Pregenerated sensors for SCT (Homo sapiens)

Ensembl gene IDs: ENSG00000070031

Ensembl transcript IDs: ENST00000176195.4, ENST00000622382.2

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GCAGGATGGGCATGTTGGACCCTGACGGGCAGAGCAGACCCGCGCTaGGCCTGGTCCAGGCCATGCTGTTCTCTGCGTCCTGCTCGCTGC	+
Preference number: 5 (lower is better) Translates to: AGWACWTLTGRADPR*AWSRPCCSLRPARC Trigger: GCAGCGAGCAGGACGCAGAGAACAGCATGGCCTGGACCAGGCTCAGCGCGGGTCTGCTCTGCCCGTCAGGGTCCAACATGCCCATCCTGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000176195.4 ENST00000622382.2
CDS TCA 72 bp	GGGCATCCAGGCCTGCAGGATGGGCATGTTGGACCCTaGCGGGCAGAGCAGACCCGCGCTGAGCCTGGTCCA	+
Preference number: 6 (lower is better) Translates to: GHPGLQDGHVGP*RAEQTRAEPGP Trigger: TGGACCAGGCTCAGCGCGGGTCTGCTCTGCCCGTCAGGGTCCAACATGCCCATCCTGCAGGCCTGGATGCCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000176195.4 ENST00000622382.2
CDS CCA 72 bp	ACCAGGTCCCGTCCAGGGGCATCCAGGCCTGCAGGATaGGCATGTTGGACCCTGACGGGCAGAGCAGACCCG	+
Preference number: 6 (lower is better) Translates to: TRSRPGASRPAG*ACWTLTGRADP Trigger: CGGGTCTGCTCTGCCCGTCAGGGTCCAACATGCCCATCCTGCAGGCCTGGATGCCCCTGGACGGGACCTGGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000176195.4 ENST00000622382.2
CDS TCA 72 bp	GCATGTTGGACCCTGACGGGCAGAGCAGACCCGCGCTaGGCCTGGTCCAGGCCATGCTGTTCTCTGCGTCCT	+
Preference number: 6 (lower is better) Translates to: ACWTLTGRADPR*AWSRPCCSLRP Trigger: AGGACGCAGAGAACAGCATGGCCTGGACCAGGCTCAGCGCGGGTCTGCTCTGCCCGTCAGGGTCCAACATGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000176195.4 ENST00000622382.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu