Pregenerated sensors for SHLD3 (Homo sapiens)
Ensembl gene IDs: ENSG00000253251Ensembl transcript IDs: ENST00000510585.3
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | AAATCTAGACTAGTCTCCCACTTTGAACTACATTCATaGCACATAAATAGCACTCCAAAGAGAATTGTTTCG | + |
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Preference number: 3 (lower is better) Translates to: KSRLVSHFELHS*HINSTPKRIVS Trigger: CGAAACAATTCTCTTTGGAGTGCTATTTATGTGGCATGAATGTAGTTCAAAGTGGGAGACTAGTCTAGATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000510585.3 |
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| CDS TCA 90 bp | GTACTGTTTCACATCTTCAGCTGCCTCTTCAGAAATCACAGGTGGTaGTCTTTTAGGTCTGAGTGGAAGCTTGGACCCATCATATGGAAA | + |
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Preference number: 5 (lower is better) Translates to: VLFHIFSCLFRNHRW*SFRSEWKLGPIIWK Trigger: TTTCCATATGATGGGTCCAAGCTTCCACTCAGACCTAAAAGATCACCACCTGTGATTTCTGAAGAGGCAGCTGAAGATGTGAAACAGTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000510585.3 |
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| CDS TCA 90 bp | GGAAACCAAGGTATAAATCTTGATAGCGGACGAGTAGGAAAGTCTTaGATTGCTTTTTCTGCAATTTTTGGCAGTTGTGTGGGATCACTC | + |
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Preference number: 5 (lower is better) Translates to: GNQGINLDSGRVGKS*IAFSAIFGSCVGSL Trigger: GAGTGATCCCACACAACTGCCAAAAATTGCAGAAAAAGCAATTCAAGACTTTCCTACTCGTCCGCTATCAAGATTTATACCTTGGTTTCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000510585.3 |
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| CDS TCA 90 bp | AAGGGAAATACTCCAAGATCTCCTCTTGTGCTGTTTTCCCTTTTCTaGTTGTTTACCCAGATTTCCAGAATTAGTCTGTTCCTTCAGTGT | + |
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Preference number: 5 (lower is better) Translates to: KGNTPRSPLVLFSLF*LFTQISRISLFLQC Trigger: ACACTGAAGGAACAGACTAATTCTGGAAATCTGGGTAAACAATCAGAAAAGGGAAAACAGCACAAGAGGAGATCTTGGAGTATTTCCCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000510585.3 |
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| CDS GCA 90 bp | GTACAATTATTGCTGGGAAGGGAAATACTCCAAGATCTCCTCTTGTaGTGTTTTCCCTTTTCTGATTGTTTACCCAGATTTCCAGAATTA | + |
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Preference number: 5 (lower is better) Translates to: VQLLLGREILQDLLL*CFPFSDCLPRFPEL Trigger: TAATTCTGGAAATCTGGGTAAACAATCAGAAAAGGGAAAACAGCACAAGAGGAGATCTTGGAGTATTTCCCTTCCCAGCAATAATTGTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000510585.3 |
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| CDS CAA 90 bp | TCTTCAGAAATCACAGGTGGTGATCTTTTAGGTCTGAGTGGAAGCTaGGACCCATCATATGGAAACCAAGGTATAAATCTTGATAGCGGA | + |
|
Preference number: 6 (lower is better) Translates to: SSEITGGDLLGLSGS*DPSYGNQGINLDSG Trigger: TCCGCTATCAAGATTTATACCTTGGTTTCCATATGATGGGTCCAAGCTTCCACTCAGACCTAAAAGATCACCACCTGTGATTTCTGAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000510585.3 |
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| CDS CAA 72 bp | ATCACAGGTGGTGATCTTTTAGGTCTGAGTGGAAGCTaGGACCCATCATATGGAAACCAAGGTATAAATCTT | + |
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Preference number: 6 (lower is better) Translates to: ITGGDLLGLSGS*DPSYGNQGINL Trigger: AAGATTTATACCTTGGTTTCCATATGATGGGTCCAAGCTTCCACTCAGACCTAAAAGATCACCACCTGTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000510585.3 |
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| CDS CAA 90 bp | GTGCCTAATAATTTGATTGAGTTTTGTCCAAATGTCTTCCAGAGTTaGGCTGTTACAAATAGTGTGTTCTATTGTCCATCTTGCTCTATA | + |
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Preference number: 6 (lower is better) Translates to: VPNNLIEFCPNVFQS*AVTNSVFYCPSCSI Trigger: TATAGAGCAAGATGGACAATAGAACACACTATTTGTAACAGCCAAACTCTGGAAGACATTTGGACAAAACTCAATCAAATTATTAGGCAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000510585.3 |
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| CDS TCA 72 bp | GCATTACAAGATGGAAGTTCATTGTGCCTAATAATTTaGTTGAGTTTTGTCCAAATGTCTTCCAGAGTTTGG | + |
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Preference number: 6 (lower is better) Translates to: ALQDGSSLCLII*LSFVQMSSRVW Trigger: CCAAACTCTGGAAGACATTTGGACAAAACTCAATCAAATTATTAGGCACAATGAACTTCCATCTTGTAATGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000510585.3 |
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| CDS CCA 72 bp | CTTGAATTGCTTTTTCTGCAATTTTTGGCAGTTGTGTaGGATCACTCTCACATGGTCGATAATGTAATATTA | + |
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Preference number: 6 (lower is better) Translates to: LELLFLQFLAVV*DHSHMVDNVIL Trigger: TAATATTACATTATCGACCATGTGAGAGTGATCCCACACAACTGCCAAAAATTGCAGAAAAAGCAATTCAAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000510585.3 |
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