RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SDC2 (Homo sapiens)

Ensembl gene IDs: ENSG00000169439

Ensembl transcript IDs: ENST00000302190.9, ENST00000518385.5, ENST00000519587.1, ENST00000519914.5, ENST00000520233.1, ENST00000521590.5, ENST00000522911.5, ENST00000523877.1

Found 225 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTTCCCCAGGCATCACTCTTTCCAGCCACTTCAATCCTAAAGCAGTaGGACCCTCATTTTAACACACAGAGCCTCCCTGCCTACCCTCCT +
Preference number: 1 (lower is better)
Translates to: LPQASLFPATSILKQ*DPHFNTQSLPAYPP
Trigger: AGGAGGGTAGGCAGGGAGGCTCTGTGTGTTAAAATGAGGGTCTCACTGCTTTAGGATTGAAGTGGCTGGAAAGAGTGATGCCTGGGGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR TCA 90 bp AGTGAATCTGGTAATAAACAGTCTCATCGACAGGCTCTTTGGTCTTaGTTTACAGACACTGTGAAACACTTAGAAATCAAACCCACGTCA +
Preference number: 1 (lower is better)
Translates to: SESGNKQSHRQALWS*FTDTVKHLEIKPTS
Trigger: TGACGTGGGTTTGATTTCTAAGTGTTTCACAGTGTCTGTAAATCAAGACCAAAGAGCCTGTCGATGAGACTGTTTATTACCAGATTCACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR TCA 90 bp TCTTTTCCTGGCACGGATATTCCCAGCAGTTGTTATTCTATGAATTaGATTTCACTCTGCTTTGCACAGTTAGAGGTATACCCATTCCTA +
Preference number: 1 (lower is better)
Translates to: SFPGTDIPSSCYSMN*ISLCFAQLEVYPFL
Trigger: TAGGAATGGGTATACCTCTAACTGTGCAAAGCAGAGTGAAATTCAATTCATAGAATAACAACTGCTGGGAATATCCGTGCCAGGAAAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR-3UTR TCA 90 bp ATATCTCTACCTAGACACACACAGGATAATACATTCAGATTTCCTCTGGCCAATAACCCACGTCATCCTTaGGAGCAGACGGCCGTTAGC +
Preference number: 2 (lower is better)
Translates to: ISLPRHTQDNTFRFPLANNPRHP*EQTAVS
Trigger: GCTAACGGCCGTCTGCTCTCAAGGATGACGTGGGTT...ATTGGCCAGAGGAAATCTGAATGTATTATCCTGTGTGTGTCTAGGTAGAGATAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR-3UTR TCA 90 bp TGCTTTGCACAGTTAGAGGTATACCCATTCCTACCCTCTGTAATTGAGGGACACTTTGCTGTCTTCTTCTaGCTTGGACGGCTCACAGTT +
Preference number: 2 (lower is better)
Translates to: CFAQLEVYPFLPSVIEGHFAVFF*LGRLTV
Trigger: AACTGTGAGCCGTCCAAGTCAGAAGAAGACAGCAAA...GTGTCCCTCAATTACAGAGGGTAGGAATGGGTATACCTCTAACTGTGCAAAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR-3UTR TCA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGATTGGTAAGGTCAATCTaGGACATGCTGACACAAATG +
Preference number: 2 (lower is better)
Translates to: TATKGIGFGFKGTRREGRLVRSI*DMLTQM
Trigger: CATTTGTGTCAGCATGTCTCAGATTGACCTTACCAA...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
3UTR-3UTR TCA 90 bp TGCTTTGCACAGTTAGAGGTATACCCATTCCTACCCTCTGTAATTGAGGGACACTTGGTAAGGTCAATCTaGGACATGCTGACACAAATG +
Preference number: 2 (lower is better)
Translates to: CFAQLEVYPFLPSVIEGHLVRSI*DMLTQM
Trigger: CATTTGTGTCAGCATGTCTCAGATTGACCTTACCAA...GTGTCCCTCAATTACAGAGGGTAGGAATGGGTATACCTCTAACTGTGCAAAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR-3UTR TCA 90 bp TGCTTTGCACAGTTAGAGGTATACCCATTCCTACCCTCTGTAATTGAGGGACACCAGGCTCTTTGGTCTTaGTTTACAGACACTGTGAAA +
Preference number: 2 (lower is better)
Translates to: CFAQLEVYPFLPSVIEGHQALWS*FTDTVK
Trigger: TTTCACAGTGTCTGTAAATCAAGACCAAAGAGCCTG...GTGTCCCTCAATTACAGAGGGTAGGAATGGGTATACCTCTAACTGTGCAAAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR-3UTR GCA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGAATAATATTTTGCCACTaGTATTCACAGAACACTGCA +
Preference number: 2 (lower is better)
Translates to: TATKGIGFGFKGTRREGRIIFCH*YSQNTA
Trigger: TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTAT...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
3UTR-3UTR GCA 90 bp ACTTCGAAATCCCCTGGCAGCCTTCCAATATCTCTACCTAGACACACACAGGATTCATTAACACCAGTCTaGAACAAGTTACATAGAATC +
Preference number: 2 (lower is better)
Translates to: TSKSPGSLPISLPRHTQDSLTPV*NKLHRI
Trigger: GATTCTATGTAACTTGTTGCAGACTGGTGTTAATGA...ATCCTGTGTGTGTCTAGGTAGAGATATTGGAAGGCTGCCAGGGGATTTCGAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR CAA 90 bp TTCTTTTCCTGGCACGGATATTCCCAGCAGTTGTTATTCTATGAATaGAATTTCACTCTGCTTTGCACAGTTAGAGGTATACCCATTCCT +
Preference number: 2 (lower is better)
Translates to: FFSWHGYSQQLLFYE*NFTLLCTVRGIPIP
Trigger: AGGAATGGGTATACCTCTAACTGTGCAAAGCAGAGTGAAATTCAATTCATAGAATAACAACTGCTGGGAATATCCGTGCCAGGAAAAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR-3UTR GCA 90 bp CAGTCTTGTAAGTTATTTGCAAAAGCAGGCGTCTGTCTTAATATTGCCATCAGTTTGCTGTTGCAAATCTaGCCAAAGCTACAGGTAATG +
Preference number: 2 (lower is better)
Translates to: QSCKLFAKAGVCLNIAISLLLQI*PKLQVM
Trigger: CATTACCTGTAGCTTTGGGCAGATTTGCAACAGCAA...ACTGATGGCAATATTAAGACAGACGCCTGCTTTTGCAAATAACTTACAAGACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR CAA 90 bp GAAAGCCCCATTCAGATCTTTGGAATTTACAGTCTTGTAAGTTATTaGCAAAAGCAGGCGTCTGTCTTAATATTGCCATCAGTTATCCTA +
Preference number: 2 (lower is better)
Translates to: ESPIQIFGIYSLVSY*QKQASVLILPSVIL
Trigger: TAGGATAACTGATGGCAATATTAAGACAGACGCCTGCTTTTGCAAATAACTTACAAGACTGTAAATTCCAAAGATCTGAATGGGGCTTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR CAA 90 bp ACTGTAGTCCATTTATTAGTTCTTCGGTTAAGCTTCAGTAGACATTaGGAGCACAATTCCAAAGGTAAATCAATCTATAGGCCTAAGCCT +
Preference number: 2 (lower is better)
Translates to: TVVHLLVLRLSFSRH*EHNSKGKSIYRPKP
Trigger: AGGCTTAGGCCTATAGATTGATTTACCTTTGGAATTGTGCTCCAAATGTCTACTGAAGCTTAACCGAAGAACTAATAAATGGACTACAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR-3UTR GCA 90 bp CTTGTAAGTTATTTGCAAAAGCAGGCGTCTGTCTTAATATTGCCATCAGTTATCGTGGCCAAAGGAATCTaGAGCAACTTCTTAAAATAC +
Preference number: 2 (lower is better)
Translates to: LVSYLQKQASVLILPSVIVAKGI*SNFLKY
Trigger: GTATTTTAAGAAGTTGCTGCAGATTCCTTTGGCCAC...GATAACTGATGGCAATATTAAGACAGACGCCTGCTTTTGCAAATAACTTACAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR CAA 90 bp ATTTGCCAGAAATTTTTCTTTTCCTGGCACGGATATTCCCAGCAGTaGTTATTCTATGAATTGAATTTCACTCTGCTTTGCACAGTTAGA +
Preference number: 2 (lower is better)
Translates to: ICQKFFFSWHGYSQQ*LFYELNFTLLCTVR
Trigger: TCTAACTGTGCAAAGCAGAGTGAAATTCAATTCATAGAATAACAACTGCTGGGAATATCCGTGCCAGGAAAAGAAAAATTTCTGGCAAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR-3UTR TCA 90 bp TTTTTCTTTTCCTGGCACGGATATTCCCAGCAGTTGTTATTCTATGAATTGAATTCAATCCTAAAGCAGTaGGACCCTCATTTTAACACA +
Preference number: 2 (lower is better)
Translates to: FFFSWHGYSQQLLFYELNSILKQ*DPHFNT
Trigger: TGTGTTAAAATGAGGGTCTCACTGCTTTAGGATTGA...ATTCAATTCATAGAATAACAACTGCTGGGAATATCCGTGCCAGGAAAAGAAAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR-3UTR GCA 90 bp TTTTTCTTTTCCTGGCACGGATATTCCCAGCAGTTGTTATTCTATGAATTGAATTTTCCAAAGACAAATTaGACCATGACAGCTACAAAA +
Preference number: 2 (lower is better)
Translates to: FFFSWHGYSQQLLFYELNFPKTN*TMTATK
Trigger: TTTTGTAGCTGTCATGGTGCAATTTGTCTTTGGAAA...ATTCAATTCATAGAATAACAACTGCTGGGAATATCCGTGCCAGGAAAAGAAAAA
34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR TCA 72 bp GCATCACTCTTTCCAGCCACTTCAATCCTAAAGCAGTaGGACCCTCATTTTAACACACAGAGCCTCCCTGCC +
Preference number: 3 (lower is better)
Translates to: ASLFPATSILKQ*DPHFNTQSLPA
Trigger: GGCAGGGAGGCTCTGTGTGTTAAAATGAGGGTCTCACTGCTTTAGGATTGAAGTGGCTGGAAAGAGTGATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR-3UTR CAA 90 bp ACTTCGAAATCCCCTGGCAGCCTTCCAATATCTCTACCTAGACACACACAGGATTCATCGACAGGCTCTTaGGTCTTGATTTACAGACAC +
Preference number: 3 (lower is better)
Translates to: TSKSPGSLPISLPRHTQDSSTGS*VLIYRH
Trigger: GTGTCTGTAAATCAAGACCAAAGAGCCTGTCGATGA...ATCCTGTGTGTGTCTAGGTAGAGATATTGGAAGGCTGCCAGGGGATTTCGAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR-3UTR CAA 90 bp TGCTTTGCACAGTTAGAGGTATACCCATTCCTACCCTCTGTAATTGAGGGACACACAGGCTCTTTGGTCTaGATTTACAGACACTGTGAA +
Preference number: 3 (lower is better)
Translates to: CFAQLEVYPFLPSVIEGHTGSLV*IYRHCE
Trigger: TTCACAGTGTCTGTAAATCAAGACCAAAGAGCCTGT...GTGTCCCTCAATTACAGAGGGTAGGAATGGGTATACCTCTAACTGTGCAAAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR-3UTR CAA 90 bp CAAACTTCGAAATCCCCTGGCAGCCTTCCAATATCTCTACCTAGACACACACAGTTTTCCAAAGACAAATaGCACCATGACAGCTACAAA +
Preference number: 3 (lower is better)
Translates to: QTSKSPGSLPISLPRHTQFSKDK*HHDSYK
Trigger: TTTGTAGCTGTCATGGTGCAATTTGTCTTTGGAAAA...CTGTGTGTGTCTAGGTAGAGATATTGGAAGGCTGCCAGGGGATTTCGAAGTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR TCA 72 bp GGCACGGATATTCCCAGCAGTTGTTATTCTATGAATTaGATTTCACTCTGCTTTGCACAGTTAGAGGTATAC +
Preference number: 3 (lower is better)
Translates to: GTDIPSSCYSMN*ISLCFAQLEVY
Trigger: GTATACCTCTAACTGTGCAAAGCAGAGTGAAATTCAATTCATAGAATAACAACTGCTGGGAATATCCGTGCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR-3UTR CAA 90 bp TTTTTCTTTTCCTGGCACGGATATTCCCAGCAGTTGTTATTCTATGAATTGAATAGTCTTGTAAGTTATTaGCAAAAGCAGGCGTCTGTC +
Preference number: 3 (lower is better)
Translates to: FFFSWHGYSQQLLFYELNSLVSY*QKQASV
Trigger: GACAGACGCCTGCTTTTGCAAATAACTTACAAGACT...ATTCAATTCATAGAATAACAACTGCTGGGAATATCCGTGCCAGGAAAAGAAAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR TCA 72 bp GGTAATAAACAGTCTCATCGACAGGCTCTTTGGTCTTaGTTTACAGACACTGTGAAACACTTAGAAATCAAA +
Preference number: 3 (lower is better)
Translates to: GNKQSHRQALWS*FTDTVKHLEIK
Trigger: TTTGATTTCTAAGTGTTTCACAGTGTCTGTAAATCAAGACCAAAGAGCCTGTCGATGAGACTGTTTATTACC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR GCA 72 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTaGCACTGCTATTCACAGAACACTGCAGATGTTAAA +
Preference number: 3 (lower is better)
Translates to: SMNIEGFHNIIF*HCYSQNTADVK
Trigger: TTTAACATCTGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR TCA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGACCACCAAGCCCAAGGTaGGCAGGATCCACGCGCGCC +
Preference number: 4 (lower is better)
Translates to: TATKGIGFGFKGTRREGRPPSPR*AGSTRA
Trigger: GGCGCGCGTGGATCCTGCTCACCTTGGGCTTGGTGG...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000518385.5
CDS-3UTR GCA 90 bp CACTGTGAAACACTTAGAAATCAAACCCACGTCATCCTTGAGAGCAGACGGCCGCAAAACGAAGCCTCCTaGCCAGCGCTCGGCGCAGCC +
Preference number: 4 (lower is better)
Translates to: HCETLRNQTHVILESRRPQNEAS*PALGAA
Trigger: GGCTGCGCCGAGCGCTGGGCAGGAGGCTTCGTTTTG...CGGCCGTCTGCTCTCAAGGATGACGTGGGTTTGATTTCTAAGTGTTTCACAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR GCA 90 bp ACTTCGAAATCCCCTGGCAGCCTTCCAATATCTCTACCTAGACACACACAGGATTCCCCAGGGACCGGCTaGTCCCAGCCGCTGCTTGCA +
Preference number: 4 (lower is better)
Translates to: TSKSPGSLPISLPRHTQDSPGTG*SQPLLA
Trigger: TGCAAGCAGCGGCTGGGAGCAGCCGGTCCCTGGGGA...ATCCTGTGTGTGTCTAGGTAGAGATATTGGAAGGCTGCCAGGGGATTTCGAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR GCA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGATCCCCAGGGACCGGCTaGTCCCAGCCGCTGCTTGCA +
Preference number: 4 (lower is better)
Translates to: TATKGIGFGFKGTRREGRSPGTG*SQPLLA
Trigger: TGCAAGCAGCGGCTGGGAGCAGCCGGTCCCTGGGGA...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000518385.5
CDS-3UTR GCA 90 bp GCCTTCCAATATCTCTACCTAGACACACACAGGATAATACATTCAGATTTCCTCTCCTCCTCCTGCGCCTaGTCCCGCCGCCCGCAGCTG +
Preference number: 4 (lower is better)
Translates to: AFQYLYLDTHRIIHSDFLSSSCA*SRRPQL
Trigger: CAGCTGCGGGCGGCGGGAGCAGGCGCAGGAGGAGGA...GAGGAAATCTGAATGTATTATCCTGTGTGTGTCTAGGTAGAGATATTGGAAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR GCA 90 bp CACTGTGAAACACTTAGAAATCAAACCCACGTCATCCTTGAGAGCAGACGGCCGGCTGCTCCCAGCCGCTaGTTGCAACCAGGGCAAAAC +
Preference number: 4 (lower is better)
Translates to: HCETLRNQTHVILESRRPAAPSR*LQPGQN
Trigger: GTTTTGCCCTGGTTGCAAGCAGCGGCTGGGAGCAGC...CGGCCGTCTGCTCTCAAGGATGACGTGGGTTTGATTTCTAAGTGTTTCACAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR GCA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGAGCTGCTCCCAGCCGCTaGTTGCAACCAGGGCAAAAC +
Preference number: 4 (lower is better)
Translates to: TATKGIGFGFKGTRREGRAAPSR*LQPGQN
Trigger: GTTTTGCCCTGGTTGCAAGCAGCGGCTGGGAGCAGC...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000518385.5
CDS-3UTR GCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCATCCTCCTCCTGCGCCTaGTCCCGCCGCCCGCAGCTG +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTASSSCA*SRRPQL
Trigger: CAGCTGCGGGCGGCGGGAGCAGGCGCAGGAGGAGGA...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000518385.5
CDS-3UTR GCA 90 bp ACTTCGAAATCCCCTGGCAGCCTTCCAATATCTCTACCTAGACACACACAGGATCACACAGAGCCTCCCTaGCTACCCTCCTTCCCTGTA +
Preference number: 4 (lower is better)
Translates to: TSKSPGSLPISLPRHTQDHTEPP*LPSFPV
Trigger: TACAGGGAAGGAGGGTAGGCAGGGAGGCTCTGTGTG...ATCCTGTGTGTGTCTAGGTAGAGATATTGGAAGGCTGCCAGGGGATTTCGAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR GCA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGACGGACTCCTTTCCCGTaGCGAGGTTCAGTTTCTGGT +
Preference number: 4 (lower is better)
Translates to: TATKGIGFGFKGTRREGRRTPFP*RGSVSG
Trigger: ACCAGAAACTGAACCTCGGCACGGGAAAGGAGTCCG...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000518385.5
CDS-3UTR GCA 90 bp ACTTCGAAATCCCCTGGCAGCCTTCCAATATCTCTACCTAGACACACACAGGATGTGCTCCGGGAAGGCTaGTCTCTGAAGCTCTTCTTG +
Preference number: 4 (lower is better)
Translates to: TSKSPGSLPISLPRHTQDVLREG*SLKLFL
Trigger: CAAGAAGAGCTTCAGAGAGCAGCCTTCCCGGAGCAC...ATCCTGTGTGTGTCTAGGTAGAGATATTGGAAGGCTGCCAGGGGATTTCGAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR TCA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGAGCAACAAGCAACAGCTaGGGATATGGAGGCTTGGGA +
Preference number: 4 (lower is better)
Translates to: TATKGIGFGFKGTRREGRATSNS*GYGGLG
Trigger: TCCCAAGCCTCCATATCCTCAGCTGTTGCTTGTTGC...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS-3UTR CCA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGAATGTCCACCCCTCAGTaGCAACAAGCAACAGCTGAG +
Preference number: 4 (lower is better)
Translates to: TATKGIGFGFKGTRREGRMSTPQ*QQATAE
Trigger: CTCAGCTGTTGCTTGTTGCCACTGAGGGGTGGACAT...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS-3UTR TCA 90 bp TGCTTTGCACAGTTAGAGGTATACCCATTCCTACCCTCTGTAATTGAGGGACACCCTACCCTCTGTAATTaGGGGACACAGCGTGGCTTT +
Preference number: 4 (lower is better)
Translates to: CFAQLEVYPFLPSVIEGHPTLCN*GTQRGF
Trigger: AAAGCCACGCTGTGTCCCTCAATTACAGAGGGTAGG...GTGTCCCTCAATTACAGAGGGTAGGAATGGGTATACCTCTAACTGTGCAAAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR GCA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGCAAAACGAAGCCTCCTaGCCAGCGCTCGGCGCAGCC +
Preference number: 4 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQQNEAS*PALGAA
Trigger: GGCTGCGCCGAGCGCTGGGCAGGAGGCTTCGTTTTG...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000518385.5
CDS-3UTR GCA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGACAGCACTGGATGGTTTaGGTTCTCCAAGGTCATAGC +
Preference number: 4 (lower is better)
Translates to: TATKGIGFGFKGTRREGRQHWMV*VLQGHS
Trigger: GCTATGACCTTGGAGAACGCAAACCATCCAGTGCTG...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR TCA 90 bp GCCTTCCAATATCTCTACCTAGACACACACAGGATAATACATTCAGATTTCCTCAACCCACGTCATCCTTaGGAGCAGACGGCCGTTAGC +
Preference number: 4 (lower is better)
Translates to: AFQYLYLDTHRIIHSDFLNPRHP*EQTAVS
Trigger: GCTAACGGCCGTCTGCTCTCAAGGATGACGTGGGTT...GAGGAAATCTGAATGTATTATCCTGTGTGTGTCTAGGTAGAGATATTGGAAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR GCA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGCCGACACGGAGTTGGTaGTCCGGGAAGGCTGCTCTC +
Preference number: 4 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQPTRSW*SGKAAL
Trigger: GAGAGCAGCCTTCCCGGAGCACCAACTCCGTGTCGG...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000518385.5
CDS-3UTR GCA 90 bp TGCTTTGCACAGTTAGAGGTATACCCATTCCTACCCTCTGTAATTGAGGGACACTCACTTGTTGGTTTCTaGACTCCCGACACGGAGTTG +
Preference number: 4 (lower is better)
Translates to: CFAQLEVYPFLPSVIEGHSLVGF*TPDTEL
Trigger: CAACTCCGTGTCGGGAGTGCAGAAACCAACAAGTGA...GTGTCCCTCAATTACAGAGGGTAGGAATGGGTATACCTCTAACTGTGCAAAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR GCA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGATCCAGACAGAACCTCTaGCCACAGAGTGGAGTTTAT +
Preference number: 4 (lower is better)
Translates to: TATKGIGFGFKGTRREGRSRQNL*PQSGVY
Trigger: ATAAACTCCACTCTGTGGGCAGAGGTTCTGTCTGGA...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS-3UTR GCA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGAATCAGATGTCAGCTCTaGTCTCTCCAGACAGAACCT +
Preference number: 4 (lower is better)
Translates to: TATKGIGFGFKGTRREGRIRCQL*SLQTEP
Trigger: AGGTTCTGTCTGGAGAGAGCAGAGCTGACATCTGAT...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS-3UTR CCA 90 bp CGGTTAAGCTTCAGTAGACATTTGGAGCACAATTCCAAAGGTAAATCAATCTATCTCCCGACACGGAGTTaGTGCTCCGGGAAGGCTGCT +
Preference number: 4 (lower is better)
Translates to: RLSFSRHLEHNSKGKSIYLPTRS*CSGKAA
Trigger: AGCAGCCTTCCCGGAGCACCAACTCCGTGTCGGGAG...ATAGATTGATTTACCTTTGGAATTGTGCTCCAAATGTCTACTGAAGCTTAACCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCACTCCCGACACGGAGTTaGTGCTCCGGGAAGGCTGCT +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTALPTRS*CSGKAA
Trigger: AGCAGCCTTCCCGGAGCACCAACTCCGTGTCGGGAG...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000518385.5
CDS-3UTR CCA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGACGTGGTTTCCACTTTTaGAGCAGCACTAGTCAACAG +
Preference number: 4 (lower is better)
Translates to: TATKGIGFGFKGTRREGRRGFHF*SSTSQQ
Trigger: CTGTTGACTAGTGCTGCTCCAAAAGTGGAAACCACG...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR CCA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGATTGACTGGACATACCTaGCTTTGGCAAATGCTCTGG +
Preference number: 4 (lower is better)
Translates to: TATKGIGFGFKGTRREGRLTGHT*LWQMLW
Trigger: CCAGAGCATTTGCCAAAGCCAGGTATGTCCAGTCAA...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS-3UTR CCA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGAGAGGATATGGAGGCTTaGGAGCTATCGGTTGCATTA +
Preference number: 4 (lower is better)
Translates to: TATKGIGFGFKGTRREGREDMEA*ELSVAL
Trigger: TAATGCAACCGATAGCTCCCAAGCCTCCATATCCTC...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS-3UTR TCA 90 bp ACTTCGAAATCCCCTGGCAGCCTTCCAATATCTCTACCTAGACACACACAGGATTCCTTCCCTGTAACGTaGGCTACTGTAGTCCATTTA +
Preference number: 4 (lower is better)
Translates to: TSKSPGSLPISLPRHTQDSFPVT*ATVVHL
Trigger: TAAATGGACTACAGTAGCTCACGTTACAGGGAAGGA...ATCCTGTGTGTGTCTAGGTAGAGATATTGGAAGGCTGCCAGGGGATTTCGAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR GCA 90 bp TTTTTCTTTTCCTGGCACGGATATTCCCAGCAGTTGTTATTCTATGAATTGAATCCGACACGGAGTTGGTaGTCCGGGAAGGCTGCTCTC +
Preference number: 4 (lower is better)
Translates to: FFFSWHGYSQQLLFYELNPTRSW*SGKAAL
Trigger: GAGAGCAGCCTTCCCGGAGCACCAACTCCGTGTCGG...ATTCAATTCATAGAATAACAACTGCTGGGAATATCCGTGCCAGGAAAAGAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR GCA 90 bp CACTGTGAAACACTTAGAAATCAAACCCACGTCATCCTTGAGAGCAGACGGCCGAAACTCCTTAGTAGGTaGCTTCTGATAAGCAGCACT +
Preference number: 4 (lower is better)
Translates to: HCETLRNQTHVILESRRPKLLSR*LLISST
Trigger: AGTGCTGCTTATCAGAAGGCACCTACTAAGGAGTTT...CGGCCGTCTGCTCTCAAGGATGACGTGGGTTTGATTTCTAAGTGTTTCACAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CCA 90 bp CACTGTGAAACACTTAGAAATCAAACCCACGTCATCCTTGAGAGCAGACGGCCGCTGAAGCTTCTTCAATaGAGCTGTTGTCAAGGTACA +
Preference number: 4 (lower is better)
Translates to: HCETLRNQTHVILESRRPLKLLQ*SCCQGT
Trigger: TGTACCTTGACAACAGCTCCATTGAAGAAGCTTCAG...CGGCCGTCTGCTCTCAAGGATGACGTGGGTTTGATTTCTAAGTGTTTCACAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CCA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGACAGTATCTTTGGAAGTaGTCGAGATGTTGTCAGCTC +
Preference number: 4 (lower is better)
Translates to: TATKGIGFGFKGTRREGRQYLWK*SRCCQL
Trigger: GAGCTGACAACATCTCGACCACTTCCAAAGATACTG...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR CCA 90 bp CAAACTTCGAAATCCCCTGGCAGCCTTCCAATATCTCTACCTAGACACACACAGTCTGATAAGCAGCACTaGATGGTTTGCGTTCTCCAA +
Preference number: 4 (lower is better)
Translates to: QTSKSPGSLPISLPRHTQSDKQH*MVCVLQ
Trigger: TTGGAGAACGCAAACCATCCAGTGCTGCTTATCAGA...CTGTGTGTGTCTAGGTAGAGATATTGGAAGGCTGCCAGGGGATTTCGAAGTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CCA 90 bp CAAACTTCGAAATCCCCTGGCAGCCTTCCAATATCTCTACCTAGACACACACAGAACTTCGAAATCCCCTaGCAGCCTTCCAATATCTCT +
Preference number: 4 (lower is better)
Translates to: QTSKSPGSLPISLPRHTQNFEIP*QPSNIS
Trigger: AGAGATATTGGAAGGCTGCCAGGGGATTTCGAAGTT...CTGTGTGTGTCTAGGTAGAGATATTGGAAGGCTGCCAGGGGATTTCGAAGTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR TCA 90 bp CAGTCTTGTAAGTTATTTGCAAAAGCAGGCGTCTGTCTTAATATTGCCATCAGTGGGAAGGCTGCTCTCTaGAGCTCTTCTTGCTCTGCT +
Preference number: 4 (lower is better)
Translates to: QSCKLFAKAGVCLNIAISGKAAL*SSSCSA
Trigger: AGCAGAGCAAGAAGAGCTTCAGAGAGCAGCCTTCCC...ACTGATGGCAATATTAAGACAGACGCCTGCTTTTGCAAATAACTTACAAGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR TCA 90 bp CAAACTTCGAAATCCCCTGGCAGCCTTCCAATATCTCTACCTAGACACACACAGAATAGGATACACTCCTaGAGCTTCTTCAATGGAGCT +
Preference number: 4 (lower is better)
Translates to: QTSKSPGSLPISLPRHTQNRIHS*SFFNGA
Trigger: AGCTCCATTGAAGAAGCTTCAGGAGTGTATCCTATT...CTGTGTGTGTCTAGGTAGAGATATTGGAAGGCTGCCAGGGGATTTCGAAGTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR TCA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGAGTCCATTTTCCTTTCTaGGTCAGAGAGGTGAACTTT +
Preference number: 4 (lower is better)
Translates to: TATKGIGFGFKGTRREGRVHFPF*VREVNF
Trigger: AAAGTTCACCTCTCTGACTCAGAAAGGAAAATGGAC...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR GCA 90 bp ATATCTCTACCTAGACACACACAGGATAATACATTCAGATTTCCTCTGGCCAATCGGACTCCTTTCCCGTaGCGAGGTTCAGTTTCTGGT +
Preference number: 4 (lower is better)
Translates to: ISLPRHTQDNTFRFPLANRTPFP*RGSVSG
Trigger: ACCAGAAACTGAACCTCGGCACGGGAAAGGAGTCCG...ATTGGCCAGAGGAAATCTGAATGTATTATCCTGTGTGTGTCTAGGTAGAGATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR GCA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGCTCCCAGCCGCTGCTTaGAACCAGGGCAAAACGAAG +
Preference number: 4 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQLPAAA*NQGKTK
Trigger: CTTCGTTTTGCCCTGGTTGCAAGCAGCGGCTGGGAG...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000518385.5
CDS-3UTR GCA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGAAAACTCCTTAGTAGGTaGCTTCTGATAAGCAGCACT +
Preference number: 4 (lower is better)
Translates to: TATKGIGFGFKGTRREGRKLLSR*LLISST
Trigger: AGTGCTGCTTATCAGAAGGCACCTACTAAGGAGTTT...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR TCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCAGGGAAGGCTGCTCTCTaGAGCTCTTCTTGCTCTGCT +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTAGKAAL*SSSCSA
Trigger: AGCAGAGCAAGAAGAGCTTCAGAGAGCAGCCTTCCC...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000518385.5
CDS-3UTR GCA 90 bp CGGTTAAGCTTCAGTAGACATTTGGAGCACAATTCCAAAGGTAAATCAATCTATGCTCTGCTGTGGTTTTaGTCCTCCGCGGACTCCTTT +
Preference number: 4 (lower is better)
Translates to: RLSFSRHLEHNSKGKSIYALLWF*SSADSF
Trigger: AAAGGAGTCCGCGGAGGAGCAAAACCACAGCAGAGC...ATAGATTGATTTACCTTTGGAATTGTGCTCCAAATGTCTACTGAAGCTTAACCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR GCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCAGCTCTGCTGTGGTTTTaGTCCTCCGCGGACTCCTTT +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTAALLWF*SSADSF
Trigger: AAAGGAGTCCGCGGAGGAGCAAAACCACAGCAGAGC...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000518385.5
CDS-3UTR GCA 90 bp TTTTTCTTTTCCTGGCACGGATATTCCCAGCAGTTGTTATTCTATGAATTGAATCTCCCAGCCGCTGCTTaGAACCAGGGCAAAACGAAG +
Preference number: 4 (lower is better)
Translates to: FFFSWHGYSQQLLFYELNLPAAA*NQGKTK
Trigger: CTTCGTTTTGCCCTGGTTGCAAGCAGCGGCTGGGAG...ATTCAATTCATAGAATAACAACTGCTGGGAATATCCGTGCCAGGAAAAGAAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR GCA 90 bp GCCTTCCAATATCTCTACCTAGACACACACAGGATAATACATTCAGATTTCCTCCAGCACTGGATGGTTTaGGTTCTCCAAGGTCATAGC +
Preference number: 4 (lower is better)
Translates to: AFQYLYLDTHRIIHSDFLQHWMV*VLQGHS
Trigger: GCTATGACCTTGGAGAACGCAAACCATCCAGTGCTG...GAGGAAATCTGAATGTATTATCCTGTGTGTGTCTAGGTAGAGATATTGGAAGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR GCA 90 bp ACTTCGAAATCCCCTGGCAGCCTTCCAATATCTCTACCTAGACACACACAGGATGTGGCCAAAGGAATCTaGAGCAACTTCTTAAAATAC +
Preference number: 4 (lower is better)
Translates to: TSKSPGSLPISLPRHTQDVAKGI*SNFLKY
Trigger: GTATTTTAAGAAGTTGCTGCAGATTCCTTTGGCCAC...ATCCTGTGTGTGTCTAGGTAGAGATATTGGAAGGCTGCCAGGGGATTTCGAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CCA 90 bp CTTGTAAGTTATTTGCAAAAGCAGGCGTCTGTCTTAATATTGCCATCAGTTATCCTTCTTGCTCTGCTGTaGTTTTGCTCCTCCGCGGAC +
Preference number: 4 (lower is better)
Translates to: LVSYLQKQASVLILPSVILLALL*FCSSAD
Trigger: GTCCGCGGAGGAGCAAAACCACAGCAGAGCAAGAAG...GATAACTGATGGCAATATTAAGACAGACGCCTGCTTTTGCAAATAACTTACAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCACTTCTTGCTCTGCTGTaGTTTTGCTCCTCCGCGGAC +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTALLALL*FCSSAD
Trigger: GTCCGCGGAGGAGCAAAACCACAGCAGAGCAAGAAG...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000518385.5
CDS-3UTR CCA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGCGCCCTCTCACTTGTTaGTTTCTGCACTCCCGACAC +
Preference number: 4 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQRPLTC*FLHSRH
Trigger: GTGTCGGGAGTGCAGAAACCAACAAGTGAGAGGGCG...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000518385.5
CDS-3UTR CCA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGAGCTTCAGTAGACATTTaGAGCACAATTCCAAAGGTA +
Preference number: 4 (lower is better)
Translates to: TATKGIGFGFKGTRREGRASVDI*STIPKV
Trigger: TACCTTTGGAATTGTGCTCCAAATGTCTACTGAAGC...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CCA 90 bp CAAACTTCGAAATCCCCTGGCAGCCTTCCAATATCTCTACCTAGACACACACAGAAATTTTTCTTTTCCTaGCACGGATATTCCCAGCAG +
Preference number: 4 (lower is better)
Translates to: QTSKSPGSLPISLPRHTQKFFFS*HGYSQQ
Trigger: CTGCTGGGAATATCCGTGCCAGGAAAAGAAAAATTT...CTGTGTGTGTCTAGGTAGAGATATTGGAAGGCTGCCAGGGGATTTCGAAGTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CCA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGACCTCTGCCCACAGAGTaGAGTTTATTATTTAATTGG +
Preference number: 4 (lower is better)
Translates to: TATKGIGFGFKGTRREGRPLPTE*SLLFNW
Trigger: CCAATTAAATAATAAACTCCACTCTGTGGGCAGAGG...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS-3UTR TCA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGATTTAAACAGACTGTCTaGGTGTTTCTCAGTATACAC +
Preference number: 4 (lower is better)
Translates to: TATKGIGFGFKGTRREGRFKQTV*VFLSIH
Trigger: GTGTATACTGAGAAACACTCAGACAGTCTGTTTAAA...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR GCA 90 bp CACTGTGAAACACTTAGAAATCAAACCCACGTCATCCTTGAGAGCAGACGGCCGATAATATTTTGCCACTaGTATTCACAGAACACTGCA +
Preference number: 4 (lower is better)
Translates to: HCETLRNQTHVILESRRPIIFCH*YSQNTA
Trigger: TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTAT...CGGCCGTCTGCTCTCAAGGATGACGTGGGTTTGATTTCTAAGTGTTTCACAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CCA 90 bp TGCTTTGCACAGTTAGAGGTATACCCATTCCTACCCTCTGTAATTGAGGGACACAGTCAACAGTATCTTTaGAAGTGGTCGAGATGTTGT +
Preference number: 4 (lower is better)
Translates to: CFAQLEVYPFLPSVIEGHSQQYL*KWSRCC
Trigger: ACAACATCTCGACCACTTCCAAAGATACTGTTGACT...GTGTCCCTCAATTACAGAGGGTAGGAATGGGTATACCTCTAACTGTGCAAAGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCACAACAGCTGAGGATATaGAGGCTTGGGAGCTATCGG +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTAQQLRI*RLGSYR
Trigger: CCGATAGCTCCCAAGCCTCCATATCCTCAGCTGTTG...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS-3UTR TCA 90 bp GCCTTCCAATATCTCTACCTAGACACACACAGGATAATACATTCAGATTTCCTCTCAGGTGACTTTGTCTaGGCAGGTATCTTGTTCTGT +
Preference number: 4 (lower is better)
Translates to: AFQYLYLDTHRIIHSDFLSGDFV*AGILFC
Trigger: ACAGAACAAGATACCTGCTCAGACAAAGTCACCTGA...GAGGAAATCTGAATGTATTATCCTGTGTGTGTCTAGGTAGAGATATTGGAAGGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR TCA 90 bp ATATCTCTACCTAGACACACACAGGATAATACATTCAGATTTCCTCTGGCCAATTTTGCTGTCTTCTTCTaGCTTGGACGGCTCACAGTT +
Preference number: 4 (lower is better)
Translates to: ISLPRHTQDNTFRFPLANFAVFF*LGRLTV
Trigger: AACTGTGAGCCGTCCAAGTCAGAAGAAGACAGCAAA...ATTGGCCAGAGGAAATCTGAATGTATTATCCTGTGTGTGTCTAGGTAGAGATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR GCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCATCACTTGTTGGTTTCTaGACTCCCGACACGGAGTTG +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTASLVGF*TPDTEL
Trigger: CAACTCCGTGTCGGGAGTGCAGAAACCAACAAGTGA...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000518385.5
CDS-3UTR GCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCACAGCACTGGATGGTTTaGGTTCTCCAAGGTCATAGC +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTAQHWMV*VLQGHS
Trigger: GCTATGACCTTGGAGAACGCAAACCATCCAGTGCTG...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR GCA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGATCATTAACACCAGTCTaGAACAAGTTACATAGAATC +
Preference number: 4 (lower is better)
Translates to: TATKGIGFGFKGTRREGRSLTPV*NKLHRI
Trigger: GATTCTATGTAACTTGTTGCAGACTGGTGTTAATGA...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR TCA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGATAAATTCGCTGGCTTaGAAGGGAGCTACGGCAGAA +
Preference number: 4 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQINSLA*KGATAE
Trigger: TTCTGCCGTAGCTCCCTTTCAAGCCAGCGAATTTAT...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000518385.5
CDS-3UTR CCA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGCGTGGTTTCCACTTTTaGAGCAGCACTAGTCAACAG +
Preference number: 4 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQRGFHF*SSTSQQ
Trigger: CTGTTGACTAGTGCTGCTCCAAAAGTGGAAACCACG...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR CCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCACGTGGTTTCCACTTTTaGAGCAGCACTAGTCAACAG +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTARGFHF*SSTSQQ
Trigger: CTGTTGACTAGTGCTGCTCCAAAAGTGGAAACCACG...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR CCA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGATAAGCAGCACTGGATaGTTTGCGTTCTCCAAGGTC +
Preference number: 4 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQISSTG*FAFSKV
Trigger: GACCTTGGAGAACGCAAACCATCCAGTGCTGCTTAT...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR CCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCAATAAGCAGCACTGGATaGTTTGCGTTCTCCAAGGTC +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTAISSTG*FAFSKV
Trigger: GACCTTGGAGAACGCAAACCATCCAGTGCTGCTTAT...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR TCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCATCAGGTGACTTTGTCTaGGCAGGTATCTTGTTCTGT +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTASGDFV*AGILFC
Trigger: ACAGAACAAGATACCTGCTCAGACAAAGTCACCTGA...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR TCA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGTCAGGTGACTTTGTCTaGGCAGGTATCTTGTTCTGT +
Preference number: 4 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQSGDFV*AGILFC
Trigger: ACAGAACAAGATACCTGCTCAGACAAAGTCACCTGA...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR TCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCAGTTGCATTATCCCTTTaGCTGGACATACCTGGCTTT +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTAVALSL*LDIPGF
Trigger: AAAGCCAGGTATGTCCAGTCAAAGGGATAATGCAAC...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS-3UTR GCA 90 bp GCCTTCCAATATCTCTACCTAGACACACACAGGATAATACATTCAGATTTCCTCAATTTCACTCTGCTTTaGACAGTTAGAGGTATACCC +
Preference number: 4 (lower is better)
Translates to: AFQYLYLDTHRIIHSDFLNFTLL*TVRGIP
Trigger: GGGTATACCTCTAACTGTGCAAAGCAGAGTGAAATT...GAGGAAATCTGAATGTATTATCCTGTGTGTGTCTAGGTAGAGATATTGGAAGGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR GCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCATTGGGAGCTATCGGTTaGATTATCCCTTTGACTGGA +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTALGAIG*IIPLTG
Trigger: TCCAGTCAAAGGGATAATGCAACCGATAGCTCCCAA...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS-3UTR CCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCACAGTATCTTTGGAAGTaGTCGAGATGTTGTCAGCTC +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTAQYLWK*SRCCQL
Trigger: GAGCTGACAACATCTCGACCACTTCCAAAGATACTG...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR CCA 90 bp CTTGTAAGTTATTTGCAAAAGCAGGCGTCTGTCTTAATATTGCCATCAGTTATCGTATATTCAGCGTCGTaGTTTCCACTTTTGGAGCAG +
Preference number: 4 (lower is better)
Translates to: LVSYLQKQASVLILPSVIVYSAS*FPLLEQ
Trigger: CTGCTCCAAAAGTGGAAACCACGACGCTGAATATAC...GATAACTGATGGCAATATTAAGACAGACGCCTGCTTTTGCAAATAACTTACAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CCA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGGTATATTCAGCGTCGTaGTTTCCACTTTTGGAGCAG +
Preference number: 4 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQVYSAS*FPLLEQ
Trigger: CTGCTCCAAAAGTGGAAACCACGACGCTGAATATAC...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR CCA 90 bp TTTTTCTTTTCCTGGCACGGATATTCCCAGCAGTTGTTATTCTATGAATTGAATATAAGCAGCACTGGATaGTTTGCGTTCTCCAAGGTC +
Preference number: 4 (lower is better)
Translates to: FFFSWHGYSQQLLFYELNISSTG*FAFSKV
Trigger: GACCTTGGAGAACGCAAACCATCCAGTGCTGCTTAT...ATTCAATTCATAGAATAACAACTGCTGGGAATATCCGTGCCAGGAAAAGAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CCA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGTCTGATAAGCAGCACTaGATGGTTTGCGTTCTCCAA +
Preference number: 4 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQSDKQH*MVCVLQ
Trigger: TTGGAGAACGCAAACCATCCAGTGCTGCTTATCAGA...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR CCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCATCTGATAAGCAGCACTaGATGGTTTGCGTTCTCCAA +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTASDKQH*MVCVLQ
Trigger: TTGGAGAACGCAAACCATCCAGTGCTGCTTATCAGA...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR CCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCACATTATCCCTTTGACTaGACATACCTGGCTTTGGCA +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTAHYPFD*TYLALA
Trigger: TGCCAAAGCCAGGTATGTCCAGTCAAAGGGATAATG...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS-3UTR TCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCAGTCCATTTTCCTTTCTaGGTCAGAGAGGTGAACTTT +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTAVHFPF*VREVNF
Trigger: AAAGTTCACCTCTCTGACTCAGAAAGGAAAATGGAC...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR TCA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGGTCCATTTTCCTTTCTaGGTCAGAGAGGTGAACTTT +
Preference number: 4 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQVHFPF*VREVNF
Trigger: AAAGTTCACCTCTCTGACTCAGAAAGGAAAATGGAC...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR TCA 90 bp CGGTTAAGCTTCAGTAGACATTTGGAGCACAATTCCAAAGGTAAATCAATCTATTTGGTAAGGTCAATCTaGGACATGCTGACACAAATG +
Preference number: 4 (lower is better)
Translates to: RLSFSRHLEHNSKGKSIYLVRSI*DMLTQM
Trigger: CATTTGTGTCAGCATGTCTCAGATTGACCTTACCAA...ATAGATTGATTTACCTTTGGAATTGTGCTCCAAATGTCTACTGAAGCTTAACCG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR TCA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGTTGGTAAGGTCAATCTaGGACATGCTGACACAAATG +
Preference number: 4 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQLVRSI*DMLTQM
Trigger: CATTTGTGTCAGCATGTCTCAGATTGACCTTACCAA...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR TCA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGCAGGCTCTTTGGTCTTaGTTTACAGACACTGTGAAA +
Preference number: 4 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQQALWS*FTDTVK
Trigger: TTTCACAGTGTCTGTAAATCAAGACCAAAGAGCCTG...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR TCA 90 bp TTTTTCTTTTCCTGGCACGGATATTCCCAGCAGTTGTTATTCTATGAATTGAATAATTGGTTCTGTAAGTaGTGGGGCAGGAATCTGAGA +
Preference number: 4 (lower is better)
Translates to: FFFSWHGYSQQLLFYELNNWFCK*WGRNLR
Trigger: TCTCAGATTCCTGCCCCATCACTTACAGAACCAATT...ATTCAATTCATAGAATAACAACTGCTGGGAATATCCGTGCCAGGAAAAGAAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR GCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCAAAACTCCTTAGTAGGTaGCTTCTGATAAGCAGCACT +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTAKLLSR*LLISST
Trigger: AGTGCTGCTTATCAGAAGGCACCTACTAAGGAGTTT...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR GCA 90 bp CTTGTAAGTTATTTGCAAAAGCAGGCGTCTGTCTTAATATTGCCATCAGTTATCTTGCTGTTGCAAATCTaGCCAAAGCTACAGGTAATG +
Preference number: 4 (lower is better)
Translates to: LVSYLQKQASVLILPSVILLLQI*PKLQVM
Trigger: CATTACCTGTAGCTTTGGGCAGATTTGCAACAGCAA...GATAACTGATGGCAATATTAAGACAGACGCCTGCTTTTGCAAATAACTTACAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CCA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGCTGAAGCTTCTTCAATaGAGCTGTTGTCAAGGTACA +
Preference number: 4 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQLKLLQ*SCCQGT
Trigger: TGTACCTTGACAACAGCTCCATTGAAGAAGCTTCAG...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000519914.5
3UTR CAA 72 bp TGGCACGGATATTCCCAGCAGTTGTTATTCTATGAATaGAATTTCACTCTGCTTTGCACAGTTAGAGGTATA +
Preference number: 4 (lower is better)
Translates to: WHGYSQQLLFYE*NFTLLCTVRGI
Trigger: TATACCTCTAACTGTGCAAAGCAGAGTGAAATTCAATTCATAGAATAACAACTGCTGGGAATATCCGTGCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR TCA 90 bp CGGTTAAGCTTCAGTAGACATTTGGAGCACAATTCCAAAGGTAAATCAATCTATTCAATCCTAAAGCAGTaGGACCCTCATTTTAACACA +
Preference number: 4 (lower is better)
Translates to: RLSFSRHLEHNSKGKSIYSILKQ*DPHFNT
Trigger: TGTGTTAAAATGAGGGTCTCACTGCTTTAGGATTGA...ATAGATTGATTTACCTTTGGAATTGTGCTCCAAATGTCTACTGAAGCTTAACCG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCAAGTCAACAGTATCTTTaGAAGTGGTCGAGATGTTGT +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTASQQYL*KWSRCC
Trigger: ACAACATCTCGACCACTTCCAAAGATACTGTTGACT...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR TCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCATTTAAACAGACTGTCTaGGTGTTTCTCAGTATACAC +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTAFKQTV*VFLSIH
Trigger: GTGTATACTGAGAAACACTCAGACAGTCTGTTTAAA...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR GCA 90 bp CAGTCTTGTAAGTTATTTGCAAAAGCAGGCGTCTGTCTTAATATTGCCATCAGTTTTCCAAAGACAAATTaGACCATGACAGCTACAAAA +
Preference number: 4 (lower is better)
Translates to: QSCKLFAKAGVCLNIAISFPKTN*TMTATK
Trigger: TTTTGTAGCTGTCATGGTGCAATTTGTCTTTGGAAA...ACTGATGGCAATATTAAGACAGACGCCTGCTTTTGCAAATAACTTACAAGACTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR GCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCATTATCCTATAAAGGTTaGAAACTTCGAAATCCCCTG +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTALSYKG*KLRNPL
Trigger: CAGGGGATTTCGAAGTTTGCAACCTTTATAGGATAA...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR GCA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGTGCTCACATGTAAGATaGCAAATGAAAACATGTCCA +
Preference number: 4 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQCSHVR*QMKTCP
Trigger: TGGACATGTTTTCATTTGGCATCTTACATGTGAGCA...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS-3UTR TCA 90 bp TTTTTCTTTTCCTGGCACGGATATTCCCAGCAGTTGTTATTCTATGAATTGAATTTTAAACAGACTGTCTaGGTGTTTCTCAGTATACAC +
Preference number: 4 (lower is better)
Translates to: FFFSWHGYSQQLLFYELNFKQTV*VFLSIH
Trigger: GTGTATACTGAGAAACACTCAGACAGTCTGTTTAAA...ATTCAATTCATAGAATAACAACTGCTGGGAATATCCGTGCCAGGAAAAGAAAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR GCA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGATAATATTTTGCCACTaGTATTCACAGAACACTGCA +
Preference number: 4 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQIIFCH*YSQNTA
Trigger: TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTAT...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR GCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCAATAATATTTTGCCACTaGTATTCACAGAACACTGCA +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTAIIFCH*YSQNTA
Trigger: TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTAT...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR GCA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCATTTCCAAAGACAAATTaGACCATGACAGCTACAAAA +
Preference number: 4 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTAFPKTN*TMTATK
Trigger: TTTTGTAGCTGTCATGGTGCAATTTGTCTTTGGAAA...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR GCA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGTTTCCAAAGACAAATTaGACCATGACAGCTACAAAA +
Preference number: 4 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQFPKTN*TMTATK
Trigger: TTTTGTAGCTGTCATGGTGCAATTTGTCTTTGGAAA...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
3UTR CAA 72 bp ATTCAGATCTTTGGAATTTACAGTCTTGTAAGTTATTaGCAAAAGCAGGCGTCTGTCTTAATATTGCCATCA +
Preference number: 4 (lower is better)
Translates to: IQIFGIYSLVSY*QKQASVLILPS
Trigger: TGATGGCAATATTAAGACAGACGCCTGCTTTTGCAAATAACTTACAAGACTGTAAATTCCAAAGATCTGAAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
3UTR CAA 72 bp CATTTATTAGTTCTTCGGTTAAGCTTCAGTAGACATTaGGAGCACAATTCCAAAGGTAAATCAATCTATAGG +
Preference number: 4 (lower is better)
Translates to: HLLVLRLSFSRH*EHNSKGKSIYR
Trigger: CCTATAGATTGATTTACCTTTGGAATTGTGCTCCAAATGTCTACTGAAGCTTAACCGAAGAACTAATAAATG
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS GCA 90 bp GCGCGCCGCATATTCCCCAGGGACCGGCTGCTCCCAGCCGCTGCTTaGAACCAGGGCAAAACGAAGCCTCCTGCCCAGCGCTCGGCGCAG +
Preference number: 5 (lower is better)
Translates to: ARRIFPRDRLLPAAA*NQGKTKPPAQRSAQ
Trigger: CTGCGCCGAGCGCTGGGCAGGAGGCTTCGTTTTGCCCTGGTTGCAAGCAGCGGCTGGGAGCAGCCGGTCCCTGGGGAATATGCGGCGCGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000520233.1
CDS GCA 90 bp CCACGCGCGCCGCATATTCCCCAGGGACCGGCTGCTCCCAGCCGCTaGTTGCAACCAGGGCAAAACGAAGCCTCCTGCCCAGCGCTCGGC +
Preference number: 5 (lower is better)
Translates to: PRAPHIPQGPAAPSR*LQPGQNEASCPALG
Trigger: GCCGAGCGCTGGGCAGGAGGCTTCGTTTTGCCCTGGTTGCAAGCAGCGGCTGGGAGCAGCCGGTCCCTGGGGAATATGCGGCGCGCGTGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000520233.1
CDS CCA 90 bp GCCGCCCGCAGCTGCGCCCCGGGAACGCGGCGCCCTCTCACTTGTTaGTTTCTGCACTCCCGACACGGAGTTGGTGCTCCGGGAAGGCTG +
Preference number: 5 (lower is better)
Translates to: AARSCAPGTRRPLTC*FLHSRHGVGAPGRL
Trigger: CAGCCTTCCCGGAGCACCAACTCCGTGTCGGGAGTGCAGAAACCAACAAGTGAGAGGGCGCCGCGTTCCCGGGGCGCAGCTGCGGGCGGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000520233.1
CDS TCA 90 bp GCTCTGCTCTCGACTCCGCCGACACGCAGGCCACCAAGCCCAAGGTaGGCAGGATCCACGCGCGCCGCATATTCCCCAGGGACCGGCTGC +
Preference number: 5 (lower is better)
Translates to: ALLSTPPTRRPPSPR*AGSTRAAYSPGTGC
Trigger: GCAGCCGGTCCCTGGGGAATATGCGGCGCGCGTGGATCCTGCTCACCTTGGGCTTGGTGGCCTGCGTGTCGGCGGAGTCGAGAGCAGAGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS TCA 90 bp CAGCTCTCACCGACTCCGCCGACACGCAGGCCACCAAGCCCAAGGTaGGCAGGATCCACGCGCGCCGCATATTCCCCAGGGACCGGCTGC +
Preference number: 5 (lower is better)
Translates to: QLSPTPPTRRPPSPR*AGSTRAAYSPGTGC
Trigger: GCAGCCGGTCCCTGGGGAATATGCGGCGCGCGTGGATCCTGCTCACCTTGGGCTTGGTGGCCTGCGTGTCGGCGGAGTCGGTGAGAGCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000518385.5
CDS GCA 90 bp GCTGCTCCCAGCCGCTGCTTGCAACCAGGGCAAAACGAAGCCTCCTaGCCAGCGCTCGGCGCAGCCCGCGCACACGAATCCGGAGCAGAG +
Preference number: 5 (lower is better)
Translates to: AAPSRCLQPGQNEAS*PALGAARAHESGAE
Trigger: CTCTGCTCCGGATTCGTGTGCGCGGGCTGCGCCGAGCGCTGGGCAGGAGGCTTCGTTTTGCCCTGGTTGCAAGCAGCGGCTGGGAGCAGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000520233.1
CDS GCA 90 bp GCAGCTGCGCCCCGGGAACGCGGCGCCCTCTCACTTGTTGGTTTCTaGACTCCCGACACGGAGTTGGTGCTCCGGGAAGGCTGCTCTCTG +
Preference number: 5 (lower is better)
Translates to: AAAPRERGALSLVGF*TPDTELVLREGCSL
Trigger: CAGAGAGCAGCCTTCCCGGAGCACCAACTCCGTGTCGGGAGTGCAGAAACCAACAAGTGAGAGGGCGCCGCGTTCCCGGGGCGCAGCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000520233.1
CDS TCA 90 bp TTTTCCTTATCGACTCCGCCGACACGCAGGCCACCAAGCCCAAGGTaGGCAGGATCCACGCGCGCCGCATATTCCCCAGGGACCGGCTGC +
Preference number: 5 (lower is better)
Translates to: FSLSTPPTRRPPSPR*AGSTRAAYSPGTGC
Trigger: GCAGCCGGTCCCTGGGGAATATGCGGCGCGCGTGGATCCTGCTCACCTTGGGCTTGGTGGCCTGCGTGTCGGCGGAGTCGATAAGGAAAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000520233.1
CDS TCA 90 bp TCTGCACTCCCGACACGGAGTTGGTGCTCCGGGAAGGCTGCTCTCTaGAGCTCTTCTTGCTCTGCTGTGGTTTTGCTCCTCCGCGGACTC +
Preference number: 5 (lower is better)
Translates to: SALPTRSWCSGKAAL*SSSCSAVVLLLRGL
Trigger: GAGTCCGCGGAGGAGCAAAACCACAGCAGAGCAAGAAGAGCTTCAGAGAGCAGCCTTCCCGGAGCACCAACTCCGTGTCGGGAGTGCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519587.1
ENST00000520233.1
CDS GCA 90 bp GAGTTGGTGCTCCGGGAAGGCTGCTCTCTGAAGCTCTTCTTGCTCTaGTGTGGTTTTGCTCCTCCGCGGACTCCTTTCCCGTGCCGAGGT +
Preference number: 5 (lower is better)
Translates to: ELVLREGCSLKLFLL*CGFAPPRTPFPCRG
Trigger: ACCTCGGCACGGGAAAGGAGTCCGCGGAGGAGCAAAACCACAGCAGAGCAAGAAGAGCTTCAGAGAGCAGCCTTCCCGGAGCACCAACTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519587.1
ENST00000520233.1
CDS CCA 90 bp GGTGCTCCGGGAAGGCTGCTCTCTGAAGCTCTTCTTGCTCTGCTGTaGTTTTGCTCCTCCGCGGACTCCTTTCCCGTGCCGAGGTTCAGT +
Preference number: 5 (lower is better)
Translates to: GAPGRLLSEALLALL*FCSSADSFPVPRFS
Trigger: ACTGAACCTCGGCACGGGAAAGGAGTCCGCGGAGGAGCAAAACCACAGCAGAGCAAGAAGAGCTTCAGAGAGCAGCCTTCCCGGAGCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519587.1
ENST00000520233.1
CDS GCA 90 bp CCGGGAAGGCTGCTCTCTGAAGCTCTTCTTGCTCTGCTGTGGTTTTaGTCCTCCGCGGACTCCTTTCCCGTGCCGAGGTTCAGTTTCTGG +
Preference number: 5 (lower is better)
Translates to: PGRLLSEALLALLWF*SSADSFPVPRFSFW
Trigger: CCAGAAACTGAACCTCGGCACGGGAAAGGAGTCCGCGGAGGAGCAAAACCACAGCAGAGCAAGAAGAGCTTCAGAGAGCAGCCTTCCCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519587.1
ENST00000520233.1
CDS GCA 90 bp GTTGGTTTCTGCACTCCCGACACGGAGTTGGTGCTCCGGGAAGGCTaGTCTCTGAAGCTCTTCTTGCTCTGCTGTGGTTTTGCTCCTCCG +
Preference number: 5 (lower is better)
Translates to: VGFCTPDTELVLREG*SLKLFLLCCGFAPP
Trigger: CGGAGGAGCAAAACCACAGCAGAGCAAGAAGAGCTTCAGAGAGCAGCCTTCCCGGAGCACCAACTCCGTGTCGGGAGTGCAGAAACCAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519587.1
ENST00000520233.1
CDS-3UTR CAA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGAACTCCCGACACGGAGTaGGTGCTCCGGGAAGGCTGC +
Preference number: 5 (lower is better)
Translates to: TATKGIGFGFKGTRREGRTPDTE*VLREGC
Trigger: GCAGCCTTCCCGGAGCACCAACTCCGTGTCGGGAGT...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000518385.5
CDS-3UTR CAA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGAGCGCCCTCTCACTTGTaGGTTTCTGCACTCCCGACA +
Preference number: 5 (lower is better)
Translates to: TATKGIGFGFKGTRREGRAPSHL*VSALPT
Trigger: TGTCGGGAGTGCAGAAACCAACAAGTGAGAGGGCGC...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000518385.5
CDS-3UTR CAA 90 bp GCCTTCCAATATCTCTACCTAGACACACACAGGATAATACATTCAGATTTCCTCGCGGCGCCCTCTCACTaGTTGGTTTCTGCACTCCCG +
Preference number: 5 (lower is better)
Translates to: AFQYLYLDTHRIIHSDFLAAPSH*LVSALP
Trigger: CGGGAGTGCAGAAACCAACAAGTGAGAGGGCGCCGC...GAGGAAATCTGAATGTATTATCCTGTGTGTGTCTAGGTAGAGATATTGGAAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS CCA 90 bp CGTCGTGGTTTCCACTTTTGGAGCAGCACTAGTCAACAGTATCTTTaGAAGTGGTCGAGATGTTGTCAGCTCTGGACTCTCTACATCCTC +
Preference number: 5 (lower is better)
Translates to: RRGFHFWSSTSQQYL*KWSRCCQLWTLYIL
Trigger: GAGGATGTAGAGAGTCCAGAGCTGACAACATCTCGACCACTTCCAAAGATACTGTTGACTAGTGCTGCTCCAAAAGTGGAAACCACGACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
ENST00000521590.5
ENST00000522911.5
ENST00000523877.1
CDS CCA 90 bp ATGCTCACATGTAAGATGCCAAATGAAAACATGTCCACCCCTCAGTaGCAACAAGCAACAGCTGAGGATATGGAGGCTTGGGAGCTATCG +
Preference number: 5 (lower is better)
Translates to: MLTCKMPNENMSTPQ*QQATAEDMEAWELS
Trigger: CGATAGCTCCCAAGCCTCCATATCCTCAGCTGTTGCTTGTTGCCACTGAGGGGTGGACATGTTTTCATTTGGCATCTTACATGTGAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS CCA 90 bp GGTGCCACTGATGTTGGCTGTTCCTGTTGGATGCCTCTTATAGAGTaGGGCTCTTCTTATACCACTGAGAAAGCGAGTTCCTTGAAGATG +
Preference number: 5 (lower is better)
Translates to: GATDVGCSCWMPLIE*GSSYTTEKASSLKM
Trigger: CATCTTCAAGGAACTCGCTTTCTCAGTGGTATAAGAAGAGCCCCACTCTATAAGAGGCATCCAACAGGAACAGCCAACATCAGTGGCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000523877.1
CDS CCA 90 bp CAGCTCTGCTCTTTGGAAGGTGCCACTGATGTTGGCTGTTCCTGTTaGATGCCTCTTATAGAGTGGGGCTCTTCTTATACCACTGAGAAA +
Preference number: 5 (lower is better)
Translates to: QLCSLEGATDVGCSC*MPLIEWGSSYTTEK
Trigger: TTTCTCAGTGGTATAAGAAGAGCCCCACTCTATAAGAGGCATCCAACAGGAACAGCCAACATCAGTGGCACCTTCCAAAGAGCAGAGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000523877.1
CDS-3UTR CAA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGAGAAGTGGTCGAGATGTaGTCAGCTCTGGACTCTCTA +
Preference number: 5 (lower is better)
Translates to: TATKGIGFGFKGTRREGREVVEM*SALDSL
Trigger: TAGAGAGTCCAGAGCTGACAACATCTCGACCACTTC...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS CCA 90 bp GGTTTCCACTTTTGGAGCAGCACTAGTCAACAGTATCTTTGGAAGTaGTCGAGATGTTGTCAGCTCTGGACTCTCTACATCCTCATCAGC +
Preference number: 5 (lower is better)
Translates to: GFHFWSSTSQQYLWK*SRCCQLWTLYILIS
Trigger: GCTGATGAGGATGTAGAGAGTCCAGAGCTGACAACATCTCGACCACTTCCAAAGATACTGTTGACTAGTGCTGCTCCAAAAGTGGAAACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
ENST00000521590.5
ENST00000522911.5
ENST00000523877.1
CDS-3UTR CAA 90 bp GCCTTCCAATATCTCTACCTAGACACACACAGGATAATACATTCAGATTTCCTCGCGCCCTCTCACTTGTaGGTTTCTGCACTCCCGACA +
Preference number: 5 (lower is better)
Translates to: AFQYLYLDTHRIIHSDFLAPSHL*VSALPT
Trigger: TGTCGGGAGTGCAGAAACCAACAAGTGAGAGGGCGC...GAGGAAATCTGAATGTATTATCCTGTGTGTGTCTAGGTAGAGATATTGGAAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CAA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGGCGGCGCCCTCTCACTaGTTGGTTTCTGCACTCCCG +
Preference number: 5 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQAAPSH*LVSALP
Trigger: CGGGAGTGCAGAAACCAACAAGTGAGAGGGCGCCGC...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000518385.5
CDS-3UTR CAA 90 bp CACTGTGAAACACTTAGAAATCAAACCCACGTCATCCTTGAGAGCAGACGGCCGTCATCGACAGGCTCTTaGGTCTTGATTTACAGACAC +
Preference number: 5 (lower is better)
Translates to: HCETLRNQTHVILESRRPSSTGS*VLIYRH
Trigger: GTGTCTGTAAATCAAGACCAAAGAGCCTGTCGATGA...CGGCCGTCTGCTCTCAAGGATGACGTGGGTTTGATTTCTAAGTGTTTCACAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CAA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGATGGACATACCTGGCTTaGGCAAATGCTCTGGAACAA +
Preference number: 5 (lower is better)
Translates to: TATKGIGFGFKGTRREGRWTYLA*ANALEQ
Trigger: TTGTTCCAGAGCATTTGCCAAAGCCAGGTATGTCCA...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS TCA 90 bp GCCAGACGCAGAAGCGTAGTCATCGTCATCAATAGGATACACTCCTaGAGCTTCTTCAATGGAGCTGTTGTCAAGGTACATGTCTTTATC +
Preference number: 5 (lower is better)
Translates to: ARRRSVVIVINRIHS*SFFNGAVVKVHVFI
Trigger: GATAAAGACATGTACCTTGACAACAGCTCCATTGAAGAAGCTTCAGGAGTGTATCCTATTGATGACGATGACTACGCTTCTGCGTCTGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000302190.9
ENST00000519914.5
ENST00000521590.5
ENST00000522911.5
ENST00000523877.1
CDS-3UTR CAA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGTGCTCTGCTGTGGTTTaGCTCCTCCGCGGACTCCTT +
Preference number: 5 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQCSAVV*LLRGLL
Trigger: AAGGAGTCCGCGGAGGAGCAAAACCACAGCAGAGCA...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000518385.5
CDS-3UTR CAA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCATGCTCTGCTGTGGTTTaGCTCCTCCGCGGACTCCTT +
Preference number: 5 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTACSAVV*LLRGLL
Trigger: AAGGAGTCCGCGGAGGAGCAAAACCACAGCAGAGCA...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000518385.5
CDS-3UTR CAA 90 bp CAAACTTCGAAATCCCCTGGCAGCCTTCCAATATCTCTACCTAGACACACACAGACAGGCTCTTTGGTCTaGATTTACAGACACTGTGAA +
Preference number: 5 (lower is better)
Translates to: QTSKSPGSLPISLPRHTQTGSLV*IYRHCE
Trigger: TTCACAGTGTCTGTAAATCAAGACCAAAGAGCCTGT...CTGTGTGTGTCTAGGTAGAGATATTGGAAGGCTGCCAGGGGATTTCGAAGTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CAA 90 bp ACTTCGAAATCCCCTGGCAGCCTTCCAATATCTCTACCTAGACACACACAGGATAGTCTTGTAAGTTATTaGCAAAAGCAGGCGTCTGTC +
Preference number: 5 (lower is better)
Translates to: TSKSPGSLPISLPRHTQDSLVSY*QKQASV
Trigger: GACAGACGCCTGCTTTTGCAAATAACTTACAAGACT...ATCCTGTGTGTGTCTAGGTAGAGATATTGGAAGGCTGCCAGGGGATTTCGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS CCA 90 bp AGCAGGTATCTTGTTCTGTATATTCAGCGTCGTGGTTTCCACTTTTaGAGCAGCACTAGTCAACAGTATCTTTGGAAGTGGTCGAGATGT +
Preference number: 5 (lower is better)
Translates to: SRYLVLYIQRRGFHF*SSTSQQYLWKWSRC
Trigger: ACATCTCGACCACTTCCAAAGATACTGTTGACTAGTGCTGCTCCAAAAGTGGAAACCACGACGCTGAATATACAGAACAAGATACCTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
ENST00000521590.5
ENST00000522911.5
ENST00000523877.1
CDS CCA 90 bp AAGAATATCCTTCTGGACACCATGAGATGCTGTAAACTTCAGGCTTaGGATCCCAAGCAATTCAAGACACTTTCAGAACACAGGCAACAG +
Preference number: 5 (lower is better)
Translates to: KNILLDTMRCCKLQA*DPKQFKTLSEHRQQ
Trigger: CTGTTGCCTGTGTTCTGAAAGTGTCTTGAATTGCTTGGGATCCCAAGCCTGAAGTTTACAGCATCTCATGGTGTCCAGAAGGATATTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000519587.1
CDS-3UTR CAA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGATCTTCAATGGAGCTGTaGTCAAGGTACATGTCTTTA +
Preference number: 5 (lower is better)
Translates to: TATKGIGFGFKGTRREGRSSMEL*SRYMSL
Trigger: TAAAGACATGTACCTTGACAACAGCTCCATTGAAGA...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000519914.5
CDS-3UTR CAA 90 bp TGCTTTGCACAGTTAGAGGTATACCCATTCCTACCCTCTGTAATTGAGGGACACTTTCTTCAGGTGACTTaGTCTGAGCAGGTATCTTGT +
Preference number: 5 (lower is better)
Translates to: CFAQLEVYPFLPSVIEGHFLQVT*SEQVSC
Trigger: ACAAGATACCTGCTCAGACAAAGTCACCTGAAGAAA...GTGTCCCTCAATTACAGAGGGTAGGAATGGGTATACCTCTAACTGTGCAAAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CAA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGACACATTAATTTGCTGTaGCAAATCTGCCCAAAGCTA +
Preference number: 5 (lower is better)
Translates to: TATKGIGFGFKGTRREGRHINLL*QICPKL
Trigger: TAGCTTTGGGCAGATTTGCAACAGCAAATTAATGTG...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CAA 90 bp TGCTTTGCACAGTTAGAGGTATACCCATTCCTACCCTCTGTAATTGAGGGACACTTAACATCTTTGGGTTaGCTGAGGCTTGTCAGTAAC +
Preference number: 5 (lower is better)
Translates to: CFAQLEVYPFLPSVIEGHLTSLG*LRLVSN
Trigger: GTTACTGACAAGCCTCAGCAAACCCAAAGATGTTAA...GTGTCCCTCAATTACAGAGGGTAGGAATGGGTATACCTCTAACTGTGCAAAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CAA 90 bp GCCTTCCAATATCTCTACCTAGACACACACAGGATAATACATTCAGATTTCCTCTCTCTGAAGCTCTTCTaGCTCTGCTGTGGTTTTGCT +
Preference number: 5 (lower is better)
Translates to: AFQYLYLDTHRIIHSDFLSLKLF*LCCGFA
Trigger: AGCAAAACCACAGCAGAGCAAGAAGAGCTTCAGAGA...GAGGAAATCTGAATGTATTATCCTGTGTGTGTCTAGGTAGAGATATTGGAAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CAA 90 bp ACAGCTACAAAAGGCATAGGGTTTGGTTTTAAGGGCACAAGAAGGGAGGGCAGATTTTCCAAAGACAAATaGCACCATGACAGCTACAAA +
Preference number: 5 (lower is better)
Translates to: TATKGIGFGFKGTRREGRFSKDK*HHDSYK
Trigger: TTTGTAGCTGTCATGGTGCAATTTGTCTTTGGAAAA...TCTGCCCTCCCTTCTTGTGCCCTTAAAACCAAACCCTATGCCTTTTGTAGCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR CAA 90 bp CAGTCTTGTAAGTTATTTGCAAAAGCAGGCGTCTGTCTTAATATTGCCATCAGTAATAAATTCGCTGGCTaGAAAGGGAGCTACGGCAGA +
Preference number: 5 (lower is better)
Translates to: QSCKLFAKAGVCLNIAISNKFAG*KGSYGR
Trigger: TCTGCCGTAGCTCCCTTTCAAGCCAGCGAATTTATT...ACTGATGGCAATATTAAGACAGACGCCTGCTTTTGCAAATAACTTACAAGACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CAA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGGAAGTGGTCGAGATGTaGTCAGCTCTGGACTCTCTA +
Preference number: 5 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQEVVEM*SALDSL
Trigger: TAGAGAGTCCAGAGCTGACAACATCTCGACCACTTC...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR CAA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGCTTGGGAGCTATCGGTaGCATTATCCCTTTGACTGG +
Preference number: 5 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQLGSYR*HYPFDW
Trigger: CCAGTCAAAGGGATAATGCAACCGATAGCTCCCAAG...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS-3UTR CAA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCAAATAAATTCGCTGGCTaGAAAGGGAGCTACGGCAGA +
Preference number: 5 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTANKFAG*KGSYGR
Trigger: TCTGCCGTAGCTCCCTTTCAAGCCAGCGAATTTATT...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000518385.5
CDS-3UTR CAA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGGGTTGCATTATCCCTTaGACTGGACATACCTGGCTT +
Preference number: 5 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQGCIIP*TGHTWL
Trigger: AAGCCAGGTATGTCCAGTCAAAGGGATAATGCAACC...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS-3UTR CAA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGTCTCAGTATACACATTaGTATCCTCTTCGGCTGGGT +
Preference number: 5 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQSQYTH*YPLRLG
Trigger: ACCCAGCCGAAGAGGATACAAATGTGTATACTGAGA...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR CAA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCATCTCAGTATACACATTaGTATCCTCTTCGGCTGGGT +
Preference number: 5 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTASQYTH*YPLRLG
Trigger: ACCCAGCCGAAGAGGATACAAATGTGTATACTGAGA...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR CAA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGTTTCTTCAGGTGACTTaGTCTGAGCAGGTATCTTGT +
Preference number: 5 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQFLQVT*SEQVSC
Trigger: ACAAGATACCTGCTCAGACAAAGTCACCTGAAGAAA...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS-3UTR CAA 90 bp TTTTTCTTTTCCTGGCACGGATATTCCCAGCAGTTGTTATTCTATGAATTGAATTCTCAGTATACACATTaGTATCCTCTTCGGCTGGGT +
Preference number: 5 (lower is better)
Translates to: FFFSWHGYSQQLLFYELNSQYTH*YPLRLG
Trigger: ACCCAGCCGAAGAGGATACAAATGTGTATACTGAGA...ATTCAATTCATAGAATAACAACTGCTGGGAATATCCGTGCCAGGAAAAGAAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CAA 90 bp CGGTTAAGCTTCAGTAGACATTTGGAGCACAATTCCAAAGGTAAATCAATCTATATACTGTTAACATCTTaGGGTTTGCTGAGGCTTGTC +
Preference number: 5 (lower is better)
Translates to: RLSFSRHLEHNSKGKSIYILLTS*GLLRLV
Trigger: GACAAGCCTCAGCAAACCCAAAGATGTTAACAGTAT...ATAGATTGATTTACCTTTGGAATTGTGCTCCAAATGTCTACTGAAGCTTAACCG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CAA 90 bp ATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGAACACTGCAAGCTTCAGTAGACATTaGGAGCACAATTCCAAAGGT +
Preference number: 5 (lower is better)
Translates to: IEGFHNIIFCHCYSQNTASFSRH*EHNSKG
Trigger: ACCTTTGGAATTGTGCTCCAAATGTCTACTGAAGCT...TGCAGTGTTCTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CAA 90 bp CAGTCTTGTAAGTTATTTGCAAAAGCAGGCGTCTGTCTTAATATTGCCATCAGTTTTTCCAAAGACAAATaGCACCATGACAGCTACAAA +
Preference number: 5 (lower is better)
Translates to: QSCKLFAKAGVCLNIAISFSKDK*HHDSYK
Trigger: TTTGTAGCTGTCATGGTGCAATTTGTCTTTGGAAAA...ACTGATGGCAATATTAAGACAGACGCCTGCTTTTGCAAATAACTTACAAGACTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CAA 90 bp TTTTTCTTTTCCTGGCACGGATATTCCCAGCAGTTGTTATTCTATGAATTGAATTCTTCAATGGAGCTGTaGTCAAGGTACATGTCTTTA +
Preference number: 5 (lower is better)
Translates to: FFFSWHGYSQQLLFYELNSSMEL*SRYMSL
Trigger: TAAAGACATGTACCTTGACAACAGCTCCATTGAAGA...ATTCAATTCATAGAATAACAACTGCTGGGAATATCCGTGCCAGGAAAAGAAAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS-3UTR CAA 90 bp TCCATGAACATCGAGGGTTTTCATAACATAATATTTTGCCACTGCTATTCACAGTTTTCCAAAGACAAATaGCACCATGACAGCTACAAA +
Preference number: 5 (lower is better)
Translates to: SMNIEGFHNIIFCHCYSQFSKDK*HHDSYK
Trigger: TTTGTAGCTGTCATGGTGCAATTTGTCTTTGGAAAA...CTGTGAATAGCAGTGGCAAAATATTATGTTATGAAAACCCTCGATGTTCATGGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
CDS GCA 72 bp CGCGCACACGAATCCGGAGCAGAGTACCGCAGCGATTaGGGCTCAGGCTCGGGGACTCGGGCTCGGGGCTCG +
Preference number: 6 (lower is better)
Translates to: RAHESGAEYRSD*GSGSGTRARGS
Trigger: CGAGCCCCGAGCCCGAGTCCCCGAGCCTGAGCCGCAATCGCTGCGGTACTCTGCTCCGGATTCGTGTGCGCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000520233.1
CDS CAA 72 bp CCGCGCACACGAATCCGGAGCAGAGTACCGCAGCGATaGCGGCTCAGGCTCGGGGACTCGGGCTCGGGGCTC +
Preference number: 6 (lower is better)
Translates to: PRTRIRSRVPQR*RLRLGDSGSGL
Trigger: GAGCCCCGAGCCCGAGTCCCCGAGCCTGAGCCGCAATCGCTGCGGTACTCTGCTCCGGATTCGTGTGCGCGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000520233.1
CDS CAA 90 bp CGCCGCCCGCAGCTGCGCCCCGGGAACGCGGCGCCCTCTCACTTGTaGGTTTCTGCACTCCCGACACGGAGTTGGTGCTCCGGGAAGGCT +
Preference number: 6 (lower is better)
Translates to: RRPQLRPGNAAPSHL*VSALPTRSWCSGKA
Trigger: AGCCTTCCCGGAGCACCAACTCCGTGTCGGGAGTGCAGAAACCAACAAGTGAGAGGGCGCCGCGTTCCCGGGGCGCAGCTGCGGGCGGCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000520233.1
CDS CAA 90 bp TCCCGCCGCCCGCAGCTGCGCCCCGGGAACGCGGCGCCCTCTCACTaGTTGGTTTCTGCACTCCCGACACGGAGTTGGTGCTCCGGGAAG +
Preference number: 6 (lower is better)
Translates to: SRRPQLRPGNAAPSH*LVSALPTRSWCSGK
Trigger: CTTCCCGGAGCACCAACTCCGTGTCGGGAGTGCAGAAACCAACAAGTGAGAGGGCGCCGCGTTCCCGGGGCGCAGCTGCGGGCGGCGGGA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000520233.1
CDS CAA 90 bp CGCGCGCCGCATATTCCCCAGGGACCGGCTGCTCCCAGCCGCTGCTaGCAACCAGGGCAAAACGAAGCCTCCTGCCCAGCGCTCGGCGCA +
Preference number: 6 (lower is better)
Translates to: RAPHIPQGPAAPSRC*QPGQNEASCPALGA
Trigger: TGCGCCGAGCGCTGGGCAGGAGGCTTCGTTTTGCCCTGGTTGCAAGCAGCGGCTGGGAGCAGCCGGTCCCTGGGGAATATGCGGCGCGCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000520233.1
CDS TCA 72 bp CCGACTCCGCCGACACGCAGGCCACCAAGCCCAAGGTaGGCAGGATCCACGCGCGCCGCATATTCCCCAGGG +
Preference number: 6 (lower is better)
Translates to: PTPPTRRPPSPR*AGSTRAAYSPG
Trigger: CCCTGGGGAATATGCGGCGCGCGTGGATCCTGCTCACCTTGGGCTTGGTGGCCTGCGTGTCGGCGGAGTCGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000518385.5
CDS TCA 72 bp TCGACTCCGCCGACACGCAGGCCACCAAGCCCAAGGTaGGCAGGATCCACGCGCGCCGCATATTCCCCAGGG +
Preference number: 6 (lower is better)
Translates to: STPPTRRPPSPR*AGSTRAAYSPG
Trigger: CCCTGGGGAATATGCGGCGCGCGTGGATCCTGCTCACCTTGGGCTTGGTGGCCTGCGTGTCGGCGGAGTCGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000302190.9
ENST00000520233.1
CDS GCA 72 bp AGCCGCTGCTTGCAACCAGGGCAAAACGAAGCCTCCTaGCCAGCGCTCGGCGCAGCCCGCGCACACGAATCC +
Preference number: 6 (lower is better)
Translates to: SRCLQPGQNEAS*PALGAARAHES
Trigger: GGATTCGTGTGCGCGGGCTGCGCCGAGCGCTGGGCAGGAGGCTTCGTTTTGCCCTGGTTGCAAGCAGCGGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000520233.1
CDS CAA 72 bp CCGCAGCTGCGCCCCGGGAACGCGGCGCCCTCTCACTaGTTGGTTTCTGCACTCCCGACACGGAGTTGGTGC +
Preference number: 6 (lower is better)
Translates to: PQLRPGNAAPSH*LVSALPTRSWC
Trigger: GCACCAACTCCGTGTCGGGAGTGCAGAAACCAACAAGTGAGAGGGCGCCGCGTTCCCGGGGCGCAGCTGCGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000520233.1
CDS GCA 72 bp CCCCGGGAACGCGGCGCCCTCTCACTTGTTGGTTTCTaGACTCCCGACACGGAGTTGGTGCTCCGGGAAGGC +
Preference number: 6 (lower is better)
Translates to: PRERGALSLVGF*TPDTELVLREG
Trigger: GCCTTCCCGGAGCACCAACTCCGTGTCGGGAGTGCAGAAACCAACAAGTGAGAGGGCGCCGCGTTCCCGGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000520233.1
CDS GCA 72 bp GGATCCACGCGCGCCGCATATTCCCCAGGGACCGGCTaGTCCCAGCCGCTGCTTGCAACCAGGGCAAAACGA +
Preference number: 6 (lower is better)
Translates to: GSTRAAYSPGTG*SQPLLATRAKR
Trigger: TCGTTTTGCCCTGGTTGCAAGCAGCGGCTGGGAGCAGCCGGTCCCTGGGGAATATGCGGCGCGCGTGGATCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000520233.1
CDS CCA 72 bp AGCTGCGCCCCGGGAACGCGGCGCCCTCTCACTTGTTaGTTTCTGCACTCCCGACACGGAGTTGGTGCTCCG +
Preference number: 6 (lower is better)
Translates to: SCAPGTRRPLTC*FLHSRHGVGAP
Trigger: CGGAGCACCAACTCCGTGTCGGGAGTGCAGAAACCAACAAGTGAGAGGGCGCCGCGTTCCCGGGGCGCAGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000520233.1
CDS CAA 72 bp CAGCTGCGCCCCGGGAACGCGGCGCCCTCTCACTTGTaGGTTTCTGCACTCCCGACACGGAGTTGGTGCTCC +
Preference number: 6 (lower is better)
Translates to: QLRPGNAAPSHL*VSALPTRSWCS
Trigger: GGAGCACCAACTCCGTGTCGGGAGTGCAGAAACCAACAAGTGAGAGGGCGCCGCGTTCCCGGGGCGCAGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000520233.1
CDS CAA 90 bp CGCGGCGCCCTCTCACTTGTTGGTTTCTGCACTCCCGACACGGAGTaGGTGCTCCGGGAAGGCTGCTCTCTGAAGCTCTTCTTGCTCTGC +
Preference number: 6 (lower is better)
Translates to: RGALSLVGFCTPDTE*VLREGCSLKLFLLC
Trigger: GCAGAGCAAGAAGAGCTTCAGAGAGCAGCCTTCCCGGAGCACCAACTCCGTGTCGGGAGTGCAGAAACCAACAAGTGAGAGGGCGCCGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000520233.1
CDS CAA 90 bp GACACGGAGTTGGTGCTCCGGGAAGGCTGCTCTCTGAAGCTCTTCTaGCTCTGCTGTGGTTTTGCTCCTCCGCGGACTCCTTTCCCGTGC +
Preference number: 6 (lower is better)
Translates to: DTELVLREGCSLKLF*LCCGFAPPRTPFPC
Trigger: GCACGGGAAAGGAGTCCGCGGAGGAGCAAAACCACAGCAGAGCAAGAAGAGCTTCAGAGAGCAGCCTTCCCGGAGCACCAACTCCGTGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519587.1
ENST00000520233.1
CDS CAA 72 bp TTGGTGCTCCGGGAAGGCTGCTCTCTGAAGCTCTTCTaGCTCTGCTGTGGTTTTGCTCCTCCGCGGACTCCT +
Preference number: 6 (lower is better)
Translates to: LVLREGCSLKLF*LCCGFAPPRTP
Trigger: AGGAGTCCGCGGAGGAGCAAAACCACAGCAGAGCAAGAAGAGCTTCAGAGAGCAGCCTTCCCGGAGCACCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519587.1
ENST00000520233.1
CDS GCA 72 bp TGCACTCCCGACACGGAGTTGGTGCTCCGGGAAGGCTaGTCTCTGAAGCTCTTCTTGCTCTGCTGTGGTTTT +
Preference number: 6 (lower is better)
Translates to: CTPDTELVLREG*SLKLFLLCCGF
Trigger: AAAACCACAGCAGAGCAAGAAGAGCTTCAGAGAGCAGCCTTCCCGGAGCACCAACTCCGTGTCGGGAGTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519587.1
ENST00000520233.1
CDS CAA 72 bp CTCTCACTTGTTGGTTTCTGCACTCCCGACACGGAGTaGGTGCTCCGGGAAGGCTGCTCTCTGAAGCTCTTC +
Preference number: 6 (lower is better)
Translates to: LSLVGFCTPDTE*VLREGCSLKLF
Trigger: GAAGAGCTTCAGAGAGCAGCCTTCCCGGAGCACCAACTCCGTGTCGGGAGTGCAGAAACCAACAAGTGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000520233.1
CDS CAA 72 bp CTCACCTTTGTTGGTTTCTGCACTCCCGACACGGAGTaGGTGCTCCGGGAAGGCTGCTCTCTGAAGCTCTTC +
Preference number: 6 (lower is better)
Translates to: LTFVGFCTPDTE*VLREGCSLKLF
Trigger: GAAGAGCTTCAGAGAGCAGCCTTCCCGGAGCACCAACTCCGTGTCGGGAGTGCAGAAACCAACAAAGGTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000519587.1
CDS CAA 90 bp CATGTAGCTCTCACCTTTGTTGGTTTCTGCACTCCCGACACGGAGTaGGTGCTCCGGGAAGGCTGCTCTCTGAAGCTCTTCTTGCTCTGC +
Preference number: 6 (lower is better)
Translates to: HVALTFVGFCTPDTE*VLREGCSLKLFLLC
Trigger: GCAGAGCAAGAAGAGCTTCAGAGAGCAGCCTTCCCGGAGCACCAACTCCGTGTCGGGAGTGCAGAAACCAACAAAGGTGAGAGCTACATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000519587.1
CDS CAA 90 bp CGTGCCGAGGTTCAGTTTCTGGTTTTAAGGAATAAATTCGCTGGCTaGAAAGGGAGCTACGGCAGAAGTTTAGGGGCAGAGCGGCGGGAG +
Preference number: 6 (lower is better)
Translates to: RAEVQFLVLRNKFAG*KGSYGRSLGAERRE
Trigger: CTCCCGCCGCTCTGCCCCTAAACTTCTGCCGTAGCTCCCTTTCAAGCCAGCGAATTTATTCCTTAAAACCAGAAACTGAACCTCGGCACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519587.1
ENST00000520233.1
CDS TCA 72 bp AAACATGTCCACCCCTCAGTGGCAACAAGCAACAGCTaGGGATATGGAGGCTTGGGAGCTATCGGTTGCATT +
Preference number: 6 (lower is better)
Translates to: KHVHPSVATSNS*GYGGLGAIGCI
Trigger: AATGCAACCGATAGCTCCCAAGCCTCCATATCCTCAGCTGTTGCTTGTTGCCACTGAGGGGTGGACATGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS CAA 90 bp GGCAACAAGCAACAGCTGAGGATATGGAGGCTTGGGAGCTATCGGTaGCATTATCCCTTTGACTGGACATACCTGGCTTTGGCAAATGCT +
Preference number: 6 (lower is better)
Translates to: GNKQQLRIWRLGSYR*HYPFDWTYLALANA
Trigger: AGCATTTGCCAAAGCCAGGTATGTCCAGTCAAAGGGATAATGCAACCGATAGCTCCCAAGCCTCCATATCCTCAGCTGTTGCTTGTTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS TCA 72 bp ATGGAGGCTTGGGAGCTATCGGTTGCATTATCCCTTTaGCTGGACATACCTGGCTTTGGCAAATGCTCTGGA +
Preference number: 6 (lower is better)
Translates to: MEAWELSVALSL*LDIPGFGKCSG
Trigger: TCCAGAGCATTTGCCAAAGCCAGGTATGTCCAGTCAAAGGGATAATGCAACCGATAGCTCCCAAGCCTCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS CAA 72 bp TATGGAGGCTTGGGAGCTATCGGTTGCATTATCCCTTaGACTGGACATACCTGGCTTTGGCAAATGCTCTGG +
Preference number: 6 (lower is better)
Translates to: YGGLGAIGCIIP*TGHTWLWQMLW
Trigger: CCAGAGCATTTGCCAAAGCCAGGTATGTCCAGTCAAAGGGATAATGCAACCGATAGCTCCCAAGCCTCCATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS CAA 72 bp CAACAGCTGAGGATATGGAGGCTTGGGAGCTATCGGTaGCATTATCCCTTTGACTGGACATACCTGGCTTTG +
Preference number: 6 (lower is better)
Translates to: QQLRIWRLGSYR*HYPFDWTYLAL
Trigger: CAAAGCCAGGTATGTCCAGTCAAAGGGATAATGCAACCGATAGCTCCCAAGCCTCCATATCCTCAGCTGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS TCA 72 bp GATGCCTCTTATAGAGTGGGGCTCTTCTTATACCACTaGGAAAGCGAGTTCCTTGAAGATGCCCAAGACCCA +
Preference number: 6 (lower is better)
Translates to: DASYRVGLFLYH*ESEFLEDAQDP
Trigger: TGGGTCTTGGGCATCTTCAAGGAACTCGCTTTCTCAGTGGTATAAGAAGAGCCCCACTCTATAAGAGGCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000523877.1
CDS CCA 72 bp CTCCTTAGTAGGTGCCTTCTGATAAGCAGCACTGGATaGTTTGCGTTCTCCAAGGTCATAGCTTCCTTCATC +
Preference number: 6 (lower is better)
Translates to: LLSRCLLISSTG*FAFSKVIASFI
Trigger: GATGAAGGAAGCTATGACCTTGGAGAACGCAAACCATCCAGTGCTGCTTATCAGAAGGCACCTACTAAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
ENST00000522911.5
CDS CCA 72 bp AGGCTTGGGAGCTATCGGTTGCATTATCCCTTTGACTaGACATACCTGGCTTTGGCAAATGCTCTGGAACAA +
Preference number: 6 (lower is better)
Translates to: RLGSYRLHYPFD*TYLALANALEQ
Trigger: TTGTTCCAGAGCATTTGCCAAAGCCAGGTATGTCCAGTCAAAGGGATAATGCAACCGATAGCTCCCAAGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS CCA 72 bp TGTAAGATGCCAAATGAAAACATGTCCACCCCTCAGTaGCAACAAGCAACAGCTGAGGATATGGAGGCTTGG +
Preference number: 6 (lower is better)
Translates to: CKMPNENMSTPQ*QQATAEDMEAW
Trigger: CCAAGCCTCCATATCCTCAGCTGTTGCTTGTTGCCACTGAGGGGTGGACATGTTTTCATTTGGCATCTTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS CCA 72 bp GATGTTGGCTGTTCCTGTTGGATGCCTCTTATAGAGTaGGGCTCTTCTTATACCACTGAGAAAGCGAGTTCC +
Preference number: 6 (lower is better)
Translates to: DVGCSCWMPLIE*GSSYTTEKASS
Trigger: GGAACTCGCTTTCTCAGTGGTATAAGAAGAGCCCCACTCTATAAGAGGCATCCAACAGGAACAGCCAACATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000523877.1
CDS CCA 72 bp TCTTTGGAAGGTGCCACTGATGTTGGCTGTTCCTGTTaGATGCCTCTTATAGAGTGGGGCTCTTCTTATACC +
Preference number: 6 (lower is better)
Translates to: SLEGATDVGCSC*MPLIEWGSSYT
Trigger: GGTATAAGAAGAGCCCCACTCTATAAGAGGCATCCAACAGGAACAGCCAACATCAGTGGCACCTTCCAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000523877.1
CDS CCA 72 bp TTCCACTTTTGGAGCAGCACTAGTCAACAGTATCTTTaGAAGTGGTCGAGATGTTGTCAGCTCTGGACTCTC +
Preference number: 6 (lower is better)
Translates to: FHFWSSTSQQYL*KWSRCCQLWTL
Trigger: GAGAGTCCAGAGCTGACAACATCTCGACCACTTCCAAAGATACTGTTGACTAGTGCTGCTCCAAAAGTGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
ENST00000521590.5
ENST00000522911.5
ENST00000523877.1
CDS GCA 72 bp AGCTCAGCAAAGAATATCCTTCTGGACACCATGAGATaGTGTAAACTTCAGGCTTGGGATCCCAAGCAATTC +
Preference number: 6 (lower is better)
Translates to: SSAKNILLDTMR*CKLQAWDPKQF
Trigger: GAATTGCTTGGGATCCCAAGCCTGAAGTTTACAGCATCTCATGGTGTCCAGAAGGATATTCTTTGCTGAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000519587.1
CDS CCA 72 bp TTTTGGAGCAGCACTAGTCAACAGTATCTTTGGAAGTaGTCGAGATGTTGTCAGCTCTGGACTCTCTACATC +
Preference number: 6 (lower is better)
Translates to: FWSSTSQQYLWK*SRCCQLWTLYI
Trigger: GATGTAGAGAGTCCAGAGCTGACAACATCTCGACCACTTCCAAAGATACTGTTGACTAGTGCTGCTCCAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
ENST00000521590.5
ENST00000522911.5
ENST00000523877.1
CDS CCA 72 bp CTTCTGGACACCATGAGATGCTGTAAACTTCAGGCTTaGGATCCCAAGCAATTCAAGACACTTTCAGAACAC +
Preference number: 6 (lower is better)
Translates to: LLDTMRCCKLQA*DPKQFKTLSEH
Trigger: GTGTTCTGAAAGTGTCTTGAATTGCTTGGGATCCCAAGCCTGAAGTTTACAGCATCTCATGGTGTCCAGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000519587.1
CDS CAA 90 bp TCGTCATCAATAGGATACACTCCTGAAGCTTCTTCAATGGAGCTGTaGTCAAGGTACATGTCTTTATCAGATGTCAGCTCTGCTCTCGAC +
Preference number: 6 (lower is better)
Translates to: SSSIGYTPEASSMEL*SRYMSLSDVSSALD
Trigger: GTCGAGAGCAGAGCTGACATCTGATAAAGACATGTACCTTGACAACAGCTCCATTGAAGAAGCTTCAGGAGTGTATCCTATTGATGACGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302190.9
CDS CAA 90 bp TCGTCATCAATAGGATACACTCCTGAAGCTTCTTCAATGGAGCTGTaGTCAAGGTACATGTCTTTATCAGATGTCAGCTCTGCTCTCTCC +
Preference number: 6 (lower is better)
Translates to: SSSIGYTPEASSMEL*SRYMSLSDVSSALS
Trigger: GGAGAGAGCAGAGCTGACATCTGATAAAGACATGTACCTTGACAACAGCTCCATTGAAGAAGCTTCAGGAGTGTATCCTATTGATGACGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS CCA 72 bp CTTGTTCTGTATATTCAGCGTCGTGGTTTCCACTTTTaGAGCAGCACTAGTCAACAGTATCTTTGGAAGTGG +
Preference number: 6 (lower is better)
Translates to: LVLYIQRRGFHF*SSTSQQYLWKW
Trigger: CCACTTCCAAAGATACTGTTGACTAGTGCTGCTCCAAAAGTGGAAACCACGACGCTGAATATACAGAACAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
ENST00000521590.5
ENST00000522911.5
ENST00000523877.1
CDS CAA 90 bp TCGTCATCAATAGGATACACTCCTGAAGCTTCTTCAATGGAGCTGTaGTCAAGGTACATGTCTTTATCAGATGTCAGCTCTGCTCTTTGG +
Preference number: 6 (lower is better)
Translates to: SSSIGYTPEASSMEL*SRYMSLSDVSSALW
Trigger: CCAAAGAGCAGAGCTGACATCTGATAAAGACATGTACCTTGACAACAGCTCCATTGAAGAAGCTTCAGGAGTGTATCCTATTGATGACGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000523877.1
CDS TCA 72 bp AGAAGCGTAGTCATCGTCATCAATAGGATACACTCCTaGAGCTTCTTCAATGGAGCTGTTGTCAAGGTACAT +
Preference number: 6 (lower is better)
Translates to: RSVVIVINRIHS*SFFNGAVVKVH
Trigger: ATGTACCTTGACAACAGCTCCATTGAAGAAGCTTCAGGAGTGTATCCTATTGATGACGATGACTACGCTTCT
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000302190.9
ENST00000519914.5
ENST00000521590.5
ENST00000522911.5
ENST00000523877.1
CDS CCA 72 bp CTCTGCTCTCTCCAGACAGAACCTCTGCCCACAGAGTaGAGTTTATTATTTAATTGGTATAAGATGAGTCTG +
Preference number: 6 (lower is better)
Translates to: LCSLQTEPLPTE*SLLFNWYKMSL
Trigger: CAGACTCATCTTATACCAATTAAATAATAAACTCCACTCTGTGGGCAGAGGTTCTGTCTGGAGAGAGCAGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000519914.5
CDS CAA 90 bp TCGTCATCAATAGGATACACTCCTGAAGCTTCTTCAATGGAGCTGTaGTCAAGGTACATGTCTTTATCAGATGTCAGCTCTGCTCTTTGT +
Preference number: 6 (lower is better)
Translates to: SSSIGYTPEASSMEL*SRYMSLSDVSSALC
Trigger: ACAAAGAGCAGAGCTGACATCTGATAAAGACATGTACCTTGACAACAGCTCCATTGAAGAAGCTTCAGGAGTGTATCCTATTGATGACGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000522911.5
CDS CAA 90 bp TCGTCATCAATAGGATACACTCCTGAAGCTTCTTCAATGGAGCTGTaGTCAAGGTACATGTCTTTATCAGATGTCAGCTCTGCTCTTTCT +
Preference number: 6 (lower is better)
Translates to: SSSIGYTPEASSMEL*SRYMSLSDVSSALS
Trigger: AGAAAGAGCAGAGCTGACATCTGATAAAGACATGTACCTTGACAACAGCTCCATTGAAGAAGCTTCAGGAGTGTATCCTATTGATGACGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000521590.5
CDS TCA 72 bp ATTTGTATCCTCTTCGGCTGGGTCCATTTTCCTTTCTaGGTCAGAGAGGTGAACTTTCTCTTTATCAGTTTC +
Preference number: 6 (lower is better)
Translates to: ICILFGWVHFPF*VREVNFLFISF
Trigger: GAAACTGATAAAGAGAAAGTTCACCTCTCTGACTCAGAAAGGAAAATGGACCCAGCCGAAGAGGATACAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000302190.9
ENST00000518385.5
ENST00000519914.5
ENST00000521590.5
ENST00000522911.5
ENST00000523877.1
CDS CAA 72 bp ATAGGATACACTCCTGAAGCTTCTTCAATGGAGCTGTaGTCAAGGTACATGTCTTTATCAGATGTCAGCTCT +
Preference number: 6 (lower is better)
Translates to: IGYTPEASSMEL*SRYMSLSDVSS
Trigger: AGAGCTGACATCTGATAAAGACATGTACCTTGACAACAGCTCCATTGAAGAAGCTTCAGGAGTGTATCCTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000302190.9
ENST00000519914.5
ENST00000521590.5
ENST00000522911.5
ENST00000523877.1