Pregenerated sensors for SF1-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000269038Ensembl transcript IDs: ENST00000594089.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GACCCAAGGGTCGATGGTGAAGGGAGACGGGTGGAGAGGCGGTTTTaGTCCATCTACGCATGCGCACTTCCTGCTCCAGGACTCCCCCGC | + |
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Preference number: 5 (lower is better) Translates to: DPRVDGEGRRVERRF*SIYACALPAPGLPR Trigger: GCGGGGGAGTCCTGGAGCAGGAAGTGCGCATGCGTAGATGGAGCAAAACCGCCTCTCCACCCGTCTCCCTTCACCATCGACCCTTGGGTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000594089.1 |
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| CDS GCA 90 bp | GGTGAAGGGAGACGGGTGGAGAGGCGGTTTTGCTCCATCTACGCATaGGCACTTCCTGCTCCAGGACTCCCCCGCCGTAAATCTCGTTCC | + |
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Preference number: 5 (lower is better) Translates to: GEGRRVERRFCSIYA*ALPAPGLPRRKSRS Trigger: GGAACGAGATTTACGGCGGGGGAGTCCTGGAGCAGGAAGTGCGCATGCGTAGATGGAGCAAAACCGCCTCTCCACCCGTCTCCCTTCACC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000594089.1 |
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| CDS CCA 90 bp | GGGCTTCCTTGCTGGACCCAAGGGTCGATGGTGAAGGGAGACGGGTaGAGAGGCGGTTTTGCTCCATCTACGCATGCGCACTTCCTGCTC | + |
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Preference number: 5 (lower is better) Translates to: GLPCWTQGSMVKGDG*RGGFAPSTHAHFLL Trigger: GAGCAGGAAGTGCGCATGCGTAGATGGAGCAAAACCGCCTCTCCACCCGTCTCCCTTCACCATCGACCCTTGGGTCCAGCAAGGAAGCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000594089.1 |
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| CDS TCA 90 bp | CCCTGCTCCCGCCCCAAGGTTCTGCGTTACCATGGGAACAAAGGTTaGCGTCACTTAGGGCTTCCTTGCTGGACCCAAGGGTCGATGGTG | + |
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Preference number: 5 (lower is better) Translates to: PCSRPKVLRYHGNKG*RHLGLPCWTQGSMV Trigger: CACCATCGACCCTTGGGTCCAGCAAGGAAGCCCTAAGTGACGTCAACCTTTGTTCCCATGGTAACGCAGAACCTTGGGGCGGGAGCAGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000594089.1 |
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| CDS CCA 72 bp | TGCTGGACCCAAGGGTCGATGGTGAAGGGAGACGGGTaGAGAGGCGGTTTTGCTCCATCTACGCATGCGCAC | + |
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Preference number: 6 (lower is better) Translates to: CWTQGSMVKGDG*RGGFAPSTHAH Trigger: GTGCGCATGCGTAGATGGAGCAAAACCGCCTCTCCACCCGTCTCCCTTCACCATCGACCCTTGGGTCCAGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000594089.1 |
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| CDS GCA 72 bp | GTCGATGGTGAAGGGAGACGGGTGGAGAGGCGGTTTTaGTCCATCTACGCATGCGCACTTCCTGCTCCAGGA | + |
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Preference number: 6 (lower is better) Translates to: VDGEGRRVERRF*SIYACALPAPG Trigger: TCCTGGAGCAGGAAGTGCGCATGCGTAGATGGAGCAAAACCGCCTCTCCACCCGTCTCCCTTCACCATCGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000594089.1 |
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| CDS CAA 90 bp | CCCCTGCTCCCGCCCCAAGGTTCTGCGTTACCATGGGAACAAAGGTaGACGTCACTTAGGGCTTCCTTGCTGGACCCAAGGGTCGATGGT | + |
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Preference number: 6 (lower is better) Translates to: PLLPPQGSALPWEQR*TSLRASLLDPRVDG Trigger: ACCATCGACCCTTGGGTCCAGCAAGGAAGCCCTAAGTGACGTCAACCTTTGTTCCCATGGTAACGCAGAACCTTGGGGCGGGAGCAGGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000594089.1 |
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| CDS CCA 72 bp | CCTCCCCTGCTCCCGCCCCAAGGTTCTGCGTTACCATaGGAACAAAGGTTGACGTCACTTAGGGCTTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: PPLLPPQGSALP*EQRLTSLRASL Trigger: CAAGGAAGCCCTAAGTGACGTCAACCTTTGTTCCCATGGTAACGCAGAACCTTGGGGCGGGAGCAGGGGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000594089.1 |
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| CDS CAA 90 bp | TCTGCGTTACCATGGGAACAAAGGTTGACGTCACTTAGGGCTTCCTaGCTGGACCCAAGGGTCGATGGTGAAGGGAGACGGGTGGAGAGG | + |
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Preference number: 6 (lower is better) Translates to: SALPWEQRLTSLRAS*LDPRVDGEGRRVER Trigger: CCTCTCCACCCGTCTCCCTTCACCATCGACCCTTGGGTCCAGCAAGGAAGCCCTAAGTGACGTCAACCTTTGTTCCCATGGTAACGCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000594089.1 |
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| CDS TCA 72 bp | CGCCCCAAGGTTCTGCGTTACCATGGGAACAAAGGTTaGCGTCACTTAGGGCTTCCTTGCTGGACCCAAGGG | + |
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Preference number: 6 (lower is better) Translates to: RPKVLRYHGNKG*RHLGLPCWTQG Trigger: CCCTTGGGTCCAGCAAGGAAGCCCTAAGTGACGTCAACCTTTGTTCCCATGGTAACGCAGAACCTTGGGGCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000594089.1 |
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| CDS CAA 72 bp | CCATGGGAACAAAGGTTGACGTCACTTAGGGCTTCCTaGCTGGACCCAAGGGTCGATGGTGAAGGGAGACGG | + |
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Preference number: 6 (lower is better) Translates to: PWEQRLTSLRAS*LDPRVDGEGRR Trigger: CCGTCTCCCTTCACCATCGACCCTTGGGTCCAGCAAGGAAGCCCTAAGTGACGTCAACCTTTGTTCCCATGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000594089.1 |
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| CDS CAA 72 bp | CCGCCCCAAGGTTCTGCGTTACCATGGGAACAAAGGTaGACGTCACTTAGGGCTTCCTTGCTGGACCCAAGG | + |
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Preference number: 6 (lower is better) Translates to: PPQGSALPWEQR*TSLRASLLDPR Trigger: CCTTGGGTCCAGCAAGGAAGCCCTAAGTGACGTCAACCTTTGTTCCCATGGTAACGCAGAACCTTGGGGCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000594089.1 |
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