RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SHISA8 (Homo sapiens)

Ensembl gene IDs: ENSG00000234965

Ensembl transcript IDs: ENST00000457093.1, ENST00000621082.1, ENST00000621082.2

Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GACAGAAGAGCTGGCCTTACGGCAGGCGCTCCTCTCCCTGTGGCCTaGGGCTCCGACGGGCAGACAGGACCCCAGCCCATGCCTCGAGGG +
Preference number: 1 (lower is better)
Translates to: DRRAGLTAGAPLPVA*GSDGQTGPQPMPRG
Trigger: CCCTCGAGGCATGGGCTGGGGTCCTGTCTGCCCGTCGGAGCCTCAGGCCACAGGGAGAGGAGCGCCTGCCGTAAGGCCAGCTCTTCTGTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621082.1
3UTR CCA 90 bp AGGCAGACAGAAGAGCTGGCCTTACGGCAGGCGCTCCTCTCCCTGTaGCCTGAGGCTCCGACGGGCAGACAGGACCCCAGCCCATGCCTC +
Preference number: 1 (lower is better)
Translates to: RQTEELALRQALLSL*PEAPTGRQDPSPCL
Trigger: GAGGCATGGGCTGGGGTCCTGTCTGCCCGTCGGAGCCTCAGGCCACAGGGAGAGGAGCGCCTGCCGTAAGGCCAGCTCTTCTGTCTGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621082.1
3UTR TCA 90 bp ACAAGACGAACCCGCGGCCTGCAGGCTCCAAGACACCACTGCCGTTaGGGCAGACAGAAGAGCTGGCCTTACGGCAGGCGCTCCTCTCCC +
Preference number: 1 (lower is better)
Translates to: TRRTRGLQAPRHHCR*GRQKSWPYGRRSSP
Trigger: GGGAGAGGAGCGCCTGCCGTAAGGCCAGCTCTTCTGTCTGCCTCAACGGCAGTGGTGTCTTGGAGCCTGCAGGCCGCGGGTTCGTCTTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000621082.1
3UTR GCA 90 bp CAGGAACCACATAAAAGGGCTTATTTACAAGACGAACCCGCGGCCTaGAGGCTCCAAGACACCACTGCCGTTGAGGCAGACAGAAGAGCT +
Preference number: 1 (lower is better)
Translates to: QEPHKRAYLQDEPAA*RLQDTTAVEADRRA
Trigger: AGCTCTTCTGTCTGCCTCAACGGCAGTGGTGTCTTGGAGCCTGCAGGCCGCGGGTTCGTCTTGTAAATAAGCCCTTTTATGTGGTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621082.1
3UTR CAA 90 bp TACAAGACGAACCCGCGGCCTGCAGGCTCCAAGACACCACTGCCGTaGAGGCAGACAGAAGAGCTGGCCTTACGGCAGGCGCTCCTCTCC +
Preference number: 2 (lower is better)
Translates to: YKTNPRPAGSKTPLP*RQTEELALRQALLS
Trigger: GGAGAGGAGCGCCTGCCGTAAGGCCAGCTCTTCTGTCTGCCTCAACGGCAGTGGTGTCTTGGAGCCTGCAGGCCGCGGGTTCGTCTTGTA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000621082.1
3UTR-3UTR GCA 90 bp CAGGAACCACATAAAAGGGCTTATTTACAAGACGAACCCGCGGCCTGCAGGCTCCAGGACCCCAGCCCATaGCTCGAGGGCACCGCGGCC +
Preference number: 2 (lower is better)
Translates to: QEPHKRAYLQDEPAACRLQDPSP*LEGTAA
Trigger: GGCCGCGGTGCCCTCGAGGCATGGGCTGGGGTCCTG...GAGCCTGCAGGCCGCGGGTTCGTCTTGTAAATAAGCCCTTTTATGTGGTTCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000621082.1
3UTR-3UTR CCA 90 bp AGGGGCAGGAACCACATAAAAGGGCTTATTTACAAGACGAACCCGCGGCCTGCAGCGCTCCTCTCCCTGTaGCCTGAGGCTCCGACGGGC +
Preference number: 2 (lower is better)
Translates to: RGRNHIKGLIYKTNPRPAALLSL*PEAPTG
Trigger: GCCCGTCGGAGCCTCAGGCCACAGGGAGAGGAGCGC...TGCAGGCCGCGGGTTCGTCTTGTAAATAAGCCCTTTTATGTGGTTCCTGCCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000621082.1
3UTR TCA 72 bp GCTGGCCTTACGGCAGGCGCTCCTCTCCCTGTGGCCTaGGGCTCCGACGGGCAGACAGGACCCCAGCCCATG +
Preference number: 3 (lower is better)
Translates to: AGLTAGAPLPVA*GSDGQTGPQPM
Trigger: CATGGGCTGGGGTCCTGTCTGCCCGTCGGAGCCTCAGGCCACAGGGAGAGGAGCGCCTGCCGTAAGGCCAGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621082.1
3UTR CCA 72 bp GAAGAGCTGGCCTTACGGCAGGCGCTCCTCTCCCTGTaGCCTGAGGCTCCGACGGGCAGACAGGACCCCAGC +
Preference number: 3 (lower is better)
Translates to: EELALRQALLSL*PEAPTGRQDPS
Trigger: GCTGGGGTCCTGTCTGCCCGTCGGAGCCTCAGGCCACAGGGAGAGGAGCGCCTGCCGTAAGGCCAGCTCTTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621082.1
3UTR GCA 72 bp CATAAAAGGGCTTATTTACAAGACGAACCCGCGGCCTaGAGGCTCCAAGACACCACTGCCGTTGAGGCAGAC +
Preference number: 3 (lower is better)
Translates to: HKRAYLQDEPAA*RLQDTTAVEAD
Trigger: GTCTGCCTCAACGGCAGTGGTGTCTTGGAGCCTGCAGGCCGCGGGTTCGTCTTGTAAATAAGCCCTTTTATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621082.1
CDS TCA 90 bp CTCCGCCCGGGCTCACCTCGGACCCGAGCTGCCCGGTCCGCGTCCTaGGATCTTCCCCGGGCCGGGCGGCGGGTCCTCGCCTGCGCGCGG +
Preference number: 5 (lower is better)
Translates to: LRPGSPRTRAARSAS*DLPRAGRRVLACAR
Trigger: CCGCGCGCAGGCGAGGACCCGCCGCCCGGCCCGGGGAAGATCTCAGGACGCGGACCGGGCAGCTCGGGTCCGAGGTGAGCCCGGGCGGAG
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621082.2
CDS CCA 90 bp GCGGCTCCCTCCGGCTCGGCTCCTCCGCTCCCGCAGGGATCGCGCTaGCTCCCGGCGCACGCCGCCTCGGCCGTCGGCCTCCTCTGGGGA +
Preference number: 5 (lower is better)
Translates to: AAPSGSAPPLPQGSR*LPAHAASAVGLLWG
Trigger: TCCCCAGAGGAGGCCGACGGCCGAGGCGGCGTGCGCCGGGAGCCAGCGCGATCCCTGCGGGAGCGGAGGAGCCGAGCCGGAGGGAGCCGC
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621082.2
CDS CCA 90 bp ACACTGAACTGGCGCCGGGCCGCGTGCCCGGGTCGCCGGGGTACCTaGAAGGCCCGAGCCGTCGGGTGGCTGAGCGGGGCGGGCCGGGCC +
Preference number: 5 (lower is better)
Translates to: TLNWRRAACPGRRGT*KARAVGWLSGAGRA
Trigger: GGCCCGGCCCGCCCCGCTCAGCCACCCGACGGCTCGGGCCTTCCAGGTACCCCGGCGACCCGGGCACGCGGCCCGGCGCCAGTTCAGTGT
80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000621082.2
CDS GCA 90 bp CTCCGGTGGGCGCGTCCTCCGCCCGGGCTCACCTCGGACCCGAGCTaGCCGGTCCGCGTCCTGAGATCTTCCCCGGGCCGGGCGGCGGGT +
Preference number: 5 (lower is better)
Translates to: LRWARPPPGLTSDPS*PVRVLRSSPGRAAG
Trigger: ACCCGCCGCCCGGCCCGGGGAAGATCTCAGGACGCGGACCGGGCAGCTCGGGTCCGAGGTGAGCCCGGGCGGAGGACGCGCCCACCGGAG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621082.2
CDS CCA 90 bp TCGCGCTGGCTCCCGGCGCACGCCGCCTCGGCCGTCGGCCTCCTCTaGGGACCCCAGCCCCGAGTGGGCTGGGTCTGGAGCTCCGAGGCC +
Preference number: 5 (lower is better)
Translates to: SRWLPAHAASAVGLL*GPQPRVGWVWSSEA
Trigger: GGCCTCGGAGCTCCAGACCCAGCCCACTCGGGGCTGGGGTCCCCAGAGGAGGCCGACGGCCGAGGCGGCGTGCGCCGGGAGCCAGCGCGA
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000621082.2
CDS CCA 90 bp AGCCCCGAGTGGGCTGGGTCTGGAGCTCCGAGGCCGCACCTCCGGTaGGCGCGTCCTCCGCCCGGGCTCACCTCGGACCCGAGCTGCCCG +
Preference number: 5 (lower is better)
Translates to: SPEWAGSGAPRPHLR*ARPPPGLTSDPSCP
Trigger: CGGGCAGCTCGGGTCCGAGGTGAGCCCGGGCGGAGGACGCGCCCACCGGAGGTGCGGCCTCGGAGCTCCAGACCCAGCCCACTCGGGGCT
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621082.2
CDS GCA 90 bp GCGCGCGCGGGCTGTGCGCCCTCTCCAGTCCCAGGCGCGCCCCGATaGCGGCCAGCACCAGCAGCGCTGCGACGCCGCACACAGCGTAGA +
Preference number: 5 (lower is better)
Translates to: ARAGCAPSPVPGAPR*RPAPAALRRRTQRR
Trigger: TCTACGCTGTGTGCGGCGTCGCAGCGCTGCTGGTGCTGGCCGGCATCGGGGCGCGCCTGGGACTGGAGAGGGCGCACAGCCCGCGCGCGC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000457093.1
ENST00000621082.2
CDS GCA 90 bp AGCTCTGTCAGCGCCCTGGTCACTGTGCGCCGCGCGCGCGGGCTGTaGGCCCTCTCCAGTCCCAGGCGCGCCCCGATGCCGGCCAGCACC +
Preference number: 5 (lower is better)
Translates to: SSVSALVTVRRARGL*ALSSPRRAPMPAST
Trigger: GGTGCTGGCCGGCATCGGGGCGCGCCTGGGACTGGAGAGGGCGCACAGCCCGCGCGCGCGGCGCACAGTGACCAGGGCGCTGACAGAGCT
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000457093.1
ENST00000621082.2
CDS GCA 90 bp CTCCAGTCCCAGGCGCGCCCCGATGCCGGCCAGCACCAGCAGCGCTaGGACGCCGCACACAGCGTAGACGGCCGTATGGCTGCGCTCGCG +
Preference number: 5 (lower is better)
Translates to: LQSQARPDAGQHQQR*DAAHSVDGRMAALA
Trigger: CGCGAGCGCAGCCATACGGCCGTCTACGCTGTGTGCGGCGTCGCAGCGCTGCTGGTGCTGGCCGGCATCGGGGCGCGCCTGGGACTGGAG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000457093.1
ENST00000621082.2
CDS CCA 90 bp CCGGGGAGCTGCGGGTTGAAGGTCTCAGGCATCTTCACACTGAACTaGCGCCGGGCCGCGTGCCCGGGTCGCCGGGGTACCTGGAAGGCC +
Preference number: 5 (lower is better)
Translates to: PGSCGLKVSGIFTLN*RRAACPGRRGTWKA
Trigger: GGCCTTCCAGGTACCCCGGCGACCCGGGCACGCGGCCCGGCGCCAGTTCAGTGTGAAGATGCCTGAGACCTTCAACCCGCAGCTCCCCGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000621082.2
CDS GCA 90 bp TTGAAGGTCTCAGGCATCTTCACACTGAACTGGCGCCGGGCCGCGTaGCCGGGTCGCCGGGGTACCTGGAAGGCCCGAGCCGTCGGGTGG +
Preference number: 5 (lower is better)
Translates to: LKVSGIFTLNWRRAA*PGRRGTWKARAVGW
Trigger: CCACCCGACGGCTCGGGCCTTCCAGGTACCCCGGCGACCCGGGCACGCGGCCCGGCGCCAGTTCAGTGTGAAGATGCCTGAGACCTTCAA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621082.2
CDS TCA 90 bp ACCCCAGCCCATGCCTCGAGGGCACCGCGGCCCCGCTTCACACGGTaGCCTCGGTCTTGCTATTGGTCCTTAGGTACCGGGACCCGCGGC +
Preference number: 5 (lower is better)
Translates to: TPAHASRAPRPRFTR*PRSCYWSLGTGTRG
Trigger: GCCGCGGGTCCCGGTACCTAAGGACCAATAGCAAGACCGAGGTCACCGTGTGAAGCGGGGCCGCGGTGCCCTCGAGGCATGGGCTGGGGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000621082.2
CDS GCA 72 bp AGCGCCCTGGTCACTGTGCGCCGCGCGCGCGGGCTGTaGGCCCTCTCCAGTCCCAGGCGCGCCCCGATGCCG +
Preference number: 6 (lower is better)
Translates to: SALVTVRRARGL*ALSSPRRAPMP
Trigger: CGGCATCGGGGCGCGCCTGGGACTGGAGAGGGCGCACAGCCCGCGCGCGCGGCGCACAGTGACCAGGGCGCT
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000457093.1
ENST00000621082.2
CDS CCA 72 bp CTCCCGGCGCACGCCGCCTCGGCCGTCGGCCTCCTCTaGGGACCCCAGCCCCGAGTGGGCTGGGTCTGGAGC +
Preference number: 6 (lower is better)
Translates to: LPAHAASAVGLL*GPQPRVGWVWS
Trigger: GCTCCAGACCCAGCCCACTCGGGGCTGGGGTCCCCAGAGGAGGCCGACGGCCGAGGCGGCGTGCGCCGGGAG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000621082.2
CDS GCA 72 bp GCGCGTCCTCCGCCCGGGCTCACCTCGGACCCGAGCTaGCCGGTCCGCGTCCTGAGATCTTCCCCGGGCCGG +
Preference number: 6 (lower is better)
Translates to: ARPPPGLTSDPS*PVRVLRSSPGR
Trigger: CCGGCCCGGGGAAGATCTCAGGACGCGGACCGGGCAGCTCGGGTCCGAGGTGAGCCCGGGCGGAGGACGCGC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621082.2
CDS GCA 72 bp CTGCGACGCCGCACACAGCGTAGACGGCCGTATGGCTaGGCTCGCGGCCGGGGTCCCGGGGCGCTGCGGTGT +
Preference number: 6 (lower is better)
Translates to: LRRRTQRRRPYG*ARGRGPGALRC
Trigger: ACACCGCAGCGCCCCGGGACCCCGGCCGCGAGCGCAGCCATACGGCCGTCTACGCTGTGTGCGGCGTCGCAG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000457093.1
ENST00000621082.2
CDS GCA 72 bp CCTGAGGCTCCGACGGGCAGACAGGACCCCAGCCCATaGCTCGAGGGCACCGCGGCCCCGCTTCACACGGTG +
Preference number: 6 (lower is better)
Translates to: PEAPTGRQDPSP*LEGTAAPLHTV
Trigger: CACCGTGTGAAGCGGGGCCGCGGTGCCCTCGAGGCATGGGCTGGGGTCCTGTCTGCCCGTCGGAGCCTCAGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000621082.2
CDS GCA 72 bp TCAGGCATCTTCACACTGAACTGGCGCCGGGCCGCGTaGCCGGGTCGCCGGGGTACCTGGAAGGCCCGAGCC +
Preference number: 6 (lower is better)
Translates to: SGIFTLNWRRAA*PGRRGTWKARA
Trigger: GGCTCGGGCCTTCCAGGTACCCCGGCGACCCGGGCACGCGGCCCGGCGCCAGTTCAGTGTGAAGATGCCTGA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621082.2
CDS CCA 72 bp CGCGGCGGCCTTGAACGTGGCGTACTTGGCGTAGTCTaGCTGCAGCGTCAGGCTGCCGCCGCCCTGCAGCCG +
Preference number: 6 (lower is better)
Translates to: RGGLERGVLGVV*LQRQAAAALQP
Trigger: CGGCTGCAGGGCGGCGGCAGCCTGACGCTGCAGCCAGACTACGCCAAGTACGCCACGTTCAAGGCCGCCGCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000621082.2
CDS CAA 90 bp TGCCTCGAGGGCACCGCGGCCCCGCTTCACACGGTGACCTCGGTCTaGCTATTGGTCCTTAGGTACCGGGACCCGCGGCCCGCGCTGCCG +
Preference number: 6 (lower is better)
Translates to: CLEGTAAPLHTVTSV*LLVLRYRDPRPALP
Trigger: CGGCAGCGCGGGCCGCGGGTCCCGGTACCTAAGGACCAATAGCAAGACCGAGGTCACCGTGTGAAGCGGGGCCGCGGTGCCCTCGAGGCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621082.2
CDS CCA 72 bp TGCGGGTTGAAGGTCTCAGGCATCTTCACACTGAACTaGCGCCGGGCCGCGTGCCCGGGTCGCCGGGGTACC +
Preference number: 6 (lower is better)
Translates to: CGLKVSGIFTLN*RRAACPGRRGT
Trigger: GGTACCCCGGCGACCCGGGCACGCGGCCCGGCGCCAGTTCAGTGTGAAGATGCCTGAGACCTTCAACCCGCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621082.2
CDS CAA 72 bp GCGGCCCCGCTTCACACGGTGACCTCGGTCTTGCTATaGGTCCTTAGGTACCGGGACCCGCGGCCCGCGCTG +
Preference number: 6 (lower is better)
Translates to: AAPLHTVTSVLL*VLRYRDPRPAL
Trigger: CAGCGCGGGCCGCGGGTCCCGGTACCTAAGGACCAATAGCAAGACCGAGGTCACCGTGTGAAGCGGGGCCGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621082.2
CDS CAA 72 bp GGCACCGCGGCCCCGCTTCACACGGTGACCTCGGTCTaGCTATTGGTCCTTAGGTACCGGGACCCGCGGCCC +
Preference number: 6 (lower is better)
Translates to: GTAAPLHTVTSV*LLVLRYRDPRP
Trigger: GGGCCGCGGGTCCCGGTACCTAAGGACCAATAGCAAGACCGAGGTCACCGTGTGAAGCGGGGCCGCGGTGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621082.2
CDS TCA 72 bp CATGCCTCGAGGGCACCGCGGCCCCGCTTCACACGGTaGCCTCGGTCTTGCTATTGGTCCTTAGGTACCGGG +
Preference number: 6 (lower is better)
Translates to: HASRAPRPRFTR*PRSCYWSLGTG
Trigger: CCCGGTACCTAAGGACCAATAGCAAGACCGAGGTCACCGTGTGAAGCGGGGCCGCGGTGCCCTCGAGGCATG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000621082.2