Pregenerated sensors for SH3BGRL (Homo sapiens)
Ensembl gene IDs: ENSG00000131171Ensembl transcript IDs: ENST00000373212.6, ENST00000463546.5, ENST00000474113.1, ENST00000481106.5
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GTAGAGCTGCAGATACACTTAAGTTGCCATAGTAATGGCAGAAGGAGGGAAGGGGTATACAGGATGGCTTaGCAGGTAACAACACTATTT | + |
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Preference number: 2 (lower is better) Translates to: VELQIHLSCHSNGRRREGVYRMA*QVTTLF Trigger: AAATAGTGTTGTTACCTGCCAAGCCATCCTGTATAC...CCCTTCCCTCCTTCTGCCATTACTATGGCAACTTAAGTGTATCTGCAGCTCTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| 3UTR-3UTR CAA 90 bp | GTAGAGCTGCAGATACACTTAAGTTGCCATAGTAATGGCAGAAGGAGGGAAGGGTGTATACAGGATGGCTaGGCAGGTAACAACACTATT | + |
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Preference number: 3 (lower is better) Translates to: VELQIHLSCHSNGRRREGCIQDG*AGNNTI Trigger: AATAGTGTTGTTACCTGCCAAGCCATCCTGTATACA...CCCTTCCCTCCTTCTGCCATTACTATGGCAACTTAAGTGTATCTGCAGCTCTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| 3UTR TCA 72 bp | AATGCCATTTTAAGCTTACTTGGCATCCCACTTTCATaGTATACATATGCATATTTCACTGAGGCAAGGAAC | + |
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Preference number: 3 (lower is better) Translates to: NAILSLLGIPLS*YTYAYFTEARN Trigger: GTTCCTTGCCTCAGTGAAATATGCATATGTATATCATGAAAGTGGGATGCCAAGTAAGCTTAAAATGGCATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| 3UTR GCA 72 bp | GCGTGTAAAAGGATATCTATTCTGATCACTGAAATGTaGAATGAAAGGCTACATTTAGAAGCTCAGAAAATC | + |
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Preference number: 3 (lower is better) Translates to: ACKRISILITEM*NERLHLEAQKI Trigger: GATTTTCTGAGCTTCTAAATGTAGCCTTTCATTGCACATTTCAGTGATCAGAATAGATATCCTTTTACACGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR CCA 90 bp | GTAGAGCTGCAGATACACTTAAGTTGCCATAGTAATGGCAGAAGGAGGGAAGGGGCGGCTGCGGTTGTTTaGGTCCTGAAAAGGGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: VELQIHLSCHSNGRRREGAAAVV*VLKRAV Trigger: CACAGCCCTTTTCAGGACCCAAACAACCGCAGCCGC...CCCTTCCCTCCTTCTGCCATTACTATGGCAACTTAAGTGTATCTGCAGCTCTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR TCA 90 bp | GTAGAGCTGCAGATACACTTAAGTTGCCATAGTAATGGCAGAAGGAGGGAAGGGCACTTCTGCTTCCTTTaGACCAGGTGGGGCTGTCAA | + |
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Preference number: 4 (lower is better) Translates to: VELQIHLSCHSNGRRREGHFCFL*TRWGCQ Trigger: TTGACAGCCCCACCTGGTTCAAAGGAAGCAGAAGTG...CCCTTCCCTCCTTCTGCCATTACTATGGCAACTTAAGTGTATCTGCAGCTCTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR CCA 90 bp | GTAGAGCTGCAGATACACTTAAGTTGCCATAGTAATGGCAGAAGGAGGGAAGGGATTGAAAATCTGAGGTaGCAGGGGGTAACCTGTGGC | + |
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Preference number: 4 (lower is better) Translates to: VELQIHLSCHSNGRRREGIENLR*QGVTCG Trigger: GCCACAGGTTACCCCCTGCCACCTCAGATTTTCAAT...CCCTTCCCTCCTTCTGCCATTACTATGGCAACTTAAGTGTATCTGCAGCTCTAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR TCA 90 bp | AGTCTAATCTCTTTGCTAGAGAATGCCATTTTAAGCTTACTTGGCATCCCACTTCGGTTGTTTGGGTCCTaGAAAGGGCTGTGGAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: SLISLLENAILSLLGIPLRLFGS*KGLWSS Trigger: GCTGCTCCACAGCCCTTTTCAGGACCCAAACAACCG...AAGTGGGATGCCAAGTAAGCTTAAAATGGCATTCTCTAGCAAAGAGATTAGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR CCA 90 bp | GCTCAGAAAATCTGTGGTTCAATATGTAGAAGTTTCATCTACAAAAGAATGGGACACGGATCACCATCCTaGGAACAGCGGCTGCGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: AQKICGSICRSFIYKRMGHGSPS*EQRLRL Trigger: CAACCGCAGCCGCTGTTCCCAGGATGGTGATCCGTG...TCCCATTCTTTTGTAGATGAAACTTCTACATATTGAACCACAGATTTTCTGAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR GCA 90 bp | ATTCTGATCACTGAAATGTGCAATGAAAGGCTACATTTAGAAGCTCAGAAAATCGGGCTGTGGAGCAGCTaGAGCAATGGCTGGAATCCA | + |
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Preference number: 4 (lower is better) Translates to: ILITEMCNERLHLEAQKIGLWSS*SNGWNP Trigger: TGGATTCCAGCCATTGCTGCAGCTGCTCCACAGCCC...GATTTTCTGAGCTTCTAAATGTAGCCTTTCATTGCACATTTCAGTGATCAGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR GCA 90 bp | TCTATTCTGATCACTGAAATGTGCAATGAAAGGCTACATTTAGAAGCTCAGAAACCTGGGAACAGCGGCTaGGGTTGTTTGGGTCCTGAA | + |
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Preference number: 4 (lower is better) Translates to: SILITEMCNERLHLEAQKPGNSG*GCLGPE Trigger: TTCAGGACCCAAACAACCGCAGCCGCTGTTCCCAGG...TTTCTGAGCTTCTAAATGTAGCCTTTCATTGCACATTTCAGTGATCAGAATAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR TCA 90 bp | GTAGAGCTGCAGATACACTTAAGTTGCCATAGTAATGGCAGAAGGAGGGAAGGGGGCATCCCACTTTCATaGTATACATATGCATATTTC | + |
|
Preference number: 4 (lower is better) Translates to: VELQIHLSCHSNGRRREGGIPLS*YTYAYF Trigger: GAAATATGCATATGTATATCATGAAAGTGGGATGCC...CCCTTCCCTCCTTCTGCCATTACTATGGCAACTTAAGTGTATCTGCAGCTCTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR CCA 90 bp | GCTCAGAAAATCTGTGGTTCAATATGTAGAAGTTTCATCTACAAAAGAATGGGAGCAGGGGGTAACCTGTaGCTGGTCGACTATTTTCAG | + |
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Preference number: 4 (lower is better) Translates to: AQKICGSICRSFIYKRMGAGGNL*LVDYFQ Trigger: CTGAAAATAGTCGACCAGCCACAGGTTACCCCCTGC...TCCCATTCTTTTGTAGATGAAACTTCTACATATTGAACCACAGATTTTCTGAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR CCA 90 bp | GTAGAGCTGCAGATACACTTAAGTTGCCATAGTAATGGCAGAAGGAGGGAAGGGCATTTTAAGCTTACTTaGCATCCCACTTTCATGATA | + |
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Preference number: 4 (lower is better) Translates to: VELQIHLSCHSNGRRREGHFKLT*HPTFMI Trigger: TATCATGAAAGTGGGATGCCAAGTAAGCTTAAAATG...CCCTTCCCTCCTTCTGCCATTACTATGGCAACTTAAGTGTATCTGCAGCTCTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR GCA 90 bp | AGTCTAATCTCTTTGCTAGAGAATGCCATTTTAAGCTTACTTGGCATCCCACTTTCATGCTTGCTGCTTTaGTTGCACTTCTGCTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: SLISLLENAILSLLGIPLSCLLL*LHFCFL Trigger: AAGGAAGCAGAAGTGCAAGCAAAGCAGCAAGCATGA...AAGTGGGATGCCAAGTAAGCTTAAAATGGCATTCTCTAGCAAAGAGATTAGACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR CCA 90 bp | TCTATTCTGATCACTGAAATGTGCAATGAAAGGCTACATTTAGAAGCTCAGAAAGGGGTAACCTGTGGCTaGTCGACTATTTTCAGGTAC | + |
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Preference number: 4 (lower is better) Translates to: SILITEMCNERLHLEAQKGVTCG*STIFRY Trigger: GTACCTGAAAATAGTCGACCAGCCACAGGTTACCCC...TTTCTGAGCTTCTAAATGTAGCCTTTCATTGCACATTTCAGTGATCAGAATAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR TCA 90 bp | ATTCTGATCACTGAAATGTGCAATGAAAGGCTACATTTAGAAGCTCAGAAAATCGATACTGGCTTTCATTaGAAATCTGAGGTGGCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: ILITEMCNERLHLEAQKIDTGFH*KSEVAG Trigger: CCCTGCCACCTCAGATTTTCAATGAAAGCCAGTATC...GATTTTCTGAGCTTCTAAATGTAGCCTTTCATTGCACATTTCAGTGATCAGAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR GCA 90 bp | AGTCTAATCTCTTTGCTAGAGAATGCCATTTTAAGCTTACTTGGCATCCCACTTCTTAAGGTTCATGCTTaGTGCTTTGCTTGCACTTCT | + |
|
Preference number: 4 (lower is better) Translates to: SLISLLENAILSLLGIPLLKVHA*CFACTS Trigger: AGAAGTGCAAGCAAAGCAGCAAGCATGAACCTTAAG...AAGTGGGATGCCAAGTAAGCTTAAAATGGCATTCTCTAGCAAAGAGATTAGACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR GCA 90 bp | ATTCTGATCACTGAAATGTGCAATGAAAGGCTACATTTAGAAGCTCAGAAAATCGCTTGCTGCTTTGCTTaGACTTCTGCTTCCTTTGAA | + |
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Preference number: 4 (lower is better) Translates to: ILITEMCNERLHLEAQKIACCFA*TSASFE Trigger: TTCAAAGGAAGCAGAAGTGCAAGCAAAGCAGCAAGC...GATTTTCTGAGCTTCTAAATGTAGCCTTTCATTGCACATTTCAGTGATCAGAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR CCA 90 bp | GCTCAGAAAATCTGTGGTTCAATATGTAGAAGTTTCATCTACAAAAGAATGGGAAAGGGAAACCAATCTTaGGAAATGATCGCCAACCTG | + |
|
Preference number: 4 (lower is better) Translates to: AQKICGSICRSFIYKRMGKGNQS*EMIANL Trigger: CAGGTTGGCGATCATTTCCCAAGATTGGTTTCCCTT...TCCCATTCTTTTGTAGATGAAACTTCTACATATTGAACCACAGATTTTCTGAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR TCA 90 bp | AGTCTAATCTCTTTGCTAGAGAATGCCATTTTAAGCTTACTTGGCATCCCACTTAAGGAACTTGTCCACTaGATGAATCTATTGCTTTTG | + |
|
Preference number: 4 (lower is better) Translates to: SLISLLENAILSLLGIPLKELVH*MNLLLL Trigger: CAAAAGCAATAGATTCATTCAGTGGACAAGTTCCTT...AAGTGGGATGCCAAGTAAGCTTAAAATGGCATTCTCTAGCAAAGAGATTAGACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR GCA 90 bp | TCTATTCTGATCACTGAAATGTGCAATGAAAGGCTACATTTAGAAGCTCAGAAAAGAGCCAGAGGAAGATaGAATATATACACGGATCAC | + |
|
Preference number: 4 (lower is better) Translates to: SILITEMCNERLHLEAQKRARGR*NIYTDH Trigger: GTGATCCGTGTATATATTGCATCTTCCTCTGGCTCT...TTTCTGAGCTTCTAAATGTAGCCTTTCATTGCACATTTCAGTGATCAGAATAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR TCA 90 bp | TCTATTCTGATCACTGAAATGTGCAATGAAAGGCTACATTTAGAAGCTCAGAAAAACTTGTCCACTGAATaGATCTATTGCTTTTGTGCG | + |
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Preference number: 4 (lower is better) Translates to: SILITEMCNERLHLEAQKNLSTE*IYCFCA Trigger: CGCACAAAAGCAATAGATTCATTCAGTGGACAAGTT...TTTCTGAGCTTCTAAATGTAGCCTTTCATTGCACATTTCAGTGATCAGAATAGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR TCA 90 bp | GCTCAGAAAATCTGTGGTTCAATATGTAGAAGTTTCATCTACAAAAGAATGGGAACCAATCTTGGGAAATaGTCGCCAACCTGTTTTATA | + |
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Preference number: 4 (lower is better) Translates to: AQKICGSICRSFIYKRMGTNLGK*SPTCFI Trigger: TATAAAACAGGTTGGCGATCATTTCCCAAGATTGGT...TCCCATTCTTTTGTAGATGAAACTTCTACATATTGAACCACAGATTTTCTGAGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR GCA 90 bp | TCTATTCTGATCACTGAAATGTGCAATGAAAGGCTACATTTAGAAGCTCAGAAAATGCTTAAAGCACAGTaGTTAAGGTTCATGCTTGCT | + |
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Preference number: 4 (lower is better) Translates to: SILITEMCNERLHLEAQKMLKAQ*LRFMLA Trigger: AGCAAGCATGAACCTTAAGCACTGTGCTTTAAGCAT...TTTCTGAGCTTCTAAATGTAGCCTTTCATTGCACATTTCAGTGATCAGAATAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR GCA 90 bp | AGTCTAATCTCTTTGCTAGAGAATGCCATTTTAAGCTTACTTGGCATCCCACTTCTGATCACTGAAATGTaGAATGAAAGGCTACATTTA | + |
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Preference number: 4 (lower is better) Translates to: SLISLLENAILSLLGIPLLITEM*NERLHL Trigger: TAAATGTAGCCTTTCATTGCACATTTCAGTGATCAG...AAGTGGGATGCCAAGTAAGCTTAAAATGGCATTCTCTAGCAAAGAGATTAGACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR CCA 90 bp | GCTCAGAAAATCTGTGGTTCAATATGTAGAAGTTTCATCTACAAAAGAATGGGAGTATACAGGATGGCTTaGCAGGTAACAACACTATTT | + |
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Preference number: 4 (lower is better) Translates to: AQKICGSICRSFIYKRMGVYRMA*QVTTLF Trigger: AAATAGTGTTGTTACCTGCCAAGCCATCCTGTATAC...TCCCATTCTTTTGTAGATGAAACTTCTACATATTGAACCACAGATTTTCTGAGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR GCA 90 bp | ATTCTGATCACTGAAATGTGCAATGAAAGGCTACATTTAGAAGCTCAGAAAATCCTCTTTGCTAGAGAATaGCATTTTAAGCTTACTTGG | + |
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Preference number: 4 (lower is better) Translates to: ILITEMCNERLHLEAQKILFARE*HFKLTW Trigger: CCAAGTAAGCTTAAAATGGCATTCTCTAGCAAAGAG...GATTTTCTGAGCTTCTAAATGTAGCCTTTCATTGCACATTTCAGTGATCAGAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR CCA 90 bp | TCTATTCTGATCACTGAAATGTGCAATGAAAGGCTACATTTAGAAGCTCAGAAACTGAGGCAAGGAACTTaGATATATCATTCCATCATA | + |
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Preference number: 4 (lower is better) Translates to: SILITEMCNERLHLEAQKLRQGT*IYHSII Trigger: TATGATGGAATGATATATCCAAGTTCCTTGCCTCAG...TTTCTGAGCTTCTAAATGTAGCCTTTCATTGCACATTTCAGTGATCAGAATAGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR GCA 90 bp | GCTCAGAAAATCTGTGGTTCAATATGTAGAAGTTTCATCTACAAAAGAATGGGAGATACTTCTACTTTTTaGTGGAATAGAGGCATAGAA | + |
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Preference number: 4 (lower is better) Translates to: AQKICGSICRSFIYKRMGDTSTF*WNRGIE Trigger: TTCTATGCCTCTATTCCAGCAAAAAGTAGAAGTATC...TCCCATTCTTTTGTAGATGAAACTTCTACATATTGAACCACAGATTTTCTGAGC 34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR CAA 90 bp | AGTCTAATCTCTTTGCTAGAGAATGCCATTTTAAGCTTACTTGGCATCCCACTTAGCGGCTGCGGTTGTTaGGGTCCTGAAAAGGGCTGT | + |
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Preference number: 5 (lower is better) Translates to: SLISLLENAILSLLGIPLSGCGC*GPEKGC Trigger: ACAGCCCTTTTCAGGACCCAAACAACCGCAGCCGCT...AAGTGGGATGCCAAGTAAGCTTAAAATGGCATTCTCTAGCAAAGAGATTAGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR CAA 90 bp | GTAGAGCTGCAGATACACTTAAGTTGCCATAGTAATGGCAGAAGGAGGGAAGGGGAAACCAAGCACATCTaGTTGTTTCTTCTTAATCGC | + |
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Preference number: 5 (lower is better) Translates to: VELQIHLSCHSNGRRREGETKHI*LFLLNR Trigger: GCGATTAAGAAGAAACAACAAGATGTGCTTGGTTTC...CCCTTCCCTCCTTCTGCCATTACTATGGCAACTTAAGTGTATCTGCAGCTCTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR CAA 90 bp | GTAGAGCTGCAGATACACTTAAGTTGCCATAGTAATGGCAGAAGGAGGGAAGGGTTCCGATTCTCTTCATaGGCTGCAATATCTTTTTCT | + |
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Preference number: 5 (lower is better) Translates to: VELQIHLSCHSNGRRREGFRFSS*AAISFS Trigger: AGAAAAAGATATTGCAGCCAATGAAGAGAATCGGAA...CCCTTCCCTCCTTCTGCCATTACTATGGCAACTTAAGTGTATCTGCAGCTCTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR CAA 90 bp | TCTATTCTGATCACTGAAATGTGCAATGAAAGGCTACATTTAGAAGCTCAGAAAGCACTTCTGCTTCCTTaGAACCAGGTGGGGCTGTCA | + |
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Preference number: 5 (lower is better) Translates to: SILITEMCNERLHLEAQKALLLP*NQVGLS Trigger: TGACAGCCCCACCTGGTTCAAAGGAAGCAGAAGTGC...TTTCTGAGCTTCTAAATGTAGCCTTTCATTGCACATTTCAGTGATCAGAATAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS GCA 90 bp | TATAAAAGCAATGGAGACTCATTTTTCAGGATGCTTAAAGCACAGTaGTTAAGGTTCATGCTTGCTGCTTTGCTTGCACTTCTGCTTCCT | + |
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Preference number: 5 (lower is better) Translates to: YKSNGDSFFRMLKAQ*LRFMLAALLALLLP Trigger: AGGAAGCAGAAGTGCAAGCAAAGCAGCAAGCATGAACCTTAAGCACTGTGCTTTAAGCATCCTGAAAAATGAGTCTCCATTGCTTTTATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000373212.6 ENST00000463546.5 ENST00000474113.1 ENST00000481106.5 |
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| CDS-3UTR CAA 90 bp | TCTATTCTGATCACTGAAATGTGCAATGAAAGGCTACATTTAGAAGCTCAGAAATTCATGCTTGCTGCTTaGCTTGCACTTCTGCTTCCT | + |
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Preference number: 5 (lower is better) Translates to: SILITEMCNERLHLEAQKFMLAA*LALLLP Trigger: AGGAAGCAGAAGTGCAAGCAAAGCAGCAAGCATGAA...TTTCTGAGCTTCTAAATGTAGCCTTTCATTGCACATTTCAGTGATCAGAATAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR CAA 90 bp | AGTCTAATCTCTTTGCTAGAGAATGCCATTTTAAGCTTACTTGGCATCCCACTTTGTATACAGGATGGCTaGGCAGGTAACAACACTATT | + |
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Preference number: 5 (lower is better) Translates to: SLISLLENAILSLLGIPLCIQDG*AGNNTI Trigger: AATAGTGTTGTTACCTGCCAAGCCATCCTGTATACA...AAGTGGGATGCCAAGTAAGCTTAAAATGGCATTCTCTAGCAAAGAGATTAGACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR CAA 90 bp | TCTATTCTGATCACTGAAATGTGCAATGAAAGGCTACATTTAGAAGCTCAGAAACAAGGGAAACCAATCTaGGGAAATGATCGCCAACCT | + |
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Preference number: 5 (lower is better) Translates to: SILITEMCNERLHLEAQKQGKPI*GNDRQP Trigger: AGGTTGGCGATCATTTCCCAAGATTGGTTTCCCTTG...TTTCTGAGCTTCTAAATGTAGCCTTTCATTGCACATTTCAGTGATCAGAATAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR CAA 90 bp | AGTCTAATCTCTTTGCTAGAGAATGCCATTTTAAGCTTACTTGGCATCCCACTTTCTTCAAATCCTATTTaGTTGGCTTCTAGGAAACCA | + |
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Preference number: 5 (lower is better) Translates to: SLISLLENAILSLLGIPLSSNPI*LASRKP Trigger: TGGTTTCCTAGAAGCCAACAAAATAGGATTTGAAGA...AAGTGGGATGCCAAGTAAGCTTAAAATGGCATTCTCTAGCAAAGAGATTAGACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR CAA 90 bp | AGTCTAATCTCTTTGCTAGAGAATGCCATTTTAAGCTTACTTGGCATCCCACTTAGCATAGCATCAAGTTaGAATCTCATGAAACAAAGG | + |
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Preference number: 5 (lower is better) Translates to: SLISLLENAILSLLGIPLSIASS*NLMKQR Trigger: CCTTTGTTTCATGAGATTCAAACTTGATGCTATGCT...AAGTGGGATGCCAAGTAAGCTTAAAATGGCATTCTCTAGCAAAGAGATTAGACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR CAA 90 bp | TCTATTCTGATCACTGAAATGTGCAATGAAAGGCTACATTTAGAAGCTCAGAAAACCAAGCACATCTTGTaGTTTCTTCTTAATCGCTGT | + |
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Preference number: 5 (lower is better) Translates to: SILITEMCNERLHLEAQKTKHIL*FLLNRC Trigger: ACAGCGATTAAGAAGAAACAACAAGATGTGCTTGGT...TTTCTGAGCTTCTAAATGTAGCCTTTCATTGCACATTTCAGTGATCAGAATAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR CAA 90 bp | TCTATTCTGATCACTGAAATGTGCAATGAAAGGCTACATTTAGAAGCTCAGAAATCAAATCCTATTTTGTaGGCTTCTAGGAAACCAAGC | + |
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Preference number: 5 (lower is better) Translates to: SILITEMCNERLHLEAQKSNPIL*ASRKPS Trigger: GCTTGGTTTCCTAGAAGCCAACAAAATAGGATTTGA...TTTCTGAGCTTCTAAATGTAGCCTTTCATTGCACATTTCAGTGATCAGAATAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS-3UTR CAA 90 bp | TCTATTCTGATCACTGAAATGTGCAATGAAAGGCTACATTTAGAAGCTCAGAAAACTGAGGCAAGGAACTaGGATATATCATTCCATCAT | + |
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Preference number: 5 (lower is better) Translates to: SILITEMCNERLHLEAQKTEARN*DISFHH Trigger: ATGATGGAATGATATATCCAAGTTCCTTGCCTCAGT...TTTCTGAGCTTCTAAATGTAGCCTTTCATTGCACATTTCAGTGATCAGAATAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373212.6 |
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| CDS GCA 72 bp | AATATATACACGGATCACCATCCTGGGAACAGCGGCTaGGGTTGTTTGGGTCCTGAAAAGGGCTGTGGAGCA | + |
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Preference number: 6 (lower is better) Translates to: NIYTDHHPGNSG*GCLGPEKGCGA Trigger: TGCTCCACAGCCCTTTTCAGGACCCAAACAACCGCAGCCGCTGTTCCCAGGATGGTGATCCGTGTATATATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000373212.6 ENST00000481106.5 |
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| CDS CAA 72 bp | TTCATGCTTGCTGCTTTGCTTGCACTTCTGCTTCCTTaGAACCAGGTGGGGCTGTCAAGCCTAAGAAGGCAT | + |
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Preference number: 6 (lower is better) Translates to: FMLAALLALLLP*NQVGLSSLRRH Trigger: ATGCCTTCTTAGGCTTGACAGCCCCACCTGGTTCAAAGGAAGCAGAAGTGCAAGCAAAGCAGCAAGCATGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000373212.6 ENST00000463546.5 ENST00000474113.1 ENST00000481106.5 |
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| CDS CAA 90 bp | TGCTTAAGGTTCATGCTTGCTGCTTTGCTTGCACTTCTGCTTCCTTaGAACCAGGTGGGGCTGTCAAGCCTAAGAAGGCATACACTGCAT | + |
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Preference number: 6 (lower is better) Translates to: CLRFMLAALLALLLP*NQVGLSSLRRHTLH Trigger: ATGCAGTGTATGCCTTCTTAGGCTTGACAGCCCCACCTGGTTCAAAGGAAGCAGAAGTGCAAGCAAAGCAGCAAGCATGAACCTTAAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000373212.6 ENST00000463546.5 ENST00000474113.1 ENST00000481106.5 |
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| CDS CAA 72 bp | AAAGACCGTATAGCACCATCTCCCATCTCCCAAAACTaGGTAGCTTTCGTTTTCCTTCAAAGCAGAAATGTG | + |
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Preference number: 6 (lower is better) Translates to: KDRIAPSPISQN*VAFVFLQSRNV Trigger: CACATTTCTGCTTTGAAGGAAAACGAAAGCTACCAAGTTTTGGGAGATGGGAGATGGTGCTATACGGTCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000481106.5 |
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| CDS CAA 72 bp | TCTTGTTGTTTCTTCTTAATCAGTGTGCGATTTTACTaGACTTCACGTAACCCTAAAGACCGTATAGCACCA | + |
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Preference number: 6 (lower is better) Translates to: SCCFFLISVRFY*TSRNPKDRIAP Trigger: TGGTGCTATACGGTCTTTAGGGTTACGTGAAGTCAAGTAAAATCGCACACTGATTAAGAAGAAACAACAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000481106.5 |
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| CDS CAA 90 bp | CGATTCTCTTCATTGGCTGCAATATCTTTTTCTTCAAATCCTATTTaGTTGGCTTCTAGGAAACCAAGCACATCTTGTTGTTTCTTCTTA | + |
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Preference number: 6 (lower is better) Translates to: RFSSLAAISFSSNPI*LASRKPSTSCCFFL Trigger: TAAGAAGAAACAACAAGATGTGCTTGGTTTCCTAGAAGCCAACAAAATAGGATTTGAAGAAAAAGATATTGCAGCCAATGAAGAGAATCG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000373212.6 ENST00000463546.5 ENST00000474113.1 ENST00000481106.5 |
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