Pregenerated sensors for SHLD2 (Homo sapiens)
Ensembl gene IDs: ENSG00000122376Ensembl transcript IDs: ENST00000298784.5, ENST00000298786.5
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GTTTCTGAGGGAATGTCTTCTCTGTGGTTCCCCATACTTAGTACAATGCCTGGACCATACTTAGTACAATaGCTGGAATGTAGCAGGGAC | + |
|
Preference number: 4 (lower is better) Translates to: VSEGMSSLWFPILSTMPGPYLVQ*LECSRD Trigger: GTCCCTGCTACATTCCAGGCATTGTACTAAGTATGG...TCCAGGCATTGTACTAAGTATGGGGAACCACAGAGAAGACATTCCCTCAGAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000298784.5 ENST00000298786.5 |
||
| CDS-3UTR CCA 90 bp | CAGCAGTTTCTGAGGGAATGTCTTCTCTGTGGTTCCCCATACTTAGTACAATGCGGAATGTCTTCTCTGTaGTTCCCCATACTTAGTACA | + |
|
Preference number: 4 (lower is better) Translates to: QQFLRECLLCGSPYLVQCGMSSL*FPILST Trigger: TGTACTAAGTATGGGGAACCACAGAGAAGACATTCC...GCATTGTACTAAGTATGGGGAACCACAGAGAAGACATTCCCTCAGAAACTGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000298784.5 ENST00000298786.5 |
||
| CDS-3UTR CCA 90 bp | GTTTCTGAGGGAATGTCTTCTCTGTGGTTCCCCATACTTAGTACAATGCCTGGAGGAATGTCTTCTCTGTaGTTCCCCATACTTAGTACA | + |
|
Preference number: 4 (lower is better) Translates to: VSEGMSSLWFPILSTMPGGMSSL*FPILST Trigger: TGTACTAAGTATGGGGAACCACAGAGAAGACATTCC...TCCAGGCATTGTACTAAGTATGGGGAACCACAGAGAAGACATTCCCTCAGAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000298784.5 ENST00000298786.5 |
||
| CDS-3UTR TCA 90 bp | CAGCAGTTTCTGAGGGAATGTCTTCTCTGTGGTTCCCCATACTTAGTACAATGCGAGATCCTCCACTCATaGTTTCTTAATCTTTTGACC | + |
|
Preference number: 4 (lower is better) Translates to: QQFLRECLLCGSPYLVQCEILHS*FLNLLT Trigger: GGTCAAAAGATTAAGAAATCATGAGTGGAGGATCTC...GCATTGTACTAAGTATGGGGAACCACAGAGAAGACATTCCCTCAGAAACTGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000298784.5 ENST00000298786.5 |
||
| CDS-3UTR TCA 90 bp | GTTTCTGAGGGAATGTCTTCTCTGTGGTTCCCCATACTTAGTACAATGCCTGGAGAGATCCTCCACTCATaGTTTCTTAATCTTTTGACC | + |
|
Preference number: 4 (lower is better) Translates to: VSEGMSSLWFPILSTMPGEILHS*FLNLLT Trigger: GGTCAAAAGATTAAGAAATCATGAGTGGAGGATCTC...TCCAGGCATTGTACTAAGTATGGGGAACCACAGAGAAGACATTCCCTCAGAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000298784.5 ENST00000298786.5 |
||
| CDS-3UTR GCA 90 bp | GTTTCTGAGGGAATGTCTTCTCTGTGGTTCCCCATACTTAGTACAATGCCTGGATCTATAACTGTATACTaGCTCTGTCAGTATAGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: VSEGMSSLWFPILSTMPGSITVY*LCQYSE Trigger: TTCACTATACTGACAGAGGCAGTATACAGTTATAGA...TCCAGGCATTGTACTAAGTATGGGGAACCACAGAGAAGACATTCCCTCAGAAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000298784.5 ENST00000298786.5 |
||