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Pregenerated sensors for SHISA3 (Homo sapiens)

Ensembl gene IDs: ENSG00000178343

Ensembl transcript IDs: ENST00000319234.5

Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp TCAGGGCGCACAGCGATTCCGCCTCCCCAGGGACACGTCGCAAGCTaGTGGCCCCGGCGGCCGAAGCCAGTCCTGCGTGGGATAGCAGGG +
Preference number: 5 (lower is better)
Translates to: SGRTAIPPPQGHVAS*WPRRPKPVLRGIAG
Trigger: CCCTGCTATCCCACGCAGGACTGGCTTCGGCCGCCGGGGCCAGCAGCTTGCGACGTGTCCCTGGGGAGGCGGAATCGCTGTGCGCCCTGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS GCA 90 bp GCCACCTCCCTCCCCACTCCTCAAGGGAGCCATAGCGCCCGGGGCTaGCAACTCCAGCGCCGCACAGAGTCCCAACCTGTGGCGATCGCC +
Preference number: 5 (lower is better)
Translates to: ATSLPTPQGSHSARG*QLQRRTESQPVAIA
Trigger: GGCGATCGCCACAGGTTGGGACTCTGTGCGGCGCTGGAGTTGGCAGCCCCGGGCGCTATGGCTCCCTTGAGGAGTGGGGAGGGAGGTGGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS CCA 90 bp CAGCCCTGGCAAAGGAGAACCTGCGGATGGAGCCGCCTGTGGAGCTaGAGCTCGTGGCTGTGCTGGACTGCCGGGAGGGTGCCCTGGGGC +
Preference number: 5 (lower is better)
Translates to: QPWQRRTCGWSRLWS*SSWLCWTAGRVPWG
Trigger: GCCCCAGGGCACCCTCCCGGCAGTCCAGCACAGCCACGAGCTCCAGCTCCACAGGCGGCTCCATCCGCAGGTTCTCCTTTGCCAGGGCTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS CCA 90 bp CCGGCTCAGCCCTGGCAAAGGAGAACCTGCGGATGGAGCCGCCTGTaGAGCTGGAGCTCGTGGCTGTGCTGGACTGCCGGGAGGGTGCCC +
Preference number: 5 (lower is better)
Translates to: PAQPWQRRTCGWSRL*SWSSWLCWTAGRVP
Trigger: GGGCACCCTCCCGGCAGTCCAGCACAGCCACGAGCTCCAGCTCCACAGGCGGCTCCATCCGCAGGTTCTCCTTTGCCAGGGCTGAGCCGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS CCA 90 bp GAGAAGGCAAAGCGCCAGCAGTGCCCTCATCGCCACTGGGCTCCCTaGGCGGCCGGGAGCAGGACGCAGCTGGAAAGCGAAGGGCTGAGC +
Preference number: 5 (lower is better)
Translates to: EKAKRQQCPHRHWAP*AAGSRTQLESEGLS
Trigger: GCTCAGCCCTTCGCTTTCCAGCTGCGTCCTGCTCCCGGCCGCCCAGGGAGCCCAGTGGCGATGAGGGCACTGCTGGCGCTTTGCCTTCTC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS CCA 90 bp CCAGCCAAGGAGAAGGCAAAGCGCCAGCAGTGCCCTCATCGCCACTaGGCTCCCTGGGCGGCCGGGAGCAGGACGCAGCTGGAAAGCGAA +
Preference number: 5 (lower is better)
Translates to: PAKEKAKRQQCPHRH*APWAAGSRTQLESE
Trigger: TTCGCTTTCCAGCTGCGTCCTGCTCCCGGCCGCCCAGGGAGCCCAGTGGCGATGAGGGCACTGCTGGCGCTTTGCCTTCTCCTTGGCTGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS CCA 90 bp GCGCCCGGGGCTGCCAACTCCAGCGCCGCACAGAGTCCCAACCTGTaGCGATCGCCGGGTCCCGAGAGGAGCCGGAGGAAAAGAATTTGT +
Preference number: 5 (lower is better)
Translates to: APGAANSSAAQSPNL*RSPGPERSRRKRIC
Trigger: ACAAATTCTTTTCCTCCGGCTCCTCTCGGGACCCGGCGATCGCCACAGGTTGGGACTCTGTGCGGCGCTGGAGTTGGCAGCCCCGGGCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS CCA 90 bp AGCTCGTGGCTGTGCTGGACTGCCGGGAGGGTGCCCTGGGGCTGGTaGAGGTCAGGATCATGGGCAGGGTCTCTGTCTGATAGCTGCGGA +
Preference number: 5 (lower is better)
Translates to: SSWLCWTAGRVPWGW*RSGSWAGSLSDSCG
Trigger: TCCGCAGCTATCAGACAGAGACCCTGCCCATGATCCTGACCTCCACCAGCCCCAGGGCACCCTCCCGGCAGTCCAGCACAGCCACGAGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS CCA 90 bp TGGAGCTCGTGGCTGTGCTGGACTGCCGGGAGGGTGCCCTGGGGCTaGTGGAGGTCAGGATCATGGGCAGGGTCTCTGTCTGATAGCTGC +
Preference number: 5 (lower is better)
Translates to: WSSWLCWTAGRVPWG*WRSGSWAGSLSDSC
Trigger: GCAGCTATCAGACAGAGACCCTGCCCATGATCCTGACCTCCACCAGCCCCAGGGCACCCTCCCGGCAGTCCAGCACAGCCACGAGCTCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS GCA 90 bp GGCTGGTGGAGGTCAGGATCATGGGCAGGGTCTCTGTCTGATAGCTaGGGAGTGAGAAGCGGATTGGCTGCTGCGAGGGCTCCTTGGGTC +
Preference number: 5 (lower is better)
Translates to: GWWRSGSWAGSLSDS*GVRSGLAAARAPWV
Trigger: GACCCAAGGAGCCCTCGCAGCAGCCAATCCGCTTCTCACTCCGCAGCTATCAGACAGAGACCCTGCCCATGATCCTGACCTCCACCAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS TCA 90 bp GGAGGTCAGGATCATGGGCAGGGTCTCTGTCTGATAGCTGCGGAGTaGGAAGCGGATTGGCTGCTGCGAGGGCTCCTTGGGTCTCAAACA +
Preference number: 5 (lower is better)
Translates to: GGQDHGQGLCLIAAE*EADWLLRGLLGSQT
Trigger: TGTTTGAGACCCAAGGAGCCCTCGCAGCAGCCAATCCGCTTCTCACTCCGCAGCTATCAGACAGAGACCCTGCCCATGATCCTGACCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS GCA 72 bp TGCACTACGAGTTCCGCAGGCCGGGAGTCAGCATGGTaGGCGGGGCGAGTTGGCGAGGGCCTGCGGGAGGCG +
Preference number: 6 (lower is better)
Translates to: CTTSSAGRESAW*AGRVGEGLREA
Trigger: CGCCTCCCGCAGGCCCTCGCCAACTCGCCCCGCGCACCATGCTGACTCCCGGCCTGCGGAACTCGTAGTGCA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS GCA 72 bp GCGCAGCCAGCCAAGGAGAAGGCAAAGCGCCAGCAGTaGCCTCATCGCCACTGGGCTCCCTGGGCGGCCGGG +
Preference number: 6 (lower is better)
Translates to: AQPAKEKAKRQQ*PHRHWAPWAAG
Trigger: CCCGGCCGCCCAGGGAGCCCAGTGGCGATGAGGGCACTGCTGGCGCTTTGCCTTCTCCTTGGCTGGCTGCGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS CCA 72 bp ACCTGCGGATGGAGCCGCCTGTGGAGCTGGAGCTCGTaGCTGTGCTGGACTGCCGGGAGGGTGCCCTGGGGC +
Preference number: 6 (lower is better)
Translates to: TCGWSRLWSWSS*LCWTAGRVPWG
Trigger: GCCCCAGGGCACCCTCCCGGCAGTCCAGCACAGCCACGAGCTCCAGCTCCACAGGCGGCTCCATCCGCAGGT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS CCA 72 bp GCGATTCCGCCTCCCCAGGGACACGTCGCAAGCTGCTaGCCCCGGCGGCCGAAGCCAGTCCTGCGTGGGATA +
Preference number: 6 (lower is better)
Translates to: AIPPPQGHVASC*PRRPKPVLRGI
Trigger: TATCCCACGCAGGACTGGCTTCGGCCGCCGGGGCCAGCAGCTTGCGACGTGTCCCTGGGGAGGCGGAATCGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS CCA 72 bp GAGAAGGCAAAGCGCCAGCAGTGCCCTCATCGCCACTaGGCTCCCTGGGCGGCCGGGAGCAGGACGCAGCTG +
Preference number: 6 (lower is better)
Translates to: EKAKRQQCPHRH*APWAAGSRTQL
Trigger: CAGCTGCGTCCTGCTCCCGGCCGCCCAGGGAGCCCAGTGGCGATGAGGGCACTGCTGGCGCTTTGCCTTCTC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS CCA 72 bp AAGCGCCAGCAGTGCCCTCATCGCCACTGGGCTCCCTaGGCGGCCGGGAGCAGGACGCAGCTGGAAAGCGAA +
Preference number: 6 (lower is better)
Translates to: KRQQCPHRHWAP*AAGSRTQLESE
Trigger: TTCGCTTTCCAGCTGCGTCCTGCTCCCGGCCGCCCAGGGAGCCCAGTGGCGATGAGGGCACTGCTGGCGCTT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS GCA 72 bp CTCCCCACTCCTCAAGGGAGCCATAGCGCCCGGGGCTaGCAACTCCAGCGCCGCACAGAGTCCCAACCTGTG +
Preference number: 6 (lower is better)
Translates to: LPTPQGSHSARG*QLQRRTESQPV
Trigger: CACAGGTTGGGACTCTGTGCGGCGCTGGAGTTGGCAGCCCCGGGCGCTATGGCTCCCTTGAGGAGTGGGGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS CCA 72 bp GCTGCCAACTCCAGCGCCGCACAGAGTCCCAACCTGTaGCGATCGCCGGGTCCCGAGAGGAGCCGGAGGAAA +
Preference number: 6 (lower is better)
Translates to: AANSSAAQSPNL*RSPGPERSRRK
Trigger: TTTCCTCCGGCTCCTCTCGGGACCCGGCGATCGCCACAGGTTGGGACTCTGTGCGGCGCTGGAGTTGGCAGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS CCA 72 bp CCCTGGCAAAGGAGAACCTGCGGATGGAGCCGCCTGTaGAGCTGGAGCTCGTGGCTGTGCTGGACTGCCGGG +
Preference number: 6 (lower is better)
Translates to: PWQRRTCGWSRL*SWSSWLCWTAG
Trigger: CCCGGCAGTCCAGCACAGCCACGAGCTCCAGCTCCACAGGCGGCTCCATCCGCAGGTTCTCCTTTGCCAGGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS CCA 72 bp TGGCTGTGCTGGACTGCCGGGAGGGTGCCCTGGGGCTaGTGGAGGTCAGGATCATGGGCAGGGTCTCTGTCT +
Preference number: 6 (lower is better)
Translates to: WLCWTAGRVPWG*WRSGSWAGSLS
Trigger: AGACAGAGACCCTGCCCATGATCCTGACCTCCACCAGCCCCAGGGCACCCTCCCGGCAGTCCAGCACAGCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS CCA 72 bp CAAAGGAGAACCTGCGGATGGAGCCGCCTGTGGAGCTaGAGCTCGTGGCTGTGCTGGACTGCCGGGAGGGTG +
Preference number: 6 (lower is better)
Translates to: QRRTCGWSRLWS*SSWLCWTAGRV
Trigger: CACCCTCCCGGCAGTCCAGCACAGCCACGAGCTCCAGCTCCACAGGCGGCTCCATCCGCAGGTTCTCCTTTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS CCA 72 bp GAGAAAGGGGACGTAGACAGGCTGCGCAGTGATGCCTaGGTGCTCCAGTTCGCGGCGGTCGTTGGTGCAGCC +
Preference number: 6 (lower is better)
Translates to: EKGDVDRLRSDA*VLQFAAVVGAA
Trigger: GGCTGCACCAACGACCGCCGCGAACTGGAGCACCCAGGCATCACTGCGCAGCCTGTCTACGTCCCCTTTCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS TCA 72 bp GATCATGGGCAGGGTCTCTGTCTGATAGCTGCGGAGTaGGAAGCGGATTGGCTGCTGCGAGGGCTCCTTGGG +
Preference number: 6 (lower is better)
Translates to: DHGQGLCLIAAE*EADWLLRGLLG
Trigger: CCCAAGGAGCCCTCGCAGCAGCCAATCCGCTTCTCACTCCGCAGCTATCAGACAGAGACCCTGCCCATGATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS CAA 72 bp GGGTCTCTGTCTGATAGCTGCGGAGTGAGAAGCGGATaGGCTGCTGCGAGGGCTCCTTGGGTCTCAAACAGG +
Preference number: 6 (lower is better)
Translates to: GSLSDSCGVRSG*AAARAPWVSNR
Trigger: CCTGTTTGAGACCCAAGGAGCCCTCGCAGCAGCCAATCCGCTTCTCACTCCGCAGCTATCAGACAGAGACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000319234.5
CDS CAA 90 bp TCATGGGCAGGGTCTCTGTCTGATAGCTGCGGAGTGAGAAGCGGATaGGCTGCTGCGAGGGCTCCTTGGGTCTCAAACAGGTGCAACAAT +
Preference number: 6 (lower is better)
Translates to: SWAGSLSDSCGVRSG*AAARAPWVSNRCNN
Trigger: ATTGTTGCACCTGTTTGAGACCCAAGGAGCCCTCGCAGCAGCCAATCCGCTTCTCACTCCGCAGCTATCAGACAGAGACCCTGCCCATGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000319234.5