Pregenerated sensors for SELENOK (Homo sapiens)
Ensembl gene IDs: ENSG00000113811Ensembl transcript IDs: ENST00000485414.1, ENST00000488746.1, ENST00000495461.6, ENST00000541726.5
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CGCCTGGCTAATTTTTGTTATTTTAGGTTTCGTCATGCTGCAGGCTaGTCTCAAACTCGTGAACTTAGGCGATCTGCCCGCCTCAGCCTC | + |
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Preference number: 1 (lower is better) Translates to: RLANFCYFRFRHAAG*SQTRELRRSARLSL Trigger: GAGGCTGAGGCGGGCAGATCGCCTAAGTTCACGAGTTTGAGACCAGCCTGCAGCATGACGAAACCTAAAATAACAAAAATTAGCCAGGCG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000495461.6 |
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| 3UTR-3UTR GCA 90 bp | CTAGGCAGGAGTGCAGTGGCATGCTCACAGCAACCTCCGCCTCCCGGGTTGAAGTACACATTCATCTACTaGTCATCATGGTCAGCCTTC | + |
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Preference number: 2 (lower is better) Translates to: LGRSAVACSQQPPPPGLKYTFIY*SSWSAF Trigger: GAAGGCTGACCATGATGAGCAGTAGATGAATGTGTA...CTTCAACCCGGGAGGCGGAGGTTGCTGTGAGCATGCCACTGCACTCCTGCCTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000495461.6 |
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| 3UTR-3UTR GCA 90 bp | AAGGACTGGGGTAAAGACAACAAAATTCCTAGTCTCAGAGCTTCCACTCTAGTGAGCAGGGATTACAGGTaGACTCTACCACGCCTGGCT | + |
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Preference number: 2 (lower is better) Translates to: KDWGKDNKIPSLRASTLVSRDYR*TLPRLA Trigger: AGCCAGGCGTGGTAGAGTGCACCTGTAATCCCTGCT...CACTAGAGTGGAAGCTCTGAGACTAGGAATTTTGTTGTCTTTACCCCAGTCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000495461.6 |
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| 3UTR-3UTR GCA 90 bp | TACTACATGACTATCTTACATGTAGTCACTATTCAAAGGACTGGGGTAAAGACATTGAAGCGATTCTCCTaGCTCCGCCTCCTGAGTAGC | + |
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Preference number: 2 (lower is better) Translates to: YYMTILHVVTIQRTGVKTLKRFS*LRLLSS Trigger: GCTACTCAGGAGGCGGAGGCAGGAGAATCGCTTCAA...TGTCTTTACCCCAGTCCTTTGAATAGTGACTACATGTAAGATAGTCATGTAGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000495461.6 |
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| 3UTR-3UTR TCA 90 bp | TACTACATGACTATCTTACATGTAGTCACTATTCAAAGGACTGGGGTAAAGACAAGGCAGTATTTTGAGTaGTGCTATAGAGTGCAAATT | + |
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Preference number: 2 (lower is better) Translates to: YYMTILHVVTIQRTGVKTRQYFE*CYRVQI Trigger: AATTTGCACTCTATAGCATCACTCAAAATACTGCCT...TGTCTTTACCCCAGTCCTTTGAATAGTGACTACATGTAAGATAGTCATGTAGTA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000495461.6 |
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| 3UTR CAA 90 bp | AAGTTATCAGTATTCAGATGGAGTTTAAAGCCAATAGGCAGTATTTaGAGTGATGCTATAGAGTGCAAATTTGTCAAGATAGCATGGAAG | + |
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Preference number: 2 (lower is better) Translates to: KLSVFRWSLKPIGSI*SDAIECKFVKIAWK Trigger: CTTCCATGCTATCTTGACAAATTTGCACTCTATAGCATCACTCAAAATACTGCCTATTGGCTTTAAACTCCATCTGAATACTGATAACTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000495461.6 |
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| 3UTR-3UTR CAA 90 bp | GTGAAAGTTATCAGTATTCAGATGGAGTTTAAAGCCAATAGGCAGTATTTTGAGCCTCCGCCTCCCGGGTaGAAGCGATTCTCCTGCCTC | + |
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Preference number: 3 (lower is better) Translates to: VKVISIQMEFKANRQYFEPPPPG*KRFSCL Trigger: GAGGCAGGAGAATCGCTTCAACCCGGGAGGCGGAGG...CTCAAAATACTGCCTATTGGCTTTAAACTCCATCTGAATACTGATAACTTTCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000495461.6 |
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| 3UTR CCA 72 bp | AATTTTTGTTATTTTAGGTTTCGTCATGCTGCAGGCTaGTCTCAAACTCGTGAACTTAGGCGATCTGCCCGC | + |
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Preference number: 3 (lower is better) Translates to: NFCYFRFRHAAG*SQTRELRRSAR Trigger: GCGGGCAGATCGCCTAAGTTCACGAGTTTGAGACCAGCCTGCAGCATGACGAAACCTAAAATAACAAAAATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000495461.6 |
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| 3UTR-3UTR CAA 90 bp | TACTACATGACTATCTTACATGTAGTCACTATTCAAAGGACTGGGGTAAAGACACCAATAGGCAGTATTTaGAGTGATGCTATAGAGTGC | + |
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Preference number: 3 (lower is better) Translates to: YYMTILHVVTIQRTGVKTPIGSI*SDAIEC Trigger: GCACTCTATAGCATCACTCAAAATACTGCCTATTGG...TGTCTTTACCCCAGTCCTTTGAATAGTGACTACATGTAAGATAGTCATGTAGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000495461.6 |
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| CDS-3UTR CCA 90 bp | CTAGGCAGGAGTGCAGTGGCATGCTCACAGCAACCTCCGCCTCCCGGGTTGAAGGAGCCACCGGGCGCCTaGCCCCTGTCGGTTTCTGTA | + |
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Preference number: 4 (lower is better) Translates to: LGRSAVACSQQPPPPGLKEPPGA*PLSVSV Trigger: TACAGAAACCGACAGGGGCCAGGCGCCCGGTGGCTC...CTTCAACCCGGGAGGCGGAGGTTGCTGTGAGCATGCCACTGCACTCCTGCCTAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000495461.6 |
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| CDS-3UTR GCA 90 bp | CTAGGCAGGAGTGCAGTGGCATGCTCACAGCAACCTCCGCCTCCCGGGTTGAAGAGCAGGGATTACAGGTaGACTCTACCACGCCTGGCT | + |
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Preference number: 4 (lower is better) Translates to: LGRSAVACSQQPPPPGLKSRDYR*TLPRLA Trigger: AGCCAGGCGTGGTAGAGTGCACCTGTAATCCCTGCT...CTTCAACCCGGGAGGCGGAGGTTGCTGTGAGCATGCCACTGCACTCCTGCCTAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000495461.6 |
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| CDS-3UTR GCA 90 bp | CTAGGCAGGAGTGCAGTGGCATGCTCACAGCAACCTCCGCCTCCCGGGTTGAAGTTGAAGCGATTCTCCTaGCTCCGCCTCCTGAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: LGRSAVACSQQPPPPGLKLKRFS*LRLLSS Trigger: GCTACTCAGGAGGCGGAGGCAGGAGAATCGCTTCAA...CTTCAACCCGGGAGGCGGAGGTTGCTGTGAGCATGCCACTGCACTCCTGCCTAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000495461.6 |
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| CDS-3UTR TCA 90 bp | CTAGGCAGGAGTGCAGTGGCATGCTCACAGCAACCTCCGCCTCCCGGGTTGAAGAGGCAGTATTTTGAGTaGTGCTATAGAGTGCAAATT | + |
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Preference number: 4 (lower is better) Translates to: LGRSAVACSQQPPPPGLKRQYFE*CYRVQI Trigger: AATTTGCACTCTATAGCATCACTCAAAATACTGCCT...CTTCAACCCGGGAGGCGGAGGTTGCTGTGAGCATGCCACTGCACTCCTGCCTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000495461.6 |
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| CDS-3UTR CCA 90 bp | CTAGGCAGGAGTGCAGTGGCATGCTCACAGCAACCTCCGCCTCCCGGGTTGAAGTTTGTCAAGATAGCATaGAAGCCCATGGTTTTATTT | + |
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Preference number: 4 (lower is better) Translates to: LGRSAVACSQQPPPPGLKFVKIA*KPMVLF Trigger: AAATAAAACCATGGGCTTCCATGCTATCTTGACAAA...CTTCAACCCGGGAGGCGGAGGTTGCTGTGAGCATGCCACTGCACTCCTGCCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000495461.6 |
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| CDS-3UTR TCA 90 bp | GTGAAAGTTATCAGTATTCAGATGGAGTTTAAAGCCAATAGGCAGTATTTTGAGCTCCGCCTCCCGGGTTaGAGCGATTCTCCTGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: VKVISIQMEFKANRQYFELRLPG*SDSPAS Trigger: GGAGGCAGGAGAATCGCTTCAACCCGGGAGGCGGAG...CTCAAAATACTGCCTATTGGCTTTAAACTCCATCTGAATACTGATAACTTTCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000495461.6 |
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| CDS-3UTR TCA 90 bp | GTGAAAGTTATCAGTATTCAGATGGAGTTTAAAGCCAATAGGCAGTATTTTGAGCTAGGGCCACGCAGATaGTTGATTCTACCCATTCTT | + |
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Preference number: 4 (lower is better) Translates to: VKVISIQMEFKANRQYFELGPRR*LILPIL Trigger: AAGAATGGGTAGAATCAATCATCTGCGTGGCCCTAG...CTCAAAATACTGCCTATTGGCTTTAAACTCCATCTGAATACTGATAACTTTCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000495461.6 |
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| CDS-3UTR GCA 90 bp | AAAATTCCTAGTCTCAGAGCTTCCACTCTAGTGAAAGAATGTGAAAGTTATCAGTACACATTCATCTACTaGTCATCATGGTCAGCCTTC | + |
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Preference number: 4 (lower is better) Translates to: KIPSLRASTLVKECESYQYTFIY*SSWSAF Trigger: GAAGGCTGACCATGATGAGCAGTAGATGAATGTGTA...CTGATAACTTTCACATTCTTTCACTAGAGTGGAAGCTCTGAGACTAGGAATTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000495461.6 |
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| CDS-3UTR CCA 90 bp | TACTACATGACTATCTTACATGTAGTCACTATTCAAAGGACTGGGGTAAAGACATTATCAGTATTCAGATaGAGTTTAAAGCCAATAGGC | + |
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Preference number: 4 (lower is better) Translates to: YYMTILHVVTIQRTGVKTLSVFR*SLKPIG Trigger: GCCTATTGGCTTTAAACTCCATCTGAATACTGATAA...TGTCTTTACCCCAGTCCTTTGAATAGTGACTACATGTAAGATAGTCATGTAGTA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000495461.6 |
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| CDS-3UTR CCA 90 bp | GTGAAAGTTATCAGTATTCAGATGGAGTTTAAAGCCAATAGGCAGTATTTTGAGCACTATTCAAAGGACTaGGGTAAAGACAACAAAATT | + |
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Preference number: 4 (lower is better) Translates to: VKVISIQMEFKANRQYFEHYSKD*GKDNKI Trigger: AATTTTGTTGTCTTTACCCCAGTCCTTTGAATAGTG...CTCAAAATACTGCCTATTGGCTTTAAACTCCATCTGAATACTGATAACTTTCAC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000495461.6 |
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| CDS-3UTR CAA 90 bp | TTTAGGTTTCGTCATGCTGCAGGCTGGTCTCAAACTCGTGAACTTAGGCGATCTCCTCCGCCTCCCGGGTaGAAGCGATTCTCCTGCCTC | + |
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Preference number: 5 (lower is better) Translates to: FRFRHAAGWSQTRELRRSPPPPG*KRFSCL Trigger: GAGGCAGGAGAATCGCTTCAACCCGGGAGGCGGAGG...AGATCGCCTAAGTTCACGAGTTTGAGACCAGCCTGCAGCATGACGAAACCTAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000495461.6 |
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| CDS-3UTR CAA 90 bp | TTTAGGTTTCGTCATGCTGCAGGCTGGTCTCAAACTCGTGAACTTAGGCGATCTCCAATAGGCAGTATTTaGAGTGATGCTATAGAGTGC | + |
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Preference number: 5 (lower is better) Translates to: FRFRHAAGWSQTRELRRSPIGSI*SDAIEC Trigger: GCACTCTATAGCATCACTCAAAATACTGCCTATTGG...AGATCGCCTAAGTTCACGAGTTTGAGACCAGCCTGCAGCATGACGAAACCTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000495461.6 |
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| CDS GCA 72 bp | GGGCGCCTGGCCCCTGTCGGTTTCTGTATCTCCCTCTaGTCCCCGCCCTTCGAGCGTCACAGGCCGCGATTA | + |
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Preference number: 6 (lower is better) Translates to: GRLAPVGFCISL*SPPFERHRPRL Trigger: TAATCGCGGCCTGTGACGCTCGAAGGGCGGGGAGCAGAGGGAGATACAGAAACCGACAGGGGCCAGGCGCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000541726.5 |
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| CDS CCA 72 bp | TTGTCCCACTTCCCCGCTTCGGAGCCACCGGGCGCCTaGCCCCTGTCGGTTTCTGTATCTCCCTCTGCTCCC | + |
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Preference number: 6 (lower is better) Translates to: LSHFPASEPPGA*PLSVSVSPSAP Trigger: GGGAGCAGAGGGAGATACAGAAACCGACAGGGGCCAGGCGCCCGGTGGCTCCGAAGCGGGGAAGTGGGACAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000485414.1 ENST00000488746.1 ENST00000541726.5 |
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| CDS TCA 72 bp | AGTCAAACAGGTGGGCAGGCAGCTCTAGCACTGATCTaGCACAGTCATGTCCTTCCTTTCCGGTCATCTTCT | + |
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Preference number: 6 (lower is better) Translates to: SQTGGQAALALI*HSHVLPFRSSS Trigger: AGAAGATGACCGGAAAGGAAGGACATGACTGTGTCAGATCAGTGCTAGAGCTGCCTGCCCACCTGTTTGACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000485414.1 |
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