RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SERTAD4 (Homo sapiens)

Ensembl gene IDs: ENSG00000082497

Ensembl transcript IDs: ENST00000367012.4, ENST00000482421.1, ENST00000490620.5, ENST00000626471.1, ENST00000629302.2, ENST00000630425.2

Found 247 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTCTACCGAACAGGTGCAGGCGCTCACAGCTCAGGTGAGTGCTGCTaGAAATCACCAACTTTGTCATTTTACAGCTTTGGCCTTCAAGAA +
Preference number: 1 (lower is better)
Translates to: FYRTGAGAHSSGECC*KSPTLSFYSFGLQE
Trigger: TTCTTGAAGGCCAAAGCTGTAAAATGACAAAGTTGGTGATTTTCAGCAGCACTCACCTGAGCTGTGAGCGCCTGCACCTGTTCGGTAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR TCA 90 bp ATGGAATATCTCATGCATAAAAGACAATGCTGGGTGCATGGGAGGTaGACACAGGAAGTCCTAGCACTCTCGCCTACTAACAAGAGAATT +
Preference number: 1 (lower is better)
Translates to: MEYLMHKRQCWVHGR*TQEVLALSPTNKRI
Trigger: AATTCTCTTGTTAGTAGGCGAGAGTGCTAGGACTTCCTGTGTTCACCTCCCATGCACCCAGCATTGTCTTTTATGCATGAGATATTCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR GCA 90 bp ATAAGAAGCTCGCTGATGCCTGCTATACAGATGTTTTACGCAATCTaGTCTCCAGGCATTAAAACGACATGGCATGTTCATGGCATAATT +
Preference number: 1 (lower is better)
Translates to: IRSSLMPAIQMFYAI*SPGIKTTWHVHGII
Trigger: AATTATGCCATGAACATGCCATGTCGTTTTAATGCCTGGAGAGCAGATTGCGTAAAACATCTGTATAGCAGGCATCAGCGAGCTTCTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR TCA 90 bp TCACATAGGAATCCTTGTATCCTTGTCTTATATTTGTTGCGAAGTTaGTGTCTCTTAATGGTCATGTCTTCTACAAGTTGTCCTCTGCTC +
Preference number: 1 (lower is better)
Translates to: SHRNPCILVLYLLRS*CLLMVMSSTSCPLL
Trigger: GAGCAGAGGACAACTTGTAGAAGACATGACCATTAAGAGACATCAACTTCGCAACAAATATAAGACAAGGATACAAGGATTCCTATGTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR GCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACAGCTCGAGCAGCCCGTaGTGCTTTCTAACAGCTCTC +
Preference number: 2 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNSSSSP*CFLTAL
Trigger: GAGAGCTGTTAGAAAGCAGCACGGGCTGCTCGAGCT...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR CAA 90 bp CACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTaGCAGGGAATACCCTCTCTGTGTAAGACTGTTGATTGCCGCCCC +
Preference number: 2 (lower is better)
Translates to: HLSKSLITHHRQARN*QGIPSLCKTVDCRP
Trigger: GGGGCGGCAATCAACAGTCTTACACAGAGAGGGTATTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR GCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTGTTCTACCGAACAGGTaGAGGCGCTCACAGCTCAGG +
Preference number: 2 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSVLPNR*RRSQLR
Trigger: CCTGAGCTGTGAGCGCCTGCACCTGTTCGGTAGAAC...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR GCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTCATGTCCCCTGTCCCTaGAATCCTGTCCCTAGGACC +
Preference number: 2 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSHVPCP*NPVPRT
Trigger: GGTCCTAGGGACAGGATTGCAGGGACAGGGGACATG...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR TCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGCGCTCACAGCTCAGGTaGGTGCTGCTGAAAATCACC +
Preference number: 2 (lower is better)
Translates to: HHLSYREVILVGSTEQVQRSQLR*VLLKIT
Trigger: GGTGATTTTCAGCAGCACTCACCTGAGCTGTGAGCG...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACTTTAGCAGGAAGAGTTaGCTGGAGTGGAAGGAAGGA +
Preference number: 2 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNFSRKS*LEWKEG
Trigger: TCCTTCCTTCCACTCCAGCCAACTCTTCCTGCTAAA...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR TCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACAGATATAACTTACTATaGAGGGTGTCCTGGCCACTC +
Preference number: 2 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNRYNLL*RVSWPL
Trigger: GAGTGGCCAGGACACCCTTCATAGTAAGTTATATCT...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR GCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCGGCAAGCCAGAAACTTaGAGGGAATACCCTCTCTGT +
Preference number: 2 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGGKPET*REYPLC
Trigger: ACAGAGAGGGTATTCCCTGCAAGTTTCTGGCTTGCC...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR GCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGTCGAGCAGCCCGTGCTaGTTTCTAACAGCTCTCTCT +
Preference number: 2 (lower is better)
Translates to: HHLSYREVILVGSTEQVQSSSPC*FLTALS
Trigger: AGAGAGAGCTGTTAGAAAGCAGCACGGGCTGCTCGA...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR CAA 90 bp GGCAAGCCAGAAACTTGCAGGGAATACCCTCTCTGTGTAAGACTGTaGATTGCCGCCCCTAGACAGGTGTGTTTCATTATGTTACATCCT +
Preference number: 2 (lower is better)
Translates to: GKPETCREYPLCVRL*IAAPRQVCFIMLHP
Trigger: AGGATGTAACATAATGAAACACACCTGTCTAGGGGCGGCAATCAACAGTCTTACACAGAGAGGGTATTCCCTGCAAGTTTCTGGCTTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR TCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAATTTACGAGAGCTAACTaGTCATGCTGTGCATGCTTC +
Preference number: 2 (lower is better)
Translates to: TSLKASSPITGKPETCREFTRAN*SCCACF
Trigger: GAAGCATGCACAGCATGATCAGTTAGCTCTCGTAAA...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR TCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACTTCCTCCATCCCTATTaGAAAAACGGCGAATCCAAA +
Preference number: 2 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNFLHPY*KNGESK
Trigger: TTTGGATTCGCCGTTTTTTCAATAGGGATGGAGGAA...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR GCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAAAAGCTCGCTGATGCCTaGTATACAGATGTTTTACGC +
Preference number: 2 (lower is better)
Translates to: TSLKASSPITGKPETCREKLADA*YTDVLR
Trigger: GCGTAAAACATCTGTATAGCAGGCATCAGCGAGCTT...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR GCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTAAAGACAATGCTGGGTaGATGGGAGGTGAACACAGG +
Preference number: 2 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSKDNAG*MGGEHR
Trigger: CCTGTGTTCACCTCCCATGCACCCAGCATTGTCTTT...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTACAATGCTGGGTGCATaGGAGGTGAACACAGGAAGT +
Preference number: 2 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSTMLGA*EVNTGS
Trigger: ACTTCCTGTGTTCACCTCCCATGCACCCAGCATTGT...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR TCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCCATGCCACTGGTTCGTaGACTTCATTGGACAAGAAA +
Preference number: 2 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGHATGS*TSLDKK
Trigger: TTTCTTGTCCAATGAAGTTCACGAACCAGTGGCATG...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR TCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACGGACAATTGTCCAAATaGTCCTACTCATACACTGTA +
Preference number: 2 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNGQLSK*SYSYTV
Trigger: TACAGTGTATGAGTAGGATCATTTGGACAATTGTCC...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR TCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCGAACTAGGATCATTCTaGAACACCTGTCAGATTGGC +
Preference number: 2 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGELGSF*NTCQIG
Trigger: GCCAATCTGACAGGTGTTTCAGAATGATCCTAGTTC...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR GCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGCCAGCAACACACAGTTaGCATAGAAAAGCTCGAGCA +
Preference number: 2 (lower is better)
Translates to: HHLSYREVILVGSTEQVQPATHS*HRKARA
Trigger: TGCTCGAGCTTTTCTATGGCAACTGTGTGTTGCTGG...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACCTTATTTCCTCCGTTTaGCATTTGGTTTCTGTGAAG +
Preference number: 2 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNLISSV*HLVSVK
Trigger: CTTCACAGAAACCAAATGCCAAACGGAGGAAATAAG...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR TCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTTTTACGAGAGCTAACTaGTCATGCTGTGCATGCTTC +
Preference number: 2 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSFTRAN*SCCACF
Trigger: GAAGCATGCACAGCATGATCAGTTAGCTCTCGTAAA...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR TCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTCATGCCACTGGTTCGTaGACTTCATTGGACAAGAAA +
Preference number: 2 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSHATGS*TSLDKK
Trigger: TTTCTTGTCCAATGAAGTTCACGAACCAGTGGCATG...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR TCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGTAGGAGGGCCACTCTaGACACTTTTCAAATGTACA +
Preference number: 2 (lower is better)
Translates to: HHLSYREVILVGSTEQVQVGGPL*TLFKCT
Trigger: TGTACATTTGAAAAGTGTTCAGAGTGGCCCTCCTAC...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR TCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTGTAGGAGGGCCACTCTaGACACTTTTCAAATGTACA +
Preference number: 2 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSVGGPL*TLFKCT
Trigger: TGTACATTTGAAAAGTGTTCAGAGTGGCCCTCCTAC...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR TCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGAACTAGGATCATTCTaGAACACCTGTCAGATTGGC +
Preference number: 2 (lower is better)
Translates to: HHLSYREVILVGSTEQVQELGSF*NTCQIG
Trigger: GCCAATCTGACAGGTGTTTCAGAATGATCCTAGTTC...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR TCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTTCAGGTGAGTGCTGCTaGAAATCACCAACTTTGTCA +
Preference number: 2 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSSGECC*KSPTLS
Trigger: TGACAAAGTTGGTGATTTTCAGCAGCACTCACCTGA...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR GCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAAATGTTTTACGCAATCTaGTCTCCAGGCATTAAAACG +
Preference number: 2 (lower is better)
Translates to: TSLKASSPITGKPETCREMFYAI*SPGIKT
Trigger: CGTTTTAATGCCTGGAGAGCAGATTGCGTAAAACAT...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR GCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGAAGCTCGCTGATGCCTaGTATACAGATGTTTTACGC +
Preference number: 2 (lower is better)
Translates to: HHLSYREVILVGSTEQVQKLADA*YTDVLR
Trigger: GCGTAAAACATCTGTATAGCAGGCATCAGCGAGCTT...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACACAAGAGAATTTTTGTaGTTTGGATGGGTGTTTAGG +
Preference number: 2 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNTREFL*FGWVFR
Trigger: CCTAAACACCCATCCAAACCACAAAAATTCTCTTGT...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR GCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCGAAAAGTATAATGCATaGCACTGGTTCGTGAACTTC +
Preference number: 2 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGEKYNA*HWFVNF
Trigger: GAAGTTCACGAACCAGTGGCATGCATTATACTTTTC...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCTATAATGCATGCCACTaGTTCGTGAACTTCATTGGA +
Preference number: 2 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGYNACH*FVNFIG
Trigger: TCCAATGAAGTTCACGAACCAGTGGCATGCATTATA...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACAGATTTTTATGCTGCTaGATTCAAAGGCATCACTTA +
Preference number: 2 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNRFLCC*IQRHHL
Trigger: TAAGTGATGCCTTTGAATCCAGCAGCATAAAAATCT...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR CAA 90 bp TTTGTTGCGAAGTTGATGTCTCTTAATGGTCATGTCTTCTACAAGTaGTCCTCTGCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAG +
Preference number: 2 (lower is better)
Translates to: FVAKLMSLNGHVFYK*SSALLLIHRKEVTK
Trigger: CTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGCAGAGGACAACTTGTAGAAGACATGACCATTAAGAGACATCAACTTCGCAACAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR TCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTGGACAATTGTCCAAATaGTCCTACTCATACACTGTA +
Preference number: 2 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSGQLSK*SYSYTV
Trigger: TACAGTGTATGAGTAGGATCATTTGGACAATTGTCC...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR GCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTATGTTTTACGCAATCTaGTCTCCAGGCATTAAAACG +
Preference number: 2 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSMFYAI*SPGIKT
Trigger: CGTTTTAATGCCTGGAGAGCAGATTGCGTAAAACAT...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR GCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGAAAAGTATAATGCATaGCACTGGTTCGTGAACTTC +
Preference number: 2 (lower is better)
Translates to: HHLSYREVILVGSTEQVQEKYNA*HWFVNF
Trigger: GAAGTTCACGAACCAGTGGCATGCATTATACTTTTC...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCGGCATTAAAACGACATaGCATGTTCATGGCATAATT +
Preference number: 2 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGGIKTT*HVHGII
Trigger: AATTATGCCATGAACATGCCATGTCGTTTTAATGCC...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGTATAATGCATGCCACTaGTTCGTGAACTTCATTGGA +
Preference number: 2 (lower is better)
Translates to: HHLSYREVILVGSTEQVQYNACH*FVNFIG
Trigger: TCCAATGAAGTTCACGAACCAGTGGCATGCATTATA...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR TCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGTCATCTTCACAGTTTaGCAGTTCATAATGCAATCA +
Preference number: 2 (lower is better)
Translates to: HHLSYREVILVGSTEQVQVIFTV*QFIMQS
Trigger: TGATTGCATTATGAACTGTCAAACTGTGAAGATGAC...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR GCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCTGTTTGTTAAATCCCTaGTGTAACTCTGATTTATCC +
Preference number: 2 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGCLLNP*CNSDLS
Trigger: GGATAAATCAGAGTTACAGCAGGGATTTAACAAACA...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTGGCATTAAAACGACATaGCATGTTCATGGCATAATT +
Preference number: 2 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSGIKTT*HVHGII
Trigger: AATTATGCCATGAACATGCCATGTCGTTTTAATGCC...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR CAA 90 bp TCTTGGAGAAACTGGGAGGGCTTACTTATTTCCTCCGTTTGGCATTaGGTTTCTGTGAAGTATTATTTGAACAGGCCCAAGTCAATTAGT +
Preference number: 2 (lower is better)
Translates to: SWRNWEGLLISSVWH*VSVKYYLNRPKSIS
Trigger: ACTAATTGACTTGGGCCTGTTCAAATAATACTTCACAGAAACCAAATGCCAAACGGAGGAAATAAGTAAGCCCTCCCAGTTTCTCCAAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR GCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGTGTTTGTTAAATCCCTaGTGTAACTCTGATTTATCC +
Preference number: 2 (lower is better)
Translates to: HHLSYREVILVGSTEQVQCLLNP*CNSDLS
Trigger: GGATAAATCAGAGTTACAGCAGGGATTTAACAAACA...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTAGATTTTTATGCTGCTaGATTCAAAGGCATCACTTA +
Preference number: 2 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSRFLCC*IQRHHL
Trigger: TAAGTGATGCCTTTGAATCCAGCAGCATAAAAATCT...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CAA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACAGGCAAGCCAGAAACTaGCAGGGAATACCCTCTCTG +
Preference number: 3 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNRQARN*QGIPSL
Trigger: CAGAGAGGGTATTCCCTGCAAGTTTCTGGCTTGCCT...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CAA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAACTCTGTGTAAGACTGTaGATTGCCGCCCCTAGACAG +
Preference number: 3 (lower is better)
Translates to: TSLKASSPITGKPETCRELCVRL*IAAPRQ
Trigger: CTGTCTAGGGGCGGCAATCAACAGTCTTACACAGAG...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CAA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCCTCTGTGTAAGACTGTaGATTGCCGCCCCTAGACAG +
Preference number: 3 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGLCVRL*IAAPRQ
Trigger: CTGTCTAGGGGCGGCAATCAACAGTCTTACACAGAG...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR TCA 72 bp ACAGGTGCAGGCGCTCACAGCTCAGGTGAGTGCTGCTaGAAATCACCAACTTTGTCATTTTACAGCTTTGGC +
Preference number: 3 (lower is better)
Translates to: TGAGAHSSGECC*KSPTLSFYSFG
Trigger: GCCAAAGCTGTAAAATGACAAAGTTGGTGATTTTCAGCAGCACTCACCTGAGCTGTGAGCGCCTGCACCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR TCA 72 bp CTCATGCATAAAAGACAATGCTGGGTGCATGGGAGGTaGACACAGGAAGTCCTAGCACTCTCGCCTACTAAC +
Preference number: 3 (lower is better)
Translates to: LMHKRQCWVHGR*TQEVLALSPTN
Trigger: GTTAGTAGGCGAGAGTGCTAGGACTTCCTGTGTTCACCTCCCATGCACCCAGCATTGTCTTTTATGCATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CAA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTTATTGCAAGGGCACATaGTCCCCCAATCTCATCTAC +
Preference number: 3 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSYCKGT*SPNLIY
Trigger: GTAGATGAGATTGGGGGACAATGTGCCCTTGCAATA...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CAA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACTCTGTGAAGTATTATTaGAACAGGCCCAAGTCAATT +
Preference number: 3 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNSVKYY*NRPKSI
Trigger: AATTGACTTGGGCCTGTTCAAATAATACTTCACAGA...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CAA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACTGTCATTTTACAGCTTaGGCCTTCAAGAAAAACACT +
Preference number: 3 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNCHFTA*AFKKNT
Trigger: AGTGTTTTTCTTGAAGGCCAAAGCTGTAAAATGACA...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CAA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACGAGAATTTTTGTGGTTaGGATGGGTGTTTAGGAATT +
Preference number: 3 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNENFCG*DGCLGI
Trigger: AATTCCTAAACACCCATCCAAACCACAAAAATTCTC...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CAA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAAAAGAAGCAGGTATCTTaGCTGGTTATATTGATTTGC +
Preference number: 3 (lower is better)
Translates to: TSLKASSPITGKPETCREKKQVS*LVILIC
Trigger: GCAAATCAATATAACCAGCAAAGATACCTGCTTCTT...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CAA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCAGTTTCCAAACCATATaGATCCACCCTGTGGTTTTT +
Preference number: 3 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGSFQTI*IHPVVF
Trigger: AAAAACCACAGGGTGGATCAATATGGTTTGGAAACT...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CAA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCTCCTCCGTTTGGCATTaGGTTTCTGTGAAGTATTAT +
Preference number: 3 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGSSVWH*VSVKYY
Trigger: ATAATACTTCACAGAAACCAAATGCCAAACGGAGGA...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CAA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCACTTATTTCCTCCGTTaGGCATTTGGTTTCTGTGAA +
Preference number: 3 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGTYFLR*AFGFCE
Trigger: TTCACAGAAACCAAATGCCAAACGGAGGAAATAAGT...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CAA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCGGTCATCTTCACAGTTaGACAGTTCATAATGCAATC +
Preference number: 3 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGGHLHS*TVHNAI
Trigger: GATTGCATTATGAACTGTCAAACTGTGAAGATGACC...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CAA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTCTAATTTTCAATTCATaGCCAGGTAGTGGCATCTGC +
Preference number: 3 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSLIFNS*PGSGIC
Trigger: GCAGATGCCACTACCTGGCAATGAATTGAAAATTAG...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CAA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGTCCTCCGTTTGGCATTaGGTTTCTGTGAAGTATTAT +
Preference number: 3 (lower is better)
Translates to: HHLSYREVILVGSTEQVQSSVWH*VSVKYY
Trigger: ATAATACTTCACAGAAACCAAATGCCAAACGGAGGA...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CAA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTACTTATTTCCTCCGTTaGGCATTTGGTTTCTGTGAA +
Preference number: 3 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSTYFLR*AFGFCE
Trigger: TTCACAGAAACCAAATGCCAAACGGAGGAAATAAGT...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CAA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGGTCATCTTCACAGTTaGACAGTTCATAATGCAATC +
Preference number: 3 (lower is better)
Translates to: HHLSYREVILVGSTEQVQGHLHS*TVHNAI
Trigger: GATTGCATTATGAACTGTCAAACTGTGAAGATGACC...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CAA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCTGTCATTTTACAGCTTaGGCCTTCAAGAAAAACACT +
Preference number: 3 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGCHFTA*AFKKNT
Trigger: AGTGTTTTTCTTGAAGGCCAAAGCTGTAAAATGACA...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR-3UTR CAA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTATGATGATGAGACTTTaGCCCTTTGAAAATCCCTTT +
Preference number: 3 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSMMMRL*PFENPF
Trigger: AAAGGGATTTTCAAAGGGCAAAAGTCTCATCATCAT...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR GCA 72 bp AAAAATCACCACATTTATAAGAAGCTCGCTGATGCCTaGTATACAGATGTTTTACGCAATCTGCTCTCCAGG +
Preference number: 3 (lower is better)
Translates to: KNHHIYKKLADA*YTDVLRNLLSR
Trigger: CCTGGAGAGCAGATTGCGTAAAACATCTGTATAGCAGGCATCAGCGAGCTTCTTATAAATGTGGTGATTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR TCA 72 bp AATCCTTGTATCCTTGTCTTATATTTGTTGCGAAGTTaGTGTCTCTTAATGGTCATGTCTTCTACAAGTTGT +
Preference number: 3 (lower is better)
Translates to: NPCILVLYLLRS*CLLMVMSSTSC
Trigger: ACAACTTGTAGAAGACATGACCATTAAGAGACATCAACTTCGCAACAAATATAAGACAAGGATACAAGGATT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACCGCTTGAGCTGCTGCTaGTCCGCTCTGGGCTCGGCG +
Preference number: 4 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNRLSCC*SALGSA
Trigger: CGCCGAGCCCAGAGCGGACCAGCAGCAGCTCAAGCG...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAACCGCAGCGCTTGAGCTaGTGCTGGTCCGCTCTGGGC +
Preference number: 4 (lower is better)
Translates to: TSLKASSPITGKPETCREPQRLS*CWSALG
Trigger: GCCCAGAGCGGACCAGCAGCAGCTCAAGCGCTGCGG...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAACAGCGCTTGAGCTGCTaGTGGTCCGCTCTGGGCTCG +
Preference number: 4 (lower is better)
Translates to: TSLKASSPITGKPETCREQRLSC*WSALGS
Trigger: CGAGCCCAGAGCGGACCAGCAGCAGCTCAAGCGCTG...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCCCGCAGCGCTTGAGCTaGTGCTGGTCCGCTCTGGGC +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGPQRLS*CWSALG
Trigger: GCCCAGAGCGGACCAGCAGCAGCTCAAGCGCTGCGG...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGCGCTTGAGCTGCTGCTaGTCCGCTCTGGGCTCGGCG +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQRLSCC*SALGSA
Trigger: CGCCGAGCCCAGAGCGGACCAGCAGCAGCTCAAGCG...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCAGCTTGTGCTGGCCCTaGGGGGCTTGGGCCTCCGTA +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGSLCWP*GAWASV
Trigger: TACGGAGGCCCAAGCCCCCCAGGGCCAGCACAAGCT...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACAACCAGAGTCATCTCTaGCAGCCTCAGATCGCGGGG +
Preference number: 4 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNNQSHL*QPQIAG
Trigger: CCCCGCGATCTGAGGCTGTCAGAGATGACTCTGGTT...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCGCTCCCCGGTCTCCCTaGAAAGGAGCTTGTGCTGGC +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGAPRSP*KGACAG
Trigger: GCCAGCACAAGCTCCTTTGCAGGGAGACCGGGGAGC...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACCATGTCCCCTGTCCCTaGAATCCTGTCCCTAGGACC +
Preference number: 4 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNHVPCP*NPVPRT
Trigger: GGTCCTAGGGACAGGATTGCAGGGACAGGGGACATG...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTAGCTTGTGCTGGCCCTaGGGGGCTTGGGCCTCCGTA +
Preference number: 4 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSSLCWP*GAWASV
Trigger: TACGGAGGCCCAAGCCCCCCAGGGCCAGCACAAGCT...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCTCCCCGGTCTCCCTaGAAAGGAGCTTGTGCTGGC +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQAPRSP*KGACAG
Trigger: GCCAGCACAAGCTCCTTTGCAGGGAGACCGGGGAGC...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCAACCAGAGTCATCTCTaGCAGCCTCAGATCGCGGGG +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGNQSHL*QPQIAG
Trigger: CCCCGCGATCTGAGGCTGTCAGAGATGACTCTGGTT...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAATGGGTGCATGGGAGGTaGACACAGGAAGTCCTAGCA +
Preference number: 4 (lower is better)
Translates to: TSLKASSPITGKPETCREWVHGR*TQEVLA
Trigger: TGCTAGGACTTCCTGTGTTCACCTCCCATGCACCCA...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCCATGTCCCCTGTCCCTaGAATCCTGTCCCTAGGACC +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGHVPCP*NPVPRT
Trigger: GGTCCTAGGGACAGGATTGCAGGGACAGGGGACATG...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACCTCTTTGGCCATCCGTaGTCGTTTTCGGTAAGGGCA +
Preference number: 4 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNLFGHP*SFSVRA
Trigger: TGCCCTTACCGAAAACGACCACGGATGGCCAAAGAG...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCTTTCCCACAGGTTCGTaGCTGAGGGGGCCACCATCT +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGFPTGS*LRGPPS
Trigger: AGATGGTGGCCCCCTCAGCCACGAACCTGTGGGAAA...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCCGCTCACAGCTCAGGTaGGTGCTGCTGAAAATCACC +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGRSQLR*VLLKIT
Trigger: GGTGATTTTCAGCAGCACTCACCTGAGCTGTGAGCG...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCTGGGTGCATGGGAGGTaGACACAGGAAGTCCTAGCA +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGWVHGR*TQEVLA
Trigger: TGCTAGGACTTCCTGTGTTCACCTCCCATGCACCCA...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAATCGAGCAGCCCGTGCTaGTTTCTAACAGCTCTCTCT +
Preference number: 4 (lower is better)
Translates to: TSLKASSPITGKPETCRESSSPC*FLTALS
Trigger: AGAGAGAGCTGTTAGAAAGCAGCACGGGCTGCTCGA...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCAGCTCGAGCAGCCCGTaGTGCTTTCTAACAGCTCTC +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGSSSSP*CFLTAL
Trigger: GAGAGCTGTTAGAAAGCAGCACGGGCTGCTCGAGCT...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACAAAGACAATGCTGGGTaGATGGGAGGTGAACACAGG +
Preference number: 4 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNKDNAG*MGGEHR
Trigger: CCTGTGTTCACCTCCCATGCACCCAGCATTGTCTTT...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGTTTCCCACAGGTTCGTaGCTGAGGGGGCCACCATCT +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQFPTGS*LRGPPS
Trigger: AGATGGTGGCCCCCTCAGCCACGAACCTGTGGGAAA...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAACTGCTGAGTGGTGGGTaGAAATCCTCTTCTTCCACA +
Preference number: 4 (lower is better)
Translates to: TSLKASSPITGKPETCRELLSGG*KSSSST
Trigger: TGTGGAAGAAGAGGATTTTCACCCACCACTCAGCAG...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTCGCTCACAGCTCAGGTaGGTGCTGCTGAAAATCACC +
Preference number: 4 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSRSQLR*VLLKIT
Trigger: GGTGATTTTCAGCAGCACTCACCTGAGCTGTGAGCG...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAAGGCAAGCCAGAAACTTaGAGGGAATACCCTCTCTGT +
Preference number: 4 (lower is better)
Translates to: TSLKASSPITGKPETCREGKPET*REYPLC
Trigger: ACAGAGAGGGTATTCCCTGCAAGTTTCTGGCTTGCC...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACCCAGCAACACACAGTTaGCATAGAAAAGCTCGAGCA +
Preference number: 4 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNPATHS*HRKARA
Trigger: TGCTCGAGCTTTTCTATGGCAACTGTGTGTTGCTGG...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACACAGCTGCTGAGTGGTaGGTGAAAATCCTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNTAAEW*VKILFF
Trigger: GAAGAAGAGGATTTTCACCCACCACTCAGCAGCTGT...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACCATGCCACTGGTTCGTaGACTTCATTGGACAAGAAA +
Preference number: 4 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNHATGS*TSLDKK
Trigger: TTTCTTGTCCAATGAAGTTCACGAACCAGTGGCATG...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAAGAGACTTTTGCCCTTTaGAAATCCCTTTGCCAGACC +
Preference number: 4 (lower is better)
Translates to: TSLKASSPITGKPETCREETFAL*KSLCQT
Trigger: GGTCTGGCAAAGGGATTTTCAAAGGGCAAAAGTCTC...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAAGCCTCCCATAGTGTTTaGTACCCAGCAATTTCAGCA +
Preference number: 4 (lower is better)
Translates to: TSLKASSPITGKPETCREASHSV*YPAISA
Trigger: TGCTGAAATTGCTGGGTACCAAACACTATGGGAGGC...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAAACAGCTGCTGAGTGGTaGGTGAAAATCCTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: TSLKASSPITGKPETCRETAAEW*VKILFF
Trigger: GAAGAAGAGGATTTTCACCCACCACTCAGCAGCTGT...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAAGCCATAAACCACTCTTaGGCAGAGGTGCCATTGAAA +
Preference number: 4 (lower is better)
Translates to: TSLKASSPITGKPETCREAINHS*AEVPLK
Trigger: TTTCAATGGCACCTCTGCCCAAGAGTGGTTTATGGC...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGCTCTTTGGCCATCCGTaGTCGTTTTCGGTAAGGGCA +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQLFGHP*SFSVRA
Trigger: TGCCCTTACCGAAAACGACCACGGATGGCCAAAGAG...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACACATCAAAATCCACCTaGCGGGAACAACTCGGTAAA +
Preference number: 4 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNTSKST*REQLGK
Trigger: TTTACCGAGTTGTTCCCGCCAGGTGGATTTTGATGT...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACGGCCACCATCTCTGTTaGTGTCATCATTTGCTTTCT +
Preference number: 4 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNGHHLC*CHHLLS
Trigger: AGAAAGCAAATGATGACACCAACAGAGATGGTGGCC...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAATTTAGCAGGAAGAGTTaGCTGGAGTGGAAGGAAGGA +
Preference number: 4 (lower is better)
Translates to: TSLKASSPITGKPETCREFSRKS*LEWKEG
Trigger: TCCTTCCTTCCACTCCAGCCAACTCTTCCTGCTAAA...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTCTGCTGAGTGGTGGGTaGAAATCCTCTTCTTCCACA +
Preference number: 4 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSLLSGG*KSSSST
Trigger: TGTGGAAGAAGAGGATTTTCACCCACCACTCAGCAG...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGTATGGCTACAGCTGCTaGGTGGTGGGTGAAAATCCT +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQYGYSC*VVGENP
Trigger: AGGATTTTCACCCACCACTCAGCAGCTGTAGCCATA...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACAATTTGGCCTTTTCCTaGACACCAAGTGATCTGACA +
Preference number: 4 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNNLAFS*TPSDLT
Trigger: TGTCAGATCACTTGGTGTTCAGGAAAAGGCCAAATT...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAATCAGGTGAGTGCTGCTaGAAATCACCAACTTTGTCA +
Preference number: 4 (lower is better)
Translates to: TSLKASSPITGKPETCRESGECC*KSPTLS
Trigger: TGACAAAGTTGGTGATTTTCAGCAGCACTCACCTGA...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGAAAGACAATGCTGGGTaGATGGGAGGTGAACACAGG +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQKDNAG*MGGEHR
Trigger: CCTGTGTTCACCTCCCATGCACCCAGCATTGTCTTT...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCCTACAAGTTGTCCTCTaGTCTGCTCCTGATACACAG +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGLQVVL*SAPDTQ
Trigger: CTGTGTATCAGGAGCAGAGCAGAGGACAACTTGTAG...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCCTCCTTCCGAGACAATaGGCTCGCAGAATCTATTCA +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGLLPRQ*ARRIYS
Trigger: TGAATAGATTCTGCGAGCCCATTGTCTCGGAAGGAG...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTGCTACAGCTGCTGAGTaGTGGGTGAAAATCCTCTTC +
Preference number: 4 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSATAAE*WVKILF
Trigger: GAAGAGGATTTTCACCCACCACTCAGCAGCTGTAGC...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGACAATGCTGGGTGCATaGGAGGTGAACACAGGAAGT +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQTMLGA*EVNTGS
Trigger: ACTTCCTGTGTTCACCTCCCATGCACCCAGCATTGT...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCTTTACGAGAGCTAACTaGTCATGCTGTGCATGCTTC +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGFTRAN*SCCACF
Trigger: GAAGCATGCACAGCATGATCAGTTAGCTCTCGTAAA...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAATTCCTCCATCCCTATTaGAAAAACGGCGAATCCAAA +
Preference number: 4 (lower is better)
Translates to: TSLKASSPITGKPETCREFLHPY*KNGESK
Trigger: TTTGGATTCGCCGTTTTTTCAATAGGGATGGAGGAA...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCGTAGGAGGGCCACTCTaGACACTTTTCAAATGTACA +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGVGGPL*TLFKCT
Trigger: TGTACATTTGAAAAGTGTTCAGAGTGGCCCTCCTAC...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCTCAGGTGAGTGCTGCTaGAAATCACCAACTTTGTCA +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGSGECC*KSPTLS
Trigger: TGACAAAGTTGGTGATTTTCAGCAGCACTCACCTGA...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCAGATATAACTTACTATaGAGGGTGTCCTGGCCACTC +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGRYNLL*RVSWPL
Trigger: GAGTGGCCAGGACACCCTTCATAGTAAGTTATATCT...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTGAGACTTTTGCCCTTTaGAAATCCCTTTGCCAGACC +
Preference number: 4 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSETFAL*KSLCQT
Trigger: GGTCTGGCAAAGGGATTTTCAAAGGGCAAAAGTCTC...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACATGTTTTACGCAATCTaGTCTCCAGGCATTAAAACG +
Preference number: 4 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNMFYAI*SPGIKT
Trigger: CGTTTTAATGCCTGGAGAGCAGATTGCGTAAAACAT...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACGAAAAGTATAATGCATaGCACTGGTTCGTGAACTTC +
Preference number: 4 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNEKYNA*HWFVNF
Trigger: GAAGTTCACGAACCAGTGGCATGCATTATACTTTTC...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACAGGTCACGCCAAAGATaGTTTCCCCTAATTTTCAAT +
Preference number: 4 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNRSRQR*FPLIFN
Trigger: ATTGAAAATTAGGGGAAAGCATCTTTGGCGTGACCT...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGCTACAAGTTGTCCTCTaGTCTGCTCCTGATACACAG +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQLQVVL*SAPDTQ
Trigger: CTGTGTATCAGGAGCAGAGCAGAGGACAACTTGTAG...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTCTCCTTCCGAGACAATaGGCTCGCAGAATCTATTCA +
Preference number: 4 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSLLPRQ*ARRIYS
Trigger: TGAATAGATTCTGCGAGCCCATTGTCTCGGAAGGAG...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAAATTGAGATGGTTTTATaGCTACAGCTGCTGAGTGGT +
Preference number: 4 (lower is better)
Translates to: TSLKASSPITGKPETCREIEMVL*LQLLSG
Trigger: ACCACTCAGCAGCTGTAGCCATAAAACCATCTCAAT...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACCCTCAAAAATTGAGATaGTTTTATGGCTACAGCTGC +
Preference number: 4 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNPQKLR*FYGYSC
Trigger: GCAGCTGTAGCCATAAAACCATCTCAATTTTTGAGG...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCTTTCACATTCCTCTTTaGCCATCCGTGGTCGTTTTC +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGFHIPL*PSVVVF
Trigger: GAAAACGACCACGGATGGCCAAAGAGGAATGTGAAA...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCGGCCACCATCTCTGTTaGTGTCATCATTTGCTTTCT +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGGHHLC*CHHLLS
Trigger: AGAAAGCAAATGATGACACCAACAGAGATGGTGGCC...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGTTTAGCAGGAAGAGTTaGCTGGAGTGGAAGGAAGGA +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQFSRKS*LEWKEG
Trigger: TCCTTCCTTCCACTCCAGCCAACTCTTCCTGCTAAA...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAATCATTCTTCTCTTCATaGGACAGTTCTGCACCTAGT +
Preference number: 4 (lower is better)
Translates to: TSLKASSPITGKPETCRESFFSS*DSSAPS
Trigger: ACTAGGTGCAGAACTGTCCCATGAAGAGAAGAATGA...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR CAA 72 bp GAAACTTGCAGGGAATACCCTCTCTGTGTAAGACTGTaGATTGCCGCCCCTAGACAGGTGTGTTTCATTATG +
Preference number: 4 (lower is better)
Translates to: ETCREYPLCVRL*IAAPRQVCFIM
Trigger: CATAATGAAACACACCTGTCTAGGGGCGGCAATCAACAGTCTTACACAGAGAGGGTATTCCCTGCAAGTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR CAA 72 bp AAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTaGCAGGGAATACCCTCTCTGTGTAAGACTGTTGAT +
Preference number: 4 (lower is better)
Translates to: KSLITHHRQARN*QGIPSLCKTVD
Trigger: ATCAACAGTCTTACACAGAGAGGGTATTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAATTCCTGAACACCAAGTaGTCTGACATTAGTGACAAA +
Preference number: 4 (lower is better)
Translates to: TSLKASSPITGKPETCREFLNTK*SDISDK
Trigger: TTTGTCACTAATGTCAGATCACTTGGTGTTCAGGAA...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGTTTACGAGAGCTAACTaGTCATGCTGTGCATGCTTC +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQFTRAN*SCCACF
Trigger: GAAGCATGCACAGCATGATCAGTTAGCTCTCGTAAA...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGCATGCCACTGGTTCGTaGACTTCATTGGACAAGAAA +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQHATGS*TSLDKK
Trigger: TTTCTTGTCCAATGAAGTTCACGAACCAGTGGCATG...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGAGATATAACTTACTATaGAGGGTGTCCTGGCCACTC +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQRYNLL*RVSWPL
Trigger: GAGTGGCCAGGACACCCTTCATAGTAAGTTATATCT...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACTTTTACTTCCTTTGCTaGAGCACAGTTTGTTACTTG +
Preference number: 4 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNFYFLC*STVCYL
Trigger: CAAGTAACAAACTGTGCTGCAGCAAAGGAAGTAAAA...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAAATTTCATTAATGATATaGACCCAGATGCCTAGGGGA +
Preference number: 4 (lower is better)
Translates to: TSLKASSPITGKPETCREISLMI*TQMPRG
Trigger: TCCCCTAGGCATCTGGGTGCATATCATTAATGAAAT...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCATTGAGATGGTTTTATaGCTACAGCTGCTGAGTGGT +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGIEMVL*LQLLSG
Trigger: ACCACTCAGCAGCTGTAGCCATAAAACCATCTCAAT...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGACATCAAAATCCACCTaGCGGGAACAACTCGGTAAA +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQTSKST*REQLGK
Trigger: TTTACCGAGTTGTTCCCGCCAGGTGGATTTTGATGT...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACGGCATTAAAACGACATaGCATGTTCATGGCATAATT +
Preference number: 4 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNGIKTT*HVHGII
Trigger: AATTATGCCATGAACATGCCATGTCGTTTTAATGCC...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCTCATTCTTCTCTTCATaGGACAGTTCTGCACCTAGT +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGSFFSS*DSSAPS
Trigger: ACTAGGTGCAGAACTGTCCCATGAAGAGAAGAATGA...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGTTCCTCCATCCCTATTaGAAAAACGGCGAATCCAAA +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQFLHPY*KNGESK
Trigger: TTTGGATTCGCCGTTTTTTCAATAGGGATGGAGGAA...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCGGACAATTGTCCAAATaGTCCTACTCATACACTGTA +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGGQLSK*SYSYTV
Trigger: TACAGTGTATGAGTAGGATCATTTGGACAATTGTCC...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAAGTCATCTTCACAGTTTaGCAGTTCATAATGCAATCA +
Preference number: 4 (lower is better)
Translates to: TSLKASSPITGKPETCREVIFTV*QFIMQS
Trigger: TGATTGCATTATGAACTGTCAAACTGTGAAGATGAC...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAATATTTGTTGCGAAGTTaGTGTCTCTTAATGGTCATG +
Preference number: 4 (lower is better)
Translates to: TSLKASSPITGKPETCREYLLRS*CLLMVM
Trigger: CATGACCATTAAGAGACATCAACTTCGCAACAAATA...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCATGTTTTACGCAATCTaGTCTCCAGGCATTAAAACG +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGMFYAI*SPGIKT
Trigger: CGTTTTAATGCCTGGAGAGCAGATTGCGTAAAACAT...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACTCTCATCATTTAATTTaGCCTTTTCCTGAACACCAA +
Preference number: 4 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNSHHLI*PFPEHQ
Trigger: TTGGTGTTCAGGAAAAGGCCAAATTAAATGATGAGA...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCCTTATTTCCTCCGTTTaGCATTTGGTTTCTGTGAAG +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGLISSV*HLVSVK
Trigger: CTTCACAGAAACCAAATGCCAAACGGAGGAAATAAG...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCAAGGAAGTCACCAAGTaGAGCTGTAATACAAGTTCA +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGKEVTK*SCNTSS
Trigger: TGAACTTGTATTACAGCTCCACTTGGTGACTTCCTT...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTTTCCTGAACACCAAGTaGTCTGACATTAGTGACAAA +
Preference number: 4 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSFLNTK*SDISDK
Trigger: TTTGTCACTAATGTCAGATCACTTGGTGTTCAGGAA...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGTGCTTCAAAGTTCGGTaGGAAGATGGCTCATATTTT +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQCFKVR*EDGSYF
Trigger: AAAATATGAGCCATCTTCTCACCGAACTTTGAAGCA...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTTGCTTCAAAGTTCGGTaGGAAGATGGCTCATATTTT +
Preference number: 4 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSCFKVR*EDGSYF
Trigger: AAAATATGAGCCATCTTCTCACCGAACTTTGAAGCA...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGGACAATTGTCCAAATaGTCCTACTCATACACTGTA +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQGQLSK*SYSYTV
Trigger: TACAGTGTATGAGTAGGATCATTTGGACAATTGTCC...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCCATAAAATTGGCCTTTaGACTCAAAAGCAAGGTCAT +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGHKIGL*TQKQGH
Trigger: ATGACCTTGCTTTTGAGTGCAAAGGCCAATTTTATG...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAATGTTTGTTAAATCCCTaGTGTAACTCTGATTTATCC +
Preference number: 4 (lower is better)
Translates to: TSLKASSPITGKPETCRECLLNP*CNSDLS
Trigger: GGATAAATCAGAGTTACAGCAGGGATTTAACAAACA...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTAGGTCACGCCAAAGATaGTTTCCCCTAATTTTCAAT +
Preference number: 4 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSRSRQR*FPLIFN
Trigger: ATTGAAAATTAGGGGAAAGCATCTTTGGCGTGACCT...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGCCTCAAAAATTGAGATaGTTTTATGGCTACAGCTGC +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQPQKLR*FYGYSC
Trigger: GCAGCTGTAGCCATAAAACCATCTCAATTTTTGAGG...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCAGTTCGGTGAGAAGATaGCTCATATTTTACTTCCTT +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGSSVRR*LIFYFL
Trigger: AAGGAAGTAAAATATGAGCCATCTTCTCACCGAACT...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTCTTATTTCCTCCGTTTaGCATTTGGTTTCTGTGAAG +
Preference number: 4 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSLISSV*HLVSVK
Trigger: CTTCACAGAAACCAAATGCCAAACGGAGGAAATAAG...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGAAGGAAGTCACCAAGTaGAGCTGTAATACAAGTTCA +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQKEVTK*SCNTSS
Trigger: TGAACTTGTATTACAGCTCCACTTGGTGACTTCCTT...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR CAA 72 bp AACTGGGAGGGCTTACTTATTTCCTCCGTTTGGCATTaGGTTTCTGTGAAGTATTATTTGAACAGGCCCAAG +
Preference number: 4 (lower is better)
Translates to: NWEGLLISSVWH*VSVKYYLNRPK
Trigger: CTTGGGCCTGTTCAAATAATACTTCACAGAAACCAAATGCCAAACGGAGGAAATAAGTAAGCCCTCCCAGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGTCGTTCCTCAAAAATTaGGATGGTTTTATGGCTACA +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQSFLKN*DGFMAT
Trigger: TGTAGCCATAAAACCATCTCAATTTTTGAGGAACGA...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR TCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGTATTTGTTGCGAAGTTaGTGTCTCTTAATGGTCATG +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQYLLRS*CLLMVM
Trigger: CATGACCATTAAGAGACATCAACTTCGCAACAAATA...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGCATAAAATTGGCCTTTaGACTCAAAAGCAAGGTCAT +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQHKIGL*TQKQGH
Trigger: ATGACCTTGCTTTTGAGTGCAAAGGCCAATTTTATG...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR GCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTTTTTACTTCCTTTGCTaGAGCACAGTTTGTTACTTG +
Preference number: 4 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSFYFLC*STVCYL
Trigger: CAAGTAACAAACTGTGCTGCAGCAAAGGAAGTAAAA...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCTCTCATCATTTAATTTaGCCTTTTCCTGAACACCAA +
Preference number: 4 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGSHHLI*PFPEHQ
Trigger: TTGGTGTTCAGGAAAAGGCCAAATTAAATGATGAGA...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTAGTTCGGTGAGAAGATaGCTCATATTTTACTTCCTT +
Preference number: 4 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSSSVRR*LIFYFL
Trigger: AAGGAAGTAAAATATGAGCCATCTTCTCACCGAACT...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGACAAGAGAATTTTTGTaGTTTGGATGGGTGTTTAGG +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQTREFL*FGWVFR
Trigger: CCTAAACACCCATCCAAACCACAAAAATTCTCTTGT...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CCA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGAGATTTTTATGCTGCTaGATTCAAAGGCATCACTTA +
Preference number: 4 (lower is better)
Translates to: HHLSYREVILVGSTEQVQRFLCC*IQRHHL
Trigger: TAAGTGATGCCTTTGAATCCAGCAGCATAAAAATCT...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR CAA 72 bp TACAAGTTCATAACTGGAGGGGTGGGTAGCCATGTCTaGATGGAGTTAACTATGAGCTCTAAAAATAAATAC +
Preference number: 4 (lower is better)
Translates to: YKFITGGVGSHV*MELTMSSKNKY
Trigger: GTATTTATTTTTAGAGCTCATAGTTAACTCCATCAAGACATGGCTACCCACCCCTCCAGTTATGAACTTGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
3UTR CAA 72 bp GAATCCTTGTATCCTTGTCTTATATTTGTTGCGAAGTaGATGTCTCTTAATGGTCATGTCTTCTACAAGTTG +
Preference number: 4 (lower is better)
Translates to: ESLYPCLIFVAK*MSLNGHVFYKL
Trigger: CAACTTGTAGAAGACATGACCATTAAGAGACATCAACTTCGCAACAAATATAAGACAAGGATACAAGGATTC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACCGGCGGCCGCAGCGCTaGAGCTGCTGCTGGTCCGCT +
Preference number: 5 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNRRPQR*SCCWSA
Trigger: AGCGGACCAGCAGCAGCTCAAGCGCTGCGGCCGCCG...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCCGGCGGCCGCAGCGCTaGAGCTGCTGCTGGTCCGCT +
Preference number: 5 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGRRPQR*SCCWSA
Trigger: AGCGGACCAGCAGCAGCTCAAGCGCTGCGGCCGCCG...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS GCA 90 bp CAGATCGTAATTCCAACTGATGCTCTGAGGTTCAGTCTGTTCCGCTaGCCCCTGCACCCTCCTCCTCTCGTTTCCGCAGGCCAGTTCCTC +
Preference number: 5 (lower is better)
Translates to: QIVIPTDALRFSLFR*PLHPPPLVSAGQFL
Trigger: GAGGAACTGGCCTGCGGAAACGAGAGGAGGAGGGTGCAGGGGGCAGCGGAACAGACTGAACCTCAGAGCATCAGTTGGAATTACGATCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490620.5
ENST00000629302.2
CDS GCA 90 bp TGCACCCTCCTCCTCTCGTTTCCGCAGGCCAGTTCCTCTACAACATaGTGGGGCTCCCTCCACTTTCTTCTCCCAAAGCAAAGCAGACAG +
Preference number: 5 (lower is better)
Translates to: CTLLLSFPQASSSTT*WGSLHFLLPKQSRQ
Trigger: CTGTCTGCTTTGCTTTGGGAGAAGAAAGTGGAGGGAGCCCCAGCATGTTGTAGAGGAACTGGCCTGCGGAAACGAGAGGAGGAGGGTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000490620.5
ENST00000629302.2
CDS CCA 90 bp AATTGGCCTTTGCACTCAAAAGCAAGGTCATTTCCCACAGGTTCGTaGCTGAGGGGGCCACCATCTCTGTTGGTGTCATCATTTGCTTTC +
Preference number: 5 (lower is better)
Translates to: NWPLHSKARSFPTGS*LRGPPSLLVSSFAF
Trigger: GAAAGCAAATGATGACACCAACAGAGATGGTGGCCCCCTCAGCCACGAACCTGTGGGAAATGACCTTGCTTTTGAGTGCAAAGGCCAATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAAGGGCCACCATCTCTGTaGGTGTCATCATTTGCTTTC +
Preference number: 5 (lower is better)
Translates to: TSLKASSPITGKPETCREGPPSL*VSSFAF
Trigger: GAAAGCAAATGATGACACCAACAGAGATGGTGGCCC...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAATTGCTGCAGCACAGTTaGTTACTTGGTGGTGAAGCC +
Preference number: 5 (lower is better)
Translates to: TSLKASSPITGKPETCRELLQHS*LLGGEA
Trigger: GGCTTCACCACCAAGTAACAAACTGTGCTGCAGCAA...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACTTTTCACATTCCTCTTaGGCCATCCGTGGTCGTTTT +
Preference number: 5 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNFSHSS*AIRGRF
Trigger: AAAACGACCACGGATGGCCAAAGAGGAATGTGAAAA...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCGGGCCACCATCTCTGTaGGTGTCATCATTTGCTTTC +
Preference number: 5 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGGPPSL*VSSFAF
Trigger: GAAAGCAAATGATGACACCAACAGAGATGGTGGCCC...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACAGCACAGTTTGTTACTaGGTGGTGAAGCCTCCTTTT +
Preference number: 5 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNSTVCY*VVKPPF
Trigger: AAAAGGAGGCTTCACCACCAAGTAACAAACTGTGCT...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCTTGCTGCAGCACAGTTaGTTACTTGGTGGTGAAGCC +
Preference number: 5 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGLLQHS*LLGGEA
Trigger: GGCTTCACCACCAAGTAACAAACTGTGCTGCAGCAA...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAATATTGCAAGGGCACATaGTCCCCCAATCTCATCTAC +
Preference number: 5 (lower is better)
Translates to: TSLKASSPITGKPETCREYCKGT*SPNLIY
Trigger: GTAGATGAGATTGGGGGACAATGTGCCCTTGCAATA...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGAGGCAAGCCAGAAACTaGCAGGGAATACCCTCTCTG +
Preference number: 5 (lower is better)
Translates to: HHLSYREVILVGSTEQVQRQARN*QGIPSL
Trigger: CAGAGAGGGTATTCCCTGCAAGTTTCTGGCTTGCCT...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAAGTGGGTAGCCATGTCTaGATGGAGTTAACTATGAGC +
Preference number: 5 (lower is better)
Translates to: TSLKASSPITGKPETCREVGSHV*MELTMS
Trigger: GCTCATAGTTAACTCCATCAAGACATGGCTACCCAC...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS CCA 90 bp ATAGTGTTTGGTACCCAGCAATTTCAGCAGCTCCTTCCGAGACAATaGGCTCGCAGAATCTATTCATGGACAGAACCAGAGTCATCTCTG +
Preference number: 5 (lower is better)
Translates to: IVFGTQQFQQLLPRQ*ARRIYSWTEPESSL
Trigger: CAGAGATGACTCTGGTTCTGTCCATGAATAGATTCTGCGAGCCCATTGTCTCGGAAGGAGCTGCTGAAATTGCTGGGTACCAAACACTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000367012.4
ENST00000482421.1
ENST00000490620.5
ENST00000626471.1
ENST00000629302.2
ENST00000630425.2
CDS CCA 90 bp AAAGCAGCAGGCATGAAACTTTTCACATTCCTCTTTGGCCATCCGTaGTCGTTTTCGGTAAGGGCAGTCTTGAGCCATAAACCACTCTTG +
Preference number: 5 (lower is better)
Translates to: KAAGMKLFTFLFGHP*SFSVRAVLSHKPLL
Trigger: CAAGAGTGGTTTATGGCTCAAGACTGCCCTTACCGAAAACGACCACGGATGGCCAAAGAGGAATGTGAAAAGTTTCATGCCTGCTGCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000367012.4
ENST00000490620.5
ENST00000629302.2
ENST00000630425.2
CDS-3UTR CAA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGAGCCATAAACCACTCTaGGGCAGAGGTGCCATTGAA +
Preference number: 5 (lower is better)
Translates to: HHLSYREVILVGSTEQVQSHKPL*GRGAIE
Trigger: TTCAATGGCACCTCTGCCCAAGAGTGGTTTATGGCT...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTTCGGTAAGGGCAGTCTaGAGCCATAAACCACTCTTG +
Preference number: 5 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSSVRAV*SHKPLL
Trigger: CAAGAGTGGTTTATGGCTCAAGACTGCCCTTACCGA...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGTCGGTAAGGGCAGTCTaGAGCCATAAACCACTCTTG +
Preference number: 5 (lower is better)
Translates to: HHLSYREVILVGSTEQVQSVRAV*SHKPLL
Trigger: CAAGAGTGGTTTATGGCTCAAGACTGCCCTTACCGA...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAATTTTCACATTCCTCTTaGGCCATCCGTGGTCGTTTT +
Preference number: 5 (lower is better)
Translates to: TSLKASSPITGKPETCREFSHSS*AIRGRF
Trigger: AAAACGACCACGGATGGCCAAAGAGGAATGTGAAAA...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAAAGCACAGTTTGTTACTaGGTGGTGAAGCCTCCTTTT +
Preference number: 5 (lower is better)
Translates to: TSLKASSPITGKPETCRESTVCY*VVKPPF
Trigger: AAAAGGAGGCTTCACCACCAAGTAACAAACTGTGCT...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCCAATTAAAGGCACTCTaGGGGAGCAAGGCAACTTTC +
Preference number: 5 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGQLKAL*GSKATF
Trigger: GAAAGTTGCCTTGCTCCCCAAGAGTGCCTTTAATTG...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCGTGGGTAGCCATGTCTaGATGGAGTTAACTATGAGC +
Preference number: 5 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGVGSHV*MELTMS
Trigger: GCTCATAGTTAACTCCATCAAGACATGGCTACCCAC...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTCATGTCTTCTACAAGTaGTCCTCTGCTCTGCTCCTG +
Preference number: 5 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSHVFYK*SSALLL
Trigger: CAGGAGCAGAGCAGAGGACAACTTGTAGAAGACATG...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACCTCGTTCCTCAAAAATaGAGATGGTTTTATGGCTAC +
Preference number: 5 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNLVPQK*RWFYGY
Trigger: GTAGCCATAAAACCATCTCAATTTTTGAGGAACGAG...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCGTGACAAAGATTTCATaGGCAGGTATCTGGCCATCA +
Preference number: 5 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGVTKIS*AGIWPS
Trigger: TGATGGCCAGATACCTGCCAATGAAATCTTTGTCAC...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGTATTGCAAGGGCACATaGTCCCCCAATCTCATCTAC +
Preference number: 5 (lower is better)
Translates to: HHLSYREVILVGSTEQVQYCKGT*SPNLIY
Trigger: GTAGATGAGATTGGGGGACAATGTGCCCTTGCAATA...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACAGTTTCCAAACCATATaGATCCACCCTGTGGTTTTT +
Preference number: 5 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNSFQTI*IHPVVF
Trigger: AAAAACCACAGGGTGGATCAATATGGTTTGGAAACT...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACACTTATTTCCTCCGTTaGGCATTTGGTTTCTGTGAA +
Preference number: 5 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNTYFLR*AFGFCE
Trigger: TTCACAGAAACCAAATGCCAAACGGAGGAAATAAGT...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGCAATTAAAGGCACTCTaGGGGAGCAAGGCAACTTTC +
Preference number: 5 (lower is better)
Translates to: HHLSYREVILVGSTEQVQQLKAL*GSKATF
Trigger: GAAAGTTGCCTTGCTCCCCAAGAGTGCCTTTAATTG...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAATCCTCCGTTTGGCATTaGGTTTCTGTGAAGTATTAT +
Preference number: 5 (lower is better)
Translates to: TSLKASSPITGKPETCRESSVWH*VSVKYY
Trigger: ATAATACTTCACAGAAACCAAATGCCAAACGGAGGA...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACATGATGATGAGACTTTaGCCCTTTGAAAATCCCTTT +
Preference number: 5 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNMMMRL*PFENPF
Trigger: AAAGGGATTTTCAAAGGGCAAAAGTCTCATCATCAT...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCCTAATTTTCAATTCATaGCCAGGTAGTGGCATCTGC +
Preference number: 5 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGLIFNS*PGSGIC
Trigger: GCAGATGCCACTACCTGGCAATGAATTGAAAATTAG...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp ACCCAGATGCCTAGGGGAATAGCAATTAAAGGCACTCTTGGGGAGCAAGGCAACTCTCCTGCTCACCATTaGTTAGAAGGATATAAAAAC +
Preference number: 5 (lower is better)
Translates to: TQMPRGIAIKGTLGEQGNSPAHH*LEGYKN
Trigger: GTTTTTATATCCTTCTAACAAATGGTGAGCAGGAGA...GTTGCCTTGCTCCCCAAGAGTGCCTTTAATTGCTATTCCCCTAGGCATCTGGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCCTCGTTCCTCAAAAATaGAGATGGTTTTATGGCTAC +
Preference number: 5 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGLVPQK*RWFYGY
Trigger: GTAGCCATAAAACCATCTCAATTTTTGAGGAACGAG...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAACTTCCAACATTAGCATaGACAGAAAGGGGTAAATTT +
Preference number: 5 (lower is better)
Translates to: TSLKASSPITGKPETCRELPTLA*TERGKF
Trigger: AAATTTACCCCTTTCTGTCAATGCTAATGTTGGAAG...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAATGTCATTTTACAGCTTaGGCCTTCAAGAAAAACACT +
Preference number: 5 (lower is better)
Translates to: TSLKASSPITGKPETCRECHFTA*AFKKNT
Trigger: AGTGTTTTTCTTGAAGGCCAAAGCTGTAAAATGACA...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp ACCTCTCTAAAAGCCTCATCACCCATCACAGGCAAGCCAGAAACTTGCAGGGAAGGAATCCTTGTATCCTaGTCTTATATTTGTTGCGAA +
Preference number: 5 (lower is better)
Translates to: TSLKASSPITGKPETCREGILVS*SYICCE
Trigger: TTCGCAACAAATATAAGACAAGGATACAAGGATTCC...TTCCCTGCAAGTTTCTGGCTTGCCTGTGATGGGTGATGAGGCTTTTAGAGAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS GCA 90 bp CTTCAAAGTTCGGTGAGAAGATGGCTCATATTTTACTTCCTTTGCTaGAGCACAGTTTGTTACTTGGTGGTGAAGCCTCCTTTTTCCGTA +
Preference number: 5 (lower is better)
Translates to: LQSSVRRWLIFYFLC*STVCYLVVKPPFSV
Trigger: TACGGAAAAAGGAGGCTTCACCACCAAGTAACAAACTGTGCTGCAGCAAAGGAAGTAAAATATGAGCCATCTTCTCACCGAACTTTGAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS GCA 90 bp ATGCTTCAAAGTTCGGTGAGAAGATGGCTCATATTTTACTTCCTTTaGTGCAGCACAGTTTGTTACTTGGTGGTGAAGCCTCCTTTTTCC +
Preference number: 5 (lower is better)
Translates to: MLQSSVRRWLIFYFL*CSTVCYLVVKPPFS
Trigger: GGAAAAAGGAGGCTTCACCACCAAGTAACAAACTGTGCTGCAGCAAAGGAAGTAAAATATGAGCCATCTTCTCACCGAACTTTGAAGCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCCTTCCAACATTAGCATaGACAGAAAGGGGTAAATTT +
Preference number: 5 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGLPTLA*TERGKF
Trigger: AAATTTACCCCTTTCTGTCAATGCTAATGTTGGAAG...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCCATATTTTACTTCCTTaGCTGCAGCACAGTTTGTTA +
Preference number: 5 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGHILLP*LQHSLL
Trigger: TAACAAACTGTGCTGCAGCAAAGGAAGTAAAATATG...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCTCTGTGAAGTATTATTaGAACAGGCCCAAGTCAATT +
Preference number: 5 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGSVKYY*NRPKSI
Trigger: AATTGACTTGGGCCTGTTCAAATAATACTTCACAGA...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCCTAACAAGAGAATTTTaGTGGTTTGGATGGGTGTTT +
Preference number: 5 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGLTREF*WFGWVF
Trigger: AAACACCCATCCAAACCACAAAAATTCTCTTGTTAG...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp TCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGCATGATGATGAGACTTTaGCCCTTTGAAAATCCCTTT +
Preference number: 5 (lower is better)
Translates to: SLILQRSDSSGFYRTGAGMMMRL*PFENPF
Trigger: AAAGGGATTTTCAAAGGGCAAAAGTCTCATCATCAT...GCCTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTCATATTTTACTTCCTTaGCTGCAGCACAGTTTGTTA +
Preference number: 5 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSHILLP*LQHSLL
Trigger: TAACAAACTGTGCTGCAGCAAAGGAAGTAAAATATG...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTAAGAAGCAGGTATCTTaGCTGGTTATATTGATTTGC +
Preference number: 5 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSKKQVS*LVILIC
Trigger: GCAAATCAATATAACCAGCAAAGATACCTGCTTCTT...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTTCTGTGAAGTATTATTaGAACAGGCCCAAGTCAATT +
Preference number: 5 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSSVKYY*NRPKSI
Trigger: AATTGACTTGGGCCTGTTCAAATAATACTTCACAGA...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTTGTCATTTTACAGCTTaGGCCTTCAAGAAAAACACT +
Preference number: 5 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSCHFTA*AFKKNT
Trigger: AGTGTTTTTCTTGAAGGCCAAAGCTGTAAAATGACA...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGAGAATTTTTGTGGTTaGGATGGGTGTTTAGGAATT +
Preference number: 5 (lower is better)
Translates to: HHLSYREVILVGSTEQVQENFCG*DGCLGI
Trigger: AATTCCTAAACACCCATCCAAACCACAAAAATTCTC...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTGAGAATTTTTGTGGTTaGGATGGGTGTTTAGGAATT +
Preference number: 5 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSENFCG*DGCLGI
Trigger: AATTCCTAAACACCCATCCAAACCACAAAAATTCTC...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp GCTCTGCTCCTGATACACAGAAAGGAAGTCACCAAGTGGAGCTGTAATACAAGTCTAACAAGAGAATTTTaGTGGTTTGGATGGGTGTTT +
Preference number: 5 (lower is better)
Translates to: ALLLIHRKEVTKWSCNTSLTREF*WFGWVF
Trigger: AAACACCCATCCAAACCACAAAAATTCTCTTGTTAG...ACTTGTATTACAGCTCCACTTGGTGACTTCCTTTCTGTGTATCAGGAGCAGAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGGGAATCCTTGTATCCTaGTCTTATATTTGTTGCGAA +
Preference number: 5 (lower is better)
Translates to: HHLSYREVILVGSTEQVQGILVS*SYICCE
Trigger: TTCGCAACAAATATAAGACAAGGATACAAGGATTCC...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS-3UTR CAA 90 bp CATCACTTATCCTACAGAGAAGTGATTCTAGTGGGTTCTACCGAACAGGTGCAGTCTCCTGCTCACCATTaGTTAGAAGGATATAAAAAC +
Preference number: 5 (lower is better)
Translates to: HHLSYREVILVGSTEQVQSPAHH*LEGYKN
Trigger: GTTTTTATATCCTTCTAACAAATGGTGAGCAGGAGA...CTGCACCTGTTCGGTAGAACCCACTAGAATCACTTCTCTGTAGGATAAGTGATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS TCA 90 bp TTGGTGTCATCATTTGCTTTCTCATCATTTAATTTGGCCTTTTCCTaGACACCAAGTGATCTGACATTAGTGACAAAGATTTCATTGGCA +
Preference number: 5 (lower is better)
Translates to: LVSSFAFSSFNLAFS*TPSDLTLVTKISLA
Trigger: TGCCAATGAAATCTTTGTCACTAATGTCAGATCACTTGGTGTTCAGGAAAAGGCCAAATTAAATGATGAGAAAGCAAATGATGACACCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000367012.4
ENST00000490620.5
ENST00000629302.2
ENST00000630425.2
CDS GCA 72 bp TCAGCGGGGAGGCGGCGGCCGCAGCGCTTGAGCTGCTaGTGGTCCGCTCTGGGCTCGGCGCCAGCCCGGCCG +
Preference number: 6 (lower is better)
Translates to: SAGRRRPQRLSC*WSALGSAPARP
Trigger: CGGCCGGGCTGGCGCCGAGCCCAGAGCGGACCAGCAGCAGCTCAAGCGCTGCGGCCGCCGCCTCCCCGCTGA
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS TCA 72 bp GCAGAATCTATTCATGGACAGAACCAGAGTCATCTCTaGCAGCCTCAGATCGCGGGGTCAGCGGGGAGGCGG +
Preference number: 6 (lower is better)
Translates to: AESIHGQNQSHL*QPQIAGSAGRR
Trigger: CCGCCTCCCCGCTGACCCCGCGATCTGAGGCTGTCAGAGATGACTCTGGTTCTGTCCATGAATAGATTCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS CAA 90 bp CCGTGGTCGTTTTCGGTAAGGGCAGTCTTGAGCCATAAACCACTCTaGGGCAGAGGTGCCATTGAAAGAGCAGGCAGGGAAGCACCAGTT +
Preference number: 6 (lower is better)
Translates to: PWSFSVRAVLSHKPL*GRGAIERAGREAPV
Trigger: AACTGGTGCTTCCCTGCCTGCTCTTTCAATGGCACCTCTGCCCAAGAGTGGTTTATGGCTCAAGACTGCCCTTACCGAAAACGACCACGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000367012.4
ENST00000490620.5
ENST00000629302.2
ENST00000630425.2
CDS CAA 72 bp TTTGGCCATCCGTGGTCGTTTTCGGTAAGGGCAGTCTaGAGCCATAAACCACTCTTGGGCAGAGGTGCCATT +
Preference number: 6 (lower is better)
Translates to: FGHPWSFSVRAV*SHKPLLGRGAI
Trigger: AATGGCACCTCTGCCCAAGAGTGGTTTATGGCTCAAGACTGCCCTTACCGAAAACGACCACGGATGGCCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000367012.4
ENST00000490620.5
ENST00000629302.2
ENST00000630425.2
CDS CAA 90 bp ACATTCCTCTTTGGCCATCCGTGGTCGTTTTCGGTAAGGGCAGTCTaGAGCCATAAACCACTCTTGGGCAGAGGTGCCATTGAAAGAGCA +
Preference number: 6 (lower is better)
Translates to: TFLFGHPWSFSVRAV*SHKPLLGRGAIERA
Trigger: TGCTCTTTCAATGGCACCTCTGCCCAAGAGTGGTTTATGGCTCAAGACTGCCCTTACCGAAAACGACCACGGATGGCCAAAGAGGAATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000367012.4
ENST00000490620.5
ENST00000629302.2
ENST00000630425.2
CDS CCA 72 bp GGTACCCAGCAATTTCAGCAGCTCCTTCCGAGACAATaGGCTCGCAGAATCTATTCATGGACAGAACCAGAG +
Preference number: 6 (lower is better)
Translates to: GTQQFQQLLPRQ*ARRIYSWTEPE
Trigger: CTCTGGTTCTGTCCATGAATAGATTCTGCGAGCCCATTGTCTCGGAAGGAGCTGCTGAAATTGCTGGGTACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000367012.4
ENST00000482421.1
ENST00000490620.5
ENST00000626471.1
ENST00000629302.2
ENST00000630425.2
CDS CAA 72 bp TTTTCGGTAAGGGCAGTCTTGAGCCATAAACCACTCTaGGGCAGAGGTGCCATTGAAAGAGCAGGCAGGGAA +
Preference number: 6 (lower is better)
Translates to: FSVRAVLSHKPL*GRGAIERAGRE
Trigger: TTCCCTGCCTGCTCTTTCAATGGCACCTCTGCCCAAGAGTGGTTTATGGCTCAAGACTGCCCTTACCGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000367012.4
ENST00000490620.5
ENST00000629302.2
ENST00000630425.2
CDS CCA 72 bp GGCATGAAACTTTTCACATTCCTCTTTGGCCATCCGTaGTCGTTTTCGGTAAGGGCAGTCTTGAGCCATAAA +
Preference number: 6 (lower is better)
Translates to: GMKLFTFLFGHP*SFSVRAVLSHK
Trigger: TTTATGGCTCAAGACTGCCCTTACCGAAAACGACCACGGATGGCCAAAGAGGAATGTGAAAAGTTTCATGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000367012.4
ENST00000490620.5
ENST00000629302.2
ENST00000630425.2
CDS CCA 72 bp TCTGCTCTGCTCTTTATGGCTACAGCTGCTGAGTGGTaGGTGAAAATCCTCTTCTTCCACATACTTCCTCTT +
Preference number: 6 (lower is better)
Translates to: SALLFMATAAEW*VKILFFHILPL
Trigger: AAGAGGAAGTATGTGGAAGAAGAGGATTTTCACCCACCACTCAGCAGCTGTAGCCATAAAGAGCAGAGCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000482421.1
ENST00000626471.1
CDS TCA 72 bp CTCTGCTCTTTATGGCTACAGCTGCTGAGTGGTGGGTaGAAATCCTCTTCTTCCACATACTTCCTCTTAAAG +
Preference number: 6 (lower is better)
Translates to: LCSLWLQLLSGG*KSSSSTYFLLK
Trigger: CTTTAAGAGGAAGTATGTGGAAGAAGAGGATTTTCACCCACCACTCAGCAGCTGTAGCCATAAAGAGCAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000482421.1
ENST00000626471.1
CDS TCA 72 bp GCAGAATCTATTCATGGACAGAACCAGAGTCATCTCTaGCAGCCTCAGATCGTAATTCCAACTGATGCTCTG +
Preference number: 6 (lower is better)
Translates to: AESIHGQNQSHL*QPQIVIPTDAL
Trigger: CAGAGCATCAGTTGGAATTACGATCTGAGGCTGTCAGAGATGACTCTGGTTCTGTCCATGAATAGATTCTGC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000490620.5
ENST00000629302.2
CDS GCA 72 bp ATTGGCAGGTATCTGGCCATCACTCTTGTAAATAGATaGACTACCTACATCAAAATCCACCTGGCGGGAACA +
Preference number: 6 (lower is better)
Translates to: IGRYLAITLVNR*TTYIKIHLAGT
Trigger: TGTTCCCGCCAGGTGGATTTTGATGTAGGTAGTGCATCTATTTACAAGAGTGATGGCCAGATACCTGCCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000367012.4
ENST00000490620.5
ENST00000629302.2
ENST00000630425.2
CDS TCA 72 bp GAGATGGTTTTATGGCTACAGCTGCTGAGTGGTGGGTaGAAATCCTCTTCTTCCACATACTTCCTCTTAAAG +
Preference number: 6 (lower is better)
Translates to: EMVLWLQLLSGG*KSSSSTYFLLK
Trigger: CTTTAAGAGGAAGTATGTGGAAGAAGAGGATTTTCACCCACCACTCAGCAGCTGTAGCCATAAAACCATCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000367012.4
ENST00000490620.5
ENST00000629302.2
ENST00000630425.2
CDS GCA 72 bp AGTTCGGTGAGAAGATGGCTCATATTTTACTTCCTTTaGTGCAGCACAGTTTGTTACTTGGTGGTGAAGCCT +
Preference number: 6 (lower is better)
Translates to: SSVRRWLIFYFL*CSTVCYLVVKP
Trigger: AGGCTTCACCACCAAGTAACAAACTGTGCTGCAGCAAAGGAAGTAAAATATGAGCCATCTTCTCACCGAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS CAA 72 bp AAGTTCGGTGAGAAGATGGCTCATATTTTACTTCCTTaGCTGCAGCACAGTTTGTTACTTGGTGGTGAAGCC +
Preference number: 6 (lower is better)
Translates to: KFGEKMAHILLP*LQHSLLLGGEA
Trigger: GGCTTCACCACCAAGTAACAAACTGTGCTGCAGCAAAGGAAGTAAAATATGAGCCATCTTCTCACCGAACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS CAA 90 bp CATGCTTCAAAGTTCGGTGAGAAGATGGCTCATATTTTACTTCCTTaGCTGCAGCACAGTTTGTTACTTGGTGGTGAAGCCTCCTTTTTC +
Preference number: 6 (lower is better)
Translates to: HASKFGEKMAHILLP*LQHSLLLGGEASFF
Trigger: GAAAAAGGAGGCTTCACCACCAAGTAACAAACTGTGCTGCAGCAAAGGAAGTAAAATATGAGCCATCTTCTCACCGAACTTTGAAGCATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2
CDS CAA 72 bp AAGTTGATGTCTCTTAATGGTCATGTCTTCTACAAGTaGTCCTCTGCTCTGCTCTTTATGGCTACAGCTGCT +
Preference number: 6 (lower is better)
Translates to: KLMSLNGHVFYK*SSALLFMATAA
Trigger: AGCAGCTGTAGCCATAAAGAGCAGAGCAGAGGACAACTTGTAGAAGACATGACCATTAAGAGACATCAACTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000482421.1
ENST00000626471.1
CDS CAA 72 bp ATATTTTACTTCCTTTGCTGCAGCACAGTTTGTTACTaGGTGGTGAAGCCTCCTTTTTCCGTAAGGACTTTT +
Preference number: 6 (lower is better)
Translates to: IFYFLCCSTVCY*VVKPPFSVRTF
Trigger: AAAAGTCCTTACGGAAAAAGGAGGCTTCACCACCAAGTAACAAACTGTGCTGCAGCAAAGGAAGTAAAATAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000367012.4
ENST00000630425.2