Pregenerated sensors for SEC61B (Homo sapiens)
Ensembl gene IDs: ENSG00000106803Ensembl transcript IDs: ENST00000481573.1, ENST00000498603.5
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCTCCACCCCAGAATCAGCGAGGTTCTGGGTCCTATCTCCGAGTCTaGAAGCGAACGAACTGCAGGGTTCCTTACCTCTGCCGGACAGTG | + |
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Preference number: 5 (lower is better) Translates to: SPPQNQRGSGSYLRV*KRTNCRVPYLCRTV Trigger: CACTGTCCGGCAGAGGTAAGGAACCCTGCAGTTCGTTCGCTTCCAGACTCGGAGATAGGACCCAGAACCTCGCTGATTCTGGGGTGGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000481573.1 |
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| CDS GCA 90 bp | AAGGCCTTTAACTACTCCCACGGCCACGTCACTAGAAGCTCATTTTaGCTTTGTCAATCTTCACATGCTAGGGTCTCCACCCCAGAATCA | + |
|
Preference number: 5 (lower is better) Translates to: KAFNYSHGHVTRSSF*LCQSSHARVSTPES Trigger: TGATTCTGGGGTGGAGACCCTAGCATGTGAAGATTGACAAAGGCAAAATGAGCTTCTAGTGACGTGGCCGTGGGAGTAGTTAAAGGCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000481573.1 |
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| CDS GCA 72 bp | TCTGGGTCCTATCTCCGAGTCTGGAAGCGAACGAACTaGAGGGTTCCTTACCTCTGCCGGACAGTGGATCCC | + |
|
Preference number: 6 (lower is better) Translates to: SGSYLRVWKRTN*RVPYLCRTVDP Trigger: GGGATCCACTGTCCGGCAGAGGTAAGGAACCCTGCAGTTCGTTCGCTTCCAGACTCGGAGATAGGACCCAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000481573.1 |
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| CDS CAA 72 bp | GCTGTATGGGAAGTAGAGACCTCCGGCCTCCTTCCTTaGGATCACAACGTCCTTCAGAAAGTCCAATCCCTA | + |
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Preference number: 6 (lower is better) Translates to: AVWEVETSGLLP*DHNVLQKVQSL Trigger: TAGGGATTGGACTTTCTGAAGGACGTTGTGATCCAAAGGAAGGAGGCCGGAGGTCTCTACTTCCCATACAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000498603.5 |
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| CDS GCA 72 bp | CAGATTGCTTATGGGGCCGCCAGATGGAAATGTGAGTaGAAACCTCAGGTCCAGAGACACCAGTTTAATGAC | + |
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Preference number: 6 (lower is better) Translates to: QIAYGAARWKCE*KPQVQRHQFND Trigger: GTCATTAAACTGGTGTCTCTGGACCTGAGGTTTGCACTCACATTTCCATCTGGCGGCCCCATAAGCAATCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000481573.1 |
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