Pregenerated sensors for SHOX (Homo sapiens)
Ensembl gene IDs: ENSG00000185960Ensembl transcript IDs: ENST00000334060.8, ENST00000381575.6
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GAGGTGGAGGTGAGAGGATCTTTGGAGCTCAGGAGCTCAAGACCAGCCTCAGCAGGCTGCAGTGAGCTATaGTCGCACCAGTGTGCTCCA | + |
|
Preference number: 2 (lower is better) Translates to: EVEVRGSLELRSSRPASAGCSEL*SHQCAP Trigger: TGGAGCACACTGGTGCGATCATAGCTCACTGCAGCC...TGCTGAGGCTGGTCTTGAGCTCCTGAGCTCCAAAGATCCTCTCACCTCCACCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| 3UTR-3UTR TCA 90 bp | AACACTTTGGGAGGTGGAGGTGAGAGGATCTTTGGAGCTCAGGAGCTCAAGACCGGCAGGAGAATCGCTTaGACTCGGGAGGCGGAGGTT | + |
|
Preference number: 2 (lower is better) Translates to: NTLGGGGERIFGAQELKTGRRIA*TREAEV Trigger: AACCTCCGCCTCCCGAGTTCAAGCGATTCTCCTGCC...GGTCTTGAGCTCCTGAGCTCCAAAGATCCTCTCACCTCCACCTCCCAAAGTGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| 3UTR-3UTR TCA 90 bp | GAGGTGGAGGTGAGAGGATCTTTGGAGCTCAGGAGCTCAAGACCAGCCTCAGCAATACAAACATTATCTTaGCATGGTGGTGGGCACCTG | + |
|
Preference number: 2 (lower is better) Translates to: EVEVRGSLELRSSRPASAIQTLS*HGGGHL Trigger: CAGGTGCCCACCACCATGTCAAGATAATGTTTGTAT...TGCTGAGGCTGGTCTTGAGCTCCTGAGCTCCAAAGATCCTCTCACCTCCACCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| 3UTR-3UTR CCA 90 bp | AACACTTTGGGAGGTGGAGGTGAGAGGATCTTTGGAGCTCAGGAGCTCAAGACCATCTTGACATGGTGGTaGGCACCTGTAATCCCAGCT | + |
|
Preference number: 2 (lower is better) Translates to: NTLGGGGERIFGAQELKTILTWW*APVIPA Trigger: AGCTGGGATTACAGGTGCCCACCACCATGTCAAGAT...GGTCTTGAGCTCCTGAGCTCCAAAGATCCTCTCACCTCCACCTCCCAAAGTGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| 3UTR-3UTR CCA 90 bp | GAGGTGGAGGTGAGAGGATCTTTGGAGCTCAGGAGCTCAAGACCAGCCTCAGCAATTATCTTGACATGGTaGTGGGCACCTGTAATCCCA | + |
|
Preference number: 2 (lower is better) Translates to: EVEVRGSLELRSSRPASAIILTW*WAPVIP Trigger: TGGGATTACAGGTGCCCACCACCATGTCAAGATAAT...TGCTGAGGCTGGTCTTGAGCTCCTGAGCTCCAAAGATCCTCTCACCTCCACCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| 3UTR-3UTR CCA 90 bp | GAGGTGGAGGTGAGAGGATCTTTGGAGCTCAGGAGCTCAAGACCAGCCTCAGCAAACATTATCTTGACATaGTGGTGGGCACCTGTAATC | + |
|
Preference number: 2 (lower is better) Translates to: EVEVRGSLELRSSRPASANIILT*WWAPVI Trigger: GATTACAGGTGCCCACCACCATGTCAAGATAATGTT...TGCTGAGGCTGGTCTTGAGCTCCTGAGCTCCAAAGATCCTCTCACCTCCACCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| 3UTR-3UTR TCA 90 bp | AACACTTTGGGAGGTGGAGGTGAGAGGATCTTTGGAGCTCAGGAGCTCAAGACCATACAAACATTATCTTaGCATGGTGGTGGGCACCTG | + |
|
Preference number: 2 (lower is better) Translates to: NTLGGGGERIFGAQELKTIQTLS*HGGGHL Trigger: CAGGTGCCCACCACCATGTCAAGATAATGTTTGTAT...GGTCTTGAGCTCCTGAGCTCCAAAGATCCTCTCACCTCCACCTCCCAAAGTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| 3UTR-3UTR CCA 90 bp | GTTCATGCTTGTAATTCTAACACTTTGGGAGGTGGAGGTGAGAGGATCTTTGGAATTATCTTGACATGGTaGTGGGCACCTGTAATCCCA | + |
|
Preference number: 2 (lower is better) Translates to: VHACNSNTLGGGGERIFGIILTW*WAPVIP Trigger: TGGGATTACAGGTGCCCACCACCATGTCAAGATAAT...TCCAAAGATCCTCTCACCTCCACCTCCCAAAGTGTTAGAATTACAAGCATGAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR CCA 90 bp | GAGGTGGAGGTGAGAGGATCTTTGGAGCTCAGGAGCTCAAGACCAGCCTCAGCAAGCAGCCGGGGCTGGTaGATGCGCGCGTCTCCCCGC | + |
|
Preference number: 4 (lower is better) Translates to: EVEVRGSLELRSSRPASASSRGW*MRASPR Trigger: GCGGGGAGACGCGCGCATCCACCAGCCCCGGCTGCT...TGCTGAGGCTGGTCTTGAGCTCCTGAGCTCCAAAGATCCTCTCACCTCCACCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR TCA 90 bp | GAGGTGGAGGTGAGAGGATCTTTGGAGCTCAGGAGCTCAAGACCAGCCTCAGCAGGCAGGAGAATCGCTTaGACTCGGGAGGCGGAGGTT | + |
|
Preference number: 4 (lower is better) Translates to: EVEVRGSLELRSSRPASAGRRIA*TREAEV Trigger: AACCTCCGCCTCCCGAGTTCAAGCGATTCTCCTGCC...TGCTGAGGCTGGTCTTGAGCTCCTGAGCTCCAAAGATCCTCTCACCTCCACCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR GCA 90 bp | AACACTTTGGGAGGTGGAGGTGAGAGGATCTTTGGAGCTCAGGAGCTCAAGACCTTCTGGAACCAAACCTaGACGCGCGCCTCGGAGAGC | + |
|
Preference number: 4 (lower is better) Translates to: NTLGGGGERIFGAQELKTFWNQT*TRASES Trigger: GCTCTCCGAGGCGCGCGTGCAGGTTTGGTTCCAGAA...GGTCTTGAGCTCCTGAGCTCCAAAGATCCTCTCACCTCCACCTCCCAAAGTGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR TCA 90 bp | GAGGTGGAGGTGAGAGGATCTTTGGAGCTCAGGAGCTCAAGACCAGCCTCAGCATTTGGGAGGTGGAGGTaGGAGGATCTTTGGAGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: EVEVRGSLELRSSRPASAFGRWR*EDLWSS Trigger: TGAGCTCCAAAGATCCTCTCACCTCCACCTCCCAAA...TGCTGAGGCTGGTCTTGAGCTCCTGAGCTCCAAAGATCCTCTCACCTCCACCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR CCA 90 bp | ACTGAAAATACAAACATTATCTTGACATGGTGGTGGGCACCTGTAATCCCAGCTAGCAGCCGGGGCTGGTaGATGCGCGCGTCTCCCCGC | + |
|
Preference number: 4 (lower is better) Translates to: TENTNIILTWWWAPVIPASSRGW*MRASPR Trigger: GCGGGGAGACGCGCGCATCCACCAGCCCCGGCTGCT...AGCTGGGATTACAGGTGCCCACCACCATGTCAAGATAATGTTTGTATTTTCAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR CCA 90 bp | GAGGTGGAGGTGAGAGGATCTTTGGAGCTCAGGAGCTCAAGACCAGCCTCAGCAGGAGACCACGGGCAGTaGTTCATGCTTGTAATTCTA | + |
|
Preference number: 4 (lower is better) Translates to: EVEVRGSLELRSSRPASAGDHGQ*FMLVIL Trigger: TAGAATTACAAGCATGAACCACTGCCCGTGGTCTCC...TGCTGAGGCTGGTCTTGAGCTCCTGAGCTCCAAAGATCCTCTCACCTCCACCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR GCA 90 bp | AATACAAACATTATCTTGACATGGTGGTGGGCACCTGTAATCCCAGCTACTCGGTTCTGGAACCAAACCTaGACGCGCGCCTCGGAGAGC | + |
|
Preference number: 4 (lower is better) Translates to: NTNIILTWWWAPVIPATRFWNQT*TRASES Trigger: GCTCTCCGAGGCGCGCGTGCAGGTTTGGTTCCAGAA...CCGAGTAGCTGGGATTACAGGTGCCCACCACCATGTCAAGATAATGTTTGTATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR TCA 90 bp | GTTCATGCTTGTAATTCTAACACTTTGGGAGGTGGAGGTGAGAGGATCTTTGGAGGCAGGAGAATCGCTTaGACTCGGGAGGCGGAGGTT | + |
|
Preference number: 4 (lower is better) Translates to: VHACNSNTLGGGGERIFGGRRIA*TREAEV Trigger: AACCTCCGCCTCCCGAGTTCAAGCGATTCTCCTGCC...TCCAAAGATCCTCTCACCTCCACCTCCCAAAGTGTTAGAATTACAAGCATGAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR TCA 90 bp | AATACAAACATTATCTTGACATGGTGGTGGGCACCTGTAATCCCAGCTACTCGGGGCTGCAGTGAGCTATaGTCGCACCAGTGTGCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: NTNIILTWWWAPVIPATRGCSEL*SHQCAP Trigger: TGGAGCACACTGGTGCGATCATAGCTCACTGCAGCC...CCGAGTAGCTGGGATTACAGGTGCCCACCACCATGTCAAGATAATGTTTGTATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR CCA 90 bp | AACACTTTGGGAGGTGGAGGTGAGAGGATCTTTGGAGCTCAGGAGCTCAAGACCGTAATTCTAACACTTTaGGAGGTGGAGGTGAGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: NTLGGGGERIFGAQELKTVILTL*EVEVRG Trigger: TCCTCTCACCTCCACCTCCCAAAGTGTTAGAATTAC...GGTCTTGAGCTCCTGAGCTCCAAAGATCCTCTCACCTCCACCTCCCAAAGTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR GCA 90 bp | AATACAAACATTATCTTGACATGGTGGTGGGCACCTGTAATCCCAGCTACTCGGTTCATAAATCCCTTCTaGCACTCTCGCGGTGCCGAA | + |
|
Preference number: 4 (lower is better) Translates to: NTNIILTWWWAPVIPATRFINPF*HSRGAE Trigger: TTCGGCACCGCGAGAGTGGCAGAAGGGATTTATGAA...CCGAGTAGCTGGGATTACAGGTGCCCACCACCATGTCAAGATAATGTTTGTATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR TCA 90 bp | ACTGAAAATACAAACATTATCTTGACATGGTGGTGGGCACCTGTAATCCCAGCTTTTGGGAGGTGGAGGTaGGAGGATCTTTGGAGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: TENTNIILTWWWAPVIPAFGRWR*EDLWSS Trigger: TGAGCTCCAAAGATCCTCTCACCTCCACCTCCCAAA...AGCTGGGATTACAGGTGCCCACCACCATGTCAAGATAATGTTTGTATTTTCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR CCA 90 bp | AATACAAACATTATCTTGACATGGTGGTGGGCACCTGTAATCCCAGCTACTCGGGGAGACCACGGGCAGTaGTTCATGCTTGTAATTCTA | + |
|
Preference number: 4 (lower is better) Translates to: NTNIILTWWWAPVIPATRGDHGQ*FMLVIL Trigger: TAGAATTACAAGCATGAACCACTGCCCGTGGTCTCC...CCGAGTAGCTGGGATTACAGGTGCCCACCACCATGTCAAGATAATGTTTGTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR CCA 90 bp | AATACAAACATTATCTTGACATGGTGGTGGGCACCTGTAATCCCAGCTACTCGGCAAAACTCCATCTGTTaGAAAGGCATCCGTAAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: NTNIILTWWWAPVIPATRQNSIC*KGIRKA Trigger: AGCCTTACGGATGCCTTTCCAACAGATGGAGTTTTG...CCGAGTAGCTGGGATTACAGGTGCCCACCACCATGTCAAGATAATGTTTGTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR CCA 90 bp | ACTGAAAATACAAACATTATCTTGACATGGTGGTGGGCACCTGTAATCCCAGCTATCTTGACATGGTGGTaGGCACCTGTAATCCCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: TENTNIILTWWWAPVIPAILTWW*APVIPA Trigger: AGCTGGGATTACAGGTGCCCACCACCATGTCAAGAT...AGCTGGGATTACAGGTGCCCACCACCATGTCAAGATAATGTTTGTATTTTCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR CCA 90 bp | AATACAAACATTATCTTGACATGGTGGTGGGCACCTGTAATCCCAGCTACTCGGATTATCTTGACATGGTaGTGGGCACCTGTAATCCCA | + |
|
Preference number: 4 (lower is better) Translates to: NTNIILTWWWAPVIPATRIILTW*WAPVIP Trigger: TGGGATTACAGGTGCCCACCACCATGTCAAGATAAT...CCGAGTAGCTGGGATTACAGGTGCCCACCACCATGTCAAGATAATGTTTGTATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR CCA 90 bp | AATACAAACATTATCTTGACATGGTGGTGGGCACCTGTAATCCCAGCTACTCGGGTAATTCTAACACTTTaGGAGGTGGAGGTGAGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: NTNIILTWWWAPVIPATRVILTL*EVEVRG Trigger: TCCTCTCACCTCCACCTCCCAAAGTGTTAGAATTAC...CCGAGTAGCTGGGATTACAGGTGCCCACCACCATGTCAAGATAATGTTTGTATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR TCA 90 bp | GTTCATGCTTGTAATTCTAACACTTTGGGAGGTGGAGGTGAGAGGATCTTTGGAATACAAACATTATCTTaGCATGGTGGTGGGCACCTG | + |
|
Preference number: 4 (lower is better) Translates to: VHACNSNTLGGGGERIFGIQTLS*HGGGHL Trigger: CAGGTGCCCACCACCATGTCAAGATAATGTTTGTAT...TCCAAAGATCCTCTCACCTCCACCTCCCAAAGTGTTAGAATTACAAGCATGAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR CCA 90 bp | GTTCATGCTTGTAATTCTAACACTTTGGGAGGTGGAGGTGAGAGGATCTTTGGACAAAACTCCATCTGTTaGAAAGGCATCCGTAAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: VHACNSNTLGGGGERIFGQNSIC*KGIRKA Trigger: AGCCTTACGGATGCCTTTCCAACAGATGGAGTTTTG...TCCAAAGATCCTCTCACCTCCACCTCCCAAAGTGTTAGAATTACAAGCATGAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR CCA 90 bp | AATACAAACATTATCTTGACATGGTGGTGGGCACCTGTAATCCCAGCTACTCGGAACATTATCTTGACATaGTGGTGGGCACCTGTAATC | + |
|
Preference number: 4 (lower is better) Translates to: NTNIILTWWWAPVIPATRNIILT*WWAPVI Trigger: GATTACAGGTGCCCACCACCATGTCAAGATAATGTT...CCGAGTAGCTGGGATTACAGGTGCCCACCACCATGTCAAGATAATGTTTGTATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR CCA 90 bp | GTTCATGCTTGTAATTCTAACACTTTGGGAGGTGGAGGTGAGAGGATCTTTGGAAACATTATCTTGACATaGTGGTGGGCACCTGTAATC | + |
|
Preference number: 4 (lower is better) Translates to: VHACNSNTLGGGGERIFGNIILT*WWAPVI Trigger: GATTACAGGTGCCCACCACCATGTCAAGATAATGTT...TCCAAAGATCCTCTCACCTCCACCTCCCAAAGTGTTAGAATTACAAGCATGAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR CAA 90 bp | AACACTTTGGGAGGTGGAGGTGAGAGGATCTTTGGAGCTCAGGAGCTCAAGACCTGTAATTCTAACACTTaGGGAGGTGGAGGTGAGAGG | + |
|
Preference number: 5 (lower is better) Translates to: NTLGGGGERIFGAQELKTCNSNT*GGGGER Trigger: CCTCTCACCTCCACCTCCCAAAGTGTTAGAATTACA...GGTCTTGAGCTCCTGAGCTCCAAAGATCCTCTCACCTCCACCTCCCAAAGTGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||
| CDS-3UTR CAA 90 bp | AATACAAACATTATCTTGACATGGTGGTGGGCACCTGTAATCCCAGCTACTCGGTGTAATTCTAACACTTaGGGAGGTGGAGGTGAGAGG | + |
|
Preference number: 5 (lower is better) Translates to: NTNIILTWWWAPVIPATRCNSNT*GGGGER Trigger: CCTCTCACCTCCACCTCCCAAAGTGTTAGAATTACA...CCGAGTAGCTGGGATTACAGGTGCCCACCACCATGTCAAGATAATGTTTGTATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000334060.8 ENST00000381575.6 |
||