA 90 bp TCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTTTCCCAGGGCTGCGGCGTaGTTTTTGGCTTTCAGTCTG +
Preference number: 4 (lower is better)
Translates to: SQKKVSFKTCELPSCALFPRAAA*FLAFSL
Trigger: CAGACTGAAAGCCAAAAAGCACGCCGCAGCCCTGGG...AAAAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp CTTCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTTCACAGACCCAGGGCTaGGGCGTGCTTTTTGGCTTT +
Preference number: 4 (lower is better)
Translates to: LRRKRSVSKPVNFPAAHFSQTQG*GVLFGF
Trigger: AAAGCCAAAAAGCACGCCGCAGCCCTGGGTCTGTGA...AAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCACTCTTCTTTCTGCTTTaGCTTCTTAGCGCATTTTTA +
Preference number: 4 (lower is better)
Translates to: AWSLAFRVQDAIGDEGWSLFFLL*LLSAFL
Trigger: TAAAAATGCGCTAAGAAGGCAAAGCAGAAAGAAGAG...TGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp TTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGCTCTTCTTTCTGCTTTaGCTTCTTAGCGCATTTTTA +
Preference number: 4 (lower is better)
Translates to: FRVQDAIGDEGWSVRREELFFLL*LLSAFL
Trigger: TAAAAATGCGCTAAGAAGGCAAAGCAGAAAGAAGAG...CTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp CAAATTTCTCGTGTTAACGTGAACTTCGCAGAAAAAGGTCAGTTTCAAAACCTGTCTTGCTGGTGGTCTTaGCGGCTGCTGCGGCCGCCA +
Preference number: 4 (lower is better)
Translates to: QISRVNVNFAEKGQFQNLSCWWS*RLLRPP
Trigger: TGGCGGCCGCAGCAGCCGCCAAGACCACCAGCAAGA...CAGGTTTTGAAACTGACCTTTTTCTGCGAAGTTCACGTTAACACGAGAAATTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCATTTGTTTTTGCTCCTTaGTTCTCCAATTTCAGCTTC +
Preference number: 4 (lower is better)
Translates to: AWSLAFRVQDAIGDEGWSFVFAP*FSNFSF
Trigger: GAAGCTGAAATTGGAGAACCAAGGAGCAAAAACAAA...TGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp TTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGCTCTCGAGAATCGTCTaGGTTGTTTTTCCATATTTT +
Preference number: 4 (lower is better)
Translates to: FRVQDAIGDEGWSVRREELSRIV*VVFPYF
Trigger: AAAATATGGAAAAACAACCCAGACGATTCTCGAGAG...CTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp TTTTTCTATGCAAGAGTCCATCGTTGCAGCTTTGCGGTGAGCCAAACTCCGCGGGGCTTGCTAGCGAATTaGGATACAGACTGGCTTAGT +
Preference number: 4 (lower is better)
Translates to: FFYARVHRCSFAVSQTPRGLLAN*DTDWLS
Trigger: ACTAAGCCAGTCTGTATCCCAATTCGCTAGCAAGCC...CCGCGGAGTTTGGCTCACCGCAAAGCTGCAACGATGGACTCTTGCATAGAAAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp TTTTTCTATGCAAGAGTCCATCGTTGCAGCTTTGCGGTGAGCCAAACTCCGCGGTTAAAGCACCTACGTTaGCATAAGGTGCGACTCTAC +
Preference number: 4 (lower is better)
Translates to: FFYARVHRCSFAVSQTPRLKHLR*HKVRLY
Trigger: GTAGAGTCGCACCTTATGTCAACGTAGGTGCTTTAA...CCGCGGAGTTTGGCTCACCGCAAAGCTGCAACGATGGACTCTTGCATAGAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp TCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTTTTCACAGACCCAGGGCTaGGGCGTGCTTTTTGGCTTT +
Preference number: 4 (lower is better)
Translates to: SQKKVSFKTCELPSCALFSQTQG*GVLFGF
Trigger: AAAGCCAAAAAGCACGCCGCAGCCCTGGGTCTGTGA...AAAAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGA
49% GC, longest homopolymer 6 nt, total homopolymer stretches 20 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp CTTCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTCTACAAGCTTCAAACTaGCTGGCGGCCCCTATGAGA +
Preference number: 4 (lower is better)
Translates to: LRRKRSVSKPVNFPAAHFLQASN*LAAPMR
Trigger: TCTCATAGGGGCCGCCAGCCAGTTTGAAGCTTGTAG...AAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp CAAGTTGGTATATTCGAGAGAGTGATACGCATTAATCAAAAGGGAAAGACTATCTCTTGCTGGTGGTCTTaGCGGCTGCTGCGGCCGCCA +
Preference number: 4 (lower is better)
Translates to: QVGIFERVIRINQKGKTISCWWS*RLLRPP
Trigger: TGGCGGCCGCAGCAGCCGCCAAGACCACCAGCAAGA...GATAGTCTTTCCCTTTTGATTAATGCGTATCACTCTCTCGAATATACCAACTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000483851.7
CDS-3UTR CCA 90 bp GAATTGGAGGCGACACATTTTGTACTGACAACACGTCATGAGATAACATCTTTTGCGCGACATTGGTGCTaGCGTTGGCGTCACAGACCC +
Preference number: 4 (lower is better)
Translates to: ELEATHFVLTTRHEITSFARHWC*RWRHRP
Trigger: GGGTCTGTGACGCCAACGCCAGCACCAATGTCGCGC...AAAAGATGTTATCTCATGACGTGTTGTCAGTACAAAATGTGTCGCCTCCAATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp CAAATAGGACTTCAGGAAACCAACAAGAAGGAACACAAGAAAAGGGGAATGGTGATAGGGGACGAGGGATaGTCAGTGAGGCGGGAAGAG +
Preference number: 4 (lower is better)
Translates to: QIGLQETNKKEHKKRGMVIGDEG*SVRREE
Trigger: CTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTAT...CACCATTCCCCTTTTCTTGTGTTCCTTCTTGTTGGTTTCCTGAAGTCCTATTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp CTTCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTTGGGAGATAAGGGGGTaGGAGGAGACACACCATCAA +
Preference number: 4 (lower is better)
Translates to: LRRKRSVSKPVNFPAAHFWEIRG*EETHHQ
Trigger: TTGATGGTGTGTCTCCTCCCACCCCCTTATCTCCCA...AAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp GAATTGGAGGCGACACATTTTGTACTGACAACACGTCATGAGATAACATCTTTTGTTGCAGCTTTGCGGTaGGCCAAACTCCGCGGTTCC +
Preference number: 4 (lower is better)
Translates to: ELEATHFVLTTRHEITSFVAALR*AKLRGS
Trigger: GGAACCGCGGAGTTTGGCTCACCGCAAAGCTGCAAC...AAAAGATGTTATCTCATGACGTGTTGTCAGTACAAAATGTGTCGCCTCCAATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp AATTGGGATACAGACTGGCTTAGTCCAAGGTATCCCAGTTTAAATAGCTACATGCCCAGGGCTGCGGCGTaGTTTTTGGCTTTCAGTCTG +
Preference number: 4 (lower is better)
Translates to: NWDTDWLSPRYPSLNSYMPRAAA*FLAFSL
Trigger: CAGACTGAAAGCCAAAAAGCACGCCGCAGCCCTGGG...CATGTAGCTATTTAAACTGGGATACCTTGGACTAAGCCAGTCTGTATCCCAATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp TTTCTTGCTCTTCCATACATGGTGGGTTTAAACTCAAAGCATCTGATTCAACGTGACAGGCCCAGTCGCTaGCTCAGTTCCTCTCGCATG +
Preference number: 4 (lower is better)
Translates to: FLALPYMVGLNSKHLIQRDRPSR*LSSSRM
Trigger: CATGCGAGAGGAACTGAGCCAGCGACTGGGCCTGTC...ACGTTGAATCAGATGCTTTGAGTTTAAACCCACCATGTATGGAAGAGCAAGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp TTTCTTGCTCTTCCATACATGGTGGGTTTAAACTCAAAGCATCTGATTCAACGTTGGAGTTCTTGCTGGTaGTCTTGGCGGCTGCTGCGG +
Preference number: 4 (lower is better)
Translates to: FLALPYMVGLNSKHLIQRWSSCW*SWRLLR
Trigger: CCGCAGCAGCCGCCAAGACCACCAGCAAGAACTCCA...ACGTTGAATCAGATGCTTTGAGTTTAAACCCACCATGTATGGAAGAGCAAGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp CCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGAGCCACGGATTTGTTTTTGCTCCTTaGTTCTCCAATTTCAGCTTC +
Preference number: 4 (lower is better)
Translates to: PTKPNSRPSSRKTGRSHGFVFAP*FSNFSF
Trigger: GAAGCTGAAATTGGAGAACCAAGGAGCAAAAACAAA...TCCGTGGCTCCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp CAAACCGGAATTTACTGTCAGCAGTCCAGACAGTTTTGCCATAATAATTTCTCTTCAGTTCCTCTCGCATaGAGGCGTCGGGATAGTGGG +
Preference number: 4 (lower is better)
Translates to: QTGIYCQQSRQFCHNNFSSVPLA*RRRDSG
Trigger: CCCACTATCCCGACGCCTTCATGCGAGAGGAACTGA...AGAGAAATTATTATGGCAAAACTGTCTGGACTGCTGACAGTAAATTCCGGTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000425436.7
CDS-3UTR TCA 90 bp TTTCTTGCTCTTCCATACATGGTGGGTTTAAACTCAAAGCATCTGATTCAACGTTCAGTTCCTCTCGCATaGAGGCGTCGGGATAGTGGG +
Preference number: 4 (lower is better)
Translates to: FLALPYMVGLNSKHLIQRSVPLA*RRRDSG
Trigger: CCCACTATCCCGACGCCTTCATGCGAGAGGAACTGA...ACGTTGAATCAGATGCTTTGAGTTTAAACCCACCATGTATGGAAGAGCAAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp TTTCTTGCTCTTCCATACATGGTGGGTTTAAACTCAAAGCATCTGATTCAACGTCGATGCTGGAGTTCTTaGTGGTGGTCTTGGCGGCTG +
Preference number: 4 (lower is better)
Translates to: FLALPYMVGLNSKHLIQRRCWSS*WWSWRL
Trigger: CAGCCGCCAAGACCACCAGCAAGAACTCCAGCATCG...ACGTTGAATCAGATGCTTTGAGTTTAAACCCACCATGTATGGAAGAGCAAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp CAAATTTCTCGTGTTAACGTGAACTTCGCAGAAAAAGGTCAGTTTCAAAACCTGCCCAGGGCTGCGGCGTaGTTTTTGGCTTTCAGTCTG +
Preference number: 4 (lower is better)
Translates to: QISRVNVNFAEKGQFQNLPRAAA*FLAFSL
Trigger: CAGACTGAAAGCCAAAAAGCACGCCGCAGCCCTGGG...CAGGTTTTGAAACTGACCTTTTTCTGCGAAGTTCACGTTAACACGAGAAATTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp TTTCTTGCTCTTCCATACATGGTGGGTTTAAACTCAAAGCATCTGATTCAACGTCCATCGTTGCAGCTTTaGGGTGAGCCAAACTCCGCG +
Preference number: 4 (lower is better)
Translates to: FLALPYMVGLNSKHLIQRPSLQL*GEPNSA
Trigger: CGCGGAGTTTGGCTCACCGCAAAGCTGCAACGATGG...ACGTTGAATCAGATGCTTTGAGTTTAAACCCACCATGTATGGAAGAGCAAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp AAACCCGCTCCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGCAGTCCAGACAGTTTTaGCATAATAATTTCTCTCTC +
Preference number: 4 (lower is better)
Translates to: KPAPTKPNSRPSSRKTGRQSRQF*HNNFSL
Trigger: GAGAGAGAAATTATTATGGCAAAACTGTCTGGACTG...CCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGGAGCGGGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000425436.7
CDS-3UTR GCA 90 bp AAACCCGCTCCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGGGAATACAAGTAACATaGAAACCGGAATTTACTGTC +
Preference number: 4 (lower is better)
Translates to: KPAPTKPNSRPSSRKTGRGIQVT*KPEFTV
Trigger: GACAGTAAATTCCGGTTTGCATGTTACTTGTATTCC...CCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGGAGCGGGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp ATTTACTGTCAGCAGTCCAGACAGTTTTGCCATAATAATTTCTCTCTCCTCGTTATCCCTGGTCCTGCGTaGAGTCTGGCTTTCCGAGTC +
Preference number: 4 (lower is better)
Translates to: IYCQQSRQFCHNNFSLLVIPGPA*SLAFRV
Trigger: GACTCGGAAAGCCAGACTCCACGCAGGACCAGGGAT...AACGAGGAGAGAGAAATTATTATGGCAAAACTGTCTGGACTGCTGACAGTAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000425436.7
CDS-3UTR TCA 90 bp GTAACATGCAAACCGGAATTTACTGTCAGCAGTCCAGACAGTTTTGCCATAATAGACTTCGCCTCTGCTTaGTTTTGGTCTGGCCTTCGT +
Preference number: 4 (lower is better)
Translates to: VTCKPEFTVSSPDSFAIIDFASA*FWSGLR
Trigger: ACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTC...TATTATGGCAAAACTGTCTGGACTGCTGACAGTAAATTCCGGTTTGCATGTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp CAAACCGGAATTTACTGTCAGCAGTCCAGACAGTTTTGCCATAATAATTTCTCTGACTTCGCCTCTGCTTaGTTTTGGTCTGGCCTTCGT +
Preference number: 4 (lower is better)
Translates to: QTGIYCQQSRQFCHNNFSDFASA*FWSGLR
Trigger: ACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTC...AGAGAAATTATTATGGCAAAACTGTCTGGACTGCTGACAGTAAATTCCGGTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000425436.7
CDS-3UTR GCA 90 bp CAAATTTCTCGTGTTAACGTGAACTTCGCAGAAAAAGGTCAGTTTCAAAACCTGCTTTCGCATCCTCTTTaGGATCTTTCAGCTCCGGGG +
Preference number: 4 (lower is better)
Translates to: QISRVNVNFAEKGQFQNLLSHPL*DLSAPG
Trigger: CCCCGGAGCTGAAAGATCGCAAAGAGGATGCGAAAG...CAGGTTTTGAAACTGACCTTTTTCTGCGAAGTTCACGTTAACACGAGAAATTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp CAAATTTCTCGTGTTAACGTGAACTTCGCAGAAAAAGGTCAGTTTCAAAACCTGGTCCGACTTCGCCTCTaGTTGATTTTGGTCTGGCCT +
Preference number: 4 (lower is better)
Translates to: QISRVNVNFAEKGQFQNLVRLRL*LILVWP
Trigger: AGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGAC...CAGGTTTTGAAACTGACCTTTTTCTGCGAAGTTCACGTTAACACGAGAAATTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp TTTCTTGCTCTTCCATACATGGTGGGTTTAAACTCAAAGCATCTGATTCAACGTGTCCGACTTCGCCTCTaGTTGATTTTGGTCTGGCCT +
Preference number: 4 (lower is better)
Translates to: FLALPYMVGLNSKHLIQRVRLRL*LILVWP
Trigger: AGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGAC...ACGTTGAATCAGATGCTTTGAGTTTAAACCCACCATGTATGGAAGAGCAAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp CAAATTTCTCGTGTTAACGTGAACTTCGCAGAAAAAGGTCAGTTTCAAAACCTGCTACAAGCTTCAAACTaGCTGGCGGCCCCTATGAGA +
Preference number: 4 (lower is better)
Translates to: QISRVNVNFAEKGQFQNLLQASN*LAAPMR
Trigger: TCTCATAGGGGCCGCCAGCCAGTTTGAAGCTTGTAG...CAGGTTTTGAAACTGACCTTTTTCTGCGAAGTTCACGTTAACACGAGAAATTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp CAAATTTCTCGTGTTAACGTGAACTTCGCAGAAAAAGGTCAGTTTCAAAACCTGAATGGAGTGAGTGCATaGGAGATAAGGGGGTGGGAG +
Preference number: 4 (lower is better)
Translates to: QISRVNVNFAEKGQFQNLNGVSA*EIRGWE
Trigger: CTCCCACCCCCTTATCTCCCATGCACTCACTCCATT...CAGGTTTTGAAACTGACCTTTTTCTGCGAAGTTCACGTTAACACGAGAAATTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp CAAATAGGACTTCAGGAAACCAACAAGAAGGAACACAAGAAAAGGGGAATGGTGGGCTTGCTAGCGAATTaGGATACAGACTGGCTTAGT +
Preference number: 4 (lower is better)
Translates to: QIGLQETNKKEHKKRGMVGLLAN*DTDWLS
Trigger: ACTAAGCCAGTCTGTATCCCAATTCGCTAGCAAGCC...CACCATTCCCCTTTTCTTGTGTTCCTTCTTGTTGGTTTCCTGAAGTCCTATTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp CAAATAGGACTTCAGGAAACCAACAAGAAGGAACACAAGAAAAGGGGAATGGTGTTAAAGCACCTACGTTaGCATAAGGTGCGACTCTAC +
Preference number: 4 (lower is better)
Translates to: QIGLQETNKKEHKKRGMVLKHLR*HKVRLY
Trigger: GTAGAGTCGCACCTTATGTCAACGTAGGTGCTTTAA...CACCATTCCCCTTTTCTTGTGTTCCTTCTTGTTGGTTTCCTGAAGTCCTATTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp CAAATTTCTCGTGTTAACGTGAACTTCGCAGAAAAAGGTCAGTTTCAAAACCTGTTTTGGCTTTCAGTCTaGGATCGGCGATGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: QISRVNVNFAEKGQFQNLFWLSV*DRRCWS
Trigger: ACTCCAGCATCGCCGATCTCAGACTGAAAGCCAAAA...CAGGTTTTGAAACTGACCTTTTTCTGCGAAGTTCACGTTAACACGAGAAATTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp TTTCTTGCTCTTCCATACATGGTGGGTTTAAACTCAAAGCATCTGATTCAACGTCAGTTTCAAAACCTGTaGACTTCCCAGCTGCGCACT +
Preference number: 4 (lower is better)
Translates to: FLALPYMVGLNSKHLIQRQFQNL*TSQLRT
Trigger: AGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTG...ACGTTGAATCAGATGCTTTGAGTTTAAACCCACCATGTATGGAAGAGCAAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp GTAACATGCAAACCGGAATTTACTGTCAGCAGTCCAGACAGTTTTGCCATAATAACAAGGGCGTCACGTTaGAATGACTATCCTGCTGAA +
Preference number: 4 (lower is better)
Translates to: VTCKPEFTVSSPDSFAIITRASR*NDYPAE
Trigger: TTCAGCAGGATAGTCATTGCAACGTGACGCCCTTGT...TATTATGGCAAAACTGTCTGGACTGCTGACAGTAAATTCCGGTTTGCATGTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000441443.6
CDS-3UTR GCA 90 bp CAAGTTGGTATATTCGAGAGAGTGATACGCATTAATCAAAAGGGAAAGACTATCTTTCCGAGTCCAAGATaGGATAGGGGACGAGGGATG +
Preference number: 4 (lower is better)
Translates to: QVGIFERVIRINQKGKTIFPSPR*DRGRGM
Trigger: CATCCCTCGTCCCCTATCGCATCTTGGACTCGGAAA...GATAGTCTTTCCCTTTTGATTAATGCGTATCACTCTCTCGAATATACCAACTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000483851.7
CDS-3UTR GCA 90 bp CTTCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTCTCTTCTTTCTGCTTTaGCTTCTTAGCGCATTTTTA +
Preference number: 4 (lower is better)
Translates to: LRRKRSVSKPVNFPAAHFLFFLL*LLSAFL
Trigger: TAAAAATGCGCTAAGAAGGCAAAGCAGAAAGAAGAG...AAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp TCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTTTTATACCTCTTCTTTCTaGTTTGCCTTCTTAGCGCAT +
Preference number: 4 (lower is better)
Translates to: SQKKVSFKTCELPSCALFYTSSF*FAFLAH
Trigger: ATGCGCTAAGAAGGCAAAGCAGAAAGAAGAGGTATA...AAAAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGA
42% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp CTTCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTACAAGAAAAGGGGAATaGTGGGAACTAATACTGATT +
Preference number: 4 (lower is better)
Translates to: LRRKRSVSKPVNFPAAHFTRKGE*WELILI
Trigger: AATCAGTATTAGTTCCCACCATTCCCCTTTTCTTGT...AAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GTAACATGCAAACCGGAATTTACTGTCAGCAGTCCAGACAGTTTTGCCATAATAAATTGGGATACAGACTaGCTTAGTCCAAGGTATCCC +
Preference number: 4 (lower is better)
Translates to: VTCKPEFTVSSPDSFAIINWDTD*LSPRYP
Trigger: GGGATACCTTGGACTAAGCCAGTCTGTATCCCAATT...TATTATGGCAAAACTGTCTGGACTGCTGACAGTAAATTCCGGTTTGCATGTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp AATTGGGATACAGACTGGCTTAGTCCAAGGTATCCCAGTTTAAATAGCTACATGTTTCTCGTGTTAACGTaGACTTCGCAGAAAAAGGTC +
Preference number: 4 (lower is better)
Translates to: NWDTDWLSPRYPSLNSYMFLVLT*TSQKKV
Trigger: GACCTTTTTCTGCGAAGTTCACGTTAACACGAGAAA...CATGTAGCTATTTAAACTGGGATACCTTGGACTAAGCCAGTCTGTATCCCAATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GAATTGGAGGCGACACATTTTGTACTGACAACACGTCATGAGATAACATCTTTTAATTGGGATACAGACTaGCTTAGTCCAAGGTATCCC +
Preference number: 4 (lower is better)
Translates to: ELEATHFVLTTRHEITSFNWDTD*LSPRYP
Trigger: GGGATACCTTGGACTAAGCCAGTCTGTATCCCAATT...AAAAGATGTTATCTCATGACGTGTTGTCAGTACAAAATGTGTCGCCTCCAATTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR TCA 90 bp CAAATTTCTCGTGTTAACGTGAACTTCGCAGAAAAAGGTCAGTTTCAAAACCTGTTTCTCGTGTTAACGTaGACTTCGCAGAAAAAGGTC +
Preference number: 4 (lower is better)
Translates to: QISRVNVNFAEKGQFQNLFLVLT*TSQKKV
Trigger: GACCTTTTTCTGCGAAGTTCACGTTAACACGAGAAA...CAGGTTTTGAAACTGACCTTTTTCTGCGAAGTTCACGTTAACACGAGAAATTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp TTTCTTGCTCTTCCATACATGGTGGGTTTAAACTCAAAGCATCTGATTCAACGTTACGTTGACATAAGGTaGGACTCTACAAGCTTCAAA +
Preference number: 4 (lower is better)
Translates to: FLALPYMVGLNSKHLIQRYVDIR*DSTSFK
Trigger: TTTGAAGCTTGTAGAGTCGCACCTTATGTCAACGTA...ACGTTGAATCAGATGCTTTGAGTTTAAACCCACCATGTATGGAAGAGCAAGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR GCA 90 bp CAAACCGGAATTTACTGTCAGCAGTCCAGACAGTTTTGCCATAATAATTTCTCTTACGTTGACATAAGGTaGGACTCTACAAGCTTCAAA +
Preference number: 4 (lower is better)
Translates to: QTGIYCQQSRQFCHNNFSYVDIR*DSTSFK
Trigger: TTTGAAGCTTGTAGAGTCGCACCTTATGTCAACGTA...AGAGAAATTATTATGGCAAAACTGTCTGGACTGCTGACAGTAAATTCCGGTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000425436.7
CDS-3UTR GCA 90 bp GAATTGGAGGCGACACATTTTGTACTGACAACACGTCATGAGATAACATCTTTTTATACCTCTTCTTTCTaGTTTGCCTTCTTAGCGCAT +
Preference number: 4 (lower is better)
Translates to: ELEATHFVLTTRHEITSFYTSSF*FAFLAH
Trigger: ATGCGCTAAGAAGGCAAAGCAGAAAGAAGAGGTATA...AAAAGATGTTATCTCATGACGTGTTGTCAGTACAAAATGTGTCGCCTCCAATTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GAATTGGAGGCGACACATTTTGTACTGACAACACGTCATGAGATAACATCTTTTAGAAAAGGGGAATGGTaGGAACTAATACTGATTGAG +
Preference number: 4 (lower is better)
Translates to: ELEATHFVLTTRHEITSFRKGEW*ELILIE
Trigger: CTCAATCAGTATTAGTTCCCACCATTCCCCTTTTCT...AAAAGATGTTATCTCATGACGTGTTGTCAGTACAAAATGTGTCGCCTCCAATTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CCA 90 bp GAATTGGAGGCGACACATTTTGTACTGACAACACGTCATGAGATAACATCTTTTGTGCCTGTATCTAGCTaGGTGTTATTTAAGGTGAAT +
Preference number: 4 (lower is better)
Translates to: ELEATHFVLTTRHEITSFVPVSS*VLFKVN
Trigger: ATTCACCTTAAATAACACCCAGCTAGATACAGGCAC...AAAAGATGTTATCTCATGACGTGTTGTCAGTACAAAATGTGTCGCCTCCAATTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS GCA 90 bp GTCCAGCTCCCGGACGGGAGAGCGCCCTCCTCCAGCTCCTCCGCCTaGTCCTCCTCCTCCTACACCTCCTCCGCCTCCTCCGCCGCCGCC +
Preference number: 5 (lower is better)
Translates to: VQLPDGRAPSSSSSA*SSSSYTSSASSAAA
Trigger: GGCGGCGGCGGAGGAGGCGGAGGAGGTGTAGGAGGAGGAGGAGCAGGCGGAGGAGCTGGAGGAGGGCGCTCTCCCGTCCGGGAGCTGGAC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000389589.8
ENST00000441443.6
ENST00000483851.7
CDS GCA 90 bp GCCCGACCGGGGTCGCACGAGCACAGGCGCCCACGCCATGTTGGCTaGCCAAAGGGCTCGCCGCCCAAGCCGGGCCAGAAGGCAGGAGGC +
Preference number: 5 (lower is better)
Translates to: ARPGSHEHRRPRHVG*PKGSPPKPGQKAGG
Trigger: GCCTCCTGCCTTCTGGCCCGGCTTGGGCGGCGAGCCCTTTGGGCAGCCAACATGGCGTGGGCGCCTGTGCTCGTGCGACCCCGGTCGGGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CCA 90 bp GCCTGCCCGACCGGGGTCGCACGAGCACAGGCGCCCACGCCATGTTaGCTGCCCAAAGGGCTCGCCGCCCAAGCCGGGCCAGAAGGCAGG +
Preference number: 5 (lower is better)
Translates to: ACPTGVARAQAPTPC*LPKGLAAQAGPEGR
Trigger: CCTGCCTTCTGGCCCGGCTTGGGCGGCGAGCCCTTTGGGCAGCCAACATGGCGTGGGCGCCTGTGCTCGTGCGACCCCGGTCGGGCAGGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS GCA 90 bp TCAGCTCCGGGGACACCTCCGTCAGTCGCGGGCTGCCCGGCTCCCTaGTTCTCTCGGCGGCGCCCATGTCCAGCTCCCGGACGGGAGAGC +
Preference number: 5 (lower is better)
Translates to: SAPGTPPSVAGCPAP*FSRRRPCPAPGRES
Trigger: GCTCTCCCGTCCGGGAGCTGGACATGGGCGCCGCCGAGAGAAGCAGGGAGCCGGGCAGCCCGCGACTGACGGAGGTGTCCCCGGAGCTGA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS GCA 90 bp GGGGTAACGGAGAAGCAGCGGGGCGCGGAGGGCGTGCAGGCTGAGTaGCGCGGGACAGGCGCGACATTGGTGCTGGCGTTGGCGTCACAG +
Preference number: 5 (lower is better)
Translates to: GVTEKQRGAEGVQAE*RGTGATLVLALASQ
Trigger: CTGTGACGCCAACGCCAGCACCAATGTCGCGCCTGTCCCGCGGCACTCAGCCTGCACGCCCTCCGCGCCCCGCTGCTTCTCCGTTACCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
ENST00000490689.3
CDS GCA 90 bp TTGGCTTCCTTCTACCCTCCGTCAGTCGCGGGCTGCCCGGCTCCCTaGTTCTCTCGGCGGCGCCCATGTCCAGCTCCCGGACGGGAGAGC +
Preference number: 5 (lower is better)
Translates to: LASFYPPSVAGCPAP*FSRRRPCPAPGRES
Trigger: GCTCTCCCGTCCGGGAGCTGGACATGGGCGCCGCCGAGAGAAGCAGGGAGCCGGGCAGCCCGCGACTGACGGAGGGTAGAAGGAAGCCAA
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000389589.8
CDS GCA 90 bp CGGTGTTGTGCCGCACAGGGAGCCGCATCCGCAGACGCCCCTCGCTaGCCCTGGGCTCGGGCCAAACCCTGCATAAGGTCCCCTGGACAG +
Preference number: 5 (lower is better)
Translates to: RCCAAQGAASADAPR*PWARAKPCIRSPGQ
Trigger: CTGTCCAGGGGACCTTATGCAGGGTTTGGCCCGAGCCCAGGGGCAGCGAGGGGCGTCTGCGGATGCGGCTCCCTGTGCGGCACAACACCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS GCA 90 bp CCCTGCATAAGGTCCCCTGGACAGCCAGGTAATCTCCGTCCCGCCTaGCCGACCGGGGTCGCACGAGCACAGGCGCCCACGCCATGTTGG +
Preference number: 5 (lower is better)
Translates to: PCIRSPGQPGNLRPA*PTGVARAQAPTPCW
Trigger: CCAACATGGCGTGGGCGCCTGTGCTCGTGCGACCCCGGTCGGGCAGGCGGGACGGAGATTACCTGGCTGTCCAGGGGACCTTATGCAGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CCA 90 bp AGGGCGTGCAGGCTGAGTGCCGCGGGACAGGCGCGACATTGGTGCTaGCGTTGGCGTCACAGACCCAGGGCTGCGGCGTGCTTTTTGGCT +
Preference number: 5 (lower is better)
Translates to: RACRLSAAGQARHWC*RWRHRPRAAACFLA
Trigger: AGCCAAAAAGCACGCCGCAGCCCTGGGTCTGTGACGCCAACGCCAGCACCAATGTCGCGCCTGTCCCGCGGCACTCAGCCTGCACGCCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
ENST00000490689.3
CDS-3UTR CAA 90 bp AGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTTTCTTGCTGGTGGTCTaGGCGGCTGCTGCGGCCGCC +
Preference number: 5 (lower is better)
Translates to: SHGACVPREIPGPAWSLAFLLVV*AAAAAA
Trigger: GGCGGCCGCAGCAGCCGCCAAGACCACCAGCAAGAA...AGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp AGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGTTCTTGCTGGTGGTCTaGGCGGCTGCTGCGGCCGCC +
Preference number: 5 (lower is better)
Translates to: RREEGRLPRSQRGNGEAAFLLVV*AAAAAA
Trigger: GGCGGCCGCAGCAGCCGCCAAGACCACCAGCAAGAA...CGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp GAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGGGCGCGGGACAGGCGCGACATaGGTGCTGGCGTTGGCGTCA +
Preference number: 5 (lower is better)
Translates to: EEGRLPRSQRGNGEAAGRGTGAT*VLALAS
Trigger: TGACGCCAACGCCAGCACCAATGTCGCGCCTGTCCC...GCGCCCCGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp GGCAGGAGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTACATTGGTGCTGGCGTaGGCGTCACAGACCCAGGGC +
Preference number: 5 (lower is better)
Translates to: GRSHGACVPREIPGPAWSTLVLA*ASQTQG
Trigger: GCCCTGGGTCTGTGACGCCAACGCCAGCACCAATGT...ACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCTGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp AGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGGGACAGGCGCGACATaGGTGCTGGCGTTGGCGTCA +
Preference number: 5 (lower is better)
Translates to: RREEGRLPRSQRGNGEAAGTGAT*VLALAS
Trigger: TGACGCCAACGCCAGCACCAATGTCGCGCCTGTCCC...CGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS GCA 90 bp GAAGAGGAGAGGGAGGAGGAGGAGGAGAAGAGAAGGGGCGGGGGCTaGCGGAGGGAAATGGGAACTGATGCTTCCCTGCCGGAGCGCGCT +
Preference number: 5 (lower is better)
Translates to: EEEREEEEEKRRGGG*RREMGTDASLPERA
Trigger: AGCGCGCTCCGGCAGGGAAGCATCAGTTCCCATTTCCCTCCGGCAGCCCCCGCCCCTTCTCTTCTCCTCCTCCTCCTCCCTCTCCTCTTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000483851.7
CDS CCA 90 bp GCCCAAGCCGGGCCAGAAGGCAGGAGGCGGAAAACCAGCCTCCGGTaGCGGGCGAAAGCAACCGCTCTTTCTGTTCTCTCTTCGCCCTCC +
Preference number: 5 (lower is better)
Translates to: AQAGPEGRRRKTSLR*RAKATALSVLSSPS
Trigger: GGAGGGCGAAGAGAGAACAGAAAGAGCGGTTGCTTTCGCCCGCCACCGGAGGCTGGTTTTCCGCCTCCTGCCTTCTGGCCCGGCTTGGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CCA 90 bp GCAAGGCCACCCACTGGCCTCTCACACCGGCCATTCCCAGAAGGCTaGCTCGTTCTCAGGCCAGCTCTCACCACCGCTGGCTCTCTGCCT +
Preference number: 5 (lower is better)
Translates to: ARPPTGLSHRPFPEG*LVLRPALTTAGSLP
Trigger: AGGCAGAGAGCCAGCGGTGGTGAGAGCTGGCCTGAGAACGAGCCAGCCTTCTGGGAATGGCCGGTGTGAGAGGCCAGTGGGTGGCCTTGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS-3UTR CAA 90 bp GCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGCGCCTCTGCTTGATTTaGGTCTGGCCTTCGTCCTCC +
Preference number: 5 (lower is better)
Translates to: AIGDEGWSVRREEGRLPRRLCLI*VWPSSS
Trigger: GGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCG...CCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp CGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGGCGATGCTGGAGTTCTaGCTGGTGGTCTTGGCGGCT +
Preference number: 5 (lower is better)
Translates to: RGMVSEAGRGPAPEVSKGAMLEF*LVVLAA
Trigger: AGCCGCCAAGACCACCAGCAAGAACTCCAGCATCGC...CCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp AGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGACATTGGTGCTGGCGTaGGCGTCACAGACCCAGGGC +
Preference number: 5 (lower is better)
Translates to: RREEGRLPRSQRGNGEAATLVLA*ASQTQG
Trigger: GCCCTGGGTCTGTGACGCCAACGCCAGCACCAATGT...CGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS CCA 90 bp TGCAGGCTGAGTGCCGCGGGACAGGCGCGACATTGGTGCTGGCGTTaGCGTCACAGACCCAGGGCTGCGGCGTGCTTTTTGGCTTTCAGT +
Preference number: 5 (lower is better)
Translates to: CRLSAAGQARHWCWR*RHRPRAAACFLAFS
Trigger: ACTGAAAGCCAAAAAGCACGCCGCAGCCCTGGGTCTGTGACGCCAACGCCAGCACCAATGTCGCGCCTGTCCCGCGGCACTCAGCCTGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
ENST00000490689.3
CDS-3UTR CAA 90 bp GGCAGGAGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCGCCTCTGCTTGATTTaGGTCTGGCCTTCGTCCTCC +
Preference number: 5 (lower is better)
Translates to: GRSHGACVPREIPGPAWSRLCLI*VWPSSS
Trigger: GGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCG...ACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCTGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp GCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGCGACTTCGCCTCTGCTaGATTTTGGTCTGGCCTTCG +
Preference number: 5 (lower is better)
Translates to: AIGDEGWSVRREEGRLPRRLRLC*ILVWPS
Trigger: CGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCG...CCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp GCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGGCTGCGGCGTGCTTTTaGGCTTTCAGTCTGAGATCG +
Preference number: 5 (lower is better)
Translates to: AIGDEGWSVRREEGRLPRAAACF*AFSLRS
Trigger: CGATCTCAGACTGAAAGCCAAAAAGCACGCCGCAGC...CCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS TCA 90 bp CCCACCCGGAGGAAGAATATCCCGGAGAAGCGCAAAGGTCAAGTCTaGGCGGCCGCCTGGGGCAAGGTGGGCAGTCATCCACCACCTCCT +
Preference number: 5 (lower is better)
Translates to: PTRRKNIPEKRKGQV*AAAWGKVGSHPPPP
Trigger: AGGAGGTGGTGGATGACTGCCCACCTTGCCCCAGGCGGCCGCTCAGACTTGACCTTTGCGCTTCTCCGGGATATTCTTCCTCCGGGTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS-3UTR CAA 90 bp GAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGGGCGCCGACTTCGCCTCTGCTaGATTTTGGTCTGGCCTTCG +
Preference number: 5 (lower is better)
Translates to: EEGRLPRSQRGNGEAAGRRLRLC*ILVWPS
Trigger: CGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCG...GCGCCCCGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp GAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGGGCGCTGTTCCAGGGTGAAATaGGTCCGACTTCGCCTCTGC +
Preference number: 5 (lower is better)
Translates to: EEGRLPRSQRGNGEAAGRCSRVK*VRLRLC
Trigger: GCAGAGGCGAAGTCGGACCAATTTCACCCTGGAACA...GCGCCCCGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp CGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTGTTCCAGGGTGAAATaGGTCCGACTTCGCCTCTGC +
Preference number: 5 (lower is better)
Translates to: RGMVSEAGRGPAPEVSKGCSRVK*VRLRLC
Trigger: GCAGAGGCGAAGTCGGACCAATTTCACCCTGGAACA...CCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp GAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGGGCGCGCTGCGGCGTGCTTTTaGGCTTTCAGTCTGAGATCG +
Preference number: 5 (lower is better)
Translates to: EEGRLPRSQRGNGEAAGRAAACF*AFSLRS
Trigger: CGATCTCAGACTGAAAGCCAAAAAGCACGCCGCAGC...GCGCCCCGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS CCA 90 bp GACACAAGAAACCGAAACGCCTCGCCCGGGAGAAGCAGCGTAGCCTaGACCTCAGCTTTCGTTGGCTTCCTTCCTCCGTCAGTCGCGGGC +
Preference number: 5 (lower is better)
Translates to: DTRNRNASPGRSSVA*TSAFVGFLPPSVAG
Trigger: GCCCGCGACTGACGGAGGAAGGAAGCCAACGAAAGCTGAGGTCCAGGCTACGCTGCTTCTCCCGGGCGAGGCGTTTCGGTTTCTTGTGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554685.2
CDS-3UTR CAA 90 bp AGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTCCTTTCGCATCCTCTTaGCGATCTTTCAGCTCCGGG +
Preference number: 5 (lower is better)
Translates to: SHGACVPREIPGPAWSLAPFASS*RSFSSG
Trigger: CCCGGAGCTGAAAGATCGCAAAGAGGATGCGAAAGG...AGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp AGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGCTGCGGCGTGCTTTTaGGCTTTCAGTCTGAGATCG +
Preference number: 5 (lower is better)
Translates to: RREEGRLPRSQRGNGEAAAAACF*AFSLRS
Trigger: CGATCTCAGACTGAAAGCCAAAAAGCACGCCGCAGC...CGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS CCA 90 bp CGGAGAAGCGCAAAGGTCAAGTCTGAGCGGCCGCCTGGGGCAAGGTaGGCAGTCATCCACCACCTCCTTCACAAACGTACCTCGACTCAC +
Preference number: 5 (lower is better)
Translates to: RRSAKVKSERPPGAR*AVIHHLLHKRTSTH
Trigger: GTGAGTCGAGGTACGTTTGTGAAGGAGGTGGTGGATGACTGCCCACCTTGCCCCAGGCGGCCGCTCAGACTTGACCTTTGCGCTTCTCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS-3UTR CAA 90 bp CGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGAGCCTCTCCAGCTCATaGAGTTGTTCCAGGGTGAAA +
Preference number: 5 (lower is better)
Translates to: RGMVSEAGRGPAPEVSKGSLSSS*SCSRVK
Trigger: TTTCACCCTGGAACAACTCAATGAGCTGGAGAGGCT...CCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp GGCAGGAGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTAGCCTCTCCAGCTCATaGAGTTGTTCCAGGGTGAAA +
Preference number: 5 (lower is better)
Translates to: GRSHGACVPREIPGPAWSSLSSS*SCSRVK
Trigger: TTTCACCCTGGAACAACTCAATGAGCTGGAGAGGCT...ACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCTCCTGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp GAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGGGGCGCAGCCTCTCCAGCTCATaGAGTTGTTCCAGGGTGAAA +
Preference number: 5 (lower is better)
Translates to: EEGRLPRSQRGNGEAAGRSLSSS*SCSRVK
Trigger: TTTCACCCTGGAACAACTCAATGAGCTGGAGAGGCT...GCGCCCCGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS CCA 90 bp GACACAAGAAACCGAAACGCCTCGCCCGGGAGAAGCAGCGTAGCCTaGACCTCAGCTTTCGTTGGCTTCCTTCTACCCTCCGTCAGTCGC +
Preference number: 5 (lower is better)
Translates to: DTRNRNASPGRSSVA*TSAFVGFLLPSVSR
Trigger: GCGACTGACGGAGGGTAGAAGGAAGCCAACGAAAGCTGAGGTCCAGGCTACGCTGCTTCTCCCGGGCGAGGCGTTTCGGTTTCTTGTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000389589.8
CDS-3UTR CAA 90 bp GCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCAGCGATGCTGGAGTTCTaGCTGGTGGTCTTGGCGGCT +
Preference number: 5 (lower is better)
Translates to: AWSLAFRVQDAIGDEGWSAMLEF*LVVLAA
Trigger: AGCCGCCAAGACCACCAGCAAGAACTCCAGCATCGC...TGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp TTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGGACCTCAGCTTTCGTaGGCTTCCTTCTACCCTCCG +
Preference number: 5 (lower is better)
Translates to: FRVQDAIGDEGWSVRREEGPQLS*ASFYPP
Trigger: CGGAGGGTAGAAGGAAGCCAACGAAAGCTGAGGTCC...CTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000389589.8
CDS-3UTR CAA 90 bp TTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGCCTTTCGCATCCTCTTaGCGATCTTTCAGCTCCGGG +
Preference number: 5 (lower is better)
Translates to: FRVQDAIGDEGWSVRREEPFASS*RSFSSG
Trigger: CCCGGAGCTGAAAGATCGCAAAGAGGATGCGAAAGG...CTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp GCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCACCTTTCGCATCCTCTTaGCGATCTTTCAGCTCCGGG +
Preference number: 5 (lower is better)
Translates to: AWSLAFRVQDAIGDEGWSPFASS*RSFSSG
Trigger: CCCGGAGCTGAAAGATCGCAAAGAGGATGCGAAAGG...TGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp TTCCGAGTCCAAGATGCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGCGACTTCGCCTCTGCTaGATTTTGGTCTGGCCTTCG +
Preference number: 5 (lower is better)
Translates to: FRVQDAIGDEGWSVRREERLRLC*ILVWPS
Trigger: CGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCG...CTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGCATCTTGGACTCGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS GCA 90 bp AAGGCTGGCTCGTTCTCAGGCCAGCTCTCACCACCGCTGGCTCTCTaGCTACCGCAAACTTGCTGGTCTAATTTAGGAACAATTGGGCCG +
Preference number: 5 (lower is better)
Translates to: KAGSFSGQLSPPLAL*LPQTCWSNLGTIGP
Trigger: CGGCCCAATTGTTCCTAAATTAGACCAGCAAGTTTGCGGTAGGCAGAGAGCCAGCGGTGGTGAGAGCTGGCCTGAGAACGAGCCAGCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CCA 90 bp CGCCTCGCCCGGGAGAAGCAGCGTAGCCTGGACCTCAGCTTTCGTTaGCTTCCTTCTACCTTGAAAGAGAATGGGAAGTTTTGGCCCCTA +
Preference number: 5 (lower is better)
Translates to: RLAREKQRSLDLSFR*LPSTLKENGKFWPL
Trigger: TAGGGGCCAAAACTTCCCATTCTCTTTCAAGGTAGAAGGAAGCCAACGAAAGCTGAGGTCCAGGCTACGCTGCTTCTCCCGGGCGAGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS-3UTR CAA 90 bp AAACCCGCTCCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGGCGATGCTGGAGTTCTaGCTGGTGGTCTTGGCGGCT +
Preference number: 5 (lower is better)
Translates to: KPAPTKPNSRPSSRKTGRAMLEF*LVVLAA
Trigger: AGCCGCCAAGACCACCAGCAAGAACTCCAGCATCGC...CCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGGAGCGGGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp TTTTTCTATGCAAGAGTCCATCGTTGCAGCTTTGCGGTGAGCCAAACTCCGCGGACATTGGTGCTGGCGTaGGCGTCACAGACCCAGGGC +
Preference number: 5 (lower is better)
Translates to: FFYARVHRCSFAVSQTPRTLVLA*ASQTQG
Trigger: GCCCTGGGTCTGTGACGCCAACGCCAGCACCAATGT...CCGCGGAGTTTGGCTCACCGCAAAGCTGCAACGATGGACTCTTGCATAGAAAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp GCGATAGGGGACGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGAAAGGTTTAACAGAATaGGAGGCGACACATTTTGTA +
Preference number: 5 (lower is better)
Translates to: AIGDEGWSVRREEGRLPRKGLTE*EATHFV
Trigger: TACAAAATGTGTCGCCTCCAATTCTGTTAAACCTTT...CCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCGTCCCCTATCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS GCA 90 bp TCCCCAGCAAACACCAAATGGTTTCCACTCACTTTCGCACTCACTTaGTCCGCAGCACTCACAGAAATCAAAGGCGCAGCGCCAGGCCTC +
Preference number: 5 (lower is better)
Translates to: SPANTKWFPLTFALT*SAALTEIKGAAPGL
Trigger: GAGGCCTGGCGCTGCGCCTTTGATTTCTGTGAGTGCTGCGGAGCAAGTGAGTGCGAAAGTGAGTGGAAACCATTTGGTGTTTGCTGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CCA 90 bp GGCCAGCTCTCACCACCGCTGGCTCTCTGCCTACCGCAAACTTGCTaGTCTAATTTAGGAACAATTGGGCCGAAAGGTATCAGCGAGAGC +
Preference number: 5 (lower is better)
Translates to: GQLSPPLALCLPQTC*SNLGTIGPKGISES
Trigger: GCTCTCGCTGATACCTTTCGGCCCAATTGTTCCTAAATTAGACCAGCAAGTTTGCGGTAGGCAGAGAGCCAGCGGTGGTGAGAGCTGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS-3UTR CAA 90 bp AAACCCGCTCCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGCGCCTCTGCTTGATTTaGGTCTGGCCTTCGTCCTCC +
Preference number: 5 (lower is better)
Translates to: KPAPTKPNSRPSSRKTGRRLCLI*VWPSSS
Trigger: GGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCG...CCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGGAGCGGGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp CCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGAGCCACGGATGCAAGAGTCCATCGTaGCAGCTTTGCGGTGAGCCA +
Preference number: 5 (lower is better)
Translates to: PTKPNSRPSSRKTGRSHGCKSPS*QLCGEP
Trigger: TGGCTCACCGCAAAGCTGCAACGATGGACTCTTGCA...TCCGTGGCTCCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp CGAGGGATGGTCAGTGAGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGATTTGTTTTTGCTCCTaGGTTCTCCAATTTCAGCTT +
Preference number: 5 (lower is better)
Translates to: RGMVSEAGRGPAPEVSKGICFCS*VLQFQL
Trigger: AAGCTGAAATTGGAGAACCAAGGAGCAAAAACAAAT...CCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCTCACTGACCATCCCTCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS TCA 90 bp GCTGCGCCTGAACCTGCTGAAATGGCATCCTTAAAGCACCTACGTTaGCATAAGGTGCGACTCTACAAGCTTCAAACTGGCTGGCGGCCC +
Preference number: 5 (lower is better)
Translates to: AAPEPAEMASLKHLR*HKVRLYKLQTGWRP
Trigger: GGGCCGCCAGCCAGTTTGAAGCTTGTAGAGTCGCACCTTATGTCAACGTAGGTGCTTTAAGGATGCCATTTCAGCAGGTTCAGGCGCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000425436.7
ENST00000483851.7
CDS GCA 90 bp TCAGGCCAGCTCTCACCACCGCTGGCTCTCTGCCTACCGCAAACTTaGTGGTCTAATTTAGGAACAATTGGGCCGAAAGGTATCAGCGAG +
Preference number: 5 (lower is better)
Translates to: SGQLSPPLALCLPQT*WSNLGTIGPKGISE
Trigger: CTCGCTGATACCTTTCGGCCCAATTGTTCCTAAATTAGACCAGCAAGTTTGCGGTAGGCAGAGAGCCAGCGGTGGTGAGAGCTGGCCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CCA 90 bp GGGCGAAAGCAACCGCTCTTTCTGTTCTCTCTTCGCCCTCCCTCGTaGAAACGCAGACTCGACCCTAAACGCTTAACCCACAGAGATCAA +
Preference number: 5 (lower is better)
Translates to: GRKQPLFLFSLRPPS*KRRLDPKRLTHRDQ
Trigger: TTGATCTCTGTGGGTTAAGCGTTTAGGGTCGAGTCTGCGTTTCCACGAGGGAGGGCGAAGAGAGAACAGAAAGAGCGGTTGCTTTCGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS-3UTR CAA 90 bp AAACCCGCTCCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGCGACTTCGCCTCTGCTaGATTTTGGTCTGGCCTTCG +
Preference number: 5 (lower is better)
Translates to: KPAPTKPNSRPSSRKTGRRLRLC*ILVWPS
Trigger: CGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCG...CCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGGAGCGGGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp AGCCACGGAGCCTGCGTGCCTCGTGAGATCCCTGGTCCTGCGTGGAGTCTGGCTATTTGTTTTTGCTCCTaGGTTCTCCAATTTCAGCTT +
Preference number: 5 (lower is better)
Translates to: SHGACVPREIPGPAWSLAICFCS*VLQFQL
Trigger: AAGCTGAAATTGGAGAACCAAGGAGCAAAAACAAAT...AGCCAGACTCCACGCAGGACCAGGGATCTCACGAGGCACGCAGGCTCCGTGGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp AGGCGGGAAGAGGGCCGGCTCCCGAGGTCTCAAAGGGGTAACGGAGAAGCAGCGATTTGTTTTTGCTCCTaGGTTCTCCAATTTCAGCTT +
Preference number: 5 (lower is better)
Translates to: RREEGRLPRSQRGNGEAAICFCS*VLQFQL
Trigger: AAGCTGAAATTGGAGAACCAAGGAGCAAAAACAAAT...CGCTGCTTCTCCGTTACCCCTTTGAGACCTCGGGAGCCGGCCCTCTTCCCGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS TCA 90 bp CGCCTGAACTTGCCTGCTGAAATGGCATCCTTAAAGCACCTACGTTaGCATAAGGTGCGACTCTACAAGCTTCAAACTGGCTGGCGGCCC +
Preference number: 5 (lower is better)
Translates to: RLNLPAEMASLKHLR*HKVRLYKLQTGWRP
Trigger: GGGCCGCCAGCCAGTTTGAAGCTTGTAGAGTCGCACCTTATGTCAACGTAGGTGCTTTAAGGATGCCATTTCAGCAGGCAAGTTCAGGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS-3UTR CAA 90 bp CTTCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTACATTGGTGCTGGCGTaGGCGTCACAGACCCAGGGC +
Preference number: 5 (lower is better)
Translates to: LRRKRSVSKPVNFPAAHFTLVLA*ASQTQG
Trigger: GCCCTGGGTCTGTGACGCCAACGCCAGCACCAATGT...AAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS GCA 90 bp AGCTCATTGAGTTGTTCCAGGGTGAAATTGGTCCGACTTCGCCTCTaGTTGATTTTGGTCTGGCCTTCGTCCTCCATCCCTTTCGCATCC +
Preference number: 5 (lower is better)
Translates to: SSLSCSRVKLVRLRL*LILVWPSSSIPFAS
Trigger: GGATGCGAAAGGGATGGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGACCAATTTCACCCTGGAACAACTCAATGAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
ENST00000490689.3
ENST00000554685.2
CDS CCA 90 bp TCGAGGCTGTTTGCAGTTCTTCCCAGCGCAGGATCCAGGCCAGCATaGGTGTTAAAAATCATTTCCGGAAGAGCCGGTCAAGAAACCGAA +
Preference number: 5 (lower is better)
Translates to: SRLFAVLPSAGSRPA*VLKIISGRAGQETE
Trigger: TTCGGTTTCTTGACCGGCTCTTCCGGAAATGATTTTTAACACCCATGCTGGCCTGGATCCTGCGCTGGGAAGAACTGCAAACAGCCTCGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS-3UTR CAA 90 bp CCTACAAAACCCAATTCTAGGCCCTCGAGTAGGAAAACGGGCAGGAGCCACGGACTCCAGCTCATTGAGTaGTTCCAGGGTGAAATTGGT +
Preference number: 5 (lower is better)
Translates to: PTKPNSRPSSRKTGRSHGLQLIE*FQGEIG
Trigger: ACCAATTTCACCCTGGAACAACTCAATGAGCTGGAG...TCCGTGGCTCCTGCCCGTTTTCCTACTCGAGGGCCTAGAATTGGGTTTTGTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp AATTGGGATACAGACTGGCTTAGTCCAAGGTATCCCAGTTTAAATAGCTACATGTTCTTGCTGGTGGTCTaGGCGGCTGCTGCGGCCGCC +
Preference number: 5 (lower is better)
Translates to: NWDTDWLSPRYPSLNSYMFLLVV*AAAAAA
Trigger: GGCGGCCGCAGCAGCCGCCAAGACCACCAGCAAGAA...CATGTAGCTATTTAAACTGGGATACCTTGGACTAAGCCAGTCTGTATCCCAATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp CCTGGTCCTGCGTGGAGTCTGGCTTTCCGAGTCCAAGATGCGATAGGGGACGAGTCAATGTTAAGATCTTaGACAATTCTTCCTGCGGAG +
Preference number: 5 (lower is better)
Translates to: PGPAWSLAFRVQDAIGDESMLRS*TILPAE
Trigger: CTCCGCAGGAAGAATTGTCAAAGATCTTAACATTGA...CTCGTCCCCTATCGCATCTTGGACTCGGAAAGCCAGACTCCACGCAGGACCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000483851.7
CDS-3UTR CAA 90 bp CTTCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTCGCCTCTGCTTGATTTaGGTCTGGCCTTCGTCCTCC +
Preference number: 5 (lower is better)
Translates to: LRRKRSVSKPVNFPAAHFRLCLI*VWPSSS
Trigger: GGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCG...AAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp CAAATTTCTCGTGTTAACGTGAACTTCGCAGAAAAAGGTCAGTTTCAAAACCTGTTCTTGCTGGTGGTCTaGGCGGCTGCTGCGGCCGCC +
Preference number: 5 (lower is better)
Translates to: QISRVNVNFAEKGQFQNLFLLVV*AAAAAA
Trigger: GGCGGCCGCAGCAGCCGCCAAGACCACCAGCAAGAA...CAGGTTTTGAAACTGACCTTTTTCTGCGAAGTTCACGTTAACACGAGAAATTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS TCA 90 bp TGCAATGACTATCCTGCTGAAATGGCATCCTTAAAGCACCTACGTTaGCATAAGGTGCGACTCTACAAGCTTCAAACTGGCTGGCGGCCC +
Preference number: 5 (lower is better)
Translates to: CNDYPAEMASLKHLR*HKVRLYKLQTGWRP
Trigger: GGGCCGCCAGCCAGTTTGAAGCTTGTAGAGTCGCACCTTATGTCAACGTAGGTGCTTTAAGGATGCCATTTCAGCAGGATAGTCATTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389589.8
ENST00000441443.6
CDS-3UTR CAA 90 bp CTTCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTCCTTTCGCATCCTCTTaGCGATCTTTCAGCTCCGGG +
Preference number: 5 (lower is better)
Translates to: LRRKRSVSKPVNFPAAHFPFASS*RSFSSG
Trigger: CCCGGAGCTGAAAGATCGCAAAGAGGATGCGAAAGG...AAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp CAAATAGGACTTCAGGAAACCAACAAGAAGGAACACAAGAAAAGGGGAATGGTGGCGATGCTGGAGTTCTaGCTGGTGGTCTTGGCGGCT +
Preference number: 5 (lower is better)
Translates to: QIGLQETNKKEHKKRGMVAMLEF*LVVLAA
Trigger: AGCCGCCAAGACCACCAGCAAGAACTCCAGCATCGC...CACCATTCCCCTTTTCTTGTGTTCCTTCTTGTTGGTTTCCTGAAGTCCTATTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp CAAATTTCTCGTGTTAACGTGAACTTCGCAGAAAAAGGTCAGTTTCAAAACCTGGGGACAGGCGCGACATaGGTGCTGGCGTTGGCGTCA +
Preference number: 5 (lower is better)
Translates to: QISRVNVNFAEKGQFQNLGTGAT*VLALAS
Trigger: TGACGCCAACGCCAGCACCAATGTCGCGCCTGTCCC...CAGGTTTTGAAACTGACCTTTTTCTGCGAAGTTCACGTTAACACGAGAAATTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp TCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTTTGCTGCGGCGTGCTTTTaGGCTTTCAGTCTGAGATCG +
Preference number: 5 (lower is better)
Translates to: SQKKVSFKTCELPSCALFAAACF*AFSLRS
Trigger: CGATCTCAGACTGAAAGCCAAAAAGCACGCCGCAGC...AAAAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp CTTCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTAGCCTCTCCAGCTCATaGAGTTGTTCCAGGGTGAAA +
Preference number: 5 (lower is better)
Translates to: LRRKRSVSKPVNFPAAHFSLSSS*SCSRVK
Trigger: TTTCACCCTGGAACAACTCAATGAGCTGGAGAGGCT...AAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp CAAATAGGACTTCAGGAAACCAACAAGAAGGAACACAAGAAAAGGGGAATGGTGTGCAAGAGTCCATCGTaGCAGCTTTGCGGTGAGCCA +
Preference number: 5 (lower is better)
Translates to: QIGLQETNKKEHKKRGMVCKSPS*QLCGEP
Trigger: TGGCTCACCGCAAAGCTGCAACGATGGACTCTTGCA...CACCATTCCCCTTTTCTTGTGTTCCTTCTTGTTGGTTTCCTGAAGTCCTATTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp AATTGGGATACAGACTGGCTTAGTCCAAGGTATCCCAGTTTAAATAGCTACATGTGTTCCAGGGTGAAATaGGTCCGACTTCGCCTCTGC +
Preference number: 5 (lower is better)
Translates to: NWDTDWLSPRYPSLNSYMCSRVK*VRLRLC
Trigger: GCAGAGGCGAAGTCGGACCAATTTCACCCTGGAACA...CATGTAGCTATTTAAACTGGGATACCTTGGACTAAGCCAGTCTGTATCCCAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS CCA 90 bp AGATCAACAGGTTCAAGCGGAATATTCGCGATCCTCGGTTTCTATTaGTTGCTCAAAGCCTTTTCATGCAACCAGCAGCTCGGATGTTTA +
Preference number: 5 (lower is better)
Translates to: RSTGSSGIFAILGFY*LLKAFSCNQQLGCL
Trigger: TAAACATCCGAGCTGCTGGTTGCATGAAAAGGCTTTGAGCAACCAATAGAAACCGAGGATCGCGAATATTCCGCTTGAACCTGTTGATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS-3UTR CAA 90 bp TTTCTTGCTCTTCCATACATGGTGGGTTTAAACTCAAAGCATCTGATTCAACGTTGTTCCAGGGTGAAATaGGTCCGACTTCGCCTCTGC +
Preference number: 5 (lower is better)
Translates to: FLALPYMVGLNSKHLIQRCSRVK*VRLRLC
Trigger: GCAGAGGCGAAGTCGGACCAATTTCACCCTGGAACA...ACGTTGAATCAGATGCTTTGAGTTTAAACCCACCATGTATGGAAGAGCAAGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp TCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTTTCTCCAGCTCATTGAGTaGTTCCAGGGTGAAATTGGT +
Preference number: 5 (lower is better)
Translates to: SQKKVSFKTCELPSCALFLQLIE*FQGEIG
Trigger: ACCAATTTCACCCTGGAACAACTCAATGAGCTGGAG...AAAAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp CAAATTTCTCGTGTTAACGTGAACTTCGCAGAAAAAGGTCAGTTTCAAAACCTGTGCAAGAGTCCATCGTaGCAGCTTTGCGGTGAGCCA +
Preference number: 5 (lower is better)
Translates to: QISRVNVNFAEKGQFQNLCKSPS*QLCGEP
Trigger: TGGCTCACCGCAAAGCTGCAACGATGGACTCTTGCA...CAGGTTTTGAAACTGACCTTTTTCTGCGAAGTTCACGTTAACACGAGAAATTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp TCGCAGAAAAAGGTCAGTTTCAAAACCTGTGAACTTCCCAGCTGCGCACTTTTTCCCACAAACTTAGGCTaGCTAGCGAATTGGGATACA +
Preference number: 5 (lower is better)
Translates to: SQKKVSFKTCELPSCALFPTNLG*LANWDT
Trigger: TGTATCCCAATTCGCTAGCAAGCCTAAGTTTGTGGG...AAAAAGTGCGCAGCTGGGAAGTTCACAGGTTTTGAAACTGACCTTTTTCTGCGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp GTAACATGCAAACCGGAATTTACTGTCAGCAGTCCAGACAGTTTTGCCATAATACTCCAGCTCATTGAGTaGTTCCAGGGTGAAATTGGT +
Preference number: 5 (lower is better)
Translates to: VTCKPEFTVSSPDSFAIILQLIE*FQGEIG
Trigger: ACCAATTTCACCCTGGAACAACTCAATGAGCTGGAG...TATTATGGCAAAACTGTCTGGACTGCTGACAGTAAATTCCGGTTTGCATGTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp GAATTGGAGGCGACACATTTTGTACTGACAACACGTCATGAGATAACATCTTTTCCTGCCGGAGCGCGCTaGTTCAATGTTAAGATCTTT +
Preference number: 5 (lower is better)
Translates to: ELEATHFVLTTRHEITSFPAGAR*FNVKIF
Trigger: AAAGATCTTAACATTGAACAAGCGCGCTCCGGCAGG...AAAAGATGTTATCTCATGACGTGTTGTCAGTACAAAATGTGTCGCCTCCAATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000483851.7
CDS TCA 90 bp TTTCCTGTCCTTCTCCTCCCTTTAAAAACAGGAGCTCTTCTAGTGTaGGCATATACAGCCACCATATATATATCCCCCTGGAACCTTTAT +
Preference number: 5 (lower is better)
Translates to: FPVLLLPLKTGALLV*AYTATIYISPWNLY
Trigger: ATAAAGGTTCCAGGGGGATATATATATGGTGGCTGTATATGCTCACACTAGAAGAGCTCCTGTTTTTAAAGGGAGGAGAAGGACAGGAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS-3UTR CAA 90 bp ATTTACTGTCAGCAGTCCAGACAGTTTTGCCATAATAATTTCTCTCTCCTCGTTCTCCAGCTCATTGAGTaGTTCCAGGGTGAAATTGGT +
Preference number: 5 (lower is better)
Translates to: IYCQQSRQFCHNNFSLLVLQLIE*FQGEIG
Trigger: ACCAATTTCACCCTGGAACAACTCAATGAGCTGGAG...AACGAGGAGAGAGAAATTATTATGGCAAAACTGTCTGGACTGCTGACAGTAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000425436.7
CDS-3UTR CAA 90 bp TTTCTTGCTCTTCCATACATGGTGGGTTTAAACTCAAAGCATCTGATTCAACGTCCCACAAACTTAGGCTaGCTAGCGAATTGGGATACA +
Preference number: 5 (lower is better)
Translates to: FLALPYMVGLNSKHLIQRPTNLG*LANWDT
Trigger: TGTATCCCAATTCGCTAGCAAGCCTAAGTTTGTGGG...ACGTTGAATCAGATGCTTTGAGTTTAAACCCACCATGTATGGAAGAGCAAGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp TTTCTTGCTCTTCCATACATGGTGGGTTTAAACTCAAAGCATCTGATTCAACGTATTTGTTTTTGCTCCTaGGTTCTCCAATTTCAGCTT +
Preference number: 5 (lower is better)
Translates to: FLALPYMVGLNSKHLIQRICFCS*VLQFQL
Trigger: AAGCTGAAATTGGAGAACCAAGGAGCAAAAACAAAT...ACGTTGAATCAGATGCTTTGAGTTTAAACCCACCATGTATGGAAGAGCAAGAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
CDS-3UTR CAA 90 bp TTTCTTGCTCTTCCATACATGGTGGGTTTAAACTCAAAGCATCTGATTCAACGTAAAGGTTTAACAGAATaGGAGGCGACACATTTTGTA +
Preference number: 5 (lower is better)
Translates to: FLALPYMVGLNSKHLIQRKGLTE*EATHFV
Trigger: TACAAAATGTGTCGCCTCCAATTCTGTTAAACCTTT...ACGTTGAATCAGATGCTTTGAGTTTAAACCCACCATGTATGGAAGAGCAAGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS GCA 72 bp GGCGCGTGCGCGGCCAGGTGCGGATGCAGGTGGTGGTaGGCGTGCGCCACAGCGCTGTCCAGCTGCAGCTGC +
Preference number: 6 (lower is better)
Translates to: GACAARCGCRWW*ACATALSSCSC
Trigger: GCAGCTGCAGCTGGACAGCGCTGTGGCGCACGCGCACCACCACCTGCATCCGCACCTGGCCGCGCACGCGCC
75% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
ENST00000490689.3
CDS CAA 72 bp GACCGGGGTCGCACGAGCACAGGCGCCCACGCCATGTaGGCTGCCCAAAGGGCTCGCCGCCCAAGCCGGGCC +
Preference number: 6 (lower is better)
Translates to: DRGRTSTGAHAM*AAQRARRPSRA
Trigger: GGCCCGGCTTGGGCGGCGAGCCCTTTGGGCAGCCAACATGGCGTGGGCGCCTGTGCTCGTGCGACCCCGGTC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CAA 90 bp CGCCTGCCCGACCGGGGTCGCACGAGCACAGGCGCCCACGCCATGTaGGCTGCCCAAAGGGCTCGCCGCCCAAGCCGGGCCAGAAGGCAG +
Preference number: 6 (lower is better)
Translates to: RLPDRGRTSTGAHAM*AAQRARRPSRARRQ
Trigger: CTGCCTTCTGGCCCGGCTTGGGCGGCGAGCCCTTTGGGCAGCCAACATGGCGTGGGCGCCTGTGCTCGTGCGACCCCGGTCGGGCAGGCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS GCA 72 bp GGGACACCTCCGTCAGTCGCGGGCTGCCCGGCTCCCTaGTTCTCTCGGCGGCGCCCATGTCCAGCTCCCGGA +
Preference number: 6 (lower is better)
Translates to: GTPPSVAGCPAP*FSRRRPCPAPG
Trigger: TCCGGGAGCTGGACATGGGCGCCGCCGAGAGAAGCAGGGAGCCGGGCAGCCCGCGACTGACGGAGGTGTCCC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS CCA 72 bp ACCGGGGTCGCACGAGCACAGGCGCCCACGCCATGTTaGCTGCCCAAAGGGCTCGCCGCCCAAGCCGGGCCA +
Preference number: 6 (lower is better)
Translates to: TGVARAQAPTPC*LPKGLAAQAGP
Trigger: TGGCCCGGCTTGGGCGGCGAGCCCTTTGGGCAGCCAACATGGCGTGGGCGCCTGTGCTCGTGCGACCCCGGT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS GCA 72 bp GGGTCGCACGAGCACAGGCGCCCACGCCATGTTGGCTaGCCAAAGGGCTCGCCGCCCAAGCCGGGCCAGAAG +
Preference number: 6 (lower is better)
Translates to: GSHEHRRPRHVG*PKGSPPKPGQK
Trigger: CTTCTGGCCCGGCTTGGGCGGCGAGCCCTTTGGGCAGCCAACATGGCGTGGGCGCCTGTGCTCGTGCGACCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS GCA 72 bp AGGTCCCCTGGACAGCCAGGTAATCTCCGTCCCGCCTaGCCGACCGGGGTCGCACGAGCACAGGCGCCCACG +
Preference number: 6 (lower is better)
Translates to: RSPGQPGNLRPA*PTGVARAQAPT
Trigger: CGTGGGCGCCTGTGCTCGTGCGACCCCGGTCGGGCAGGCGGGACGGAGATTACCTGGCTGTCCAGGGGACCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS GCA 72 bp TTCTACCCTCCGTCAGTCGCGGGCTGCCCGGCTCCCTaGTTCTCTCGGCGGCGCCCATGTCCAGCTCCCGGA +
Preference number: 6 (lower is better)
Translates to: FYPPSVAGCPAP*FSRRRPCPAPG
Trigger: TCCGGGAGCTGGACATGGGCGCCGCCGAGAGAAGCAGGGAGCCGGGCAGCCCGCGACTGACGGAGGGTAGAA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000389589.8
CDS CCA 72 bp AGGCTGAGTGCCGCGGGACAGGCGCGACATTGGTGCTaGCGTTGGCGTCACAGACCCAGGGCTGCGGCGTGC +
Preference number: 6 (lower is better)
Translates to: RLSAAGQARHWC*RWRHRPRAAAC
Trigger: GCACGCCGCAGCCCTGGGTCTGTGACGCCAACGCCAGCACCAATGTCGCGCCTGTCCCGCGGCACTCAGCCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
ENST00000490689.3
CDS CAA 72 bp GGCGTGCAGGCTGAGTGCCGCGGGACAGGCGCGACATaGGTGCTGGCGTTGGCGTCACAGACCCAGGGCTGC +
Preference number: 6 (lower is better)
Translates to: GVQAECRGTGAT*VLALASQTQGC
Trigger: GCAGCCCTGGGTCTGTGACGCCAACGCCAGCACCAATGTCGCGCCTGTCCCGCGGCACTCAGCCTGCACGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
ENST00000490689.3
CDS CCA 72 bp AGTGCCGCGGGACAGGCGCGACATTGGTGCTGGCGTTaGCGTCACAGACCCAGGGCTGCGGCGTGCTTTTTG +
Preference number: 6 (lower is better)
Translates to: SAAGQARHWCWR*RHRPRAAACFL
Trigger: CAAAAAGCACGCCGCAGCCCTGGGTCTGTGACGCCAACGCCAGCACCAATGTCGCGCCTGTCCCGCGGCACT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
ENST00000490689.3
CDS CAA 72 bp GAGTGCCGCGGGACAGGCGCGACATTGGTGCTGGCGTaGGCGTCACAGACCCAGGGCTGCGGCGTGCTTTTT +
Preference number: 6 (lower is better)
Translates to: ECRGTGATLVLA*ASQTQGCGVLF
Trigger: AAAAAGCACGCCGCAGCCCTGGGTCTGTGACGCCAACGCCAGCACCAATGTCGCGCCTGTCCCGCGGCACTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
ENST00000490689.3
CDS CAA 72 bp GCCGAAAGGTATCAGCGAGAGCAACAGACCCCGGTGTaGTGCCGCACAGGGAGCCGCATCCGCAGACGCCCC +
Preference number: 6 (lower is better)
Translates to: AERYQREQQTPV*CRTGSRIRRRP
Trigger: GGGGCGTCTGCGGATGCGGCTCCCTGTGCGGCACAACACCGGGGTCTGTTGCTCTCGCTGATACCTTTCGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CAA 90 bp GTGCAGGCTGAGTGCCGCGGGACAGGCGCGACATTGGTGCTGGCGTaGGCGTCACAGACCCAGGGCTGCGGCGTGCTTTTTGGCTTTCAG +
Preference number: 6 (lower is better)
Translates to: VQAECRGTGATLVLA*ASQTQGCGVLFGFQ
Trigger: CTGAAAGCCAAAAAGCACGCCGCAGCCCTGGGTCTGTGACGCCAACGCCAGCACCAATGTCGCGCCTGTCCCGCGGCACTCAGCCTGCAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
ENST00000490689.3
CDS GCA 72 bp AGGGAGGAGGAGGAGGAGAAGAGAAGGGGCGGGGGCTaGCGGAGGGAAATGGGAACTGATGCTTCCCTGCCG +
Preference number: 6 (lower is better)
Translates to: REEEEEKRRGGG*RREMGTDASLP
Trigger: CGGCAGGGAAGCATCAGTTCCCATTTCCCTCCGGCAGCCCCCGCCCCTTCTCTTCTCCTCCTCCTCCTCCCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000483851.7
CDS GCA 72 bp GAAAGGTATCAGCGAGAGCAACAGACCCCGGTGTTGTaGCGCACAGGGAGCCGCATCCGCAGACGCCCCTCG +
Preference number: 6 (lower is better)
Translates to: ERYQREQQTPVL*RTGSRIRRRPS
Trigger: CGAGGGGCGTCTGCGGATGCGGCTCCCTGTGCGGCACAACACCGGGGTCTGTTGCTCTCGCTGATACCTTTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CAA 90 bp AACAATTGGGCCGAAAGGTATCAGCGAGAGCAACAGACCCCGGTGTaGTGCCGCACAGGGAGCCGCATCCGCAGACGCCCCTCGCTGCCC +
Preference number: 6 (lower is better)
Translates to: NNWAERYQREQQTPV*CRTGSRIRRRPSLP
Trigger: GGGCAGCGAGGGGCGTCTGCGGATGCGGCTCCCTGTGCGGCACAACACCGGGGTCTGTTGCTCTCGCTGATACCTTTCGGCCCAATTGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CCA 72 bp GGGCCAGAAGGCAGGAGGCGGAAAACCAGCCTCCGGTaGCGGGCGAAAGCAACCGCTCTTTCTGTTCTCTCT +
Preference number: 6 (lower is better)
Translates to: GPEGRRRKTSLR*RAKATALSVLS
Trigger: AGAGAGAACAGAAAGAGCGGTTGCTTTCGCCCGCCACCGGAGGCTGGTTTTCCGCCTCCTGCCTTCTGGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CCA 72 bp AACCGAAACGCCTCGCCCGGGAGAAGCAGCGTAGCCTaGACCTCAGCTTTCGTTGGCTTCCTTCTACCCTCC +
Preference number: 6 (lower is better)
Translates to: NRNASPGRSSVA*TSAFVGFLLPS
Trigger: GGAGGGTAGAAGGAAGCCAACGAAAGCTGAGGTCCAGGCTACGCTGCTTCTCCCGGGCGAGGCGTTTCGGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000389589.8
CDS CCA 72 bp GCAAAGGTCAAGTCTGAGCGGCCGCCTGGGGCAAGGTaGGCAGTCATCCACCACCTCCTTCACAAACGTACC +
Preference number: 6 (lower is better)
Translates to: AKVKSERPPGAR*AVIHHLLHKRT
Trigger: GGTACGTTTGTGAAGGAGGTGGTGGATGACTGCCCACCTTGCCCCAGGCGGCCGCTCAGACTTGACCTTTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CCA 72 bp AACCGAAACGCCTCGCCCGGGAGAAGCAGCGTAGCCTaGACCTCAGCTTTCGTTGGCTTCCTTCCTCCGTCA +
Preference number: 6 (lower is better)
Translates to: NRNASPGRSSVA*TSAFVGFLPPS
Trigger: TGACGGAGGAAGGAAGCCAACGAAAGCTGAGGTCCAGGCTACGCTGCTTCTCCCGGGCGAGGCGTTTCGGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000554685.2
CDS CAA 72 bp GTCTGGCCTTCGTCCTCCATCCCTTTCGCATCCTCTTaGCGATCTTTCAGCTCCGGGGACACTGGAGGGGGC +
Preference number: 6 (lower is better)
Translates to: VWPSSSIPFASS*RSFSSGDTGGG
Trigger: GCCCCCTCCAGTGTCCCCGGAGCTGAAAGATCGCAAAGAGGATGCGAAAGGGATGGAGGACGAAGGCCAGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS TCA 72 bp AGGAAGAATATCCCGGAGAAGCGCAAAGGTCAAGTCTaGGCGGCCGCCTGGGGCAAGGTGGGCAGTCATCCA +
Preference number: 6 (lower is better)
Translates to: RKNIPEKRKGQV*AAAWGKVGSHP
Trigger: TGGATGACTGCCCACCTTGCCCCAGGCGGCCGCTCAGACTTGACCTTTGCGCTTCTCCGGGATATTCTTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS GCA 72 bp TCTGGCCTTCGTCCTCCATCCCTTTCGCATCCTCTTTaGGATCTTTCAGCTCCGGGGACACTGGAGGGGGCA +
Preference number: 6 (lower is better)
Translates to: SGLRPPSLSHPL*DLSAPGTLEGA
Trigger: TGCCCCCTCCAGTGTCCCCGGAGCTGAAAGATCGCAAAGAGGATGCGAAAGGGATGGAGGACGAAGGCCAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CAA 90 bp TTGATTTTGGTCTGGCCTTCGTCCTCCATCCCTTTCGCATCCTCTTaGCGATCTTTCAGCTCCGGGGACACCTCCGTCAGTCGCGGGCTG +
Preference number: 6 (lower is better)
Translates to: LILVWPSSSIPFASS*RSFSSGDTSVSRGL
Trigger: CAGCCCGCGACTGACGGAGGTGTCCCCGGAGCTGAAAGATCGCAAAGAGGATGCGAAAGGGATGGAGGACGAAGGCCAGACCAAAATCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS GCA 72 bp TCTGGCCTTCGTCCTCCATCCCTTTCGCATCCTCTTTaGGATCTTTCAGCTCCGGGGACACCTCCGTCAGTC +
Preference number: 6 (lower is better)
Translates to: SGLRPPSLSHPL*DLSAPGTPPSV
Trigger: GACTGACGGAGGTGTCCCCGGAGCTGAAAGATCGCAAAGAGGATGCGAAAGGGATGGAGGACGAAGGCCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS CAA 72 bp GTCTGGCCTTCGTCCTCCATCCCTTTCGCATCCTCTTaGCGATCTTTCAGCTCCGGGGACACCTCCGTCAGT +
Preference number: 6 (lower is better)
Translates to: VWPSSSIPFASS*RSFSSGDTSVS
Trigger: ACTGACGGAGGTGTCCCCGGAGCTGAAAGATCGCAAAGAGGATGCGAAAGGGATGGAGGACGAAGGCCAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000441443.6
ENST00000483851.7
CDS CAA 72 bp GTCTGGCCTTCGTCCTCCATCCCTTTCGCATCCTCTTaGCGATCTTTCAGCTCCGGGGACACAAGAAACCGA +
Preference number: 6 (lower is better)
Translates to: VWPSSSIPFASS*RSFSSGDTRNR
Trigger: TCGGTTTCTTGTGTCCCCGGAGCTGAAAGATCGCAAAGAGGATGCGAAAGGGATGGAGGACGAAGGCCAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389589.8
ENST00000554685.2
CDS CAA 90 bp TTCCCCAGCAAACACCAAATGGTTTCCACTCACTTTCGCACTCACTaGCTCCGCAGCACTCACAGAAATCAAAGGCGCAGCGCCAGGCCT +
Preference number: 6 (lower is better)
Translates to: FPSKHQMVSTHFRTH*LRSTHRNQRRSARP
Trigger: AGGCCTGGCGCTGCGCCTTTGATTTCTGTGAGTGCTGCGGAGCAAGTGAGTGCGAAAGTGAGTGGAAACCATTTGGTGTTTGCTGGGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS GCA 72 bp TCTGGCCTTCGTCCTCCATCCCTTTCGCATCCTCTTTaGGATCTTTCAGCTCCGGGGACACAAGAAACCGAA +
Preference number: 6 (lower is better)
Translates to: SGLRPPSLSHPL*DLSAPGTQETE
Trigger: TTCGGTTTCTTGTGTCCCCGGAGCTGAAAGATCGCAAAGAGGATGCGAAAGGGATGGAGGACGAAGGCCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389589.8
ENST00000554685.2
CDS GCA 72 bp TCGTTCTCAGGCCAGCTCTCACCACCGCTGGCTCTCTaGCTACCGCAAACTTGCTGGTCTAATTTAGGAACA +
Preference number: 6 (lower is better)
Translates to: SFSGQLSPPLAL*LPQTCWSNLGT
Trigger: TGTTCCTAAATTAGACCAGCAAGTTTGCGGTAGGCAGAGAGCCAGCGGTGGTGAGAGCTGGCCTGAGAACGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CAA 72 bp AGGGTGAAATTGGTCCGACTTCGCCTCTGCTTGATTTaGGTCTGGCCTTCGTCCTCCATCCCTTTCGCATCC +
Preference number: 6 (lower is better)
Translates to: RVKLVRLRLCLI*VWPSSSIPFAS
Trigger: GGATGCGAAAGGGATGGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGACCAATTTCACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
ENST00000490689.3
ENST00000554685.2
CDS CAA 90 bp TTGATTTTGGTCTGGCCTTCGTCCTCCATCCCTTTCGCATCCTCTTaGCGATCTTTCAGCTCCGGGGACACAAGAAACCGAAACGCCTCG +
Preference number: 6 (lower is better)
Translates to: LILVWPSSSIPFASS*RSFSSGDTRNRNAS
Trigger: CGAGGCGTTTCGGTTTCTTGTGTCCCCGGAGCTGAAAGATCGCAAAGAGGATGCGAAAGGGATGGAGGACGAAGGCCAGACCAAAATCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000389589.8
ENST00000554685.2
CDS GCA 72 bp AGTTGTTCCAGGGTGAAATTGGTCCGACTTCGCCTCTaGTTGATTTTGGTCTGGCCTTCGTCCTCCATCCCT +
Preference number: 6 (lower is better)
Translates to: SCSRVKLVRLRL*LILVWPSSSIP
Trigger: AGGGATGGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGACCAATTTCACCCTGGAACAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
ENST00000490689.3
ENST00000554685.2
CDS GCA 72 bp CTCTCACCACCGCTGGCTCTCTGCCTACCGCAAACTTaGTGGTCTAATTTAGGAACAATTGGGCCGAAAGGT +
Preference number: 6 (lower is better)
Translates to: LSPPLALCLPQT*WSNLGTIGPKG
Trigger: ACCTTTCGGCCCAATTGTTCCTAAATTAGACCAGCAAGTTTGCGGTAGGCAGAGAGCCAGCGGTGGTGAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CAA 72 bp TGTTCCAGGGTGAAATTGGTCCGACTTCGCCTCTGCTaGATTTTGGTCTGGCCTTCGTCCTCCATCCCTTTC +
Preference number: 6 (lower is better)
Translates to: CSRVKLVRLRLC*ILVWPSSSIPF
Trigger: GAAAGGGATGGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGACCAATTTCACCCTGGAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
ENST00000490689.3
ENST00000554685.2
CDS CAA 90 bp AGTTGTTCCAGGGTGAAATTGGTCCGACTTCGCCTCTGCTTGATTTaGGTCTGGCCTTCGTCCTCCATCCCTTTCGCATCCTCTTTGCGA +
Preference number: 6 (lower is better)
Translates to: SCSRVKLVRLRLCLI*VWPSSSIPFASSLR
Trigger: TCGCAAAGAGGATGCGAAAGGGATGGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGACCAATTTCACCCTGGAACAACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
ENST00000490689.3
ENST00000554685.2
CDS CAA 90 bp TCATTGAGTTGTTCCAGGGTGAAATTGGTCCGACTTCGCCTCTGCTaGATTTTGGTCTGGCCTTCGTCCTCCATCCCTTTCGCATCCTCT +
Preference number: 6 (lower is better)
Translates to: SLSCSRVKLVRLRLC*ILVWPSSSIPFASS
Trigger: AGAGGATGCGAAAGGGATGGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGACCAATTTCACCCTGGAACAACTCAATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
ENST00000490689.3
ENST00000554685.2
CDS CAA 90 bp TCGTCAAAAAGCCTCTCCAGCTCATTGAGTTGTTCCAGGGTGAAATaGGTCCGACTTCGCCTCTGCTTGATTTTGGTCTGGCCTTCGTCC +
Preference number: 6 (lower is better)
Translates to: SSKSLSSSLSCSRVK*VRLRLCLILVWPSS
Trigger: GGACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGACCAATTTCACCCTGGAACAACTCAATGAGCTGGAGAGGCTTTTTGACGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
ENST00000490689.3
ENST00000554685.2
CDS GCA 72 bp GCTGCGCCTGAACCTGAAAGGACAAGGGCGTCACGTTaGAATGACTATCCTGCTGAAATGGCATCCTTAAAG +
Preference number: 6 (lower is better)
Translates to: AAPEPERTRASR*NDYPAEMASLK
Trigger: CTTTAAGGATGCCATTTCAGCAGGATAGTCATTGCAACGTGACGCCCTTGTCCTTTCAGGTTCAGGCGCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389589.8
ENST00000441443.6
CDS GCA 72 bp AACACCAAATGGTTTCCACTCACTTTCGCACTCACTTaGTCCGCAGCACTCACAGAAATCAAAGGCGCAGCG +
Preference number: 6 (lower is better)
Translates to: NTKWFPLTFALT*SAALTEIKGAA
Trigger: CGCTGCGCCTTTGATTTCTGTGAGTGCTGCGGAGCAAGTGAGTGCGAAAGTGAGTGGAAACCATTTGGTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CCA 72 bp AAATTGGTCCGACTTCGCCTCTGCTTGATTTTGGTCTaGCCTTCGTCCTCCATCCCTTTCGCATCCTCTTTG +
Preference number: 6 (lower is better)
Translates to: KLVRLRLCLILV*PSSSIPFASSL
Trigger: CAAAGAGGATGCGAAAGGGATGGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGACCAATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
ENST00000490689.3
ENST00000554685.2
CDS CCA 72 bp CGGGAGAAGCAGCGTAGCCTGGACCTCAGCTTTCGTTaGCTTCCTTCTACCTTGAAAGAGAATGGGAAGTTT +
Preference number: 6 (lower is better)
Translates to: REKQRSLDLSFR*LPSTLKENGKF
Trigger: AAACTTCCCATTCTCTTTCAAGGTAGAAGGAAGCCAACGAAAGCTGAGGTCCAGGCTACGCTGCTTCTCCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CCA 72 bp TTTGCAGTTCTTCCCAGCGCAGGATCCAGGCCAGCATaGGTGTTAAAAATCATTTCCGGAAGAGCCGGTCAA +
Preference number: 6 (lower is better)
Translates to: FAVLPSAGSRPA*VLKIISGRAGQ
Trigger: TTGACCGGCTCTTCCGGAAATGATTTTTAACACCCATGCTGGCCTGGATCCTGCGCTGGGAAGAACTGCAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CCA 72 bp TCACCACCGCTGGCTCTCTGCCTACCGCAAACTTGCTaGTCTAATTTAGGAACAATTGGGCCGAAAGGTATC +
Preference number: 6 (lower is better)
Translates to: SPPLALCLPQTC*SNLGTIGPKGI
Trigger: GATACCTTTCGGCCCAATTGTTCCTAAATTAGACCAGCAAGTTTGCGGTAGGCAGAGAGCCAGCGGTGGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CAA 72 bp AGCCTCTCCAGCTCATTGAGTTGTTCCAGGGTGAAATaGGTCCGACTTCGCCTCTGCTTGATTTTGGTCTGG +
Preference number: 6 (lower is better)
Translates to: SLSSSLSCSRVK*VRLRLCLILVW
Trigger: CCAGACCAAAATCAAGCAGAGGCGAAGTCGGACCAATTTCACCCTGGAACAACTCAATGAGCTGGAGAGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000389589.8
ENST00000425436.7
ENST00000441443.6
ENST00000483851.7
ENST00000490689.3
ENST00000554685.2
CDS CAA 90 bp CAGCTTTCGTTGGCTTCCTTCTACCTTGAAAGAGAATGGGAAGTTTaGGCCCCTAAGATCCAAAGATTCAGGGGCTCTGCGGAGTTCGAG +
Preference number: 6 (lower is better)
Translates to: QLSLASFYLEREWEV*APKIQRFRGSAEFE
Trigger: CTCGAACTCCGCAGAGCCCCTGAATCTTTGGATCTTAGGGGCCAAAACTTCCCATTCTCTTTCAAGGTAGAAGGAAGCCAACGAAAGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CCA 72 bp AAAAAGAATAGAGAATCCTTCCCCCTCGTGGAATCCTaGTCCGGCTTCTCAACCCACCCGGAGGAAGAATAT +
Preference number: 6 (lower is better)
Translates to: KKNRESFPLVES*SGFSTHPEEEY
Trigger: ATATTCTTCCTCCGGGTGGGTTGAGAAGCCGGACCAGGATTCCACGAGGGGGAAGGATTCTCTATTCTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CAA 72 bp AAGAAGTCAAAGCTGAGTTTAGATAGTCGAGGCTGTTaGCAGTTCTTCCCAGCGCAGGATCCAGGCCAGCAT +
Preference number: 6 (lower is better)
Translates to: KKSKLSLDSRGC*QFFPAQDPGQH
Trigger: ATGCTGGCCTGGATCCTGCGCTGGGAAGAACTGCAAACAGCCTCGACTATCTAAACTCAGCTTTGACTTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CAA 72 bp AAACACCAAATGGTTTCCACTCACTTTCGCACTCACTaGCTCCGCAGCACTCACAGAAATCAAAGGCGCAGC +
Preference number: 6 (lower is better)
Translates to: KHQMVSTHFRTH*LRSTHRNQRRS
Trigger: GCTGCGCCTTTGATTTCTGTGAGTGCTGCGGAGCAAGTGAGTGCGAAAGTGAGTGGAAACCATTTGGTGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS GCA 72 bp CAAGCGGAATATTCGCGATCCTCGGTTTCTATTGGTTaGTCAAAGCCTTTTCATGCAACCAGCAGCTCGGAT +
Preference number: 6 (lower is better)
Translates to: QAEYSRSSVSIG*SKPFHATSSSD
Trigger: ATCCGAGCTGCTGGTTGCATGAAAAGGCTTTGAGCAACCAATAGAAACCGAGGATCGCGAATATTCCGCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CCA 72 bp GGTTCAAGCGGAATATTCGCGATCCTCGGTTTCTATTaGTTGCTCAAAGCCTTTTCATGCAACCAGCAGCTC +
Preference number: 6 (lower is better)
Translates to: GSSGIFAILGFY*LLKAFSCNQQL
Trigger: GAGCTGCTGGTTGCATGAAAAGGCTTTGAGCAACCAATAGAAACCGAGGATCGCGAATATTCCGCTTGAACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CAA 72 bp TCAAGCGGAATATTCGCGATCCTCGGTTTCTATTGGTaGCTCAAAGCCTTTTCATGCAACCAGCAGCTCGGA +
Preference number: 6 (lower is better)
Translates to: SSGIFAILGFYW*LKAFSCNQQLG
Trigger: TCCGAGCTGCTGGTTGCATGAAAAGGCTTTGAGCAACCAATAGAAACCGAGGATCGCGAATATTCCGCTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CAA 90 bp AAGCAGCGTAGCCTGGACCTCAGCTTTCGTTGGCTTCCTTCTACCTaGAAAGAGAATGGGAAGTTTTGGCCCCTAAGATCCAAAGATTCA +
Preference number: 6 (lower is better)
Translates to: KQRSLDLSFRWLPST*KENGKFWPLRSKDS
Trigger: TGAATCTTTGGATCTTAGGGGCCAAAACTTCCCATTCTCTTTCAAGGTAGAAGGAAGCCAACGAAAGCTGAGGTCCAGGCTACGCTGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CAA 90 bp GAGATCAACAGGTTCAAGCGGAATATTCGCGATCCTCGGTTTCTATaGGTTGCTCAAAGCCTTTTCATGCAACCAGCAGCTCGGATGTTT +
Preference number: 6 (lower is better)
Translates to: EINRFKRNIRDPRFL*VAQSLFMQPAARMF
Trigger: AAACATCCGAGCTGCTGGTTGCATGAAAAGGCTTTGAGCAACCAATAGAAACCGAGGATCGCGAATATTCCGCTTGAACCTGTTGATCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS TCA 72 bp GAACCTGCTGAAATGGCATCCTTAAAGCACCTACGTTaGCATAAGGTGCGACTCTACAAGCTTCAAACTGGC +
Preference number: 6 (lower is better)
Translates to: EPAEMASLKHLR*HKVRLYKLQTG
Trigger: GCCAGTTTGAAGCTTGTAGAGTCGCACCTTATGTCAACGTAGGTGCTTTAAGGATGCCATTTCAGCAGGTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000425436.7
ENST00000483851.7
CDS TCA 72 bp TTGCCTGCTGAAATGGCATCCTTAAAGCACCTACGTTaGCATAAGGTGCGACTCTACAAGCTTCAAACTGGC +
Preference number: 6 (lower is better)
Translates to: LPAEMASLKHLR*HKVRLYKLQTG
Trigger: GCCAGTTTGAAGCTTGTAGAGTCGCACCTTATGTCAACGTAGGTGCTTTAAGGATGCCATTTCAGCAGGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CAA 72 bp TCCCTGCCGGAGCGCGCTTGTTCAATGTTAAGATCTTaGACAATTCTTCCTGCGGAGAGTTCAGATCTGATA +
Preference number: 6 (lower is better)
Translates to: SLPERACSMLRS*TILPAESSDLI
Trigger: TATCAGATCTGAACTCTCCGCAGGAAGAATTGTCAAAGATCTTAACATTGAACAAGCGCGCTCCGGCAGGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000483851.7
CDS CAA 72 bp AGGTTCAAGCGGAATATTCGCGATCCTCGGTTTCTATaGGTTGCTCAAAGCCTTTTCATGCAACCAGCAGCT +
Preference number: 6 (lower is better)
Translates to: RFKRNIRDPRFL*VAQSLFMQPAA
Trigger: AGCTGCTGGTTGCATGAAAAGGCTTTGAGCAACCAATAGAAACCGAGGATCGCGAATATTCCGCTTGAACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS TCA 72 bp TATCCTGCTGAAATGGCATCCTTAAAGCACCTACGTTaGCATAAGGTGCGACTCTACAAGCTTCAAACTGGC +
Preference number: 6 (lower is better)
Translates to: YPAEMASLKHLR*HKVRLYKLQTG
Trigger: GCCAGTTTGAAGCTTGTAGAGTCGCACCTTATGTCAACGTAGGTGCTTTAAGGATGCCATTTCAGCAGGATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389589.8
ENST00000441443.6
CDS CCA 72 bp CAGCTTTCGTTGGCTTCCTTCTACCTTGAAAGAGAATaGGAAGTTTTGGCCCCTAAGATCCAAAGATTCAGG +
Preference number: 6 (lower is better)
Translates to: QLSLASFYLERE*EVLAPKIQRFR
Trigger: CCTGAATCTTTGGATCTTAGGGGCCAAAACTTCCCATTCTCTTTCAAGGTAGAAGGAAGCCAACGAAAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS CAA 90 bp TCAACAGGTTCAAGCGGAATATTCGCGATCCTCGGTTTCTATTGGTaGCTCAAAGCCTTTTCATGCAACCAGCAGCTCGGATGTTTAATA +
Preference number: 6 (lower is better)
Translates to: STGSSGIFAILGFYW*LKAFSCNQQLGCLI
Trigger: TATTAAACATCCGAGCTGCTGGTTGCATGAAAAGGCTTTGAGCAACCAATAGAAACCGAGGATCGCGAATATTCCGCTTGAACCTGTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS TCA 72 bp CTTCTCCTCCCTTTAAAAACAGGAGCTCTTCTAGTGTaGGCATATACAGCCACCATATATATATCCCCCTGG +
Preference number: 6 (lower is better)
Translates to: LLLPLKTGALLV*AYTATIYISPW
Trigger: CCAGGGGGATATATATATGGTGGCTGTATATGCTCACACTAGAAGAGCTCCTGTTTTTAAAGGGAGGAGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000490689.3
CDS GCA 72 bp ATCCTCGGTTTCTATTGGTTGCTCAAAGCCTTTTCATaGAACCAGCAGCTCGGATGTTTAATAAAATATGAA +
Preference number: 6 (lower is better)
Translates to: ILGFYWLLKAFS*NQQLGCLIKYE
Trigger: TTCATATTTTATTAAACATCCGAGCTGCTGGTTGCATGAAAAGGCTTTGAGCAACCAATAGAAACCGAGGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000490689.3