Pregenerated sensors for SHISA8 (Homo sapiens)
Ensembl gene IDs: ENSG00000234965Ensembl transcript IDs: ENST00000457093.1, ENST00000621082.1, ENST00000621082.2
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR TCA 90 bp | GACAGAAGAGCTGGCCTTACGGCAGGCGCTCCTCTCCCTGTGGCCTaGGGCTCCGACGGGCAGACAGGACCCCAGCCCATGCCTCGAGGG | + |
Preference number: 1 (lower is better) Translates to: DRRAGLTAGAPLPVA*GSDGQTGPQPMPRG Trigger: CCCTCGAGGCATGGGCTGGGGTCCTGTCTGCCCGTCGGAGCCTCAGGCCACAGGGAGAGGAGCGCCTGCCGTAAGGCCAGCTCTTCTGTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621082.1 |
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3UTR CCA 90 bp | AGGCAGACAGAAGAGCTGGCCTTACGGCAGGCGCTCCTCTCCCTGTaGCCTGAGGCTCCGACGGGCAGACAGGACCCCAGCCCATGCCTC | + |
Preference number: 1 (lower is better) Translates to: RQTEELALRQALLSL*PEAPTGRQDPSPCL Trigger: GAGGCATGGGCTGGGGTCCTGTCTGCCCGTCGGAGCCTCAGGCCACAGGGAGAGGAGCGCCTGCCGTAAGGCCAGCTCTTCTGTCTGCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621082.1 |
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3UTR TCA 90 bp | ACAAGACGAACCCGCGGCCTGCAGGCTCCAAGACACCACTGCCGTTaGGGCAGACAGAAGAGCTGGCCTTACGGCAGGCGCTCCTCTCCC | + |
Preference number: 1 (lower is better) Translates to: TRRTRGLQAPRHHCR*GRQKSWPYGRRSSP Trigger: GGGAGAGGAGCGCCTGCCGTAAGGCCAGCTCTTCTGTCTGCCTCAACGGCAGTGGTGTCTTGGAGCCTGCAGGCCGCGGGTTCGTCTTGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000621082.1 |
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3UTR GCA 90 bp | CAGGAACCACATAAAAGGGCTTATTTACAAGACGAACCCGCGGCCTaGAGGCTCCAAGACACCACTGCCGTTGAGGCAGACAGAAGAGCT | + |
Preference number: 1 (lower is better) Translates to: QEPHKRAYLQDEPAA*RLQDTTAVEADRRA Trigger: AGCTCTTCTGTCTGCCTCAACGGCAGTGGTGTCTTGGAGCCTGCAGGCCGCGGGTTCGTCTTGTAAATAAGCCCTTTTATGTGGTTCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621082.1 |
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3UTR CAA 90 bp | TACAAGACGAACCCGCGGCCTGCAGGCTCCAAGACACCACTGCCGTaGAGGCAGACAGAAGAGCTGGCCTTACGGCAGGCGCTCCTCTCC | + |
Preference number: 2 (lower is better) Translates to: YKTNPRPAGSKTPLP*RQTEELALRQALLS Trigger: GGAGAGGAGCGCCTGCCGTAAGGCCAGCTCTTCTGTCTGCCTCAACGGCAGTGGTGTCTTGGAGCCTGCAGGCCGCGGGTTCGTCTTGTA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000621082.1 |
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3UTR-3UTR GCA 90 bp | CAGGAACCACATAAAAGGGCTTATTTACAAGACGAACCCGCGGCCTGCAGGCTCCAGGACCCCAGCCCATaGCTCGAGGGCACCGCGGCC | + |
Preference number: 2 (lower is better) Translates to: QEPHKRAYLQDEPAACRLQDPSP*LEGTAA Trigger: GGCCGCGGTGCCCTCGAGGCATGGGCTGGGGTCCTG...GAGCCTGCAGGCCGCGGGTTCGTCTTGTAAATAAGCCCTTTTATGTGGTTCCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000621082.1 |
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3UTR-3UTR CCA 90 bp | AGGGGCAGGAACCACATAAAAGGGCTTATTTACAAGACGAACCCGCGGCCTGCAGCGCTCCTCTCCCTGTaGCCTGAGGCTCCGACGGGC | + |
Preference number: 2 (lower is better) Translates to: RGRNHIKGLIYKTNPRPAALLSL*PEAPTG Trigger: GCCCGTCGGAGCCTCAGGCCACAGGGAGAGGAGCGC...TGCAGGCCGCGGGTTCGTCTTGTAAATAAGCCCTTTTATGTGGTTCCTGCCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000621082.1 |
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3UTR TCA 72 bp | GCTGGCCTTACGGCAGGCGCTCCTCTCCCTGTGGCCTaGGGCTCCGACGGGCAGACAGGACCCCAGCCCATG | + |
Preference number: 3 (lower is better) Translates to: AGLTAGAPLPVA*GSDGQTGPQPM Trigger: CATGGGCTGGGGTCCTGTCTGCCCGTCGGAGCCTCAGGCCACAGGGAGAGGAGCGCCTGCCGTAAGGCCAGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621082.1 |
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3UTR CCA 72 bp | GAAGAGCTGGCCTTACGGCAGGCGCTCCTCTCCCTGTaGCCTGAGGCTCCGACGGGCAGACAGGACCCCAGC | + |
Preference number: 3 (lower is better) Translates to: EELALRQALLSL*PEAPTGRQDPS Trigger: GCTGGGGTCCTGTCTGCCCGTCGGAGCCTCAGGCCACAGGGAGAGGAGCGCCTGCCGTAAGGCCAGCTCTTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621082.1 |
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3UTR GCA 72 bp | CATAAAAGGGCTTATTTACAAGACGAACCCGCGGCCTaGAGGCTCCAAGACACCACTGCCGTTGAGGCAGAC | + |
Preference number: 3 (lower is better) Translates to: HKRAYLQDEPAA*RLQDTTAVEAD Trigger: GTCTGCCTCAACGGCAGTGGTGTCTTGGAGCCTGCAGGCCGCGGGTTCGTCTTGTAAATAAGCCCTTTTATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621082.1 |
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CDS TCA 90 bp | CTCCGCCCGGGCTCACCTCGGACCCGAGCTGCCCGGTCCGCGTCCTaGGATCTTCCCCGGGCCGGGCGGCGGGTCCTCGCCTGCGCGCGG | + |
Preference number: 5 (lower is better) Translates to: LRPGSPRTRAARSAS*DLPRAGRRVLACAR Trigger: CCGCGCGCAGGCGAGGACCCGCCGCCCGGCCCGGGGAAGATCTCAGGACGCGGACCGGGCAGCTCGGGTCCGAGGTGAGCCCGGGCGGAG 80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621082.2 |
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CDS CCA 90 bp | GCGGCTCCCTCCGGCTCGGCTCCTCCGCTCCCGCAGGGATCGCGCTaGCTCCCGGCGCACGCCGCCTCGGCCGTCGGCCTCCTCTGGGGA | + |
Preference number: 5 (lower is better) Translates to: AAPSGSAPPLPQGSR*LPAHAASAVGLLWG Trigger: TCCCCAGAGGAGGCCGACGGCCGAGGCGGCGTGCGCCGGGAGCCAGCGCGATCCCTGCGGGAGCGGAGGAGCCGAGCCGGAGGGAGCCGC 80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621082.2 |
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CDS CCA 90 bp | ACACTGAACTGGCGCCGGGCCGCGTGCCCGGGTCGCCGGGGTACCTaGAAGGCCCGAGCCGTCGGGTGGCTGAGCGGGGCGGGCCGGGCC | + |
Preference number: 5 (lower is better) Translates to: TLNWRRAACPGRRGT*KARAVGWLSGAGRA Trigger: GGCCCGGCCCGCCCCGCTCAGCCACCCGACGGCTCGGGCCTTCCAGGTACCCCGGCGACCCGGGCACGCGGCCCGGCGCCAGTTCAGTGT 80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000621082.2 |
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CDS GCA 90 bp | CTCCGGTGGGCGCGTCCTCCGCCCGGGCTCACCTCGGACCCGAGCTaGCCGGTCCGCGTCCTGAGATCTTCCCCGGGCCGGGCGGCGGGT | + |
Preference number: 5 (lower is better) Translates to: LRWARPPPGLTSDPS*PVRVLRSSPGRAAG Trigger: ACCCGCCGCCCGGCCCGGGGAAGATCTCAGGACGCGGACCGGGCAGCTCGGGTCCGAGGTGAGCCCGGGCGGAGGACGCGCCCACCGGAG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621082.2 |
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CDS CCA 90 bp | TCGCGCTGGCTCCCGGCGCACGCCGCCTCGGCCGTCGGCCTCCTCTaGGGACCCCAGCCCCGAGTGGGCTGGGTCTGGAGCTCCGAGGCC | + |
Preference number: 5 (lower is better) Translates to: SRWLPAHAASAVGLL*GPQPRVGWVWSSEA Trigger: GGCCTCGGAGCTCCAGACCCAGCCCACTCGGGGCTGGGGTCCCCAGAGGAGGCCGACGGCCGAGGCGGCGTGCGCCGGGAGCCAGCGCGA 79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000621082.2 |
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CDS CCA 90 bp | AGCCCCGAGTGGGCTGGGTCTGGAGCTCCGAGGCCGCACCTCCGGTaGGCGCGTCCTCCGCCCGGGCTCACCTCGGACCCGAGCTGCCCG | + |
Preference number: 5 (lower is better) Translates to: SPEWAGSGAPRPHLR*ARPPPGLTSDPSCP Trigger: CGGGCAGCTCGGGTCCGAGGTGAGCCCGGGCGGAGGACGCGCCCACCGGAGGTGCGGCCTCGGAGCTCCAGACCCAGCCCACTCGGGGCT 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621082.2 |
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CDS GCA 90 bp | GCGCGCGCGGGCTGTGCGCCCTCTCCAGTCCCAGGCGCGCCCCGATaGCGGCCAGCACCAGCAGCGCTGCGACGCCGCACACAGCGTAGA | + |
Preference number: 5 (lower is better) Translates to: ARAGCAPSPVPGAPR*RPAPAALRRRTQRR Trigger: TCTACGCTGTGTGCGGCGTCGCAGCGCTGCTGGTGCTGGCCGGCATCGGGGCGCGCCTGGGACTGGAGAGGGCGCACAGCCCGCGCGCGC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000457093.1 ENST00000621082.2 |
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CDS GCA 90 bp | AGCTCTGTCAGCGCCCTGGTCACTGTGCGCCGCGCGCGCGGGCTGTaGGCCCTCTCCAGTCCCAGGCGCGCCCCGATGCCGGCCAGCACC | + |
Preference number: 5 (lower is better) Translates to: SSVSALVTVRRARGL*ALSSPRRAPMPAST Trigger: GGTGCTGGCCGGCATCGGGGCGCGCCTGGGACTGGAGAGGGCGCACAGCCCGCGCGCGCGGCGCACAGTGACCAGGGCGCTGACAGAGCT 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000457093.1 ENST00000621082.2 |
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CDS GCA 90 bp | CTCCAGTCCCAGGCGCGCCCCGATGCCGGCCAGCACCAGCAGCGCTaGGACGCCGCACACAGCGTAGACGGCCGTATGGCTGCGCTCGCG | + |
Preference number: 5 (lower is better) Translates to: LQSQARPDAGQHQQR*DAAHSVDGRMAALA Trigger: CGCGAGCGCAGCCATACGGCCGTCTACGCTGTGTGCGGCGTCGCAGCGCTGCTGGTGCTGGCCGGCATCGGGGCGCGCCTGGGACTGGAG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000457093.1 ENST00000621082.2 |
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CDS CCA 90 bp | CCGGGGAGCTGCGGGTTGAAGGTCTCAGGCATCTTCACACTGAACTaGCGCCGGGCCGCGTGCCCGGGTCGCCGGGGTACCTGGAAGGCC | + |
Preference number: 5 (lower is better) Translates to: PGSCGLKVSGIFTLN*RRAACPGRRGTWKA Trigger: GGCCTTCCAGGTACCCCGGCGACCCGGGCACGCGGCCCGGCGCCAGTTCAGTGTGAAGATGCCTGAGACCTTCAACCCGCAGCTCCCCGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000621082.2 |
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CDS GCA 90 bp | TTGAAGGTCTCAGGCATCTTCACACTGAACTGGCGCCGGGCCGCGTaGCCGGGTCGCCGGGGTACCTGGAAGGCCCGAGCCGTCGGGTGG | + |
Preference number: 5 (lower is better) Translates to: LKVSGIFTLNWRRAA*PGRRGTWKARAVGW Trigger: CCACCCGACGGCTCGGGCCTTCCAGGTACCCCGGCGACCCGGGCACGCGGCCCGGCGCCAGTTCAGTGTGAAGATGCCTGAGACCTTCAA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621082.2 |
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CDS TCA 90 bp | ACCCCAGCCCATGCCTCGAGGGCACCGCGGCCCCGCTTCACACGGTaGCCTCGGTCTTGCTATTGGTCCTTAGGTACCGGGACCCGCGGC | + |
Preference number: 5 (lower is better) Translates to: TPAHASRAPRPRFTR*PRSCYWSLGTGTRG Trigger: GCCGCGGGTCCCGGTACCTAAGGACCAATAGCAAGACCGAGGTCACCGTGTGAAGCGGGGCCGCGGTGCCCTCGAGGCATGGGCTGGGGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000621082.2 |
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CDS GCA 72 bp | AGCGCCCTGGTCACTGTGCGCCGCGCGCGCGGGCTGTaGGCCCTCTCCAGTCCCAGGCGCGCCCCGATGCCG | + |
Preference number: 6 (lower is better) Translates to: SALVTVRRARGL*ALSSPRRAPMP Trigger: CGGCATCGGGGCGCGCCTGGGACTGGAGAGGGCGCACAGCCCGCGCGCGCGGCGCACAGTGACCAGGGCGCT 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000457093.1 ENST00000621082.2 |
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CDS CCA 72 bp | CTCCCGGCGCACGCCGCCTCGGCCGTCGGCCTCCTCTaGGGACCCCAGCCCCGAGTGGGCTGGGTCTGGAGC | + |
Preference number: 6 (lower is better) Translates to: LPAHAASAVGLL*GPQPRVGWVWS Trigger: GCTCCAGACCCAGCCCACTCGGGGCTGGGGTCCCCAGAGGAGGCCGACGGCCGAGGCGGCGTGCGCCGGGAG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000621082.2 |
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CDS GCA 72 bp | GCGCGTCCTCCGCCCGGGCTCACCTCGGACCCGAGCTaGCCGGTCCGCGTCCTGAGATCTTCCCCGGGCCGG | + |
Preference number: 6 (lower is better) Translates to: ARPPPGLTSDPS*PVRVLRSSPGR Trigger: CCGGCCCGGGGAAGATCTCAGGACGCGGACCGGGCAGCTCGGGTCCGAGGTGAGCCCGGGCGGAGGACGCGC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621082.2 |
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CDS GCA 72 bp | CTGCGACGCCGCACACAGCGTAGACGGCCGTATGGCTaGGCTCGCGGCCGGGGTCCCGGGGCGCTGCGGTGT | + |
Preference number: 6 (lower is better) Translates to: LRRRTQRRRPYG*ARGRGPGALRC Trigger: ACACCGCAGCGCCCCGGGACCCCGGCCGCGAGCGCAGCCATACGGCCGTCTACGCTGTGTGCGGCGTCGCAG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000457093.1 ENST00000621082.2 |
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CDS GCA 72 bp | CCTGAGGCTCCGACGGGCAGACAGGACCCCAGCCCATaGCTCGAGGGCACCGCGGCCCCGCTTCACACGGTG | + |
Preference number: 6 (lower is better) Translates to: PEAPTGRQDPSP*LEGTAAPLHTV Trigger: CACCGTGTGAAGCGGGGCCGCGGTGCCCTCGAGGCATGGGCTGGGGTCCTGTCTGCCCGTCGGAGCCTCAGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000621082.2 |
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CDS GCA 72 bp | TCAGGCATCTTCACACTGAACTGGCGCCGGGCCGCGTaGCCGGGTCGCCGGGGTACCTGGAAGGCCCGAGCC | + |
Preference number: 6 (lower is better) Translates to: SGIFTLNWRRAA*PGRRGTWKARA Trigger: GGCTCGGGCCTTCCAGGTACCCCGGCGACCCGGGCACGCGGCCCGGCGCCAGTTCAGTGTGAAGATGCCTGA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621082.2 |
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CDS CCA 72 bp | CGCGGCGGCCTTGAACGTGGCGTACTTGGCGTAGTCTaGCTGCAGCGTCAGGCTGCCGCCGCCCTGCAGCCG | + |
Preference number: 6 (lower is better) Translates to: RGGLERGVLGVV*LQRQAAAALQP Trigger: CGGCTGCAGGGCGGCGGCAGCCTGACGCTGCAGCCAGACTACGCCAAGTACGCCACGTTCAAGGCCGCCGCG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000621082.2 |
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CDS CAA 90 bp | TGCCTCGAGGGCACCGCGGCCCCGCTTCACACGGTGACCTCGGTCTaGCTATTGGTCCTTAGGTACCGGGACCCGCGGCCCGCGCTGCCG | + |
Preference number: 6 (lower is better) Translates to: CLEGTAAPLHTVTSV*LLVLRYRDPRPALP Trigger: CGGCAGCGCGGGCCGCGGGTCCCGGTACCTAAGGACCAATAGCAAGACCGAGGTCACCGTGTGAAGCGGGGCCGCGGTGCCCTCGAGGCA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621082.2 |
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CDS CCA 72 bp | TGCGGGTTGAAGGTCTCAGGCATCTTCACACTGAACTaGCGCCGGGCCGCGTGCCCGGGTCGCCGGGGTACC | + |
Preference number: 6 (lower is better) Translates to: CGLKVSGIFTLN*RRAACPGRRGT Trigger: GGTACCCCGGCGACCCGGGCACGCGGCCCGGCGCCAGTTCAGTGTGAAGATGCCTGAGACCTTCAACCCGCA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621082.2 |
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CDS CAA 72 bp | GCGGCCCCGCTTCACACGGTGACCTCGGTCTTGCTATaGGTCCTTAGGTACCGGGACCCGCGGCCCGCGCTG | + |
Preference number: 6 (lower is better) Translates to: AAPLHTVTSVLL*VLRYRDPRPAL Trigger: CAGCGCGGGCCGCGGGTCCCGGTACCTAAGGACCAATAGCAAGACCGAGGTCACCGTGTGAAGCGGGGCCGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621082.2 |
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CDS CAA 72 bp | GGCACCGCGGCCCCGCTTCACACGGTGACCTCGGTCTaGCTATTGGTCCTTAGGTACCGGGACCCGCGGCCC | + |
Preference number: 6 (lower is better) Translates to: GTAAPLHTVTSV*LLVLRYRDPRP Trigger: GGGCCGCGGGTCCCGGTACCTAAGGACCAATAGCAAGACCGAGGTCACCGTGTGAAGCGGGGCCGCGGTGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621082.2 |
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CDS TCA 72 bp | CATGCCTCGAGGGCACCGCGGCCCCGCTTCACACGGTaGCCTCGGTCTTGCTATTGGTCCTTAGGTACCGGG | + |
Preference number: 6 (lower is better) Translates to: HASRAPRPRFTR*PRSCYWSLGTG Trigger: CCCGGTACCTAAGGACCAATAGCAAGACCGAGGTCACCGTGTGAAGCGGGGCCGCGGTGCCCTCGAGGCATG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621082.2 |