RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SERTM1 (Homo sapiens)

Ensembl gene IDs: ENSG00000180440

Ensembl transcript IDs: ENST00000315190.4

Found 105 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAGCCCCTGCCACCCGCCCGCCGAGTTCAGACATACTCTGCTGCCTaGAGCACGGCAGCTCCTAGGATCCCTAAAGCTCCCAGCAGCTAC +
Preference number: 1 (lower is better)
Translates to: QPLPPARRVQTYSAA*STAAPRIPKAPSSY
Trigger: GTAGCTGCTGGGAGCTTTAGGGATCCTAGGAGCTGCCGTGCTGCAGGCAGCAGAGTATGTCTGAACTCGGCGGGCGGGTGGCAGGGGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR GCA 90 bp TCCATGTCTGAGCTCACATGTGTGCCTAATTTCACAGACAGCCCCTaGCACCCGCCCGCCGAGTTCAGACATACTCTGCTGCCTGCAGCA +
Preference number: 1 (lower is better)
Translates to: SMSELTCVPNFTDSP*HPPAEFRHTLLPAA
Trigger: TGCTGCAGGCAGCAGAGTATGTCTGAACTCGGCGGGCGGGTGGCAGGGGCTGTCTGTGAAATTAGGCACACATGTGAGCTCAGACATGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR GCA 90 bp GGGCAGCTTGAGTTCCTCCACATTCCATGTCTGAGCTCACATGTGTaGCTAATTTCACAGACAGCCCCTGCCACCCGCCCGCCGAGTTCA +
Preference number: 1 (lower is better)
Translates to: GQLEFLHIPCLSSHV*LISQTAPATRPPSS
Trigger: TGAACTCGGCGGGCGGGTGGCAGGGGCTGTCTGTGAAATTAGGCACACATGTGAGCTCAGACATGGAATGTGGAGGAACTCAAGCTGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR TCA 90 bp GGAGAGGCCACCTCAGATGAGCCTACGGCGTCCAACAAAGTAGAATaGACTGACTTACCTGAAGAAGCCCAGTCTAGATTCATCAAGCCA +
Preference number: 1 (lower is better)
Translates to: GEATSDEPTASNKVE*TDLPEEAQSRFIKP
Trigger: TGGCTTGATGAATCTAGACTGGGCTTCTTCAGGTAAGTCAGTTCATTCTACTTTGTTGGACGCCGTAGGCTCATCTGAGGTGGCCTCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR TCA 90 bp CCATGGGAAGACCGTGGCGTGTTGATGCAGTGGCCTCCTGTAGGTTaGATAAGTTCAGTGTTTACCCTGTGGGCCATTTATTTTCAAAAT +
Preference number: 1 (lower is better)
Translates to: PWEDRGVLMQWPPVG*ISSVFTLWAIYFQN
Trigger: ATTTTGAAAATAAATGGCCCACAGGGTAAACACTGAACTTATTCAACCTACAGGAGGCCACTGCATCAACACGCCACGGTCTTCCCATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR TCA 90 bp GACTTACCTGAAGAAGCCCAGTCTAGATTCATCAAGCCATTTGTGTaGAATTCTGCACCTTGGGGTTTGCACACATTTCCACCAACATCG +
Preference number: 1 (lower is better)
Translates to: DLPEEAQSRFIKPFV*NSAPWGLHTFPPTS
Trigger: CGATGTTGGTGGAAATGTGTGCAAACCCCAAGGTGCAGAATTTCACACAAATGGCTTGATGAATCTAGACTGGGCTTCTTCAGGTAAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR GCA 90 bp CTAGATTCATCAAGCCATTTGTGTGAAATTCTGCACCTTGGGGTTTaGACACATTTCCACCAACATCGGTGTCTCCATCCCCAAATGAAA +
Preference number: 1 (lower is better)
Translates to: LDSSSHLCEILHLGV*THFHQHRCLHPQMK
Trigger: TTTCATTTGGGGATGGAGACACCGATGTTGGTGGAAATGTGTGCAAACCCCAAGGTGCAGAATTTCACACAAATGGCTTGATGAATCTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR-3UTR GCA 90 bp TTTCACAGACAGCCCCTGCCACCCGCCCGCCGAGTTCAGACATACTCTGCTGCCCTGCACCTTGGGGTTTaGACACATTTCCACCAACAT +
Preference number: 2 (lower is better)
Translates to: FHRQPLPPARRVQTYSAALHLGV*THFHQH
Trigger: ATGTTGGTGGAAATGTGTGCAAACCCCAAGGTGCAG...GGCAGCAGAGTATGTCTGAACTCGGCGGGCGGGTGGCAGGGGCTGTCTGTGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR-3UTR GCA 90 bp GCCGAGTTCAGACATACTCTGCTGCCTGCAGCACGGCAGCTCCTAGGATCCCTAAGGGGATGTCAAAACTaGTGCCACACTCAAGGACTC +
Preference number: 2 (lower is better)
Translates to: AEFRHTLLPAARQLLGSLRGCQN*CHTQGL
Trigger: GAGTCCTTGAGTGTGGCAGCAGTTTTGACATCCCCT...TAGGGATCCTAGGAGCTGCCGTGCTGCAGGCAGCAGAGTATGTCTGAACTCGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR-3UTR GCA 90 bp GCCTGCAGCACGGCAGCTCCTAGGATCCCTAAAGCTCCCAGCAGCTACACAACTTCTTTCATGAGGCAATaGCTCACGGGACACTTCCGT +
Preference number: 2 (lower is better)
Translates to: ACSTAAPRIPKAPSSYTTSFMRQ*LTGHFR
Trigger: ACGGAAGTGTCCCGTGAGGCATTGCCTCATGAAAGA...AGTTGTGTAGCTGCTGGGAGCTTTAGGGATCCTAGGAGCTGCCGTGCTGCAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR-3UTR GCA 90 bp GCCGAGTTCAGACATACTCTGCTGCCTGCAGCACGGCAGCTCCTAGGATCCCTAGGATGTCAAAACTGCTaGCACACTCAAGGACTCTTC +
Preference number: 2 (lower is better)
Translates to: AEFRHTLLPAARQLLGSLGCQNC*HTQGLF
Trigger: GAAGAGTCCTTGAGTGTGGCAGCAGTTTTGACATCC...TAGGGATCCTAGGAGCTGCCGTGCTGCAGGCAGCAGAGTATGTCTGAACTCGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR-3UTR GCA 90 bp GCCGAGTTCAGACATACTCTGCTGCCTGCAGCACGGCAGCTCCTAGGATCCCTAATTTGTGTGAAATTCTaGACCTTGGGGTTTGCACAC +
Preference number: 2 (lower is better)
Translates to: AEFRHTLLPAARQLLGSLICVKF*TLGFAH
Trigger: GTGTGCAAACCCCAAGGTGCAGAATTTCACACAAAT...TAGGGATCCTAGGAGCTGCCGTGCTGCAGGCAGCAGAGTATGTCTGAACTCGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR-3UTR TCA 90 bp CTGCAGGCTCAGTTGATTTCACGGCTTTGTAAAAGAAATGAAGTGCGAGTCCATAGAGGCCACCTCAGATaGGCCTACGGCGTCCAACAA +
Preference number: 2 (lower is better)
Translates to: LQAQLISRLCKRNEVRVHRGHLR*AYGVQQ
Trigger: TTGTTGGACGCCGTAGGCTCATCTGAGGTGGCCTCT...ATGGACTCGCACTTCATTTCTTTTACAAAGCCGTGAAATCAACTGAGCCTGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR CAA 90 bp GCCATGGGAAGACCGTGGCGTGTTGATGCAGTGGCCTCCTGTAGGTaGAATAAGTTCAGTGTTTACCCTGTGGGCCATTTATTTTCAAAA +
Preference number: 2 (lower is better)
Translates to: AMGRPWRVDAVASCR*NKFSVYPVGHLFSK
Trigger: TTTTGAAAATAAATGGCCCACAGGGTAAACACTGAACTTATTCAACCTACAGGAGGCCACTGCATCAACACGCCACGGTCTTCCCATGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR CAA 90 bp GAACTGACTTACCTGAAGAAGCCCAGTCTAGATTCATCAAGCCATTaGTGTGAAATTCTGCACCTTGGGGTTTGCACACATTTCCACCAA +
Preference number: 2 (lower is better)
Translates to: ELTYLKKPSLDSSSH*CEILHLGVCTHFHQ
Trigger: TTGGTGGAAATGTGTGCAAACCCCAAGGTGCAGAATTTCACACAAATGGCTTGATGAATCTAGACTGGGCTTCTTCAGGTAAGTCAGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR-3UTR GCA 90 bp AAACAACATGAATTCATCTCAAGTTGTACAATCTGTTACCTTGGCAAGCTTCTAAGGGCAGCAACTCTGTaGTGGTCTTATGGTGTTTGG +
Preference number: 2 (lower is better)
Translates to: KQHEFISSCTICYLGKLLRAATL*WSYGVW
Trigger: CCAAACACCATAAGACCAGCACAGAGTTGCTGCCCT...TAGAAGCTTGCCAAGGTAACAGATTGTACAACTTGAGATGAATTCATGTTGTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR-3UTR TCA 90 bp AAACAACATGAATTCATCTCAAGTTGTACAATCTGTTACCTTGGCAAGCTTCTAATCAAGCCATTTGTGTaGAATTCTGCACCTTGGGGT +
Preference number: 2 (lower is better)
Translates to: KQHEFISSCTICYLGKLLIKPFV*NSAPWG
Trigger: ACCCCAAGGTGCAGAATTTCACACAAATGGCTTGAT...TAGAAGCTTGCCAAGGTAACAGATTGTACAACTTGAGATGAATTCATGTTGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR-3UTR TCA 90 bp AAACAACATGAATTCATCTCAAGTTGTACAATCTGTTACCTTGGCAAGCTTCTATTCTGCAGGCTCAGTTaGTTTCACGGCTTTGTAAAA +
Preference number: 2 (lower is better)
Translates to: KQHEFISSCTICYLGKLLFCRLS*FHGFVK
Trigger: TTTTACAAAGCCGTGAAATCAACTGAGCCTGCAGAA...TAGAAGCTTGCCAAGGTAACAGATTGTACAACTTGAGATGAATTCATGTTGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR-3UTR CAA 90 bp CCACCCGCCCGCCGAGTTCAGACATACTCTGCTGCCTGCAGCACGGCAGCTCCTAGGTCAGACTTGATTTaGCCAGTTTCTGCAGGCTCA +
Preference number: 3 (lower is better)
Translates to: PPARRVQTYSAACSTAAPRSDLI*PVSAGS
Trigger: TGAGCCTGCAGAAACTGGCAAAATCAAGTCTGACCT...AGGAGCTGCCGTGCTGCAGGCAGCAGAGTATGTCTGAACTCGGCGGGCGGGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR GCA 72 bp GAGCTCACATGTGTGCCTAATTTCACAGACAGCCCCTaGCACCCGCCCGCCGAGTTCAGACATACTCTGCTG +
Preference number: 3 (lower is better)
Translates to: ELTCVPNFTDSP*HPPAEFRHTLL
Trigger: CAGCAGAGTATGTCTGAACTCGGCGGGCGGGTGGCAGGGGCTGTCTGTGAAATTAGGCACACATGTGAGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR GCA 72 bp GAGTTCCTCCACATTCCATGTCTGAGCTCACATGTGTaGCTAATTTCACAGACAGCCCCTGCCACCCGCCCG +
Preference number: 3 (lower is better)
Translates to: EFLHIPCLSSHV*LISQTAPATRP
Trigger: CGGGCGGGTGGCAGGGGCTGTCTGTGAAATTAGGCACACATGTGAGCTCAGACATGGAATGTGGAGGAACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR-3UTR CAA 90 bp GCCTGCAGCACGGCAGCTCCTAGGATCCCTAAAGCTCCCAGCAGCTACACAACTCTACATAGGTCAGACTaGATTTTGCCAGTTTCTGCA +
Preference number: 3 (lower is better)
Translates to: ACSTAAPRIPKAPSSYTTLHRSD*ILPVSA
Trigger: TGCAGAAACTGGCAAAATCAAGTCTGACCTATGTAG...AGTTGTGTAGCTGCTGGGAGCTTTAGGGATCCTAGGAGCTGCCGTGCTGCAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR TCA 72 bp AGAAGCAGGTCTACACCAAAAGGATCATTTCTTTCATaGGGCAATGCCTCACGGGACACTTCCGTAAGGGGA +
Preference number: 3 (lower is better)
Translates to: RSRSTPKGSFLS*GNASRDTSVRG
Trigger: TCCCCTTACGGAAGTGTCCCGTGAGGCATTGCCTCATGAAAGAAATGATCCTTTTGGTGTAGACCTGCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR-3UTR CAA 90 bp CTGCAGGCTCAGTTGATTTCACGGCTTTGTAAAAGAAATGAAGTGCGAGTCCATTCTGCACCTTGGGGTTaGCACACATTTCCACCAACA +
Preference number: 3 (lower is better)
Translates to: LQAQLISRLCKRNEVRVHSAPWG*HTFPPT
Trigger: TGTTGGTGGAAATGTGTGCAAACCCCAAGGTGCAGA...ATGGACTCGCACTTCATTTCTTTTACAAAGCCGTGAAATCAACTGAGCCTGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR TCA 72 bp ACCTCAGATGAGCCTACGGCGTCCAACAAAGTAGAATaGACTGACTTACCTGAAGAAGCCCAGTCTAGATTC +
Preference number: 3 (lower is better)
Translates to: TSDEPTASNKVE*TDLPEEAQSRF
Trigger: GAATCTAGACTGGGCTTCTTCAGGTAAGTCAGTTCATTCTACTTTGTTGGACGCCGTAGGCTCATCTGAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR-3UTR CAA 90 bp GATACCCTGAGGACAGATCATACTCAGATTGTTCTGTTGTGTGGCAAATTTGTCGTGAAATTCTGCACCTaGGGGTTTGCACACATTTCC +
Preference number: 3 (lower is better)
Translates to: DTLRTDHTQIVLLCGKFVVKFCT*GFAHIS
Trigger: GGAAATGTGTGCAAACCCCAAGGTGCAGAATTTCAC...GACAAATTTGCCACACAACAGAACAATCTGAGTATGATCTGTCCTCAGGGTATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR TCA 72 bp GAAGAAGCCCAGTCTAGATTCATCAAGCCATTTGTGTaGAATTCTGCACCTTGGGGTTTGCACACATTTCCA +
Preference number: 3 (lower is better)
Translates to: EEAQSRFIKPFV*NSAPWGLHTFP
Trigger: TGGAAATGTGTGCAAACCCCAAGGTGCAGAATTTCACACAAATGGCTTGATGAATCTAGACTGGGCTTCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR TCA 72 bp CCTAGGATCCCTAAAGCTCCCAGCAGCTACACAACTTaGGTGCCTACAATTTTTAATACAAACTCACATCCT +
Preference number: 3 (lower is better)
Translates to: PRIPKAPSSYTT*VPTIFNTNSHP
Trigger: AGGATGTGAGTTTGTATTAAAAATTGTAGGCACTCAAGTTGTGTAGCTGCTGGGAGCTTTAGGGATCCTAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR-3UTR CAA 90 bp GATACCCTGAGGACAGATCATACTCAGATTGTTCTGTTGTGTGGCAAATTTGTCTTTCTGCAGGCTCAGTaGATTTCACGGCTTTGTAAA +
Preference number: 3 (lower is better)
Translates to: DTLRTDHTQIVLLCGKFVFLQAQ*ISRLCK
Trigger: TTTACAAAGCCGTGAAATCAACTGAGCCTGCAGAAA...GACAAATTTGCCACACAACAGAACAATCTGAGTATGATCTGTCCTCAGGGTATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR-3UTR CAA 90 bp GATACCCTGAGGACAGATCATACTCAGATTGTTCTGTTGTGTGGCAAATTTGTCTCATATAAAAACTTCTaGGCATCTCTTCTGGTGCTT +
Preference number: 3 (lower is better)
Translates to: DTLRTDHTQIVLLCGKFVSYKNF*ASLLVL
Trigger: AAGCACCAGAAGAGATGCCAAGAAGTTTTTATATGA...GACAAATTTGCCACACAACAGAACAATCTGAGTATGATCTGTCCTCAGGGTATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR-3UTR CAA 90 bp AAACAACATGAATTCATCTCAAGTTGTACAATCTGTTACCTTGGCAAGCTTCTAGTTTTTAGGGGCAGCTaGAGTTCCTCCACATTCCAT +
Preference number: 3 (lower is better)
Translates to: KQHEFISSCTICYLGKLLVFRGS*SSSTFH
Trigger: ATGGAATGTGGAGGAACTCAAGCTGCCCCTAAAAAC...TAGAAGCTTGCCAAGGTAACAGATTGTACAACTTGAGATGAATTCATGTTGTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR-3UTR CAA 90 bp AAGACTATGAAACCGAATAAAGGAACTTACACGACAGCTAAGAGTTATTACTGTGATTCATCAAGCCATTaGTGTGAAATTCTGCACCTT +
Preference number: 3 (lower is better)
Translates to: KTMKPNKGTYTTAKSYYCDSSSH*CEILHL
Trigger: AAGGTGCAGAATTTCACACAAATGGCTTGATGAATC...ACAGTAATAACTCTTAGCTGTCGTGTAAGTTCCTTTATTCGGTTTCATAGTCTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR-3UTR CAA 90 bp AAACAACATGAATTCATCTCAAGTTGTACAATCTGTTACCTTGGCAAGCTTCTACTGGTCTTATGGTGTTaGGGGACGTTTTTGATATAT +
Preference number: 3 (lower is better)
Translates to: KQHEFISSCTICYLGKLLLVLWC*GTFLIY
Trigger: ATATATCAAAAACGTCCCCAAACACCATAAGACCAG...TAGAAGCTTGCCAAGGTAACAGATTGTACAACTTGAGATGAATTCATGTTGTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR GCA 90 bp GCCGAGTTCAGACATACTCTGCTGCCTGCAGCACGGCAGCTCCTAGGATCCCTACCCCGGCAGGTCTCCTaGGCTAGCGGTGGGGCGGTG +
Preference number: 4 (lower is better)
Translates to: AEFRHTLLPAARQLLGSLPRQVS*ASGGAV
Trigger: CACCGCCCCACCGCTAGCGCAGGAGACCTGCCGGGG...TAGGGATCCTAGGAGCTGCCGTGCTGCAGGCAGCAGAGTATGTCTGAACTCGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR TCA 90 bp GCCGAGTTCAGACATACTCTGCTGCCTGCAGCACGGCAGCTCCTAGGATCCCTAAGAGGCCACCTCAGATaGGCCTACGGCGTCCAACAA +
Preference number: 4 (lower is better)
Translates to: AEFRHTLLPAARQLLGSLRGHLR*AYGVQQ
Trigger: TTGTTGGACGCCGTAGGCTCATCTGAGGTGGCCTCT...TAGGGATCCTAGGAGCTGCCGTGCTGCAGGCAGCAGAGTATGTCTGAACTCGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR GCA 90 bp GCCGAGTTCAGACATACTCTGCTGCCTGCAGCACGGCAGCTCCTAGGATCCCTAACATACTCTGCTGCCTaGAGCACGGCAGCTCCTAGG +
Preference number: 4 (lower is better)
Translates to: AEFRHTLLPAARQLLGSLTYSAA*STAAPR
Trigger: CCTAGGAGCTGCCGTGCTGCAGGCAGCAGAGTATGT...TAGGGATCCTAGGAGCTGCCGTGCTGCAGGCAGCAGAGTATGTCTGAACTCGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CCA 90 bp TTTCACAGACAGCCCCTGCCACCCGCCCGCCGAGTTCAGACATACTCTGCTGCCATGATTCAGTTGCCATaGGAAGACCGTGGCGTGTTG +
Preference number: 4 (lower is better)
Translates to: FHRQPLPPARRVQTYSAAMIQLP*EDRGVL
Trigger: CAACACGCCACGGTCTTCCCATGGCAACTGAATCAT...GGCAGCAGAGTATGTCTGAACTCGGCGGGCGGGTGGCAGGGGCTGTCTGTGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR TCA 90 bp CCACCCGCCCGCCGAGTTCAGACATACTCTGCTGCCTGCAGCACGGCAGCTCCTTACATAGGTCAGACTTaGTTTTGCCAGTTTCTGCAG +
Preference number: 4 (lower is better)
Translates to: PPARRVQTYSAACSTAAPYIGQT*FCQFLQ
Trigger: CTGCAGAAACTGGCAAAATCAAGTCTGACCTATGTA...AGGAGCTGCCGTGCTGCAGGCAGCAGAGTATGTCTGAACTCGGCGGGCGGGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR GCA 90 bp TTTCACAGACAGCCCCTGCCACCCGCCCGCCGAGTTCAGACATACTCTGCTGCCAGCAGGTATCAGATGTaGATTGAGACTGCAGGTCAG +
Preference number: 4 (lower is better)
Translates to: FHRQPLPPARRVQTYSAASRYQM*IETAGQ
Trigger: CTGACCTGCAGTCTCAATGCACATCTGATACCTGCT...GGCAGCAGAGTATGTCTGAACTCGGCGGGCGGGTGGCAGGGGCTGTCTGTGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CCA 90 bp GCCTGCAGCACGGCAGCTCCTAGGATCCCTAAAGCTCCCAGCAGCTACACAACTGCAGCAACTCTGTGCTaGTCTTATGGTGTTTGGGGA +
Preference number: 4 (lower is better)
Translates to: ACSTAAPRIPKAPSSYTTAATLC*SYGVWG
Trigger: TCCCCAAACACCATAAGACCAGCACAGAGTTGCTGC...AGTTGTGTAGCTGCTGGGAGCTTTAGGGATCCTAGGAGCTGCCGTGCTGCAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR TCA 90 bp TTTCACAGACAGCCCCTGCCACCCGCCCGCCGAGTTCAGACATACTCTGCTGCCGTTTTGAACAAGGAATaGTTCAGTTGCCATGGGAAG +
Preference number: 4 (lower is better)
Translates to: FHRQPLPPARRVQTYSAAVLNKE*FSCHGK
Trigger: CTTCCCATGGCAACTGAATCATTCCTTGTTCAAAAC...GGCAGCAGAGTATGTCTGAACTCGGCGGGCGGGTGGCAGGGGCTGTCTGTGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR GCA 90 bp GCCGAGTTCAGACATACTCTGCTGCCTGCAGCACGGCAGCTCCTAGGATCCCTACTGCACCTTGGGGTTTaGACACATTTCCACCAACAT +
Preference number: 4 (lower is better)
Translates to: AEFRHTLLPAARQLLGSLLHLGV*THFHQH
Trigger: ATGTTGGTGGAAATGTGTGCAAACCCCAAGGTGCAG...TAGGGATCCTAGGAGCTGCCGTGCTGCAGGCAGCAGAGTATGTCTGAACTCGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CCA 90 bp CTCCCAGCAGCTACACAACTTGAGTGCCTACAATTTTTAATACAAACTCACATCCGTCCTCGGGAATGTTaGGCGCAGCGGCGCGGCGCG +
Preference number: 4 (lower is better)
Translates to: LPAATQLECLQFLIQTHIRPREC*AQRRGA
Trigger: CGCGCCGCGCCGCTGCGCCCAACATTCCCGAGGACG...GATGTGAGTTTGTATTAAAAATTGTAGGCACTCAAGTTGTGTAGCTGCTGGGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR TCA 90 bp CTAATTTCACAGACAGCCCCTGCCACCCGCCCGCCGAGTTCAGACATACTCTGCTGGAGGGTGAAGGAGTaGTCTGGTAGATTAAAGTCA +
Preference number: 4 (lower is better)
Translates to: LISQTAPATRPPSSDILCWRVKE*SGRLKS
Trigger: TGACTTTAATCTACCAGATCACTCCTTCACCCTCCA...GCAGAGTATGTCTGAACTCGGCGGGCGGGTGGCAGGGGCTGTCTGTGAAATTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR TCA 90 bp GCCGAGTTCAGACATACTCTGCTGCCTGCAGCACGGCAGCTCCTAGGATCCCTACATCTTTATGGAGGGTaGAGGAGTGATCTGGTAGAT +
Preference number: 4 (lower is better)
Translates to: AEFRHTLLPAARQLLGSLHLYGG*RSDLVD
Trigger: ATCTACCAGATCACTCCTTCACCCTCCATAAAGATG...TAGGGATCCTAGGAGCTGCCGTGCTGCAGGCAGCAGAGTATGTCTGAACTCGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR TCA 90 bp CTAATTTCACAGACAGCCCCTGCCACCCGCCCGCCGAGTTCAGACATACTCTGCTGGCCTCCTGTAGGTTaGATAAGTTCAGTGTTTACC +
Preference number: 4 (lower is better)
Translates to: LISQTAPATRPPSSDILCWPPVG*ISSVFT
Trigger: GGTAAACACTGAACTTATTCAACCTACAGGAGGCCA...GCAGAGTATGTCTGAACTCGGCGGGCGGGTGGCAGGGGCTGTCTGTGAAATTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR GCA 90 bp GATACCCTGAGGACAGATCATACTCAGATTGTTCTGTTGTGTGGCAAATTTGTCCTAGCGGTGGGGCGGTaGTCCGGTCTGGACGATACG +
Preference number: 4 (lower is better)
Translates to: DTLRTDHTQIVLLCGKFVLAVGR*SGLDDT
Trigger: CGTATCGTCCAGACCGGAGCACCGCCCCACCGCTAG...GACAAATTTGCCACACAACAGAACAATCTGAGTATGATCTGTCCTCAGGGTATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR GCA 90 bp CTAATTTCACAGACAGCCCCTGCCACCCGCCCGCCGAGTTCAGACATACTCTGCATTTGTGTGAAATTCTaGACCTTGGGGTTTGCACAC +
Preference number: 4 (lower is better)
Translates to: LISQTAPATRPPSSDILCICVKF*TLGFAH
Trigger: GTGTGCAAACCCCAAGGTGCAGAATTTCACACAAAT...GCAGAGTATGTCTGAACTCGGCGGGCGGGTGGCAGGGGCTGTCTGTGAAATTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CCA 90 bp CTCCCAGCAGCTACACAACTTGAGTGCCTACAATTTTTAATACAAACTCACATCGGCGGTGCTCCGGTCTaGACGATACGCGCCCGCGAA +
Preference number: 4 (lower is better)
Translates to: LPAATQLECLQFLIQTHIGGAPV*TIRARE
Trigger: TTCGCGGGCGCGTATCGTCCAGACCGGAGCACCGCC...GATGTGAGTTTGTATTAAAAATTGTAGGCACTCAAGTTGTGTAGCTGCTGGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR GCA 90 bp CTCCCAGCAGCTACACAACTTGAGTGCCTACAATTTTTAATACAAACTCACATCTTCACAGACAGCCCCTaGCACCCGCCCGCCGAGTTC +
Preference number: 4 (lower is better)
Translates to: LPAATQLECLQFLIQTHIFTDSP*HPPAEF
Trigger: GAACTCGGCGGGCGGGTGGCAGGGGCTGTCTGTGAA...GATGTGAGTTTGTATTAAAAATTGTAGGCACTCAAGTTGTGTAGCTGCTGGGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CCA 90 bp AGGCAATGCCTCACGGGACACTTCCGTAAGGGGATGTCAAAACTGCTGCCACACTCTGTGCTGGTCTTATaGTGTTTGGGGACGTTTTTG +
Preference number: 4 (lower is better)
Translates to: RQCLTGHFRKGMSKLLPHSVLVL*CLGTFL
Trigger: CAAAAACGTCCCCAAACACCATAAGACCAGCACAGA...GTGTGGCAGCAGTTTTGACATCCCCTTACGGAAGTGTCCCGTGAGGCATTGCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR TCA 90 bp TCTGCACCTTGGGGTTTGCACACATTTCCACCAACATCGGTGTCTCCATCCCCAATCAAGCCATTTGTGTaGAATTCTGCACCTTGGGGT +
Preference number: 4 (lower is better)
Translates to: SAPWGLHTFPPTSVSPSPIKPFV*NSAPWG
Trigger: ACCCCAAGGTGCAGAATTTCACACAAATGGCTTGAT...TGGGGATGGAGACACCGATGTTGGTGGAAATGTGTGCAAACCCCAAGGTGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR TCA 90 bp GCCGAGTTCAGACATACTCTGCTGCCTGCAGCACGGCAGCTCCTAGGATCCCTATCCAACAAAGTAGAATaGACTGACTTACCTGAAGAA +
Preference number: 4 (lower is better)
Translates to: AEFRHTLLPAARQLLGSLSNKVE*TDLPEE
Trigger: TTCTTCAGGTAAGTCAGTTCATTCTACTTTGTTGGA...TAGGGATCCTAGGAGCTGCCGTGCTGCAGGCAGCAGAGTATGTCTGAACTCGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR TCA 90 bp TCTGCACCTTGGGGTTTGCACACATTTCCACCAACATCGGTGTCTCCATCCCCAATCACTGGAGAGTGCTaGCTGCACAATCTAACCAAA +
Preference number: 4 (lower is better)
Translates to: SAPWGLHTFPPTSVSPSPITGEC*LHNLTK
Trigger: TTTGGTTAGATTGTGCAGTCAGCACTCTCCAGTGAT...TGGGGATGGAGACACCGATGTTGGTGGAAATGTGTGCAAACCCCAAGGTGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CCA 90 bp GCCTGCAGCACGGCAGCTCCTAGGATCCCTAAAGCTCCCAGCAGCTACACAACTATATTTTTGAGCCTCTaGAGGGCAATGATTAAAAGC +
Preference number: 4 (lower is better)
Translates to: ACSTAAPRIPKAPSSYTTIFLSL*RAMIKS
Trigger: GCTTTTAATCATTGCCCTCCAGAGGCTCAAAAATAT...AGTTGTGTAGCTGCTGGGAGCTTTAGGGATCCTAGGAGCTGCCGTGCTGCAGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR TCA 90 bp TCTGCACCTTGGGGTTTGCACACATTTCCACCAACATCGGTGTCTCCATCCCCAGAAACGCTAAAAGGCTaGGGAATATGGACACATAGA +
Preference number: 4 (lower is better)
Translates to: SAPWGLHTFPPTSVSPSPETLKG*GIWTHR
Trigger: TCTATGTGTCCATATTCCTCAGCCTTTTAGCGTTTC...TGGGGATGGAGACACCGATGTTGGTGGAAATGTGTGCAAACCCCAAGGTGCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CCA 90 bp GCCTGCAGCACGGCAGCTCCTAGGATCCCTAAAGCTCCCAGCAGCTACACAACTTACAATCTGTTACCTTaGCAAGCTTCTAATGACAAA +
Preference number: 4 (lower is better)
Translates to: ACSTAAPRIPKAPSSYTTYNLLP*QASNDK
Trigger: TTTGTCATTAGAAGCTTGCCAAGGTAACAGATTGTA...AGTTGTGTAGCTGCTGGGAGCTTTAGGGATCCTAGGAGCTGCCGTGCTGCAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CCA 90 bp CTGCAGGCTCAGTTGATTTCACGGCTTTGTAAAAGAAATGAAGTGCGAGTCCATATGGGTCCACTGACGTaGACAGGGATGTGGGAAACA +
Preference number: 4 (lower is better)
Translates to: LQAQLISRLCKRNEVRVHMGPLT*TGMWET
Trigger: TGTTTCCCACATCCCTGTCCACGTCAGTGGACCCAT...ATGGACTCGCACTTCATTTCTTTTACAAAGCCGTGAAATCAACTGAGCCTGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR GCA 90 bp CTCCCAGCAGCTACACAACTTGAGTGCCTACAATTTTTAATACAAACTCACATCAGTTCAGACATACTCTaGTGCCTGCAGCACGGCAGC +
Preference number: 4 (lower is better)
Translates to: LPAATQLECLQFLIQTHISSDIL*CLQHGS
Trigger: GCTGCCGTGCTGCAGGCAGCAGAGTATGTCTGAACT...GATGTGAGTTTGTATTAAAAATTGTAGGCACTCAAGTTGTGTAGCTGCTGGGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR GCA 90 bp CTGCAGGCTCAGTTGATTTCACGGCTTTGTAAAAGAAATGAAGTGCGAGTCCATGGATGTCAAAACTGCTaGCACACTCAAGGACTCTTC +
Preference number: 4 (lower is better)
Translates to: LQAQLISRLCKRNEVRVHGCQNC*HTQGLF
Trigger: GAAGAGTCCTTGAGTGTGGCAGCAGTTTTGACATCC...ATGGACTCGCACTTCATTTCTTTTACAAAGCCGTGAAATCAACTGAGCCTGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CCA 90 bp AAGACTATGAAACCGAATAAAGGAACTTACACGACAGCTAAGAGTTATTACTGTGCCATGGGAAGACCGTaGCGTGTTGATGCAGTGGCC +
Preference number: 4 (lower is better)
Translates to: KTMKPNKGTYTTAKSYYCAMGRP*RVDAVA
Trigger: GGCCACTGCATCAACACGCCACGGTCTTCCCATGGC...ACAGTAATAACTCTTAGCTGTCGTGTAAGTTCCTTTATTCGGTTTCATAGTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR GCA 90 bp CTCCCAGCAGCTACACAACTTGAGTGCCTACAATTTTTAATACAAACTCACATCAGGGGATGTCAAAACTaGTGCCACACTCAAGGACTC +
Preference number: 4 (lower is better)
Translates to: LPAATQLECLQFLIQTHIRGCQN*CHTQGL
Trigger: GAGTCCTTGAGTGTGGCAGCAGTTTTGACATCCCCT...GATGTGAGTTTGTATTAAAAATTGTAGGCACTCAAGTTGTGTAGCTGCTGGGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR GCA 90 bp CTCCCAGCAGCTACACAACTTGAGTGCCTACAATTTTTAATACAAACTCACATCTCTTTCATGAGGCAATaGCTCACGGGACACTTCCGT +
Preference number: 4 (lower is better)
Translates to: LPAATQLECLQFLIQTHISFMRQ*LTGHFR
Trigger: ACGGAAGTGTCCCGTGAGGCATTGCCTCATGAAAGA...GATGTGAGTTTGTATTAAAAATTGTAGGCACTCAAGTTGTGTAGCTGCTGGGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR GCA 90 bp GATACCCTGAGGACAGATCATACTCAGATTGTTCTGTTGTGTGGCAAATTTGTCCTGAGCTCACATGTGTaGCTAATTTCACAGACAGCC +
Preference number: 4 (lower is better)
Translates to: DTLRTDHTQIVLLCGKFVLSSHV*LISQTA
Trigger: GGCTGTCTGTGAAATTAGGCACACATGTGAGCTCAG...GACAAATTTGCCACACAACAGAACAATCTGAGTATGATCTGTCCTCAGGGTATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR GCA 90 bp CTCCCAGCAGCTACACAACTTGAGTGCCTACAATTTTTAATACAAACTCACATCAGGGCAGCAACTCTGTaGTGGTCTTATGGTGTTTGG +
Preference number: 4 (lower is better)
Translates to: LPAATQLECLQFLIQTHIRAATL*WSYGVW
Trigger: CCAAACACCATAAGACCAGCACAGAGTTGCTGCCCT...GATGTGAGTTTGTATTAAAAATTGTAGGCACTCAAGTTGTGTAGCTGCTGGGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CCA 90 bp GATACCCTGAGGACAGATCATACTCAGATTGTTCTGTTGTGTGGCAAATTTGTCACGTGGACAGGGATGTaGGAAACAGCTCAAGAAAAG +
Preference number: 4 (lower is better)
Translates to: DTLRTDHTQIVLLCGKFVTWTGM*ETAQEK
Trigger: CTTTTCTTGAGCTGTTTCCCACATCCCTGTCCACGT...GACAAATTTGCCACACAACAGAACAATCTGAGTATGATCTGTCCTCAGGGTATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
3UTR CAA 72 bp TACCTGAAGAAGCCCAGTCTAGATTCATCAAGCCATTaGTGTGAAATTCTGCACCTTGGGGTTTGCACACAT +
Preference number: 4 (lower is better)
Translates to: YLKKPSLDSSSH*CEILHLGVCTH
Trigger: ATGTGTGCAAACCCCAAGGTGCAGAATTTCACACAAATGGCTTGATGAATCTAGACTGGGCTTCTTCAGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR TCA 90 bp CTCCCAGCAGCTACACAACTTGAGTGCCTACAATTTTTAATACAAACTCACATCTTTTTAGGGGCAGCTTaGGTTCCTCCACATTCCATG +
Preference number: 4 (lower is better)
Translates to: LPAATQLECLQFLIQTHIFLGAA*VPPHSM
Trigger: CATGGAATGTGGAGGAACTCAAGCTGCCCCTAAAAA...GATGTGAGTTTGTATTAAAAATTGTAGGCACTCAAGTTGTGTAGCTGCTGGGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CCA 90 bp AAGACTATGAAACCGAATAAAGGAACTTACACGACAGCTAAGAGTTATTACTGTGTCGCTTGGATACTCTaGGTAGGAGGAACTGGAGGA +
Preference number: 4 (lower is better)
Translates to: KTMKPNKGTYTTAKSYYCVAWIL*VGGTGG
Trigger: TCCTCCAGTTCCTCCTACCCAGAGTATCCAAGCGAC...ACAGTAATAACTCTTAGCTGTCGTGTAAGTTCCTTTATTCGGTTTCATAGTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CCA 90 bp AAGACTATGAAACCGAATAAAGGAACTTACACGACAGCTAAGAGTTATTACTGTACTTCCAGCGTCGCTTaGATACTCTGGGTAGGAGGA +
Preference number: 4 (lower is better)
Translates to: KTMKPNKGTYTTAKSYYCTSSVA*ILWVGG
Trigger: TCCTCCTACCCAGAGTATCCAAGCGACGCTGGAAGT...ACAGTAATAACTCTTAGCTGTCGTGTAAGTTCCTTTATTCGGTTTCATAGTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR TCA 90 bp CTCCCAGCAGCTACACAACTTGAGTGCCTACAATTTTTAATACAAACTCACATCGATATAAAGATACCCTaGGGACAGATCATACTCAGA +
Preference number: 4 (lower is better)
Translates to: LPAATQLECLQFLIQTHIDIKIP*GQIILR
Trigger: TCTGAGTATGATCTGTCCTCAGGGTATCTTTATATC...GATGTGAGTTTGTATTAAAAATTGTAGGCACTCAAGTTGTGTAGCTGCTGGGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CCA 90 bp AAACAACATGAATTCATCTCAAGTTGTACAATCTGTTACCTTGGCAAGCTTCTACCCCATTCTAATCACTaGAGAGTGCTGACTGCACAA +
Preference number: 4 (lower is better)
Translates to: KQHEFISSCTICYLGKLLPHSNH*RVLTAQ
Trigger: TTGTGCAGTCAGCACTCTCCAGTGATTAGAATGGGG...TAGAAGCTTGCCAAGGTAACAGATTGTACAACTTGAGATGAATTCATGTTGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR GCA 90 bp AAGACTATGAAACCGAATAAAGGAACTTACACGACAGCTAAGAGTTATTACTGTACCTCTGAGAGGAAATaGTGCAGACTTCCAAATTGG +
Preference number: 4 (lower is better)
Translates to: KTMKPNKGTYTTAKSYYCTSERK*CRLPNW
Trigger: CCAATTTGGAAGTCTGCAGCATTTCCTCTCAGAGGT...ACAGTAATAACTCTTAGCTGTCGTGTAAGTTCCTTTATTCGGTTTCATAGTCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR TCA 90 bp AAGACTATGAAACCGAATAAAGGAACTTACACGACAGCTAAGAGTTATTACTGTTTCTCTACTAAACATTaGGAGCAAGAACCATTGCGG +
Preference number: 4 (lower is better)
Translates to: KTMKPNKGTYTTAKSYYCFSTKH*EQEPLR
Trigger: CCGCAATGGTTCTTGCTCTCAATGTTTAGTAGAGAA...ACAGTAATAACTCTTAGCTGTCGTGTAAGTTCCTTTATTCGGTTTCATAGTCTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR GCA 90 bp AAGACTATGAAACCGAATAAAGGAACTTACACGACAGCTAAGAGTTATTACTGTTTTCACGATCGTGTTTaGAGAATTCACAGGCTGTTA +
Preference number: 4 (lower is better)
Translates to: KTMKPNKGTYTTAKSYYCFHDRV*RIHRLL
Trigger: TAACAGCCTGTGAATTCTGCAAACACGATCGTGAAA...ACAGTAATAACTCTTAGCTGTCGTGTAAGTTCCTTTATTCGGTTTCATAGTCTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CCA 90 bp AAACAACATGAATTCATCTCAAGTTGTACAATCTGTTACCTTGGCAAGCTTCTAAAAGGTTTGAAAAAGTaGACCTCTGAGAGGAAATGC +
Preference number: 4 (lower is better)
Translates to: KQHEFISSCTICYLGKLLKGLKK*TSERKC
Trigger: GCATTTCCTCTCAGAGGTCCACTTTTTCAAACCTTT...TAGAAGCTTGCCAAGGTAACAGATTGTACAACTTGAGATGAATTCATGTTGTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR TCA 90 bp AAGACTATGAAACCGAATAAAGGAACTTACACGACAGCTAAGAGTTATTACTGTAGCAGCTACACAACTTaGGTGCCTACAATTTTTAAT +
Preference number: 4 (lower is better)
Translates to: KTMKPNKGTYTTAKSYYCSSYTT*VPTIFN
Trigger: ATTAAAAATTGTAGGCACTCAAGTTGTGTAGCTGCT...ACAGTAATAACTCTTAGCTGTCGTGTAAGTTCCTTTATTCGGTTTCATAGTCTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS GCA 90 bp ACACGCGACTTCCCCGGCAGGTCTCCTGCGCTAGCGGTGGGGCGGTaGTCCGGTCTGGACGATACGCGCCCGCGAAGCCGTCCTCGGGAA +
Preference number: 5 (lower is better)
Translates to: TRDFPGRSPALAVGR*SGLDDTRPRSRPRE
Trigger: TTCCCGAGGACGGCTTCGCGGGCGCGTATCGTCCAGACCGGAGCACCGCCCCACCGCTAGCGCAGGAGACCTGCCGGGGAAGTCGCGTGT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS GCA 90 bp ATTGAGACTGCAGGTCAGGACACGCGACTTCCCCGGCAGGTCTCCTaGGCTAGCGGTGGGGCGGTGCTCCGGTCTGGACGATACGCGCCC +
Preference number: 5 (lower is better)
Translates to: IETAGQDTRLPRQVS*ASGGAVLRSGRYAP
Trigger: GGGCGCGTATCGTCCAGACCGGAGCACCGCCCCACCGCTAGCGCAGGAGACCTGCCGGGGAAGTCGCGTGTCCTGACCTGCAGTCTCAAT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CAA 90 bp GCCTGCAGCACGGCAGCTCCTAGGATCCCTAAAGCTCCCAGCAGCTACACAACTCCGTCCTCGGGAATGTaGGGCGCAGCGGCGCGGCGC +
Preference number: 5 (lower is better)
Translates to: ACSTAAPRIPKAPSSYTTPSSGM*GAAARR
Trigger: GCGCCGCGCCGCTGCGCCCAACATTCCCGAGGACGG...AGTTGTGTAGCTGCTGGGAGCTTTAGGGATCCTAGGAGCTGCCGTGCTGCAGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CAA 90 bp CCACCCGCCCGCCGAGTTCAGACATACTCTGCTGCCTGCAGCACGGCAGCTCCTGTGAAATTCTGCACCTaGGGGTTTGCACACATTTCC +
Preference number: 5 (lower is better)
Translates to: PPARRVQTYSAACSTAAPVKFCT*GFAHIS
Trigger: GGAAATGTGTGCAAACCCCAAGGTGCAGAATTTCAC...AGGAGCTGCCGTGCTGCAGGCAGCAGAGTATGTCTGAACTCGGCGGGCGGGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CAA 90 bp CCACCCGCCCGCCGAGTTCAGACATACTCTGCTGCCTGCAGCACGGCAGCTCCTTTTTCACGATCGTGTTaGCAGAATTCACAGGCTGTT +
Preference number: 5 (lower is better)
Translates to: PPARRVQTYSAACSTAAPFSRSC*QNSQAV
Trigger: AACAGCCTGTGAATTCTGCAAACACGATCGTGAAAA...AGGAGCTGCCGTGCTGCAGGCAGCAGAGTATGTCTGAACTCGGCGGGCGGGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CAA 90 bp AGGCAATGCCTCACGGGACACTTCCGTAAGGGGATGTCAAAACTGCTGCCACACGAAGACCGTGGCGTGTaGATGCAGTGGCCTCCTGTA +
Preference number: 5 (lower is better)
Translates to: RQCLTGHFRKGMSKLLPHEDRGV*MQWPPV
Trigger: TACAGGAGGCCACTGCATCAACACGCCACGGTCTTC...GTGTGGCAGCAGTTTTGACATCCCCTTACGGAAGTGTCCCGTGAGGCATTGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CAA 90 bp GCCGAGTTCAGACATACTCTGCTGCCTGCAGCACGGCAGCTCCTAGGATCCCTATCTGCACCTTGGGGTTaGCACACATTTCCACCAACA +
Preference number: 5 (lower is better)
Translates to: AEFRHTLLPAARQLLGSLSAPWG*HTFPPT
Trigger: TGTTGGTGGAAATGTGTGCAAACCCCAAGGTGCAGA...TAGGGATCCTAGGAGCTGCCGTGCTGCAGGCAGCAGAGTATGTCTGAACTCGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CAA 90 bp GCCTGCAGCACGGCAGCTCCTAGGATCCCTAAAGCTCCCAGCAGCTACACAACTGAGGAGATGATATTTTaGAGCCTCTGGAGGGCAATG +
Preference number: 5 (lower is better)
Translates to: ACSTAAPRIPKAPSSYTTEEMIF*SLWRAM
Trigger: CATTGCCCTCCAGAGGCTCAAAAATATCATCTCCTC...AGTTGTGTAGCTGCTGGGAGCTTTAGGGATCCTAGGAGCTGCCGTGCTGCAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CAA 90 bp TTTCACAGACAGCCCCTGCCACCCGCCCGCCGAGTTCAGACATACTCTGCTGCCTTTCTGCAGGCTCAGTaGATTTCACGGCTTTGTAAA +
Preference number: 5 (lower is better)
Translates to: FHRQPLPPARRVQTYSAAFLQAQ*ISRLCK
Trigger: TTTACAAAGCCGTGAAATCAACTGAGCCTGCAGAAA...GGCAGCAGAGTATGTCTGAACTCGGCGGGCGGGTGGCAGGGGCTGTCTGTGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CAA 90 bp CTAATTTCACAGACAGCCCCTGCCACCCGCCCGCCGAGTTCAGACATACTCTGCGTTTTTAGGGGCAGCTaGAGTTCCTCCACATTCCAT +
Preference number: 5 (lower is better)
Translates to: LISQTAPATRPPSSDILCVFRGS*SSSTFH
Trigger: ATGGAATGTGGAGGAACTCAAGCTGCCCCTAAAAAC...GCAGAGTATGTCTGAACTCGGCGGGCGGGTGGCAGGGGCTGTCTGTGAAATTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CAA 90 bp GCCGAGTTCAGACATACTCTGCTGCCTGCAGCACGGCAGCTCCTAGGATCCCTAGTGGCCTCCTGTAGGTaGAATAAGTTCAGTGTTTAC +
Preference number: 5 (lower is better)
Translates to: AEFRHTLLPAARQLLGSLVASCR*NKFSVY
Trigger: GTAAACACTGAACTTATTCAACCTACAGGAGGCCAC...TAGGGATCCTAGGAGCTGCCGTGCTGCAGGCAGCAGAGTATGTCTGAACTCGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CAA 90 bp TTTCACAGACAGCCCCTGCCACCCGCCCGCCGAGTTCAGACATACTCTGCTGCCACTCAGATTGTTCTGTaGTGTGGCAAATTTGTCCTT +
Preference number: 5 (lower is better)
Translates to: FHRQPLPPARRVQTYSAATQIVL*CGKFVL
Trigger: AAGGACAAATTTGCCACACAACAGAACAATCTGAGT...GGCAGCAGAGTATGTCTGAACTCGGCGGGCGGGTGGCAGGGGCTGTCTGTGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CAA 90 bp TCTGCACCTTGGGGTTTGCACACATTTCCACCAACATCGGTGTCTCCATCCCCAGGTATCAGATGTGCATaGAGACTGCAGGTCAGGACA +
Preference number: 5 (lower is better)
Translates to: SAPWGLHTFPPTSVSPSPGIRCA*RLQVRT
Trigger: TGTCCTGACCTGCAGTCTCAATGCACATCTGATACC...TGGGGATGGAGACACCGATGTTGGTGGAAATGTGTGCAAACCCCAAGGTGCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CAA 90 bp TTTCACAGACAGCCCCTGCCACCCGCCCGCCGAGTTCAGACATACTCTGCTGCCTCATATAAAAACTTCTaGGCATCTCTTCTGGTGCTT +
Preference number: 5 (lower is better)
Translates to: FHRQPLPPARRVQTYSAASYKNF*ASLLVL
Trigger: AAGCACCAGAAGAGATGCCAAGAAGTTTTTATATGA...GGCAGCAGAGTATGTCTGAACTCGGCGGGCGGGTGGCAGGGGCTGTCTGTGAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS CCA 90 bp AGATGTAGACGTTTGACAGGTGGCCTGAGGATGGGTCCACTGACGTaGACAGGGATGTGGGAAACAGCTCAAGAAAAGTTCCATTCTCCA +
Preference number: 5 (lower is better)
Translates to: RCRRLTGGLRMGPLT*TGMWETAQEKFHSP
Trigger: TGGAGAATGGAACTTTTCTTGAGCTGTTTCCCACATCCCTGTCCACGTCAGTGGACCCATCCTCAGGCCACCTGTCAAACGTCTACATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CAA 90 bp TCTGCACCTTGGGGTTTGCACACATTTCCACCAACATCGGTGTCTCCATCCCCAAGGTCAGACTTGATTTaGCCAGTTTCTGCAGGCTCA +
Preference number: 5 (lower is better)
Translates to: SAPWGLHTFPPTSVSPSPRSDLI*PVSAGS
Trigger: TGAGCCTGCAGAAACTGGCAAAATCAAGTCTGACCT...TGGGGATGGAGACACCGATGTTGGTGGAAATGTGTGCAAACCCCAAGGTGCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CAA 90 bp CTAATTTCACAGACAGCCCCTGCCACCCGCCCGCCGAGTTCAGACATACTCTGCCTGGTCTTATGGTGTTaGGGGACGTTTTTGATATAT +
Preference number: 5 (lower is better)
Translates to: LISQTAPATRPPSSDILCLVLWC*GTFLIY
Trigger: ATATATCAAAAACGTCCCCAAACACCATAAGACCAG...GCAGAGTATGTCTGAACTCGGCGGGCGGGTGGCAGGGGCTGTCTGTGAAATTAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CAA 90 bp TCTGCACCTTGGGGTTTGCACACATTTCCACCAACATCGGTGTCTCCATCCCCACTCAGGATGAAAGGTTaGAAAAAGTGGACCTCTGAG +
Preference number: 5 (lower is better)
Translates to: SAPWGLHTFPPTSVSPSPLRMKG*KKWTSE
Trigger: CTCAGAGGTCCACTTTTTCAAACCTTTCATCCTGAG...TGGGGATGGAGACACCGATGTTGGTGGAAATGTGTGCAAACCCCAAGGTGCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CAA 90 bp TCTGCACCTTGGGGTTTGCACACATTTCCACCAACATCGGTGTCTCCATCCCCACTACATAGGTCAGACTaGATTTTGCCAGTTTCTGCA +
Preference number: 5 (lower is better)
Translates to: SAPWGLHTFPPTSVSPSPLHRSD*ILPVSA
Trigger: TGCAGAAACTGGCAAAATCAAGTCTGACCTATGTAG...TGGGGATGGAGACACCGATGTTGGTGGAAATGTGTGCAAACCCCAAGGTGCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CAA 90 bp GATACCCTGAGGACAGATCATACTCAGATTGTTCTGTTGTGTGGCAAATTTGTCCATAGATGTAGACGTTaGACAGGTGGCCTGAGGATG +
Preference number: 5 (lower is better)
Translates to: DTLRTDHTQIVLLCGKFVHRCRR*TGGLRM
Trigger: CATCCTCAGGCCACCTGTCAAACGTCTACATCTATG...GACAAATTTGCCACACAACAGAACAATCTGAGTATGATCTGTCCTCAGGGTATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS TCA 90 bp CTGAGGAAGTGTCAGGTTCAGACATCTTTATGGAGGGTGAAGGAGTaGTCTGGTAGATTAAAGTCAAAACTTCACACAGGGCTTACACAG +
Preference number: 5 (lower is better)
Translates to: LRKCQVQTSLWRVKE*SGRLKSKLHTGLTQ
Trigger: CTGTGTAAGCCCTGTGTGAAGTTTTGACTTTAATCTACCAGATCACTCCTTCACCCTCCATAAAGATGTCTGAACCTGACACTTCCTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CAA 90 bp AAACAACATGAATTCATCTCAAGTTGTACAATCTGTTACCTTGGCAAGCTTCTAAACTTCCAGCGTCGCTaGGATACTCTGGGTAGGAGG +
Preference number: 5 (lower is better)
Translates to: KQHEFISSCTICYLGKLLNFQRR*DTLGRR
Trigger: CCTCCTACCCAGAGTATCCAAGCGACGCTGGAAGTT...TAGAAGCTTGCCAAGGTAACAGATTGTACAACTTGAGATGAATTCATGTTGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CAA 90 bp AAACAACATGAATTCATCTCAAGTTGTACAATCTGTTACCTTGGCAAGCTTCTACTGCAGACTTCCAAATaGGTGAAAGAACTTCCAGCG +
Preference number: 5 (lower is better)
Translates to: KQHEFISSCTICYLGKLLLQTSK*VKELPA
Trigger: CGCTGGAAGTTCTTTCACCAATTTGGAAGTCTGCAG...TAGAAGCTTGCCAAGGTAACAGATTGTACAACTTGAGATGAATTCATGTTGTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS-3UTR CAA 90 bp AAACAACATGAATTCATCTCAAGTTGTACAATCTGTTACCTTGGCAAGCTTCTAGATTCATCAAGCCATTaGTGTGAAATTCTGCACCTT +
Preference number: 5 (lower is better)
Translates to: KQHEFISSCTICYLGKLLDSSSH*CEILHL
Trigger: AAGGTGCAGAATTTCACACAAATGGCTTGATGAATC...TAGAAGCTTGCCAAGGTAACAGATTGTACAACTTGAGATGAATTCATGTTGTTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS GCA 72 bp TTCCCCGGCAGGTCTCCTGCGCTAGCGGTGGGGCGGTaGTCCGGTCTGGACGATACGCGCCCGCGAAGCCGT +
Preference number: 6 (lower is better)
Translates to: FPGRSPALAVGR*SGLDDTRPRSR
Trigger: ACGGCTTCGCGGGCGCGTATCGTCCAGACCGGAGCACCGCCCCACCGCTAGCGCAGGAGACCTGCCGGGGAA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS GCA 72 bp GCAGGTCAGGACACGCGACTTCCCCGGCAGGTCTCCTaGGCTAGCGGTGGGGCGGTGCTCCGGTCTGGACGA +
Preference number: 6 (lower is better)
Translates to: AGQDTRLPRQVS*ASGGAVLRSGR
Trigger: TCGTCCAGACCGGAGCACCGCCCCACCGCTAGCGCAGGAGACCTGCCGGGGAAGTCGCGTGTCCTGACCTGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS CCA 72 bp GGCCTGAGGATGGGTCCACTGACGTGGACAGGGATGTaGGAAACAGCTCAAGAAAAGTTCCATTCTCCACAC +
Preference number: 6 (lower is better)
Translates to: GLRMGPLTWTGM*ETAQEKFHSPH
Trigger: GTGTGGAGAATGGAACTTTTCTTGAGCTGTTTCCCACATCCCTGTCCACGTCAGTGGACCCATCCTCAGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315190.4
CDS CCA 72 bp GACTTCCAAATTGGTGAAAGAACTTCCAGCGTCGCTTaGATACTCTGGGTAGGAGGAACTGGAGGAGATGAT +
Preference number: 6 (lower is better)
Translates to: DFQIGERTSSVA*ILWVGGTGGDD
Trigger: ATCATCTCCTCCAGTTCCTCCTACCCAGAGTATCCAAGCGACGCTGGAAGTTCTTTCACCAATTTGGAAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315190.4