RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SGMS2 (Homo sapiens)

Ensembl gene IDs: ENSG00000164023

Ensembl transcript IDs: ENST00000359079.8, ENST00000394684.8, ENST00000394686.3, ENST00000503862.5, ENST00000506462.5, ENST00000515332.5

Found 245 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GATTCCCCCACCCTTATTTGCAAACCATGGACTTCCTCAACTCGATaGCAGAGCTATACGACACATGCGTGTAAAGACATGGCAGCGGCA +
Preference number: 1 (lower is better)
Translates to: DSPTLICKPWTSSTR*QSYTTHACKDMAAA
Trigger: TGCCGCTGCCATGTCTTTACACGCATGTGTCGTATAGCTCTGTCATCGAGTTGAGGAAGTCCATGGTTTGCAAATAAGGGTGGGGGAATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR-3UTR GCA 90 bp CTCAACGCTCACTCTCAAAACAGCCTTCCTGCCACAGCAAAACTTGTTTCCCAAGGCCTCTCCACCCTCTaGCCCAGTGTTGATAACTTT +
Preference number: 2 (lower is better)
Translates to: LNAHSQNSLPATAKLVSQGLSTL*PSVDNF
Trigger: AAAGTTATCAACACTGGGGCAGAGGGTGGAGAGGCC...TTGGGAAACAAGTTTTGCTGTGGCAGGAAGGCTGTTTTGAGAGTGAGCGTTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR-3UTR CCA 90 bp GCACCAAAGGATGTTGACCCTTCTGAACGATTTGCATTGTGTTTTTCTCAAGCATCCTTCTACCCGCATTaGCCTCTCCACCCTCTGCCC +
Preference number: 2 (lower is better)
Translates to: APKDVDPSERFALCFSQASFYPH*PLHPLP
Trigger: GGGCAGAGGGTGGAGAGGCCAATGCGGGTAGAAGGA...TGCTTGAGAAAAACACAATGCAAATCGTTCAGAAGGGTCAACATCCTTTGGTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR CAA 90 bp AAATTTCACCTTCAATATAAACATAACTGCCTCCTTCTACCCGCATaGGCCTCTCCACCCTCTGCCCCAGTGTTGATAACTTTGCAACCT +
Preference number: 2 (lower is better)
Translates to: KFHLQYKHNCLLLPA*ASPPSAPVLITLQP
Trigger: AGGTTGCAAAGTTATCAACACTGGGGCAGAGGGTGGAGAGGCCAATGCGGGTAGAAGGAGGCAGTTATGTTTATATTGAAGGTGAAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR-3UTR TCA 90 bp GAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCGGGGCTTGTCACCAATaGATGAAGAGCTGCAAGAGA +
Preference number: 2 (lower is better)
Translates to: ERRNMFFGTSLTSSLVKSGACHQ*MKSCKR
Trigger: TCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCC...GGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
3UTR-3UTR TCA 90 bp CATAAAGTATATTGCCACAAGGGGGCACTGGTAATACAGGAAATAACCCTAATGCCCGAACTTTCCCCGTaGCAGGGTAGAAACAAAATT +
Preference number: 2 (lower is better)
Translates to: HKVYCHKGALVIQEITLMPELSP*QGRNKI
Trigger: AATTTTGTTTCTACCCTGTCACGGGGAAAGTTCGGG...CATTAGGGTTATTTCCTGTATTACCAGTGCCCCCTTGTGGCAATATACTTTATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR-3UTR CCA 90 bp CATAAAGTATATTGCCACAAGGGGGCACTGGTAATACAGGAAATAACCCTAATGATGCGTGTAAAGACATaGCAGCGGCAATGTCCACAT +
Preference number: 2 (lower is better)
Translates to: HKVYCHKGALVIQEITLMMRVKT*QRQCPH
Trigger: ATGTGGACATTGCCGCTGCCATGTCTTTACACGCAT...CATTAGGGTTATTTCCTGTATTACCAGTGCCCCCTTGTGGCAATATACTTTATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR CAA 90 bp AATTTGACCAAATACATTTCTGTGCTCCAATTAGGAGCCCTAAAATaGATCTCACACCAGGGCCTGACCTGGAAAGAAAACAGGCTCATT +
Preference number: 2 (lower is better)
Translates to: NLTKYISVLQLGALK*ISHQGLTWKENRLI
Trigger: AATGAGCCTGTTTTCTTTCCAGGTCAGGCCCTGGTGTGAGATCAATTTTAGGGCTCCTAATTGGAGCACAGAAATGTATTTGGTCAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR-3UTR TCA 90 bp CAAGATGCCAGTAAATTAAGTAACAAATTCACAATTAGTTCAAGTGGACTCAGGATTCCCCAAGTGGTGTaGACCTCAGTTGACACACAC +
Preference number: 2 (lower is better)
Translates to: QDASKLSNKFTISSSGLRIPQVV*TSVDTH
Trigger: GTGTGTGTCAACTGAGGTTCACACCACTTGGGGAAT...CCTGAGTCCACTTGAACTAATTGTGAATTTGTTACTTAATTTACTGGCATCTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR-3UTR CCA 90 bp GTTTGCATTCCAAGTCATAAAGTATATTGCCACAAGGGGGCACTGGTAATACAGCCTGCCAAGGATGTTTaGGGTTTTAATTCTTGTTTA +
Preference number: 2 (lower is better)
Translates to: VCIPSHKVYCHKGALVIQPAKDV*GFNSCL
Trigger: TAAACAAGAATTAAAACCCCAAACATCCTTGGCAGG...CTGTATTACCAGTGCCCCCTTGTGGCAATATACTTTATGACTTGGAATGCAAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR-3UTR TCA 90 bp CAAGATGCCAGTAAATTAAGTAACAAATTCACAATTAGTTCAAGTGGACTCAGGACTTCCTCAACTCGATaGCAGAGCTATACGACACAT +
Preference number: 2 (lower is better)
Translates to: QDASKLSNKFTISSSGLRTSSTR*QSYTTH
Trigger: ATGTGTCGTATAGCTCTGTCATCGAGTTGAGGAAGT...CCTGAGTCCACTTGAACTAATTGTGAATTTGTTACTTAATTTACTGGCATCTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR GCA 72 bp ACACACGTGTTTTCAGCCTGTGCTAGAAGAGTTGACTaGCCTGGGGCACCAGATCCAAATTTACAGGGCAGA +
Preference number: 3 (lower is better)
Translates to: THVFSACARRVD*PGAPDPNLQGR
Trigger: TCTGCCCTGTAAATTTGGATCTGGTGCCCCAGGGCAGTCAACTCTTCTAGCACAGGCTGAAAACACGTGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR CCA 72 bp GATGACAGAGCTATACGACACATGCGTGTAAAGACATaGCAGCGGCAATGTCCACATTGGCATCACAGGTGT +
Preference number: 3 (lower is better)
Translates to: DDRAIRHMRVKT*QRQCPHWHHRC
Trigger: ACACCTGTGATGCCAATGTGGACATTGCCGCTGCCATGTCTTTACACGCATGTGTCGTATAGCTCTGTCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR-3UTR CAA 90 bp GTTTGCATTCCAAGTCATAAAGTATATTGCCACAAGGGGGCACTGGTAATACAGGTGATATGTAGCGCATaGGGTGGCAGCAGCAGTGTG +
Preference number: 3 (lower is better)
Translates to: VCIPSHKVYCHKGALVIQVICSA*GGSSSV
Trigger: CACACTGCTGCTGCCACCCAATGCGCTACATATCAC...CTGTATTACCAGTGCCCCCTTGTGGCAATATACTTTATGACTTGGAATGCAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR TCA 72 bp ACCCTTATTTGCAAACCATGGACTTCCTCAACTCGATaGCAGAGCTATACGACACATGCGTGTAAAGACATG +
Preference number: 3 (lower is better)
Translates to: TLICKPWTSSTR*QSYTTHACKDM
Trigger: CATGTCTTTACACGCATGTGTCGTATAGCTCTGTCATCGAGTTGAGGAAGTCCATGGTTTGCAAATAAGGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR-3UTR CAA 90 bp GTTTGCATTCCAAGTCATAAAGTATATTGCCACAAGGGGGCACTGGTAATACAGACCCTTCTGAACGATTaGCATTGTGTTTTTCTCAAG +
Preference number: 3 (lower is better)
Translates to: VCIPSHKVYCHKGALVIQTLLND*HCVFLK
Trigger: CTTGAGAAAAACACAATGCAAATCGTTCAGAAGGGT...CTGTATTACCAGTGCCCCCTTGTGGCAATATACTTTATGACTTGGAATGCAAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR-3UTR CAA 90 bp CAAGATGCCAGTAAATTAAGTAACAAATTCACAATTAGTTCAAGTGGACTCAGGTGGTGTGAACCTCAGTaGACACACACGTGTTTTCAG +
Preference number: 3 (lower is better)
Translates to: QDASKLSNKFTISSSGLRWCEPQ*THTCFQ
Trigger: CTGAAAACACGTGTGTGTCAACTGAGGTTCACACCA...CCTGAGTCCACTTGAACTAATTGTGAATTTGTTACTTAATTTACTGGCATCTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR GCA 72 bp AAAAGTGGTGTTTGCATTCCAAGTCATAAAGTATATTaGCACAAGGGGGCACTGGTAATACAGGAAATAACC +
Preference number: 3 (lower is better)
Translates to: KSGVCIPSHKVY*HKGALVIQEIT
Trigger: GGTTATTTCCTGTATTACCAGTGCCCCCTTGTGGCAATATACTTTATGACTTGGAATGCAAACACCACTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR TCA 72 bp ATGGATACAAGGTTAGAATTACAAGTGCCTATAATCTaGGCACATTTTACCTTTGGGAAAGGTTTAAAATGC +
Preference number: 3 (lower is better)
Translates to: MDTRLELQVPII*AHFTFGKGLKC
Trigger: GCATTTTAAACCTTTCCCAAAGGTAAAATGTGCTCAGATTATAGGCACTTGTAATTCTAACCTTGTATCCAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR GCA 72 bp AAATTCACAATTAGTTCAAGTGGACTCAGGAAAGGATaGTTTATTTTCAGATCTAGTGGACAAGCTCAAAAA +
Preference number: 3 (lower is better)
Translates to: KFTISSSGLRKG*FIFRSSGQAQK
Trigger: TTTTTGAGCTTGTCCACTAGATCTGAAAATAAAGCATCCTTTCCTGAGTCCACTTGAACTAATTGTGAATTT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR CCA 72 bp TTATCTTTGGGTAACATTGACATGATTTTCAGTGTTTaGGTGTTGAAGTCAAGAGCACTTCTTAATAGAAGA +
Preference number: 3 (lower is better)
Translates to: LSLGNIDMIFSV*VLKSRALLNRR
Trigger: TCTTCTATTAAGAAGTGCTCTTGACTTCAACACCCAAACACTGAAAATCATGTCAATGTTACCCAAAGATAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CCA 90 bp GGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAGCAGGCAGGGCAGTTTaGCTCCCGGCCGAAAGGCTG +
Preference number: 4 (lower is better)
Translates to: GTSLTSSLVKSRGGGLSPAGRAV*LPAERL
Trigger: CAGCCTTTCGGCCGGGAGCCAAACTGCCCTGCCTGC...TGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CCA 90 bp GTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATCCGTTCCTGCTGCCGTaGCTCTCCTGGCGCAGAGTG +
Preference number: 4 (lower is better)
Translates to: VKSRGGGLSPMNEELQENPFLLP*LSWRRV
Trigger: CACTCTGCGCCAGGAGAGCCACGGCAGCAGGAACGG...ATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR GCA 90 bp TTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCAAGTGCCCGTTCCTGCTaGCGTGGCTCTCCTGGCGCA +
Preference number: 4 (lower is better)
Translates to: FGTSLTSSLVKSRGGGLSSARSC*RGSPGA
Trigger: TGCGCCAGGAGAGCCACGGCAGCAGGAACGGGCACT...TGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR GCA 90 bp GGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCACCGGGTACTTTTTGGTaGCTTTTCGCAGCCCACTGG +
Preference number: 4 (lower is better)
Translates to: GTSLTSSLVKSRGGGLSPPGTFW*LFAAHW
Trigger: CCAGTGGGCTGCGAAAAGGCACCAAAAAGTACCCGG...TGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR GCA 90 bp GGCTCAAGGAAAACACCAGTGTTAGGAGAGCAAAATCCAGGCTTCTGTGTCAGATATAGGGCCACAGGATaGAGCTCCGTCGGCCCGGTG +
Preference number: 4 (lower is better)
Translates to: GSRKTPVLGEQNPGFCVRYRATG*SSVGPV
Trigger: CACCGGGCCGACGGAGCTGCATCCTGTGGCCCTATA...TCTGACACAGAAGCCTGGATTTTGCTCTCCTAACACTGGTGTTTTCCTTGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CCA 90 bp CCAGGGCCTGACCTGGAAAGAAAACAGGCTCATTCCCCAAGTGGTGTGAACCTCAGCAGTGTGCACTCCTaGACTCAACCCGAACTTTCC +
Preference number: 4 (lower is better)
Translates to: PGPDLERKQAHSPSGVNLSSVHS*TQPELS
Trigger: GGAAAGTTCGGGTTGAGTCCAGGAGTGCACACTGCT...GAGGTTCACACCACTTGGGGAATGAGCCTGTTTTCTTTCCAGGTCAGGCCCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CCA 90 bp ACTCCTGGACTCAACCCGAACTTTCCCCGTGACAGGGTAGAAACAAAATTCACCTCCTTCTACCCGCATTaGCCTCTCCACCCTCTGCCC +
Preference number: 4 (lower is better)
Translates to: TPGLNPNFPRDRVETKFTSFYPH*PLHPLP
Trigger: GGGCAGAGGGTGGAGAGGCCAATGCGGGTAGAAGGA...GGTGAATTTTGTTTCTACCCTGTCACGGGGAAAGTTCGGGTTGAGTCCAGGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR TCA 90 bp AAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATGTAGTCAGCGTAACCGTGTaGCCGCTGAAGAGGAAGTCT +
Preference number: 4 (lower is better)
Translates to: KSRGGGLSPMNEELQENVVSVTV*PLKRKS
Trigger: AGACTTCCTCTTCAGCGGTCACACGGTTACGCTGAC...TACATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp GGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCACTACAAGAATGCAGATaGTCCCGGCAGCACTCAGCA +
Preference number: 4 (lower is better)
Translates to: GTSLTSSLVKSRGGGLSPLQECR*SRQHSA
Trigger: TGCTGAGTGCTGCCGGGATCATCTGCATTCTTGTAG...TGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp GCACCAAAGGATGTTGACCCTTCTGAACGATTTGCATTGTGTTTTTCTCAAGCATCCCGGCCGAAAGGCTaGGGGCCTGGAGCTGACCTC +
Preference number: 4 (lower is better)
Translates to: APKDVDPSERFALCFSQASRPKG*GPGADL
Trigger: GAGGTCAGCTCCAGGCCCTCAGCCTTTCGGCCGGGA...TGCTTGAGAAAAACACAATGCAAATCGTTCAGAAGGGTCAACATCCTTTGGTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR GCA 90 bp CATAAAGTATATTGCCACAAGGGGGCACTGGTAATACAGGAAATAACCCTAATGGCCCGGTGGCAGCAGTaGCCGTTCCTGCTGCCGTGG +
Preference number: 4 (lower is better)
Translates to: HKVYCHKGALVIQEITLMARWQQ*PFLLPW
Trigger: CCACGGCAGCAGGAACGGGCACTGCTGCCACCGGGC...CATTAGGGTTATTTCCTGTATTACCAGTGCCCCCTTGTGGCAATATACTTTATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR GCA 90 bp AAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATGTAGCTAGAAGAGTTGACTaGCCTGGGGCACCAGATCCA +
Preference number: 4 (lower is better)
Translates to: KSRGGGLSPMNEELQENVARRVD*PGAPDP
Trigger: TGGATCTGGTGCCCCAGGGCAGTCAACTCTTCTAGC...TACATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR TCA 90 bp GTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATCCTGAGAGTCTCCATTaGGCTTTGGAGCACACTGGA +
Preference number: 4 (lower is better)
Translates to: VKSRGGGLSPMNEELQENPESLH*ALEHTG
Trigger: TCCAGTGTGCTCCAAAGCTCAATGGAGACTCTCAGG...ATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR GCA 90 bp GGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCATTTCCCTTGTCCTTCTaGAGAGCCCCCAGCTATCAA +
Preference number: 4 (lower is better)
Translates to: GTSLTSSLVKSRGGGLSPFPLSF*RAPSYQ
Trigger: TTGATAGCTGGGGGCTCTGCAGAAGGACAAGGGAAA...TGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000394686.3
CDS-3UTR CCA 90 bp GTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATAGTAAAGTCCCGGGGTaGGGGCTTGTCACCAATGAA +
Preference number: 4 (lower is better)
Translates to: VKSRGGGLSPMNEELQENSKVPG*GLVTNE
Trigger: TTCATTGGTGACAAGCCCCCACCCCGGGACTTTACT...ATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp AGAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCGCTCCGTCGGCCCGGTaGCAGCAGTGCCCGTTCCTG +
Preference number: 4 (lower is better)
Translates to: RKEEYVLWHLFNKLISKVAPSAR*QQCPFL
Trigger: CAGGAACGGGCACTGCTGCCACCGGGCCGACGGAGC...GACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CCA 90 bp GTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATAACACTCCCAGTCTCTaGCAGGTCCTTTTGGAGAAG +
Preference number: 4 (lower is better)
Translates to: VKSRGGGLSPMNEELQENNTPSL*QVLLEK
Trigger: CTTCTCCAAAAGGACCTGCCAGAGACTGGGAGTGTT...ATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR TCA 90 bp TTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGTCAGCGTAACCGTGTaGCCGCTGAAGAGGAAGTCT +
Preference number: 4 (lower is better)
Translates to: LTSSLVKSRGGGLSPMNEVSVTV*PLKRKS
Trigger: AGACTTCCTCTTCAGCGGTCACACGGTTACGCTGAC...TTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp ACTCCTGGACTCAACCCGAACTTTCCCCGTGACAGGGTAGAAACAAAATTCACCGGGGCTTGTCACCAATaGATGAAGAGCTGCAAGAGA +
Preference number: 4 (lower is better)
Translates to: TPGLNPNFPRDRVETKFTGACHQ*MKSCKR
Trigger: TCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCC...GGTGAATTTTGTTTCTACCCTGTCACGGGGAAAGTTCGGGTTGAGTCCAGGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR GCA 90 bp GTTTGCATTCCAAGTCATAAAGTATATTGCCACAAGGGGGCACTGGTAATACAGGTGGCAGCAGCAGTGTaGACTCCTGGACTCAACCCG +
Preference number: 4 (lower is better)
Translates to: VCIPSHKVYCHKGALVIQVAAAV*TPGLNP
Trigger: CGGGTTGAGTCCAGGAGTGCACACTGCTGCTGCCAC...CTGTATTACCAGTGCCCCCTTGTGGCAATATACTTTATGACTTGGAATGCAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CCA 90 bp GGCTCAAGGAAAACACCAGTGTTAGGAGAGCAAAATCCAGGCTTCTGTGTCAGAAAACTTGTCTGGGAGTaGAGGGCTAAGCTCCTTGGG +
Preference number: 4 (lower is better)
Translates to: GSRKTPVLGEQNPGFCVRKLVWE*RAKLLG
Trigger: CCCAAGGAGCTTAGCCCTCCACTCCCAGACAAGTTT...TCTGACACAGAAGCCTGGATTTTGCTCTCCTAACACTGGTGTTTTCCTTGAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CCA 90 bp CCAGGGCCTGACCTGGAAAGAAAACAGGCTCATTCCCCAAGTGGTGTGAACCTCTCATTGGCCATTGAATaGTACCACCAAAACAGTCGT +
Preference number: 4 (lower is better)
Translates to: PGPDLERKQAHSPSGVNLSLAIE*YHQNSR
Trigger: ACGACTGTTTTGGTGGTACCATTCAATGGCCAATGA...GAGGTTCACACCACTTGGGGAATGAGCCTGTTTTCTTTCCAGGTCAGGCCCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR TCA 90 bp GGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAGTTTTGCTGTCTCTATaGTATCCATTGTCCCCTAGT +
Preference number: 4 (lower is better)
Translates to: GTSLTSSLVKSRGGGLSPVLLSL*YPLSPS
Trigger: ACTAGGGGACAATGGATATCATAGAGACAGCAAAAC...TGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp GGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAGAAACAGCCACTGGGTaGTCCATAATCCAACTAATA +
Preference number: 4 (lower is better)
Translates to: GTSLTSSLVKSRGGGLSPETATG*SIIQLI
Trigger: TATTAGTTGGATTATGGATCACCCAGTGGCTGTTTC...TGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp GTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATTCTGCGTCCCACTATTaGCTTGTATCTCAGAAACAG +
Preference number: 4 (lower is better)
Translates to: VKSRGGGLSPMNEELQENSASHY*LVSQKQ
Trigger: CTGTTTCTGAGATACAAGTCAATAGTGGGACGCAGA...ATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp CACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATTTTTGCATGATGATTTaGAGCAGCCAGGAGGCCAAG +
Preference number: 4 (lower is better)
Translates to: HLFNKLISKVPGWGLVTNFCMMI*SSQEAK
Trigger: CTTGGCCTCCTGGCTGCTTCAAATCATCATGCAAAA...ATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp CTCAACGCTCACTCTCAAAACAGCCTTCCTGCCACAGCAAAACTTGTTTCCCAAGGTGTGAACCTCAGTTaGCACACACGTGTTTTCAGC +
Preference number: 4 (lower is better)
Translates to: LNAHSQNSLPATAKLVSQGVNLS*HTRVFS
Trigger: GCTGAAAACACGTGTGTGTCAACTGAGGTTCACACC...TTGGGAAACAAGTTTTGCTGTGGCAGGAAGGCTGTTTTGAGAGTGAGCGTTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR GCA 90 bp CTCAACATTAGGCAGTTCTATTTACACAGTGGCTGTAGATGTCCAGATATTTTAAGCAGTGCCCGTTCCTaGTGCCGTGGCTCTCCTGGC +
Preference number: 4 (lower is better)
Translates to: LNIRQFYLHSGCRCPDILSSARS*CRGSPG
Trigger: GCCAGGAGAGCCACGGCAGCAGGAACGGGCACTGCT...TAAAATATCTGGACATCTACAGCCACTGTGTAAATAGAACTGCCTAATGTTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CCA 90 bp AAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATGTAGTCTCCATTGAGCTTTaGAGCACACTGGAAATGCAT +
Preference number: 4 (lower is better)
Translates to: KSRGGGLSPMNEELQENVVSIEL*STLEMH
Trigger: ATGCATTTCCAGTGTGCTCCAAAGCTCAATGGAGAC...TACATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp ACTCCTGGACTCAACCCGAACTTTCCCCGTGACAGGGTAGAAACAAAATTCACCATGCGTGTAAAGACATaGCAGCGGCAATGTCCACAT +
Preference number: 4 (lower is better)
Translates to: TPGLNPNFPRDRVETKFTMRVKT*QRQCPH
Trigger: ATGTGGACATTGCCGCTGCCATGTCTTTACACGCAT...GGTGAATTTTGTTTCTACCCTGTCACGGGGAAAGTTCGGGTTGAGTCCAGGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR CAA 72 bp CACCCAAAGCTGACGCACAACCCACGGATCTCCCCCTaGCTAAACCTAATGCTAAAAACCACTCTCAACATT +
Preference number: 4 (lower is better)
Translates to: HPKLTHNPRISP*LNLMLKTTLNI
Trigger: AATGTTGAGAGTGGTTTTTAGCATTAGGTTTAGCAAGGGGGAGATCCGTGGGTTGTGCGTCAGCTTTGGGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR TCA 90 bp AAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATGTAGAAACAGCCACTGGGTaGTCCATAATCCAACTAATA +
Preference number: 4 (lower is better)
Translates to: KSRGGGLSPMNEELQENVETATG*SIIQLI
Trigger: TATTAGTTGGATTATGGATCACCCAGTGGCTGTTTC...TACATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp CACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATTCTGCGTCCCACTATTaGCTTGTATCTCAGAAACAG +
Preference number: 4 (lower is better)
Translates to: HLFNKLISKVPGWGLVTNSASHY*LVSQKQ
Trigger: CTGTTTCTGAGATACAAGTCAATAGTGGGACGCAGA...ATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp AAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATGTAAAACCTTCAACACCATaGACTGCTACTTCTAACGGA +
Preference number: 4 (lower is better)
Translates to: KSRGGGLSPMNEELQENVKPSTP*TATSNG
Trigger: TCCGTTAGAAGTAGCAGTTCATGGTGTTGAAGGTTT...TACATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000394686.3
CDS-3UTR TCA 90 bp TTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCAACTTCCTCAACTCGATaGCAGAGCTATACGACACAT +
Preference number: 4 (lower is better)
Translates to: FGTSLTSSLVKSRGGGLSTSSTR*QSYTTH
Trigger: ATGTGTCGTATAGCTCTGTCATCGAGTTGAGGAAGT...TGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR TCA 90 bp AAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATGTACAAGTGCCTATAATCTaGGCACATTTTACCTTTGGG +
Preference number: 4 (lower is better)
Translates to: KSRGGGLSPMNEELQENVQVPII*AHFTFG
Trigger: CCCAAAGGTAAAATGTGCTCAGATTATAGGCACTTG...TACATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR GCA 90 bp AAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATGTAAATCCGTTGAACTTTTaGCTGAGAGTCTCCATTGAG +
Preference number: 4 (lower is better)
Translates to: KSRGGGLSPMNEELQENVNPLNF*LRVSIE
Trigger: CTCAATGGAGACTCTCAGGCAAAAGTTCAACGGATT...TACATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp CACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGTCTCCATTGAGCTTTaGAGCACACTGGAAATGCAT +
Preference number: 4 (lower is better)
Translates to: HLFNKLISKVPGWGLVTNVSIEL*STLEMH
Trigger: ATGCATTTCCAGTGTGCTCCAAAGCTCAATGGAGAC...ATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp GTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATTCATTGGCCATTGAATaGTACCACCAAAACAGTCGT +
Preference number: 4 (lower is better)
Translates to: VKSRGGGLSPMNEELQENSLAIE*YHQNSR
Trigger: ACGACTGTTTTGGTGGTACCATTCAATGGCCAATGA...ATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp CAAAACTATACCTTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCTCTCCTGGCGCAGAGTaGAGCTCGAAAAACCTGCGC +
Preference number: 4 (lower is better)
Translates to: QNYTFGYSVNSFGVRADASPGAE*SSKNLR
Trigger: GCGCAGGTTTTTCGAGCTCCACTCTGCGCCAGGAGA...GGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAAGGTATAGTTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CCA 90 bp CTCAACATTAGGCAGTTCTATTTACACAGTGGCTGTAGATGTCCAGATATTTTACTGCCGTGGCTCTCCTaGCGCAGAGTGGAGCTCGAA +
Preference number: 4 (lower is better)
Translates to: LNIRQFYLHSGCRCPDILLPWLS*RRVELE
Trigger: TTCGAGCTCCACTCTGCGCCAGGAGAGCCACGGCAG...TAAAATATCTGGACATCTACAGCCACTGTGTAAATAGAACTGCCTAATGTTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR TCA 90 bp AAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATGTATGGAAATTTGTTCCTTaGTTCAGTGGGCATAGCAAT +
Preference number: 4 (lower is better)
Translates to: KSRGGGLSPMNEELQENVWKFVP*FSGHSN
Trigger: ATTGCTATGCCCACTGAATCAAGGAACAAATTTCCA...TACATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR GCA 90 bp TTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCATTCCATGCAGCTATATaGTGTACCTTCACCACTTTC +
Preference number: 4 (lower is better)
Translates to: FGTSLTSSLVKSRGGGLSFHAAI*CTFTTF
Trigger: GAAAGTGGTGAAGGTACAGCATATAGCTGCATGGAA...TGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR GCA 90 bp CAAAACTATACCTTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCCCGGGTACTTTTTGGTaGCTTTTCGCAGCCCACTGG +
Preference number: 4 (lower is better)
Translates to: QNYTFGYSVNSFGVRADAPGTFW*LFAAHW
Trigger: CCAGTGGGCTGCGAAAAGGCACCAAAAAGTACCCGG...GGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAAGGTATAGTTTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR GCA 90 bp CAAAACTATACCTTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCTCCCACCTTGGTCCTTaGAGCAGTCAACACTCCCAG +
Preference number: 4 (lower is better)
Translates to: QNYTFGYSVNSFGVRADASHLGP*SSQHSQ
Trigger: CTGGGAGTGTTGACTGCTGCAAGGACCAAGGTGGGA...GGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAAGGTATAGTTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CCA 90 bp AAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATGTATATGTGATCCAGTTATaGACAATCCACCACCAGAAA +
Preference number: 4 (lower is better)
Translates to: KSRGGGLSPMNEELQENVYVIQL*TIHHQK
Trigger: TTTCTGGTGGTGGATTGTCCATAACTGGATCACATA...TACATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp GTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATTATGTGATCCAGTTATaGACAATCCACCACCAGAAA +
Preference number: 4 (lower is better)
Translates to: VKSRGGGLSPMNEELQENYVIQL*TIHHQK
Trigger: TTTCTGGTGGTGGATTGTCCATAACTGGATCACATA...ATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp CACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATTCATTGGCCATTGAATaGTACCACCAAAACAGTCGT +
Preference number: 4 (lower is better)
Translates to: HLFNKLISKVPGWGLVTNSLAIE*YHQNSR
Trigger: ACGACTGTTTTGGTGGTACCATTCAATGGCCAATGA...ATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp CAAAACTATACCTTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCCCTGAGAGTCTCCATTaGGCTTTGGAGCACACTGGA +
Preference number: 4 (lower is better)
Translates to: QNYTFGYSVNSFGVRADAPESLH*ALEHTG
Trigger: TCCAGTGTGCTCCAAAGCTCAATGGAGACTCTCAGG...GGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAAGGTATAGTTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR GCA 90 bp GGCTCAAGGAAAACACCAGTGTTAGGAGAGCAAAATCCAGGCTTCTGTGTCAGATTCCATGCAGCTATATaGTGTACCTTCACCACTTTC +
Preference number: 4 (lower is better)
Translates to: GSRKTPVLGEQNPGFCVRFHAAI*CTFTTF
Trigger: GAAAGTGGTGAAGGTACAGCATATAGCTGCATGGAA...TCTGACACAGAAGCCTGGATTTTGCTCTCCTAACACTGGTGTTTTCCTTGAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR GCA 90 bp AAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATGTATTACTGTTTCTTCCATaGAGCTATATGCTGTACCTT +
Preference number: 4 (lower is better)
Translates to: KSRGGGLSPMNEELQENVLLFLP*SYMLYL
Trigger: AAGGTACAGCATATAGCTGCATGGAAGAAACAGTAA...TACATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR GCA 90 bp GTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATCCACTTACAGCATCTTaGCAAATCATCATCCAAATT +
Preference number: 4 (lower is better)
Translates to: VKSRGGGLSPMNEELQENPLTAS*QIIIQI
Trigger: AATTTGGATGATGATTTGGCAAGATGCTGTAAGTGG...ATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000394686.3
CDS-3UTR GCA 90 bp GGCTCAAGGAAAACACCAGTGTTAGGAGAGCAAAATCCAGGCTTCTGTGTCAGATCAAAACAGCCTTCCTaGCACAGCAAAACTTGTTTC +
Preference number: 4 (lower is better)
Translates to: GSRKTPVLGEQNPGFCVRSKQPS*HSKTCF
Trigger: GAAACAAGTTTTGCTGTGGCAGGAAGGCTGTTTTGA...TCTGACACAGAAGCCTGGATTTTGCTCTCCTAACACTGGTGTTTTCCTTGAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CCA 90 bp CAAAACTATACCTTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCAGTCCGGGTACTTTTTaGTGCCTTTTCGCAGCCCAC +
Preference number: 4 (lower is better)
Translates to: QNYTFGYSVNSFGVRADASPGTF*CLFAAH
Trigger: GTGGGCTGCGAAAAGGCACCAAAAAGTACCCGGACT...GGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAAGGTATAGTTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp CAAAACTATACCTTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCAAACTTGTCTGGGAGTaGAGGGCTAAGCTCCTTGGG +
Preference number: 4 (lower is better)
Translates to: QNYTFGYSVNSFGVRADAKLVWE*RAKLLG
Trigger: CCCAAGGAGCTTAGCCCTCCACTCCCAGACAAGTTT...GGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAAGGTATAGTTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp TTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCATCAAGTTCTTTTCATTaGCCATTGAATGGTACCACC +
Preference number: 4 (lower is better)
Translates to: FGTSLTSSLVKSRGGGLSSSSFH*PLNGTT
Trigger: GGTGGTACCATTCAATGGCCAATGAAAAGAACTTGA...TGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp CATAAAGTATATTGCCACAAGGGGGCACTGGTAATACAGGAAATAACCCTAATGAGTAAAGTCCCGGGGTaGGGGCTTGTCACCAATGAA +
Preference number: 4 (lower is better)
Translates to: HKVYCHKGALVIQEITLMSKVPG*GLVTNE
Trigger: TTCATTGGTGACAAGCCCCCACCCCGGGACTTTACT...CATTAGGGTTATTTCCTGTATTACCAGTGCCCCCTTGTGGCAATATACTTTATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CCA 90 bp GTTTGCATTCCAAGTCATAAAGTATATTGCCACAAGGGGGCACTGGTAATACAGCACCAGGGCCTGACCTaGAAAGAAAACAGGCTCATT +
Preference number: 4 (lower is better)
Translates to: VCIPSHKVYCHKGALVIQHQGLT*KENRLI
Trigger: AATGAGCCTGTTTTCTTTCCAGGTCAGGCCCTGGTG...CTGTATTACCAGTGCCCCCTTGTGGCAATATACTTTATGACTTGGAATGCAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR TCA 90 bp CTCAACATTAGGCAGTTCTATTTACACAGTGGCTGTAGATGTCCAGATATTTTAGTCAGCGTAACCGTGTaGCCGCTGAAGAGGAAGTCT +
Preference number: 4 (lower is better)
Translates to: LNIRQFYLHSGCRCPDILVSVTV*PLKRKS
Trigger: AGACTTCCTCTTCAGCGGTCACACGGTTACGCTGAC...TAAAATATCTGGACATCTACAGCCACTGTGTAAATAGAACTGCCTAATGTTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR TCA 90 bp TTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAACTTTTCATTGGCCATTaGATGGTACCACCAAAACAG +
Preference number: 4 (lower is better)
Translates to: LTSSLVKSRGGGLSPMNELFIGH*MVPPKQ
Trigger: CTGTTTTGGTGGTACCATTCAATGGCCAATGAAAAG...TTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp TTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAAGCAGCAAGGAATTaGGCCTTGTACATTTTTCTC +
Preference number: 4 (lower is better)
Translates to: LTSSLVKSRGGGLSPMNEEAARN*ALYIFL
Trigger: GAGAAAAATGTACAAGGCTCAATTCCTTGCTGCTTC...TTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR GCA 90 bp CTCAACATTAGGCAGTTCTATTTACACAGTGGCTGTAGATGTCCAGATATTTTACCGGGTACTTTTTGGTaGCTTTTCGCAGCCCACTGG +
Preference number: 4 (lower is better)
Translates to: LNIRQFYLHSGCRCPDILPGTFW*LFAAHW
Trigger: CCAGTGGGCTGCGAAAAGGCACCAAAAAGTACCCGG...TAAAATATCTGGACATCTACAGCCACTGTGTAAATAGAACTGCCTAATGTTGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR GCA 90 bp TTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAACTAGAAAATTCTGTGTaGTTCAAAGCCTGCCAAGGA +
Preference number: 4 (lower is better)
Translates to: LTSSLVKSRGGGLSPMNELENSV*FKACQG
Trigger: TCCTTGGCAGGCTTTGAAGCACACAGAATTTTCTAG...TTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CCA 90 bp TTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCAAACTCCATTTCACAGTaGATGTACAGATGGTCTTTA +
Preference number: 4 (lower is better)
Translates to: FGTSLTSSLVKSRGGGLSNSISQ*MYRWSL
Trigger: TAAAGACCATCTGTACATCCACTGTGAAATGGAGTT...TGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000359079.8
CDS-3UTR CCA 90 bp AAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATGTACATGGACTCTTACAATaGACTTTGTTTCCTAATACA +
Preference number: 4 (lower is better)
Translates to: KSRGGGLSPMNEELQENVHGLLQ*TLFPNT
Trigger: TGTATTAGGAAACAAAGTCCATTGTAAGAGTCCATG...TACATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp GGCTCAAGGAAAACACCAGTGTTAGGAGAGCAAAATCCAGGCTTCTGTGTCAGAATCAAAGTGGCACATTaGGTTGAAGCTCAACTTTTC +
Preference number: 4 (lower is better)
Translates to: GSRKTPVLGEQNPGFCVRIKVAH*VEAQLF
Trigger: GAAAAGTTGAGCTTCAACCCAATGTGCCACTTTGAT...TCTGACACAGAAGCCTGGATTTTGCTCTCCTAACACTGGTGTTTTCCTTGAGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR TCA 90 bp AGAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCTGAGAGTCTCCATTaGGCTTTGGAGCACACTGGA +
Preference number: 4 (lower is better)
Translates to: RKEEYVLWHLFNKLISKVPESLH*ALEHTG
Trigger: TCCAGTGTGCTCCAAAGCTCAATGGAGACTCTCAGG...GACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp AGAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCTACAAGAATGCAGATaGTCCCGGCAGCACTCAGCA +
Preference number: 4 (lower is better)
Translates to: RKEEYVLWHLFNKLISKVLQECR*SRQHSA
Trigger: TGCTGAGTGCTGCCGGGATCATCTGCATTCTTGTAG...GACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp TTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCTTTGTTTTGCTCTTTTGCATGATGATTTaGAGCAGCCAGGAGGCCAAG +
Preference number: 4 (lower is better)
Translates to: FGYSVNSFGVRADAFVLLFCMMI*SSQEAK
Trigger: CTTGGCCTCCTGGCTGCTTCAAATCATCATGCAAAA...GAGCAAAACAAAGGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp GAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCAAATTCACCCAAAGCTaGCGCACAACCCACGGATCT +
Preference number: 4 (lower is better)
Translates to: ERRNMFFGTSLTSSLVKSKFTQS*RTTHGS
Trigger: AGATCCGTGGGTTGTGCGTCAGCTTTGGGTGAATTT...GGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR TCA 90 bp CAAAACTATACCTTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCCCCGAACTTTCCCCGTaGCAGGGTAGAAACAAAATT +
Preference number: 4 (lower is better)
Translates to: QNYTFGYSVNSFGVRADAPELSP*QGRNKI
Trigger: AATTTTGTTTCTACCCTGTCACGGGGAAAGTTCGGG...GGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAAGGTATAGTTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR TCA 90 bp TTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAATGGGTAACATTGACATaGTTTTCAGTGTTTGGGTGT +
Preference number: 4 (lower is better)
Translates to: LTSSLVKSRGGGLSPMNEWVTLT*FSVFGC
Trigger: ACACCCAAACACTGAAAATCATGTCAATGTTACCCA...TTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR GCA 90 bp TTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCTTTGTTTTGCTCAGGTTCAGCGGGTCTTaGATAAGTGTTCGTAGGATC +
Preference number: 4 (lower is better)
Translates to: FGYSVNSFGVRADAFVLLRFSGS*ISVRRI
Trigger: GATCCTACGAACACTTATGCAAGACCCGCTGAACCT...GAGCAAAACAAAGGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR GCA 90 bp AGAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCGGCCTCTCCACCCTCTaGCCCAGTGTTGATAACTTT +
Preference number: 4 (lower is better)
Translates to: RKEEYVLWHLFNKLISKVGLSTL*PSVDNF
Trigger: AAAGTTATCAACACTGGGGCAGAGGGTGGAGAGGCC...GACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CCA 90 bp TTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACATGGACTCTTACAATaGACTTTGTTTCCTAATACA +
Preference number: 4 (lower is better)
Translates to: FGTSLTSSLVKSRGGGLSHGLLQ*TLFPNT
Trigger: TGTATTAGGAAACAAAGTCCATTGTAAGAGTCCATG...TGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp AGAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCAGTCCGGGTACTTTTTaGTGCCTTTTCGCAGCCCAC +
Preference number: 4 (lower is better)
Translates to: RKEEYVLWHLFNKLISKVSPGTF*CLFAAH
Trigger: GTGGGCTGCGAAAAGGCACCAAAAAGTACCCGGACT...GACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp AGAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCAAACTTGTCTGGGAGTaGAGGGCTAAGCTCCTTGGG +
Preference number: 4 (lower is better)
Translates to: RKEEYVLWHLFNKLISKVKLVWE*RAKLLG
Trigger: CCCAAGGAGCTTAGCCCTCCACTCCCAGACAAGTTT...GACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp TTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAATATGTGATCCAGTTATaGACAATCCACCACCAGAAA +
Preference number: 4 (lower is better)
Translates to: LTSSLVKSRGGGLSPMNEYVIQL*TIHHQK
Trigger: TTTCTGGTGGTGGATTGTCCATAACTGGATCACATA...TTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp CATAAAGTATATTGCCACAAGGGGGCACTGGTAATACAGGAAATAACCCTAATGGTTACTATCCCACCTTaGTCCTTGCAGCAGTCAACA +
Preference number: 4 (lower is better)
Translates to: HKVYCHKGALVIQEITLMVTIPP*SLQQST
Trigger: TGTTGACTGCTGCAAGGACCAAGGTGGGATAGTAAC...CATTAGGGTTATTTCCTGTATTACCAGTGCCCCCTTGTGGCAATATACTTTATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR CAA 72 bp AAATACATTTCTGTGCTCCAATTAGGAGCCCTAAAATaGATCTCACACCAGGGCCTGACCTGGAAAGAAAAC +
Preference number: 4 (lower is better)
Translates to: KYISVLQLGALK*ISHQGLTWKEN
Trigger: GTTTTCTTTCCAGGTCAGGCCCTGGTGTGAGATCAATTTTAGGGCTCCTAATTGGAGCACAGAAATGTATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR CAA 72 bp CATGCGTGTAAAGACATGGCAGCGGCAATGTCCACATaGGCATCACAGGTGTTTTTAAAGTTCTTTAAAAGG +
Preference number: 4 (lower is better)
Translates to: HACKDMAAAMST*ASQVFLKFFKR
Trigger: CCTTTTAAAGAACTTTAAAAACACCTGTGATGCCAATGTGGACATTGCCGCTGCCATGTCTTTACACGCATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR TCA 90 bp CTCAACATTAGGCAGTTCTATTTACACAGTGGCTGTAGATGTCCAGATATTTTAATTCCCCAAGTGGTGTaGACCTCAGTTGACACACAC +
Preference number: 4 (lower is better)
Translates to: LNIRQFYLHSGCRCPDILIPQVV*TSVDTH
Trigger: GTGTGTGTCAACTGAGGTTCACACCACTTGGGGAAT...TAAAATATCTGGACATCTACAGCCACTGTGTAAATAGAACTGCCTAATGTTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR TCA 90 bp GCACCAAAGGATGTTGACCCTTCTGAACGATTTGCATTGTGTTTTTCTCAAGCATCAGTGTTTGGGTGTTaGAGTCAAGAGCACTTCTTA +
Preference number: 4 (lower is better)
Translates to: APKDVDPSERFALCFSQASVFGC*SQEHFL
Trigger: TAAGAAGTGCTCTTGACTTCAACACCCAAACACTGA...TGCTTGAGAAAAACACAATGCAAATCGTTCAGAAGGGTCAACATCCTTTGGTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR GCA 90 bp TTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAATTACTGTTTCTTCCATaGAGCTATATGCTGTACCTT +
Preference number: 4 (lower is better)
Translates to: LTSSLVKSRGGGLSPMNELLFLP*SYMLYL
Trigger: AAGGTACAGCATATAGCTGCATGGAAGAAACAGTAA...TTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR GCA 90 bp GAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCAGGTTCAGCGGGTCTTaGATAAGTGTTCGTAGGATC +
Preference number: 4 (lower is better)
Translates to: ERRNMFFGTSLTSSLVKSRFSGS*ISVRRI
Trigger: GATCCTACGAACACTTATGCAAGACCCGCTGAACCT...GGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR GCA 90 bp GCACCAAAGGATGTTGACCCTTCTGAACGATTTGCATTGTGTTTTTCTCAAGCAAATCCGTTGAACTTTTaGCTGAGAGTCTCCATTGAG +
Preference number: 4 (lower is better)
Translates to: APKDVDPSERFALCFSQANPLNF*LRVSIE
Trigger: CTCAATGGAGACTCTCAGGCAAAAGTTCAACGGATT...TGCTTGAGAAAAACACAATGCAAATCGTTCAGAAGGGTCAACATCCTTTGGTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR GCA 90 bp GAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCTCCCCCACCCTTATTTaGAAACCATGGACTTCCTCA +
Preference number: 4 (lower is better)
Translates to: ERRNMFFGTSLTSSLVKSSPTLI*KPWTSS
Trigger: TGAGGAAGTCCATGGTTTGCAAATAAGGGTGGGGGA...GGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CCA 90 bp CAAAACTATACCTTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCCTCAGAAACAGCCACTaGGTGATCCATAATCCAACT +
Preference number: 4 (lower is better)
Translates to: QNYTFGYSVNSFGVRADALRNSH*VIHNPT
Trigger: AGTTGGATTATGGATCACCCAGTGGCTGTTTCTGAG...GGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAAGGTATAGTTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp CAAAACTATACCTTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCGTTTTGCTGTCTCTATaGTATCCATTGTCCCCTAGT +
Preference number: 4 (lower is better)
Translates to: QNYTFGYSVNSFGVRADAVLLSL*YPLSPS
Trigger: ACTAGGGGACAATGGATATCATAGAGACAGCAAAAC...GGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAAGGTATAGTTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp CAAAACTATACCTTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCGAAACAGCCACTGGGTaGTCCATAATCCAACTAATA +
Preference number: 4 (lower is better)
Translates to: QNYTFGYSVNSFGVRADAETATG*SIIQLI
Trigger: TATTAGTTGGATTATGGATCACCCAGTGGCTGTTTC...GGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAAGGTATAGTTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp CAAAACTATACCTTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCCTTTTCATTGGCCATTaGATGGTACCACCAAAACAG +
Preference number: 4 (lower is better)
Translates to: QNYTFGYSVNSFGVRADALFIGH*MVPPKQ
Trigger: CTGTTTTGGTGGTACCATTCAATGGCCAATGAAAAG...GGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAAGGTATAGTTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp GTCAAAGGGCAATACTTTGTTCATCTTTCTAATCGTTTACACAAAATTTGGTCCGGGGCTTGTCACCAATaGATGAAGAGCTGCAAGAGA +
Preference number: 4 (lower is better)
Translates to: VKGQYFVHLSNRLHKIWSGACHQ*MKSCKR
Trigger: TCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCC...GGACCAAATTTTGTGTAAACGATTAGAAAGATGAACAAAGTATTGCCCTTTGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR GCA 90 bp CAAAACTATACCTTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCAATCCGTTGAACTTTTaGCTGAGAGTCTCCATTGAG +
Preference number: 4 (lower is better)
Translates to: QNYTFGYSVNSFGVRADANPLNF*LRVSIE
Trigger: CTCAATGGAGACTCTCAGGCAAAAGTTCAACGGATT...GGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAAGGTATAGTTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp TTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAACATGGACTCTTACAATaGACTTTGTTTCCTAATACA +
Preference number: 4 (lower is better)
Translates to: LTSSLVKSRGGGLSPMNEHGLLQ*TLFPNT
Trigger: TGTATTAGGAAACAAAGTCCATTGTAAGAGTCCATG...TTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp GAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCGTCTCCATTGAGCTTTaGAGCACACTGGAAATGCAT +
Preference number: 4 (lower is better)
Translates to: ERRNMFFGTSLTSSLVKSVSIEL*STLEMH
Trigger: ATGCATTTCCAGTGTGCTCCAAAGCTCAATGGAGAC...GGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp GTCAAAGGGCAATACTTTGTTCATCTTTCTAATCGTTTACACAAAATTTGGTCCGGCTCATTCCCCAAGTaGTGTGAACCTCAGTTGACA +
Preference number: 4 (lower is better)
Translates to: VKGQYFVHLSNRLHKIWSGSFPK*CEPQLT
Trigger: TGTCAACTGAGGTTCACACCACTTGGGGAATGAGCC...GGACCAAATTTTGTGTAAACGATTAGAAAGATGAACAAAGTATTGCCCTTTGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR TCA 90 bp CAAAACTATACCTTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCGTAGGATCACTGGGTTaGTTTTCCAAATGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: QNYTFGYSVNSFGVRADAVGSLG*FSKCSS
Trigger: TGAAGAACATTTGGAAAATCAACCCAGTGATCCTAC...GGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAAGGTATAGTTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp GAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCGAAGCAGCAAGGAATTaGGCCTTGTACATTTTTCTC +
Preference number: 4 (lower is better)
Translates to: ERRNMFFGTSLTSSLVKSEAARN*ALYIFL
Trigger: GAGAAAAATGTACAAGGCTCAATTCCTTGCTGCTTC...GGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp TTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCTTTGTTTTGCTCTCTTCACCAATCTTCTaGACCCGTGAATACTTTTTG +
Preference number: 4 (lower is better)
Translates to: FGYSVNSFGVRADAFVLLSSPIF*TREYFL
Trigger: CAAAAAGTATTCACGGGTTCAGAAGATTGGTGAAGA...GAGCAAAACAAAGGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp CAAAACTATACCTTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCTCCATCTTGAAATTTTaGTTCCCCCACCCTTATTTG +
Preference number: 4 (lower is better)
Translates to: QNYTFGYSVNSFGVRADASILKF*FPHPYL
Trigger: CAAATAAGGGTGGGGGAATCAAAATTTCAAGATGGA...GGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAAGGTATAGTTTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR GCA 90 bp GTCAAAGGGCAATACTTTGTTCATCTTTCTAATCGTTTACACAAAATTTGGTCCGTGTGCTTCAAAGCCTaGCAAGGATGTTTGGGGTTT +
Preference number: 4 (lower is better)
Translates to: VKGQYFVHLSNRLHKIWSVCFKA*QGCLGF
Trigger: AAACCCCAAACATCCTTGGCAGGCTTTGAAGCACAC...GGACCAAATTTTGTGTAAACGATTAGAAAGATGAACAAAGTATTGCCCTTTGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CCA 90 bp TTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCTTTGTTTTGCTCCACTGGATAAGCTCTTaGGTTTACCATTGCCATTTT +
Preference number: 4 (lower is better)
Translates to: FGYSVNSFGVRADAFVLLHWISS*VYHCHF
Trigger: AAAATGGCAATGGTAAACCCAAGAGCTTATCCAGTG...GAGCAAAACAAAGGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp CTCAACATTAGGCAGTTCTATTTACACAGTGGCTGTAGATGTCCAGATATTTTACTCAGAAACAGCCACTaGGTGATCCATAATCCAACT +
Preference number: 4 (lower is better)
Translates to: LNIRQFYLHSGCRCPDILLRNSH*VIHNPT
Trigger: AGTTGGATTATGGATCACCCAGTGGCTGTTTCTGAG...TAAAATATCTGGACATCTACAGCCACTGTGTAAATAGAACTGCCTAATGTTGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CCA 90 bp TTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCTTTGTTTTGCTCTCAAGTTCTTTTCATTaGCCATTGAATGGTACCACC +
Preference number: 4 (lower is better)
Translates to: FGYSVNSFGVRADAFVLLSSSFH*PLNGTT
Trigger: GGTGGTACCATTCAATGGCCAATGAAAAGAACTTGA...GAGCAAAACAAAGGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp GTCAAAGGGCAATACTTTGTTCATCTTTCTAATCGTTTACACAAAATTTGGTCCGGCTTGACAGTGTCTTaGCACAATGTTGTGGGAAGA +
Preference number: 4 (lower is better)
Translates to: VKGQYFVHLSNRLHKIWSGLTVS*HNVVGR
Trigger: TCTTCCCACAACATTGTGCCAAGACACTGTCAAGCC...GGACCAAATTTTGTGTAAACGATTAGAAAGATGAACAAAGTATTGCCCTTTGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394686.3
CDS-3UTR CCA 90 bp GCACCAAAGGATGTTGACCCTTCTGAACGATTTGCATTGTGTTTTTCTCAAGCATGTTTTATATCAAAGTaGCACATTGGGTTGAAGCTC +
Preference number: 4 (lower is better)
Translates to: APKDVDPSERFALCFSQACFISK*HIGLKL
Trigger: GAGCTTCAACCCAATGTGCCACTTTGATATAAAACA...TGCTTGAGAAAAACACAATGCAAATCGTTCAGAAGGGTCAACATCCTTTGGTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR TCA 90 bp AGAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCGTTTTGCTGTCTCTATaGTATCCATTGTCCCCTAGT +
Preference number: 4 (lower is better)
Translates to: RKEEYVLWHLFNKLISKVVLLSL*YPLSPS
Trigger: ACTAGGGGACAATGGATATCATAGAGACAGCAAAAC...GACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR GCA 90 bp TTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCTTTGTTTTGCTCTTACTGTTTCTTCCATaGAGCTATATGCTGTACCTT +
Preference number: 4 (lower is better)
Translates to: FGYSVNSFGVRADAFVLLLLFLP*SYMLYL
Trigger: AAGGTACAGCATATAGCTGCATGGAAGAAACAGTAA...GAGCAAAACAAAGGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR GCA 90 bp GAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCAATATAAACATAACTaGCTCCTTCTACCCGCATTG +
Preference number: 4 (lower is better)
Translates to: ERRNMFFGTSLTSSLVKSQYKHN*LLLPAL
Trigger: CAATGCGGGTAGAAGGAGGCAGTTATGTTTATATTG...GGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CCA 90 bp GAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCACTGGATAAGCTCTTaGGTTTACCATTGCCATTTT +
Preference number: 4 (lower is better)
Translates to: ERRNMFFGTSLTSSLVKSHWISS*VYHCHF
Trigger: AAAATGGCAATGGTAAACCCAAGAGCTTATCCAGTG...GGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp GTCAAAGGGCAATACTTTGTTCATCTTTCTAATCGTTTACACAAAATTTGGTCCCTCAGAAACAGCCACTaGGTGATCCATAATCCAACT +
Preference number: 4 (lower is better)
Translates to: VKGQYFVHLSNRLHKIWSLRNSH*VIHNPT
Trigger: AGTTGGATTATGGATCACCCAGTGGCTGTTTCTGAG...GGACCAAATTTTGTGTAAACGATTAGAAAGATGAACAAAGTATTGCCCTTTGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp GAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCTCAAGTTCTTTTCATTaGCCATTGAATGGTACCACC +
Preference number: 4 (lower is better)
Translates to: ERRNMFFGTSLTSSLVKSSSSFH*PLNGTT
Trigger: GGTGGTACCATTCAATGGCCAATGAAAAGAACTTGA...GGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp GAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCGAGGAATATGTTCTTTaGCACCTCTTTAACAAGCTC +
Preference number: 4 (lower is better)
Translates to: ERRNMFFGTSLTSSLVKSEEYVL*HLFNKL
Trigger: GAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTC...GGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp GTCAAAGGGCAATACTTTGTTCATCTTTCTAATCGTTTACACAAAATTTGGTCCCTTTTCATTGGCCATTaGATGGTACCACCAAAACAG +
Preference number: 4 (lower is better)
Translates to: VKGQYFVHLSNRLHKIWSLFIGH*MVPPKQ
Trigger: CTGTTTTGGTGGTACCATTCAATGGCCAATGAAAAG...GGACCAAATTTTGTGTAAACGATTAGAAAGATGAACAAAGTATTGCCCTTTGAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp GTCAAAGGGCAATACTTTGTTCATCTTTCTAATCGTTTACACAAAATTTGGTCCGAAGCAGCAAGGAATTaGGCCTTGTACATTTTTCTC +
Preference number: 4 (lower is better)
Translates to: VKGQYFVHLSNRLHKIWSEAARN*ALYIFL
Trigger: GAGAAAAATGTACAAGGCTCAATTCCTTGCTGCTTC...GGACCAAATTTTGTGTAAACGATTAGAAAGATGAACAAAGTATTGCCCTTTGAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp AGAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCTCTTCACCAATCTTCTaGACCCGTGAATACTTTTTG +
Preference number: 4 (lower is better)
Translates to: RKEEYVLWHLFNKLISKVSSPIF*TREYFL
Trigger: CAAAAAGTATTCACGGGTTCAGAAGATTGGTGAAGA...GACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp GAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCTCAATAGATGAAAAGTaGGTTATCCAGACACAGATG +
Preference number: 4 (lower is better)
Translates to: ERRNMFFGTSLTSSLVKSSIDEK*VIQTQM
Trigger: CATCTGTGTCTGGATAACTCACTTTTCATCTATTGA...GGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CCA 90 bp AGAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCACTGGATAAGCTCTTaGGTTTACCATTGCCATTTT +
Preference number: 4 (lower is better)
Translates to: RKEEYVLWHLFNKLISKVHWISS*VYHCHF
Trigger: AAAATGGCAATGGTAAACCCAAGAGCTTATCCAGTG...GACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp AGAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCGAGGAATATGTTCTTTaGCACCTCTTTAACAAGCTC +
Preference number: 4 (lower is better)
Translates to: RKEEYVLWHLFNKLISKVEEYVL*HLFNKL
Trigger: GAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTC...GACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp GTCAAAGGGCAATACTTTGTTCATCTTTCTAATCGTTTACACAAAATTTGGTCCTCTTCACCAATCTTCTaGACCCGTGAATACTTTTTG +
Preference number: 4 (lower is better)
Translates to: VKGQYFVHLSNRLHKIWSSSPIF*TREYFL
Trigger: CAAAAAGTATTCACGGGTTCAGAAGATTGGTGAAGA...GGACCAAATTTTGTGTAAACGATTAGAAAGATGAACAAAGTATTGCCCTTTGAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR TCA 90 bp CTCAACATTAGGCAGTTCTATTTACACAGTGGCTGTAGATGTCCAGATATTTTAAATGTGATAAACCAATaGTTAAGGTACTGGTGGGTA +
Preference number: 4 (lower is better)
Translates to: LNIRQFYLHSGCRCPDILNVINQ*LRYWWV
Trigger: TACCCACCAGTACCTTAATCATTGGTTTATCACATT...TAAAATATCTGGACATCTACAGCCACTGTGTAAATAGAACTGCCTAATGTTGAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CCA 90 bp GAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCTTTCCAAGATCAACATaGACTCTTACAATGGACTTT +
Preference number: 4 (lower is better)
Translates to: ERRNMFFGTSLTSSLVKSFPRST*TLTMDF
Trigger: AAAGTCCATTGTAAGAGTCCATGTTGATCTTGGAAA...GGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CCA 90 bp CAAGATGCCAGTAAATTAAGTAACAAATTCACAATTAGTTCAAGTGGACTCAGGATGATTTTCAGTGTTTaGGTGTTGAAGTCAAGAGCA +
Preference number: 4 (lower is better)
Translates to: QDASKLSNKFTISSSGLRMIFSV*VLKSRA
Trigger: TGCTCTTGACTTCAACACCCAAACACTGAAAATCAT...CCTGAGTCCACTTGAACTAATTGTGAATTTGTTACTTAATTTACTGGCATCTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394684.8
3UTR CAA 72 bp CAGGATGAAGAAGAAAACCAGTCAAAGGGCAATACTTaGTTCATCTTTCTAATCGTTTACACAAAATTTGGT +
Preference number: 4 (lower is better)
Translates to: QDEEENQSKGNT*FIFLIVYTKFG
Trigger: ACCAAATTTTGTGTAAACGATTAGAAAGATGAACAAAGTATTGCCCTTTGACTGGTTTTCTTCTTCATCCTG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS GCA 90 bp AGGATGCAGCTCCGTCGGCCCGGTGGCAGCAGTGCCCGTTCCTGCTaGCGTGGCTCTCCTGGCGCAGAGTGGAGCTCGAAAAACCTGCGC +
Preference number: 5 (lower is better)
Translates to: RMQLRRPGGSSARSC*RGSPGAEWSSKNLR
Trigger: GCGCAGGTTTTTCGAGCTCCACTCTGCGCCAGGAGAGCCACGGCAGCAGGAACGGGCACTGCTGCCACCGGGCCGACGGAGCTGCATCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000394684.8
ENST00000506462.5
CDS GCA 90 bp CACAGGATGCAGCTCCGTCGGCCCGGTGGCAGCAGTGCCCGTTCCTaGTGCCGTGGCTCTCCTGGCGCAGAGTGGAGCTCGAAAAACCTG +
Preference number: 5 (lower is better)
Translates to: HRMQLRRPGGSSARS*CRGSPGAEWSSKNL
Trigger: CAGGTTTTTCGAGCTCCACTCTGCGCCAGGAGAGCCACGGCAGCAGGAACGGGCACTGCTGCCACCGGGCCGACGGAGCTGCATCCTGTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000394684.8
ENST00000506462.5
CDS TCA 90 bp CAGGATGCAGCTCCGCTGGTGGCCAGGGCTCCAGACACTCCCAGCTaGAGGCACTTGCTCCCGGGAAGGGGATTTGCCAGGGGATGGAGC +
Preference number: 5 (lower is better)
Translates to: QDAAPLVARAPDTPS*RHLLPGRGFARGWS
Trigger: GCTCCATCCCCTGGCAAATCCCCTTCCCGGGAGCAAGTGCCTTCAGCTGGGAGTGTCTGGAGCCCTGGCCACCAGCGGAGCTGCATCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000515332.5
CDS-3UTR CAA 90 bp CCAGGGCCTGACCTGGAAAGAAAACAGGCTCATTCCCCAAGTGGTGTGAACCTCCTCCTTCTACCCGCATaGGCCTCTCCACCCTCTGCC +
Preference number: 5 (lower is better)
Translates to: PGPDLERKQAHSPSGVNLLLLPA*ASPPSA
Trigger: GGCAGAGGGTGGAGAGGCCAATGCGGGTAGAAGGAG...GAGGTTCACACCACTTGGGGAATGAGCCTGTTTTCTTTCCAGGTCAGGCCCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp CCAGGGCCTGACCTGGAAAGAAAACAGGCTCATTCCCCAAGTGGTGTGAACCTCATCCCACCTTGGTCCTaGCAGCAGTCAACACTCCCA +
Preference number: 5 (lower is better)
Translates to: PGPDLERKQAHSPSGVNLIPPWS*QQSTLP
Trigger: TGGGAGTGTTGACTGCTGCAAGGACCAAGGTGGGAT...GAGGTTCACACCACTTGGGGAATGAGCCTGTTTTCTTTCCAGGTCAGGCCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp CACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGGAGGGCTAAGCTCCTaGGGAGGGACCCTCTCATGT +
Preference number: 5 (lower is better)
Translates to: HLFNKLISKVPGWGLVTNGGLSS*GGTLSC
Trigger: ACATGAGAGGGTCCCTCCCAAGGAGCTTAGCCCTCC...ATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS CCA 90 bp GCAATTCCCACCTTGGTCCTTGCAGCAGTCAACACTCCCAGTCTCTaGCAGGTCCTTTTGGAGAAGAGTGTTATAGGGCCACAGGATGCA +
Preference number: 5 (lower is better)
Translates to: AIPTLVLAAVNTPSL*QVLLEKSVIGPQDA
Trigger: TGCATCCTGTGGCCCTATAACACTCTTCTCCAAAAGGACCTGCCAGAGACTGGGAGTGTTGACTGCTGCAAGGACCAAGGTGGGAATTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000506462.5
CDS TCA 90 bp TTGTCCTTCTGCAGAGCCCCCAGCTATCAATACATTACAGCAGGATaGGAAAGACCCAGGCCTTTGACATCCCAGGCTTTGACAGGCCCA +
Preference number: 5 (lower is better)
Translates to: LSFCRAPSYQYITAG*ERPRPLTSQALTGP
Trigger: TGGGCCTGTCAAAGCCTGGGATGTCAAAGGCCTGGGTCTTTCTCATCCTGCTGTAATGTATTGATAGCTGGGGGCTCTGCAGAAGGACAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000394686.3
CDS CCA 90 bp TACTATCCCACCTTGGTCCTTGCAGCAGTCAACACTCCCAGTCTCTaGCAGGTCCTTTTGGAGAAGAGTGTTATAGGGCCACAGGATGCA +
Preference number: 5 (lower is better)
Translates to: YYPTLVLAAVNTPSL*QVLLEKSVIGPQDA
Trigger: TGCATCCTGTGGCCCTATAACACTCTTCTCCAAAAGGACCTGCCAGAGACTGGGAGTGTTGACTGCTGCAAGGACCAAGGTGGGATAGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000394684.8
ENST00000515332.5
CDS CCA 90 bp CCACTATTGACCTTGGTCCTTGCAGCAGTCAACACTCCCAGTCTCTaGCAGGTCCTTTTGGAGAAGAGTGTTATAGGGCCACAGGATGCA +
Preference number: 5 (lower is better)
Translates to: PLLTLVLAAVNTPSL*QVLLEKSVIGPQDA
Trigger: TGCATCCTGTGGCCCTATAACACTCTTCTCCAAAAGGACCTGCCAGAGACTGGGAGTGTTGACTGCTGCAAGGACCAAGGTCAATAGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000503862.5
CDS-3UTR CAA 90 bp TTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCTTTGTTTTGCTCGGCAGGCAGGGCAGTTaGGCTCCCGGCCGAAAGGCT +
Preference number: 5 (lower is better)
Translates to: FGYSVNSFGVRADAFVLLGRQGS*APGRKA
Trigger: AGCCTTTCGGCCGGGAGCCAAACTGCCCTGCCTGCC...GAGCAAAACAAAGGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS CCA 90 bp CCTTTGACATCCCAGGCTTTGACAGGCCCAGGCTTGACAGTGTCTTaGCACAATGTTGTGGGAAGAATAAGCACAATGAAGAGGTGCCTC +
Preference number: 5 (lower is better)
Translates to: PLTSQALTGPGLTVS*HNVVGRISTMKRCL
Trigger: GAGGCACCTCTTCATTGTGCTTATTCTTCCCACAACATTGTGCCAAGACACTGTCAAGCCTGGGCCTGTCAAAGCCTGGGATGTCAAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000394686.3
CDS CCA 90 bp TTACTATCCCACTGTTTCCAGATGGTAGCACAGCAATTCCCACCTTaGTCCTTGCAGCAGTCAACACTCCCAGTCTCTGGCAGGTCCTTT +
Preference number: 5 (lower is better)
Translates to: LLSHCFQMVAQQFPP*SLQQSTLPVSGRSF
Trigger: AAAGGACCTGCCAGAGACTGGGAGTGTTGACTGCTGCAAGGACCAAGGTGGGAATTGCTGTGCTACCATCTGGAAACAGTGGGATAGTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000506462.5
CDS-3UTR CAA 90 bp AAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATGTAAGGCTTGACAGTGTCTaGGCACAATGTTGTGGGAAG +
Preference number: 5 (lower is better)
Translates to: KSRGGGLSPMNEELQENVRLDSV*AQCCGK
Trigger: CTTCCCACAACATTGTGCCAAGACACTGTCAAGCCT...TACATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000394686.3
CDS-3UTR CAA 90 bp GTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATCTCTGGCAGGTCCTTTaGGAGAAGAGTGTTATAGGG +
Preference number: 5 (lower is better)
Translates to: VKSRGGGLSPMNEELQENLWQVL*EKSVIG
Trigger: CCCTATAACACTCTTCTCCAAAAGGACCTGCCAGAG...ATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp GGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCACGTAGGATCACTGGGTaGATTTTCCAAATGTTCTTC +
Preference number: 5 (lower is better)
Translates to: GTSLTSSLVKSRGGGLSPRRITG*IFQMFF
Trigger: GAAGAACATTTGGAAAATCAACCCAGTGATCCTACG...TGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp GTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATCCACTGGATAAGCTCTaGGGTTTACCATTGCCATTT +
Preference number: 5 (lower is better)
Translates to: VKSRGGGLSPMNEELQENPLDKL*GLPLPF
Trigger: AAATGGCAATGGTAAACCCAAGAGCTTATCCAGTGG...ATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp AAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATGTAAGTGGGCATAGCAATTaGGATATAGTCCGGGTACTT +
Preference number: 5 (lower is better)
Translates to: KSRGGGLSPMNEELQENVSGHSN*DIVRVL
Trigger: AAGTACCCGGACTATATCCAAATTGCTATGCCCACT...TACATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp GTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATCACTCTAGTGGAAATTaGTTCCTTGATTCAGTGGGC +
Preference number: 5 (lower is better)
Translates to: VKSRGGGLSPMNEELQENHSSGN*FLDSVG
Trigger: GCCCACTGAATCAAGGAACAAATTTCCACTAGAGTG...ATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp CCAGGGCCTGACCTGGAAAGAAAACAGGCTCATTCCCCAAGTGGTGTGAACCTCGTTGTCAAGACGAGGTaGAAAACTGCATATATGAAG +
Preference number: 5 (lower is better)
Translates to: PGPDLERKQAHSPSGVNLVVKTR*KTAYMK
Trigger: CTTCATATATGCAGTTTTCAACCTCGTCTTGACAAC...GAGGTTCACACCACTTGGGGAATGAGCCTGTTTTCTTTCCAGGTCAGGCCCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp CAAAACTATACCTTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCGGAGGGCTAAGCTCCTaGGGAGGGACCCTCTCATGT +
Preference number: 5 (lower is better)
Translates to: QNYTFGYSVNSFGVRADAGGLSS*GGTLSC
Trigger: ACATGAGAGGGTCCCTCCCAAGGAGCTTAGCCCTCC...GGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAAGGTATAGTTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp CACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGCTGATGCCTTTGTTTaGCTCCTCAGGTCGATTTCT +
Preference number: 5 (lower is better)
Translates to: HLFNKLISKVPGWGLVTNADAFV*LLRSIS
Trigger: AGAAATCGACCTGAGGAGCAAAACAAAGGCATCAGC...ATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp CACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATCTCTCTTTAGCAGCCTaGCCTAATCCACTTACAGCA +
Preference number: 5 (lower is better)
Translates to: HLFNKLISKVPGWGLVTNLSLAA*PNPLTA
Trigger: TGCTGTAAGTGGATTAGGCAAGGCTGCTAAAGAGAG...ATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000394686.3
CDS-3UTR CAA 90 bp GGCTCAAGGAAAACACCAGTGTTAGGAGAGCAAAATCCAGGCTTCTGTGTCAGACGTCCCACTATTGACTaGTATCTCAGAAACAGCCAC +
Preference number: 5 (lower is better)
Translates to: GSRKTPVLGEQNPGFCVRRPTID*YLRNSH
Trigger: GTGGCTGTTTCTGAGATACAAGTCAATAGTGGGACG...TCTGACACAGAAGCCTGGATTTTGCTCTCCTAACACTGGTGTTTTCCTTGAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp CAAAACTATACCTTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCTATCCCACCTTTCCCTaGTCCTTCTGCAGAGCCCCC +
Preference number: 5 (lower is better)
Translates to: QNYTFGYSVNSFGVRADAYPTFP*SFCRAP
Trigger: GGGGGCTCTGCAGAAGGACAAGGGAAAGGTGGGATA...GGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAAGGTATAGTTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394686.3
CDS-3UTR CAA 90 bp GGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCACTCTTGGGTTTACCATaGCCATTTTTGTTTTCTTCT +
Preference number: 5 (lower is better)
Translates to: GTSLTSSLVKSRGGGLSPLLGLP*PFLFSS
Trigger: AGAAGAAAACAAAAATGGCAATGGTAAACCCAAGAG...TGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp TTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAACGTCCCACTATTGACTaGTATCTCAGAAACAGCCAC +
Preference number: 5 (lower is better)
Translates to: LTSSLVKSRGGGLSPMNERPTID*YLRNSH
Trigger: GTGGCTGTTTCTGAGATACAAGTCAATAGTGGGACG...TTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp GTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAGAGCTGCAAGAGAATAGAAGCAGCAAGGAATaGAGCCTTGTACATTTTTCT +
Preference number: 5 (lower is better)
Translates to: VKSRGGGLSPMNEELQENRSSKE*SLVHFS
Trigger: AGAAAAATGTACAAGGCTCAATTCCTTGCTGCTTCT...ATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp TTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCTTTGTTTTGCTCGTGATATGTAGCGCATaGGGTGGCAGCAGCAGTGTG +
Preference number: 5 (lower is better)
Translates to: FGYSVNSFGVRADAFVLLVICSA*GGSSSV
Trigger: CACACTGCTGCTGCCACCCAATGCGCTACATATCAC...GAGCAAAACAAAGGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp GTCAAAGGGCAATACTTTGTTCATCTTTCTAATCGTTTACACAAAATTTGGTCCGGAGGGCTAAGCTCCTaGGGAGGGACCCTCTCATGT +
Preference number: 5 (lower is better)
Translates to: VKGQYFVHLSNRLHKIWSGGLSS*GGTLSC
Trigger: ACATGAGAGGGTCCCTCCCAAGGAGCTTAGCCCTCC...GGACCAAATTTTGTGTAAACGATTAGAAAGATGAACAAAGTATTGCCCTTTGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp CACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATTCTTTTCATTGGCCATaGAATGGTACCACCAAAACA +
Preference number: 5 (lower is better)
Translates to: HLFNKLISKVPGWGLVTNSFHWP*NGTTKT
Trigger: TGTTTTGGTGGTACCATTCAATGGCCAATGAAAAGA...ATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp TTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCATTCAAGTTCTTTTCATaGGCCATTGAATGGTACCAC +
Preference number: 5 (lower is better)
Translates to: FGTSLTSSLVKSRGGGLSFKFFS*AIEWYH
Trigger: GTGGTACCATTCAATGGCCAATGAAAAGAACTTGAA...TGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp TTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCAAGAAGCAGCAAGGAATaGAGCCTTGTACATTTTTCT +
Preference number: 5 (lower is better)
Translates to: FGTSLTSSLVKSRGGGLSRSSKE*SLVHFS
Trigger: AGAAAAATGTACAAGGCTCAATTCCTTGCTGCTTCT...TGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp GTTTGCATTCCAAGTCATAAAGTATATTGCCACAAGGGGGCACTGGTAATACAGTGTTACTATCCCACCTaGGTCCTTGCAGCAGTCAAC +
Preference number: 5 (lower is better)
Translates to: VCIPSHKVYCHKGALVIQCYYPT*VLAAVN
Trigger: GTTGACTGCTGCAAGGACCAAGGTGGGATAGTAACA...CTGTATTACCAGTGCCCCCTTGTGGCAATATACTTTATGACTTGGAATGCAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp GCACCAAAGGATGTTGACCCTTCTGAACGATTTGCATTGTGTTTTTCTCAAGCATTAGGAGCCCTAAAATaGATCTCACACCAGGGCCTG +
Preference number: 5 (lower is better)
Translates to: APKDVDPSERFALCFSQALGALK*ISHQGL
Trigger: CAGGCCCTGGTGTGAGATCAATTTTAGGGCTCCTAA...TGCTTGAGAAAAACACAATGCAAATCGTTCAGAAGGGTCAACATCCTTTGGTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp GCACCAAAGGATGTTGACCCTTCTGAACGATTTGCATTGTGTTTTTCTCAAGCATTCCCCCACCCTTATTaGCAAACCATGGACTTCCTC +
Preference number: 5 (lower is better)
Translates to: APKDVDPSERFALCFSQAFPHPY*QTMDFL
Trigger: GAGGAAGTCCATGGTTTGCAAATAAGGGTGGGGGAA...TGCTTGAGAAAAACACAATGCAAATCGTTCAGAAGGGTCAACATCCTTTGGTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp TTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAACGTAGGATCACTGGGTaGATTTTCCAAATGTTCTTC +
Preference number: 5 (lower is better)
Translates to: LTSSLVKSRGGGLSPMNERRITG*IFQMFF
Trigger: GAAGAACATTTGGAAAATCAACCCAGTGATCCTACG...TTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp CTCAACGCTCACTCTCAAAACAGCCTTCCTGCCACAGCAAAACTTGTTTCCCAAACCCGTGAATACTTTTaGCATGATGATTTGAAGCAG +
Preference number: 5 (lower is better)
Translates to: LNAHSQNSLPATAKLVSQTREYF*HDDLKQ
Trigger: CTGCTTCAAATCATCATGCAAAAAGTATTCACGGGT...TTGGGAAACAAGTTTTGCTGTGGCAGGAAGGCTGTTTTGAGAGTGAGCGTTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp CACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATAAGAAACTGAGTCTCTaGCTAAAAGCAAGGATACAT +
Preference number: 5 (lower is better)
Translates to: HLFNKLISKVPGWGLVTNKKLSL*LKARIH
Trigger: ATGTATCCTTGCTTTTAGCAAGAGACTCAGTTTCTT...ATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp CACCTCTTTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATAGTAAAATTACTCAATaGCGGCATATGTCCTTAGGA +
Preference number: 5 (lower is better)
Translates to: HLFNKLISKVPGWGLVTNSKITQ*RHMSLG
Trigger: TCCTAAGGACATATGCCGCAATTGAGTAATTTTACT...ATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAAAGAGGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp GCACCAAAGGATGTTGACCCTTCTGAACGATTTGCATTGTGTTTTTCTCAAGCACCACTGGATAAGCTCTaGGGTTTACCATTGCCATTT +
Preference number: 5 (lower is better)
Translates to: APKDVDPSERFALCFSQAPLDKL*GLPLPF
Trigger: AAATGGCAATGGTAAACCCAAGAGCTTATCCAGTGG...TGCTTGAGAAAAACACAATGCAAATCGTTCAGAAGGGTCAACATCCTTTGGTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp TTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAATTCAAGTTCTTTTCATaGGCCATTGAATGGTACCAC +
Preference number: 5 (lower is better)
Translates to: LTSSLVKSRGGGLSPMNEFKFFS*AIEWYH
Trigger: GTGGTACCATTCAATGGCCAATGAAAAGAACTTGAA...TTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp GCACCAAAGGATGTTGACCCTTCTGAACGATTTGCATTGTGTTTTTCTCAAGCATTTTTGCATGATGATTaGAAGCAGCCAGGAGGCCAA +
Preference number: 5 (lower is better)
Translates to: APKDVDPSERFALCFSQAFLHDD*KQPGGQ
Trigger: TTGGCCTCCTGGCTGCTTCAAATCATCATGCAAAAA...TGCTTGAGAAAAACACAATGCAAATCGTTCAGAAGGGTCAACATCCTTTGGTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp TTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAAACCCGTGAATACTTTTaGCATGATGATTTGAAGCAG +
Preference number: 5 (lower is better)
Translates to: LTSSLVKSRGGGLSPMNETREYF*HDDLKQ
Trigger: CTGCTTCAAATCATCATGCAAAAAGTATTCACGGGT...TTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp TTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCTTTGTTTTGCTCGCTGATGCCTTTGTTTaGCTCCTCAGGTCGATTTCT +
Preference number: 5 (lower is better)
Translates to: FGYSVNSFGVRADAFVLLADAFV*LLRSIS
Trigger: AGAAATCGACCTGAGGAGCAAAACAAAGGCATCAGC...GAGCAAAACAAAGGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp AGAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCTTGACAGGCCCAGGCTaGACAGTGTCTTGGCACAAT +
Preference number: 5 (lower is better)
Translates to: RKEEYVLWHLFNKLISKVLTGPG*TVSWHN
Trigger: ATTGTGCCAAGACACTGTCAAGCCTGGGCCTGTCAA...GACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000394686.3
CDS-3UTR CAA 90 bp GTCAAAGGGCAATACTTTGTTCATCTTTCTAATCGTTTACACAAAATTTGGTCCTTGACATCCCAGGCTTaGACAGGCCCAGGCTTGACA +
Preference number: 5 (lower is better)
Translates to: VKGQYFVHLSNRLHKIWSLTSQA*TGPGLT
Trigger: TGTCAAGCCTGGGCCTGTCAAAGCCTGGGATGTCAA...GGACCAAATTTTGTGTAAACGATTAGAAAGATGAACAAAGTATTGCCCTTTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394686.3
CDS TCA 90 bp TGTTTTGCTCCTCAGGTCGATTTCTCATTGTCTTCACCAATCTTCTaGACCCGTGAATACTTTTTGCATGATGATTTGAAGCAGCCAGGA +
Preference number: 5 (lower is better)
Translates to: CFAPQVDFSLSSPIF*TREYFLHDDLKQPG
Trigger: TCCTGGCTGCTTCAAATCATCATGCAAAAAGTATTCACGGGTTCAGAAGATTGGTGAAGACAATGAGAAATCGACCTGAGGAGCAAAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS GCA 90 bp GTGTCTTGGCACAATGTTGTGGGAAGAATAAGCACAATGAAGAGGTaGCTCAGGAAGGTATTTTCAACAACAAACCTTCAACACCATGAA +
Preference number: 5 (lower is better)
Translates to: VSWHNVVGRISTMKR*LRKVFSTTNLQHHE
Trigger: TTCATGGTGTTGAAGGTTTGTTGTTGAAAATACCTTCCTGAGGCACCTCTTCATTGTGCTTATTCTTCCCACAACATTGTGCCAAGACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394686.3
CDS-3UTR CAA 90 bp GTTTGCATTCCAAGTCATAAAGTATATTGCCACAAGGGGGCACTGGTAATACAGCGTAGGATCACTGGGTaGATTTTCCAAATGTTCTTC +
Preference number: 5 (lower is better)
Translates to: VCIPSHKVYCHKGALVIQRRITG*IFQMFF
Trigger: GAAGAACATTTGGAAAATCAACCCAGTGATCCTACG...CTGTATTACCAGTGCCCCCTTGTGGCAATATACTTTATGACTTGGAATGCAAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp TTAACAAGCTCATTAGTAAAGTCCCGGGGTGGGGGCTTGTCACCAATGAATGAACTCTTGGGTTTACCATaGCCATTTTTGTTTTCTTCT +
Preference number: 5 (lower is better)
Translates to: LTSSLVKSRGGGLSPMNELLGLP*PFLFSS
Trigger: AGAAGAAAACAAAAATGGCAATGGTAAACCCAAGAG...TTCATTCATTGGTGACAAGCCCCCACCCCGGGACTTTACTAATGAGCTTGTTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp CAAAACTATACCTTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCCACTCTAGTGGAAATTaGTTCCTTGATTCAGTGGGC +
Preference number: 5 (lower is better)
Translates to: QNYTFGYSVNSFGVRADAHSSGN*FLDSVG
Trigger: GCCCACTGAATCAAGGAACAAATTTCCACTAGAGTG...GGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAAGGTATAGTTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp GAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCGTCCCACTATTGACTaGTATCTCAGAAACAGCCAC +
Preference number: 5 (lower is better)
Translates to: ERRNMFFGTSLTSSLVKSRPTID*YLRNSH
Trigger: GTGGCTGTTTCTGAGATACAAGTCAATAGTGGGACG...GGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp TTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCTTTGTTTTGCTCTTTTTGCATGATGATTaGAAGCAGCCAGGAGGCCAA +
Preference number: 5 (lower is better)
Translates to: FGYSVNSFGVRADAFVLLFLHDD*KQPGGQ
Trigger: TTGGCCTCCTGGCTGCTTCAAATCATCATGCAAAAA...GAGCAAAACAAAGGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp GAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCCACGGATCTCCCCCTaGCTAAACCTAATGCTAAAA +
Preference number: 5 (lower is better)
Translates to: ERRNMFFGTSLTSSLVKSPRISP*LNLMLK
Trigger: TTTTAGCATTAGGTTTAGCAAGGGGGAGATCCGTGG...GGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp GAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCTGGTGTGAACCTCAGTaGACACACACGTGTTTTCAG +
Preference number: 5 (lower is better)
Translates to: ERRNMFFGTSLTSSLVKSWCEPQ*THTCFQ
Trigger: CTGAAAACACGTGTGTGTCAACTGAGGTTCACACCA...GGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp GAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCGCGGCAATGTCCACATaGGCATCACAGGTGTTTTTA +
Preference number: 5 (lower is better)
Translates to: ERRNMFFGTSLTSSLVKSAAMST*ASQVFL
Trigger: TAAAAACACCTGTGATGCCAATGTGGACATTGCCGC...GGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp GCACCAAAGGATGTTGACCCTTCTGAACGATTTGCATTGTGTTTTTCTCAAGCATCCAAAAGAATGCAATaGGCTACCTCTGAAACCTTG +
Preference number: 5 (lower is better)
Translates to: APKDVDPSERFALCFSQASKRMQ*ATSETL
Trigger: CAAGGTTTCAGAGGTAGCCAATTGCATTCTTTTGGA...TGCTTGAGAAAAACACAATGCAAATCGTTCAGAAGGGTCAACATCCTTTGGTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp TTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCTTTGTTTTGCTCCTATCCCACAGCATCTaGCCAAATCATCATCCAAAT +
Preference number: 5 (lower is better)
Translates to: FGYSVNSFGVRADAFVLLLSHSI*PNHHPN
Trigger: ATTTGGATGATGATTTGGCAAGATGCTGTGGGATAG...GAGCAAAACAAAGGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000359079.8
CDS-3UTR CAA 90 bp GAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCAGTGGGCATAGCAATTaGGATATAGTCCGGGTACTT +
Preference number: 5 (lower is better)
Translates to: ERRNMFFGTSLTSSLVKSSGHSN*DIVRVL
Trigger: AAGTACCCGGACTATATCCAAATTGCTATGCCCACT...GGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp GAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCCACTCTAGTGGAAATTaGTTCCTTGATTCAGTGGGC +
Preference number: 5 (lower is better)
Translates to: ERRNMFFGTSLTSSLVKSHSSGN*FLDSVG
Trigger: GCCCACTGAATCAAGGAACAAATTTCCACTAGAGTG...GGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp AGAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCAGTGGGCATAGCAATTaGGATATAGTCCGGGTACTT +
Preference number: 5 (lower is better)
Translates to: RKEEYVLWHLFNKLISKVSGHSN*DIVRVL
Trigger: AAGTACCCGGACTATATCCAAATTGCTATGCCCACT...GACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp TTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCTTTGTTTTGCTCGTTGTCAAGACGAGGTaGAAAACTGCATATATGAAG +
Preference number: 5 (lower is better)
Translates to: FGYSVNSFGVRADAFVLLVVKTR*KTAYMK
Trigger: CTTCATATATGCAGTTTTCAACCTCGTCTTGACAAC...GAGCAAAACAAAGGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp CATAAAGTATATTGCCACAAGGGGGCACTGGTAATACAGGAAATAACCCTAATGTCTTTTCATTGGCCATaGAATGGTACCACCAAAACA +
Preference number: 5 (lower is better)
Translates to: HKVYCHKGALVIQEITLMSFHWP*NGTTKT
Trigger: TGTTTTGGTGGTACCATTCAATGGCCAATGAAAAGA...CATTAGGGTTATTTCCTGTATTACCAGTGCCCCCTTGTGGCAATATACTTTATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp CATAAAGTATATTGCCACAAGGGGGCACTGGTAATACAGGAAATAACCCTAATGAGAAGCAGCAAGGAATaGAGCCTTGTACATTTTTCT +
Preference number: 5 (lower is better)
Translates to: HKVYCHKGALVIQEITLMRSSKE*SLVHFS
Trigger: AGAAAAATGTACAAGGCTCAATTCCTTGCTGCTTCT...CATTAGGGTTATTTCCTGTATTACCAGTGCCCCCTTGTGGCAATATACTTTATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp TTTGGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCTTTGTTTTGCTCACCCGTGAATACTTTTaGCATGATGATTTGAAGCAG +
Preference number: 5 (lower is better)
Translates to: FGYSVNSFGVRADAFVLLTREYF*HDDLKQ
Trigger: CTGCTTCAAATCATCATGCAAAAAGTATTCACGGGT...GAGCAAAACAAAGGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp GAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCCTCTTTTCATTGGCCATaGAATGGTACCACCAAAACA +
Preference number: 5 (lower is better)
Translates to: ERRNMFFGTSLTSSLVKSSFHWP*NGTTKT
Trigger: TGTTTTGGTGGTACCATTCAATGGCCAATGAAAAGA...GGACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp GTCAAAGGGCAATACTTTGTTCATCTTTCTAATCGTTTACACAAAATTTGGTCCTTTTTGCATGATGATTaGAAGCAGCCAGGAGGCCAA +
Preference number: 5 (lower is better)
Translates to: VKGQYFVHLSNRLHKIWSFLHDD*KQPGGQ
Trigger: TTGGCCTCCTGGCTGCTTCAAATCATCATGCAAAAA...GGACCAAATTTTGTGTAAACGATTAGAAAGATGAACAAAGTATTGCCCTTTGAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp CTCAACATTAGGCAGTTCTATTTACACAGTGGCTGTAGATGTCCAGATATTTTACATGATTTTCAGTGTTaGGGTGTTGAAGTCAAGAGC +
Preference number: 5 (lower is better)
Translates to: LNIRQFYLHSGCRCPDILHDFQC*GVEVKS
Trigger: GCTCTTGACTTCAACACCCAAACACTGAAAATCATG...TAAAATATCTGGACATCTACAGCCACTGTGTAAATAGAACTGCCTAATGTTGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp AGAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCGTTGTCAAGACGAGGTaGAAAACTGCATATATGAAG +
Preference number: 5 (lower is better)
Translates to: RKEEYVLWHLFNKLISKVVVKTR*KTAYMK
Trigger: CTTCATATATGCAGTTTTCAACCTCGTCTTGACAAC...GACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp AGAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCTTCAAGTTCTTTTCATaGGCCATTGAATGGTACCAC +
Preference number: 5 (lower is better)
Translates to: RKEEYVLWHLFNKLISKVFKFFS*AIEWYH
Trigger: GTGGTACCATTCAATGGCCAATGAAAAGAACTTGAA...GACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS-3UTR CAA 90 bp CTCAACATTAGGCAGTTCTATTTACACAGTGGCTGTAGATGTCCAGATATTTTAACCCTTCTGAACGATTaGCATTGTGTTTTTCTCAAG +
Preference number: 5 (lower is better)
Translates to: LNIRQFYLHSGCRCPDILTLLND*HCVFLK
Trigger: CTTGAGAAAAACACAATGCAAATCGTTCAGAAGGGT...TAAAATATCTGGACATCTACAGCCACTGTGTAAATAGAACTGCCTAATGTTGAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp CAAGATGCCAGTAAATTAAGTAACAAATTCACAATTAGTTCAAGTGGACTCAGGTTCAAGCAGAATACCTaGTTCTTGCACAAGTGTTGC +
Preference number: 5 (lower is better)
Translates to: QDASKLSNKFTISSSGLRFKQNT*FLHKCC
Trigger: GCAACACTTGTGCAAGAACAAGGTATTCTGCTTGAA...CCTGAGTCCACTTGAACTAATTGTGAATTTGTTACTTAATTTACTGGCATCTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp GTCAAAGGGCAATACTTTGTTCATCTTTCTAATCGTTTACACAAAATTTGGTCCAAGTGGCACATTGGGTaGAAGCTCAACTTTTCTTTC +
Preference number: 5 (lower is better)
Translates to: VKGQYFVHLSNRLHKIWSKWHIG*KLNFSF
Trigger: GAAAGAAAAGTTGAGCTTCAACCCAATGTGCCACTT...GGACCAAATTTTGTGTAAACGATTAGAAAGATGAACAAAGTATTGCCCTTTGAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000394684.8
CDS-3UTR CAA 90 bp AGAAAGGAGGAATATGTTCTTTGGCACCTCTTTAACAAGCTCATTAGTAAAGTCAAGAAGCTTGTGATTTaGAAACTCCATTTCACAGTG +
Preference number: 5 (lower is better)
Translates to: RKEEYVLWHLFNKLISKVKKLVI*KLHFTV
Trigger: CACTGTGAAATGGAGTTTCAAAATCACAAGCTTCTT...GACTTTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTCT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000359079.8
CDS-3UTR CAA 90 bp GTCAAAGGGCAATACTTTGTTCATCTTTCTAATCGTTTACACAAAATTTGGTCCTCCACTTACAGCATCTaGCCAAATCATCATCCAAAT +
Preference number: 5 (lower is better)
Translates to: VKGQYFVHLSNRLHKIWSSTYSI*PNHHPN
Trigger: ATTTGGATGATGATTTGGCAAGATGCTGTAAGTGGA...GGACCAAATTTTGTGTAAACGATTAGAAAGATGAACAAAGTATTGCCCTTTGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394686.3
CDS-3UTR CAA 90 bp GTCAAAGGGCAATACTTTGTTCATCTTTCTAATCGTTTACACAAAATTTGGTCCCTCTTGGGTTTACCATaGCCATTTTTGTTTTCTTCT +
Preference number: 5 (lower is better)
Translates to: VKGQYFVHLSNRLHKIWSLLGLP*PFLFSS
Trigger: AGAAGAAAACAAAAATGGCAATGGTAAACCCAAGAG...GGACCAAATTTTGTGTAAACGATTAGAAAGATGAACAAAGTATTGCCCTTTGAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS GCA 72 bp CCACAGGATGCAGCTCCGTCGGCCCGGTGGCAGCAGTaGCCGTTCCTGCTGCCGTGGCTCTCCTGGCGCAGA +
Preference number: 6 (lower is better)
Translates to: PQDAAPSARWQQ*PFLLPWLSWRR
Trigger: TCTGCGCCAGGAGAGCCACGGCAGCAGGAACGGGCACTGCTGCCACCGGGCCGACGGAGCTGCATCCTGTGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000394684.8
ENST00000506462.5
CDS CCA 72 bp GCCCGTTCCTGCTGCCGTGGCTCTCCTGGCGCAGAGTaGAGCTCGAAAAACCTGCGCGACTTCTTAAGAAGA +
Preference number: 6 (lower is better)
Translates to: ARSCCRGSPGAE*SSKNLRDFLRR
Trigger: TCTTCTTAAGAAGTCGCGCAGGTTTTTCGAGCTCCACTCTGCGCCAGGAGAGCCACGGCAGCAGGAACGGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000394684.8
ENST00000506462.5
CDS CAA 90 bp TTGGTCCTTGCAGCAGTCAACACTCCCAGTCTCTGGCAGGTCCTTTaGGAGAAGAGTGTTATAGGGCCACAGGATGCAGCTCCGTCGGCC +
Preference number: 6 (lower is better)
Translates to: LVLAAVNTPSLWQVL*EKSVIGPQDAAPSA
Trigger: GGCCGACGGAGCTGCATCCTGTGGCCCTATAACACTCTTCTCCAAAAGGACCTGCCAGAGACTGGGAGTGTTGACTGCTGCAAGGACCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000394684.8
ENST00000506462.5
CDS CAA 90 bp TTGGTCCTTGCAGCAGTCAACACTCCCAGTCTCTGGCAGGTCCTTTaGGAGAAGAGTGTTATAGGGCCACAGGATGCAGCTCCGCTGGTG +
Preference number: 6 (lower is better)
Translates to: LVLAAVNTPSLWQVL*EKSVIGPQDAAPLV
Trigger: CACCAGCGGAGCTGCATCCTGTGGCCCTATAACACTCTTCTCCAAAAGGACCTGCCAGAGACTGGGAGTGTTGACTGCTGCAAGGACCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000503862.5
ENST00000515332.5
CDS CCA 72 bp CACTGTTTCCAGATGGTAGCACAGCAATTCCCACCTTaGTCCTTGCAGCAGTCAACACTCCCAGTCTCTGGC +
Preference number: 6 (lower is better)
Translates to: HCFQMVAQQFPP*SLQQSTLPVSG
Trigger: GCCAGAGACTGGGAGTGTTGACTGCTGCAAGGACCAAGGTGGGAATTGCTGTGCTACCATCTGGAAACAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000506462.5
CDS CAA 72 bp GCAGCAGTCAACACTCCCAGTCTCTGGCAGGTCCTTTaGGAGAAGAGTGTTATAGGGCCACAGGATGCAGCT +
Preference number: 6 (lower is better)
Translates to: AAVNTPSLWQVL*EKSVIGPQDAA
Trigger: AGCTGCATCCTGTGGCCCTATAACACTCTTCTCCAAAAGGACCTGCCAGAGACTGGGAGTGTTGACTGCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000394684.8
ENST00000503862.5
ENST00000506462.5
ENST00000515332.5
CDS CAA 72 bp CCACTGTTTCCAGATGGTAGCACAGCAATTCCCACCTaGGTCCTTGCAGCAGTCAACACTCCCAGTCTCTGG +
Preference number: 6 (lower is better)
Translates to: PLFPDGSTAIPT*VLAAVNTPSLW
Trigger: CCAGAGACTGGGAGTGTTGACTGCTGCAAGGACCAAGGTGGGAATTGCTGTGCTACCATCTGGAAACAGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000506462.5
CDS CAA 90 bp TCCCACTGTTTCCAGATGGTAGCACAGCAATTCCCACCTTGGTCCTaGCAGCAGTCAACACTCCCAGTCTCTGGCAGGTCCTTTTGGAGA +
Preference number: 6 (lower is better)
Translates to: SHCFQMVAQQFPPWS*QQSTLPVSGRSFWR
Trigger: TCTCCAAAAGGACCTGCCAGAGACTGGGAGTGTTGACTGCTGCAAGGACCAAGGTGGGAATTGCTGTGCTACCATCTGGAAACAGTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000506462.5
CDS CCA 72 bp ACCTTGGTCCTTGCAGCAGTCAACACTCCCAGTCTCTaGCAGGTCCTTTTGGAGAAGAGTGTTATAGGGCCA +
Preference number: 6 (lower is better)
Translates to: TLVLAAVNTPSL*QVLLEKSVIGP
Trigger: TGGCCCTATAACACTCTTCTCCAAAAGGACCTGCCAGAGACTGGGAGTGTTGACTGCTGCAAGGACCAAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000394684.8
ENST00000503862.5
ENST00000506462.5
ENST00000515332.5
CDS CAA 90 bp GTTACTATCCCACTGTTTCCAGATGGTAGCACAGCAATTCCCACCTaGGTCCTTGCAGCAGTCAACACTCCCAGTCTCTGGCAGGTCCTT +
Preference number: 6 (lower is better)
Translates to: VTIPLFPDGSTAIPT*VLAAVNTPSLWQVL
Trigger: AAGGACCTGCCAGAGACTGGGAGTGTTGACTGCTGCAAGGACCAAGGTGGGAATTGCTGTGCTACCATCTGGAAACAGTGGGATAGTAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000506462.5
CDS CAA 90 bp GCCTTTGACATCCCAGGCTTTGACAGGCCCAGGCTTGACAGTGTCTaGGCACAATGTTGTGGGAAGAATAAGCACAATGAAGAGGTGCCT +
Preference number: 6 (lower is better)
Translates to: AFDIPGFDRPRLDSV*AQCCGKNKHNEEVP
Trigger: AGGCACCTCTTCATTGTGCTTATTCTTCCCACAACATTGTGCCAAGACACTGTCAAGCCTGGGCCTGTCAAAGCCTGGGATGTCAAAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000394686.3
CDS CAA 90 bp GAAAGACCCAGGCCTTTGACATCCCAGGCTTTGACAGGCCCAGGCTaGACAGTGTCTTGGCACAATGTTGTGGGAAGAATAAGCACAATG +
Preference number: 6 (lower is better)
Translates to: ERPRPLTSQALTGPG*TVSWHNVVGRISTM
Trigger: CATTGTGCTTATTCTTCCCACAACATTGTGCCAAGACACTGTCAAGCCTGGGCCTGTCAAAGCCTGGGATGTCAAAGGCCTGGGTCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000394686.3
CDS TCA 72 bp TGCAGAGCCCCCAGCTATCAATACATTACAGCAGGATaGGAAAGACCCAGGCCTTTGACATCCCAGGCTTTG +
Preference number: 6 (lower is better)
Translates to: CRAPSYQYITAG*ERPRPLTSQAL
Trigger: CAAAGCCTGGGATGTCAAAGGCCTGGGTCTTTCTCATCCTGCTGTAATGTATTGATAGCTGGGGGCTCTGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000394686.3
CDS CCA 72 bp TCCCAGGCTTTGACAGGCCCAGGCTTGACAGTGTCTTaGCACAATGTTGTGGGAAGAATAAGCACAATGAAG +
Preference number: 6 (lower is better)
Translates to: SQALTGPGLTVS*HNVVGRISTMK
Trigger: CTTCATTGTGCTTATTCTTCCCACAACATTGTGCCAAGACACTGTCAAGCCTGGGCCTGTCAAAGCCTGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000394686.3
CDS CAA 72 bp ATCCCAGGCTTTGACAGGCCCAGGCTTGACAGTGTCTaGGCACAATGTTGTGGGAAGAATAAGCACAATGAA +
Preference number: 6 (lower is better)
Translates to: IPGFDRPRLDSV*AQCCGKNKHNE
Trigger: TTCATTGTGCTTATTCTTCCCACAACATTGTGCCAAGACACTGTCAAGCCTGGGCCTGTCAAAGCCTGGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000394686.3
CDS CAA 90 bp ACCCTCTCATGTACAACTGTGATCATGACGGTTGTCAAGACGAGGTaGAAAACTGCATATATGAAGGCAATGCCCGTTTTCCACCACTCT +
Preference number: 6 (lower is better)
Translates to: TLSCTTVIMTVVKTR*KTAYMKAMPVFHHS
Trigger: AGAGTGGTGGAAAACGGGCATTGCCTTCATATATGCAGTTTTCAACCTCGTCTTGACAACCGTCATGATCACAGTTGTACATGAGAGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS GCA 72 bp ATAAGCAATGATCACATCGATAGTGTAGTGTTCGTGTaGTACAAGAATGCAGATGATCCCGGCAGCACTCAG +
Preference number: 6 (lower is better)
Translates to: ISNDHIDSVVFV*YKNADDPGSTQ
Trigger: CTGAGTGCTGCCGGGATCATCTGCATTCTTGTAGCACACGAACACTACACTATCGATGTGATCATTGCTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
ENST00000503862.5
CDS CAA 72 bp TGTACAACTGTGATCATGACGGTTGTCAAGACGAGGTaGAAAACTGCATATATGAAGGCAATGCCCGTTTTC +
Preference number: 6 (lower is better)
Translates to: CTTVIMTVVKTR*KTAYMKAMPVF
Trigger: GAAAACGGGCATTGCCTTCATATATGCAGTTTTCAACCTCGTCTTGACAACCGTCATGATCACAGTTGTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS CAA 90 bp GGTTACAGCGTTAACTCTTTTGGTGTAAGAGCTGATGCCTTTGTTTaGCTCCTCAGGTCGATTTCTCATTGTCTTCACCAATCTTCTGAA +
Preference number: 6 (lower is better)
Translates to: GYSVNSFGVRADAFV*LLRSISHCLHQSSE
Trigger: TTCAGAAGATTGGTGAAGACAATGAGAAATCGACCTGAGGAGCAAAACAAAGGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS CCA 72 bp AGAGGAAGTCTCCACATAAGATATGTGATCCAGTTATaGACAATCCACCACCAGAAATCAATCGTAGAATCC +
Preference number: 6 (lower is better)
Translates to: RGSLHIRYVIQL*TIHHQKSIVES
Trigger: GGATTCTACGATTGATTTCTGGTGGTGGATTGTCCATAACTGGATCACATATCTTATGTGGAGACTTCCTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
ENST00000503862.5
CDS CAA 72 bp GTTAACTCTTTTGGTGTAAGAGCTGATGCCTTTGTTTaGCTCCTCAGGTCGATTTCTCATTGTCTTCACCAA +
Preference number: 6 (lower is better)
Translates to: VNSFGVRADAFV*LLRSISHCLHQ
Trigger: TTGGTGAAGACAATGAGAAATCGACCTGAGGAGCAAAACAAAGGCATCAGCTCTTACACCAAAAGAGTTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS TCA 72 bp CCTCAGGTCGATTTCTCATTGTCTTCACCAATCTTCTaGACCCGTGAATACTTTTTGCATGATGATTTGAAG +
Preference number: 6 (lower is better)
Translates to: PQVDFSLSSPIF*TREYFLHDDLK
Trigger: CTTCAAATCATCATGCAAAAAGTATTCACGGGTTCAGAAGATTGGTGAAGACAATGAGAAATCGACCTGAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000359079.8
ENST00000394684.8
ENST00000394686.3
CDS GCA 72 bp CACAATGTTGTGGGAAGAATAAGCACAATGAAGAGGTaGCTCAGGAAGGTATTTTCAACAACAAACCTTCAA +
Preference number: 6 (lower is better)
Translates to: HNVVGRISTMKR*LRKVFSTTNLQ
Trigger: TTGAAGGTTTGTTGTTGAAAATACCTTCCTGAGGCACCTCTTCATTGTGCTTATTCTTCCCACAACATTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000394686.3