Pregenerated sensors for SELENOT (Homo sapiens)
Ensembl gene IDs: ENSG00000198843Ensembl transcript IDs: ENST00000471696.6, ENST00000485923.1, ENST00000615547.4
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TTTGAGTGCCAACATGACACTCAAAGGAAATGCTCATGGAACATTTCAGATTTCTGTCCCAAGCATTTTTaGAAAAGGGATACTCAACCT | + |
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Preference number: 2 (lower is better) Translates to: FECQHDTQRKCSWNISDFCPKHF*KRDTQP Trigger: AGGTTGAGTATCCCTTTTCCAAAAATGCTTGGGACA...GAAATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTCATGTTGGCACTCAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| 3UTR CAA 90 bp | ATGACACTCAAAGGAAATGCTCATGGAACATTTCAGATTTCAGATTaGGGATGCCCAACTGGTAAGTATAATGCAAATATTCCAAACTTT | + |
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Preference number: 2 (lower is better) Translates to: MTLKGNAHGTFQISD*GCPTGKYNANIPNF Trigger: AAAGTTTGGAATATTTGCATTATACTTACCAGTTGGGCATCCCAAATCTGAAATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTCAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| 3UTR-3UTR CAA 90 bp | AGTGCCAACATGACACTCAAAGGAAATGCTCATGGAACATTTCAGATTTCAGATTTGTCCCAAGCATTTTaGGAAAAGGGATACTCAACC | + |
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Preference number: 3 (lower is better) Translates to: SANMTLKGNAHGTFQISDLSQAF*EKGYST Trigger: GGTTGAGTATCCCTTTTCCAAAAATGCTTGGGACAA...ATCTGAAATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTCATGTTGGCACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| 3UTR-3UTR CAA 90 bp | TTTGAGTGCCAACATGACACTCAAAGGAAATGCTCATGGAACATTTCAGATTTCTTGTCCCAAGCATTTTaGGAAAAGGGATACTCAACC | + |
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Preference number: 3 (lower is better) Translates to: FECQHDTQRKCSWNISDFLSQAF*EKGYST Trigger: GGTTGAGTATCCCTTTTCCAAAAATGCTTGGGACAA...GAAATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTCATGTTGGCACTCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| 3UTR GCA 72 bp | AACCTTTTTGAGTGCCAACATGACACTCAAAGGAAATaGTCATGGAACATTTCAGATTTCAGATTTGGGATG | + |
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Preference number: 3 (lower is better) Translates to: NLFECQHDTQRK*SWNISDFRFGM Trigger: CATCCCAAATCTGAAATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTCATGTTGGCACTCAAAAAGGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| 3UTR-3UTR CAA 90 bp | TTTGAGTGCCAACATGACACTCAAAGGAAATGCTCATGGAACATTTCAGATTTCTTTCCTAAATCACTTTaGGCTCTACCACTTCTATTC | + |
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Preference number: 3 (lower is better) Translates to: FECQHDTQRKCSWNISDFFPKSL*ALPLLF Trigger: GAATAGAAGTGGTAGAGCCAAAAGTGATTTAGGAAA...GAAATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTCATGTTGGCACTCAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| 3UTR-3UTR CAA 90 bp | AGTGCCAACATGACACTCAAAGGAAATGCTCATGGAACATTTCAGATTTCAGATTTTCCTAAATCACTTTaGGCTCTACCACTTCTATTC | + |
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Preference number: 3 (lower is better) Translates to: SANMTLKGNAHGTFQISDFPKSL*ALPLLF Trigger: GAATAGAAGTGGTAGAGCCAAAAGTGATTTAGGAAA...ATCTGAAATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTCATGTTGGCACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| 3UTR GCA 72 bp | AATGCTCATGGAACATTTCAGATTTCAGATTTGGGATaGCCAACTGGTAAGTATAATGCAAATATTCCAAAC | + |
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Preference number: 3 (lower is better) Translates to: NAHGTFQISDLG*PTGKYNANIPN Trigger: GTTTGGAATATTTGCATTATACTTACCAGTTGGGCATCCCAAATCTGAAATCTGAAATGTTCCATGAGCATT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| 3UTR CCA 72 bp | AAGGAAATGCTCATGGAACATTTCAGATTTCAGATTTaGGATGCCCAACTGGTAAGTATAATGCAAATATTC | + |
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Preference number: 3 (lower is better) Translates to: KEMLMEHFRFQI*DAQLVSIMQIF Trigger: GAATATTTGCATTATACTTACCAGTTGGGCATCCCAAATCTGAAATCTGAAATGTTCCATGAGCATTTCCTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| CDS-3UTR GCA 90 bp | TTTGAGTGCCAACATGACACTCAAAGGAAATGCTCATGGAACATTTCAGATTTCCGCCCTCAGACAGACTaGAGCCAGCCCAAAGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: FECQHDTQRKCSWNISDFRPQTD*SQPKAQ Trigger: CTGGGCTTTGGGCTGGCTGCAGTCTGTCTGAGGGCG...GAAATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTCATGTTGGCACTCAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000615547.4 |
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| CDS-3UTR TCA 90 bp | AGTGCCAACATGACACTCAAAGGAAATGCTCATGGAACATTTCAGATTTCAGATAAGCCTCATCTTAAATaGGCCAGCCACTTCGGCCGC | + |
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Preference number: 4 (lower is better) Translates to: SANMTLKGNAHGTFQISDKPHLK*ASHFGR Trigger: GCGGCCGAAGTGGCTGGCTCATTTAAGATGAGGCTT...ATCTGAAATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTCATGTTGGCACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| CDS-3UTR TCA 90 bp | TTTGAGTGCCAACATGACACTCAAAGGAAATGCTCATGGAACATTTCAGATTTCAAGCCTCATCTTAAATaGGCCAGCCACTTCGGCCGC | + |
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Preference number: 4 (lower is better) Translates to: FECQHDTQRKCSWNISDFKPHLK*ASHFGR Trigger: GCGGCCGAAGTGGCTGGCTCATTTAAGATGAGGCTT...GAAATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTCATGTTGGCACTCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| CDS-3UTR TCA 90 bp | AGTGCCAACATGACACTCAAAGGAAATGCTCATGGAACATTTCAGATTTCAGATCACCCGCCTATAACCTaGACTAACCCAAATCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: SANMTLKGNAHGTFQISDHPPIT*TNPNLE Trigger: TTCCAGATTTGGGTTAGTTCAGGTTATAGGCGGGTG...ATCTGAAATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTCATGTTGGCACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000615547.4 |
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| CDS-3UTR TCA 90 bp | AGTGCCAACATGACACTCAAAGGAAATGCTCATGGAACATTTCAGATTTCAGATAAGTGGACTCAATGTTaGACCTTTTTGAGTGCCAAC | + |
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Preference number: 4 (lower is better) Translates to: SANMTLKGNAHGTFQISDKWTQC*TFLSAN Trigger: GTTGGCACTCAAAAAGGTTCAACATTGAGTCCACTT...ATCTGAAATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTCATGTTGGCACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| CDS-3UTR TCA 90 bp | TTTGAGTGCCAACATGACACTCAAAGGAAATGCTCATGGAACATTTCAGATTTCAAGTGGACTCAATGTTaGACCTTTTTGAGTGCCAAC | + |
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Preference number: 4 (lower is better) Translates to: FECQHDTQRKCSWNISDFKWTQC*TFLSAN Trigger: GTTGGCACTCAAAAAGGTTCAACATTGAGTCCACTT...GAAATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTCATGTTGGCACTCAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| CDS-3UTR GCA 90 bp | AGTGCCAACATGACACTCAAAGGAAATGCTCATGGAACATTTCAGATTTCAGATTTGAACCTTTTTGAGTaGCAACATGACACTCAAAGG | + |
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Preference number: 4 (lower is better) Translates to: SANMTLKGNAHGTFQISDLNLFE*QHDTQR Trigger: CCTTTGAGTGTCATGTTGGCACTCAAAAAGGTTCAA...ATCTGAAATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTCATGTTGGCACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| CDS-3UTR CCA 90 bp | AGTGCCAACATGACACTCAAAGGAAATGCTCATGGAACATTTCAGATTTCAGATTGTCCCAAGCATTTTTaGAAAAGGGATACTCAACCT | + |
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Preference number: 4 (lower is better) Translates to: SANMTLKGNAHGTFQISDCPKHF*KRDTQP Trigger: AGGTTGAGTATCCCTTTTCCAAAAATGCTTGGGACA...ATCTGAAATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTCATGTTGGCACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| CDS-3UTR CCA 90 bp | TTTGAGTGCCAACATGACACTCAAAGGAAATGCTCATGGAACATTTCAGATTTCTTCAGATTTCAGATTTaGGATGCCCAACTGGTAAGT | + |
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Preference number: 4 (lower is better) Translates to: FECQHDTQRKCSWNISDFFRFQI*DAQLVS Trigger: ACTTACCAGTTGGGCATCCCAAATCTGAAATCTGAA...GAAATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTCATGTTGGCACTCAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| CDS-3UTR CCA 90 bp | AGTGCCAACATGACACTCAAAGGAAATGCTCATGGAACATTTCAGATTTCAGATTTCAGATTTCAGATTTaGGATGCCCAACTGGTAAGT | + |
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Preference number: 4 (lower is better) Translates to: SANMTLKGNAHGTFQISDFRFQI*DAQLVS Trigger: ACTTACCAGTTGGGCATCCCAAATCTGAAATCTGAA...ATCTGAAATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTCATGTTGGCACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| CDS-3UTR GCA 90 bp | AGTGCCAACATGACACTCAAAGGAAATGCTCATGGAACATTTCAGATTTCAGATGACACTCAAAGGAAATaGTCATGGAACATTTCAGAT | + |
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Preference number: 4 (lower is better) Translates to: SANMTLKGNAHGTFQISDDTQRK*SWNISD Trigger: ATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTC...ATCTGAAATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTCATGTTGGCACT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| CDS-3UTR CCA 90 bp | AGTGCCAACATGACACTCAAAGGAAATGCTCATGGAACATTTCAGATTTCAGATCAAAGGAAATGCTCATaGAACATTTCAGATTTCAGA | + |
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Preference number: 4 (lower is better) Translates to: SANMTLKGNAHGTFQISDQRKCS*NISDFR Trigger: TCTGAAATCTGAAATGTTCCATGAGCATTTCCTTTG...ATCTGAAATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTCATGTTGGCACT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| CDS-3UTR CCA 90 bp | TTTGAGTGCCAACATGACACTCAAAGGAAATGCTCATGGAACATTTCAGATTTCCAAAGGAAATGCTCATaGAACATTTCAGATTTCAGA | + |
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Preference number: 4 (lower is better) Translates to: FECQHDTQRKCSWNISDFQRKCS*NISDFR Trigger: TCTGAAATCTGAAATGTTCCATGAGCATTTCCTTTG...GAAATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTCATGTTGGCACTCAAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| 3UTR CAA 72 bp | AAAGGAAATGCTCATGGAACATTTCAGATTTCAGATTaGGGATGCCCAACTGGTAAGTATAATGCAAATATT | + |
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Preference number: 4 (lower is better) Translates to: KGNAHGTFQISD*GCPTGKYNANI Trigger: AATATTTGCATTATACTTACCAGTTGGGCATCCCAAATCTGAAATCTGAAATGTTCCATGAGCATTTCCTTT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| CDS CCA 90 bp | GGAGGGCGGCCTGACCGCGCTAAGGGGCCGCGAGAAGGCTGGCTGTaGAAGGGCGCCGGCACAGTTCTACGAGGCCAGCGAAGATGCGGC | + |
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Preference number: 5 (lower is better) Translates to: GGRPDRAKGPREGWL*KGAGTVLRGQRRCG Trigger: GCCGCATCTTCGCTGGCCTCGTAGAACTGTGCCGGCGCCCTTCCACAGCCAGCCTTCTCGCGGCCCCTTAGCGCGGTCAGGCCGCCCTCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000485923.1 |
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| CDS CCA 90 bp | GGAAAAGGAGGGCGGCCTGACCGCGCTAAGGGGCCGCGAGAAGGCTaGCTGTGGAAGGGCGCCGGCACAGTTCTACGAGGCCAGCGAAGA | + |
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Preference number: 5 (lower is better) Translates to: GKGGRPDRAKGPREG*LWKGAGTVLRGQRR Trigger: TCTTCGCTGGCCTCGTAGAACTGTGCCGGCGCCCTTCCACAGCCAGCCTTCTCGCGGCCCCTTAGCGCGGTCAGGCCGCCCTCCTTTTCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000485923.1 |
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| CDS GCA 90 bp | TGGCTGTGGAAGGGCGCCGGCACAGTTCTACGAGGCCAGCGAAGATaGGGCCATTTAGGCCGCGAAGCCGGGGCCTCGCGTAGCCAATGG | + |
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Preference number: 5 (lower is better) Translates to: WLWKGAGTVLRGQRR*GHLGREAGASRSQW Trigger: CCATTGGCTACGCGAGGCCCCGGCTTCGCGGCCTAAATGGCCGCATCTTCGCTGGCCTCGTAGAACTGTGCCGGCGCCCTTCCACAGCCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000485923.1 |
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| CDS-3UTR CAA 90 bp | AGTGCCAACATGACACTCAAAGGAAATGCTCATGGAACATTTCAGATTTCAGATTTTCAGATTTCAGATTaGGGATGCCCAACTGGTAAG | + |
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Preference number: 5 (lower is better) Translates to: SANMTLKGNAHGTFQISDFQISD*GCPTGK Trigger: CTTACCAGTTGGGCATCCCAAATCTGAAATCTGAAA...ATCTGAAATCTGAAATGTTCCATGAGCATTTCCTTTGAGTGTCATGTTGGCACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000471696.6 ENST00000615547.4 |
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| CDS CCA 72 bp | GGGCGGCCTGACCGCGCTAAGGGGCCGCGAGAAGGCTaGCTGTGGAAGGGCGCCGGCACAGTTCTACGAGGC | + |
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Preference number: 6 (lower is better) Translates to: GRPDRAKGPREG*LWKGAGTVLRG Trigger: GCCTCGTAGAACTGTGCCGGCGCCCTTCCACAGCCAGCCTTCTCGCGGCCCCTTAGCGCGGTCAGGCCGCCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000485923.1 |
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| CDS CCA 72 bp | CCTGACCGCGCTAAGGGGCCGCGAGAAGGCTGGCTGTaGAAGGGCGCCGGCACAGTTCTACGAGGCCAGCGA | + |
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Preference number: 6 (lower is better) Translates to: PDRAKGPREGWL*KGAGTVLRGQR Trigger: TCGCTGGCCTCGTAGAACTGTGCCGGCGCCCTTCCACAGCCAGCCTTCTCGCGGCCCCTTAGCGCGGTCAGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000485923.1 |
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| CDS GCA 72 bp | AAGGGCGCCGGCACAGTTCTACGAGGCCAGCGAAGATaGGGCCATTTAGGCCGCGAAGCCGGGGCCTCGCGT | + |
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Preference number: 6 (lower is better) Translates to: KGAGTVLRGQRR*GHLGREAGASR Trigger: ACGCGAGGCCCCGGCTTCGCGGCCTAAATGGCCGCATCTTCGCTGGCCTCGTAGAACTGTGCCGGCGCCCTT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000485923.1 |
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