Pregenerated sensors for SCD (Homo sapiens)
Ensembl gene IDs: ENSG00000099194Ensembl transcript IDs: ENST00000370355.3
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGAACTGTAATGAGCAGCTCATGGAATACTCAAAATTCTATGAGCTaGTGTTTTTACCAATTCTGGAAACACCCAACTTCAAGACTTCTT | + |
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Preference number: 1 (lower is better) Translates to: RTVMSSSWNTQNSMS*CFYQFWKHPTSRLL Trigger: AAGAAGTCTTGAAGTTGGGTGTTTCCAGAATTGGTAAAAACAGCAGCTCATAGAATTTTGAGTATTCCATGAGCTGCTCATTACAGTTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000370355.3 |
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| 3UTR-3UTR CCA 90 bp | AGCATTAGTCATGCCTCAAAACTGCCCTTTGAGGTAGGTCAGTATTATTATCCCGCACAGGGGTGTAGGTaGAGACACTGCGGAGGCCAC | + |
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Preference number: 2 (lower is better) Translates to: SISHASKLPFEVGQYYYPAQGCR*RHCGGH Trigger: GTGGCCTCCGCAGTGTCTCCACCTACACCCCTGTGC...GGGATAATAATACTGACCTACCTCAAAGGGCAGTTTTGAGGCATGACTAATGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000370355.3 |
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| 3UTR-3UTR CCA 90 bp | AGCATTAGTCATGCCTCAAAACTGCCCTTTGAGGTAGGTCAGTATTATTATCCCAAGTCAGTGGCACAGTaGTTGGAGAGGCCCTGGCCT | + |
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Preference number: 2 (lower is better) Translates to: SISHASKLPFEVGQYYYPKSVAQ*LERPWP Trigger: AGGCCAGGGCCTCTCCAACCACTGTGCCACTGACTT...GGGATAATAATACTGACCTACCTCAAAGGGCAGTTTTGAGGCATGACTAATGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000370355.3 |
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| 3UTR-3UTR CCA 90 bp | AAATGCTTTCTAAAAAGCATTAGTCATGCCTCAAAACTGCCCTTTGAGGTAGGTCAGTGGCACAGTGGTTaGAGAGGCCCTGGCCTTAAC | + |
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Preference number: 2 (lower is better) Translates to: KCFLKSISHASKLPFEVGQWHSG*RGPGLN Trigger: GTTAAGGCCAGGGCCTCTCCAACCACTGTGCCACTG...ACCTACCTCAAAGGGCAGTTTTGAGGCATGACTAATGCTTTTTAGAAAGCATTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000370355.3 |
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| 3UTR-3UTR TCA 90 bp | TTCTATGAGCTGCTGTTTTTACCAATTCTGGAAACACCCAACTTCAAGACTTCTAGGCAGCTGTATGTCTaGTCATGGCGAGAGGTTCCT | + |
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Preference number: 2 (lower is better) Translates to: FYELLFLPILETPNFKTSRQLYV*SWREVP Trigger: AGGAACCTCTCGCCATGATCAGACATACAGCTGCCT...AGAAGTCTTGAAGTTGGGTGTTTCCAGAATTGGTAAAAACAGCAGCTCATAGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000370355.3 |
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| 3UTR-3UTR TCA 90 bp | AAATGCTTTCTAAAAAGCATTAGTCATGCCTCAAAACTGCCCTTTGAGGTAGGTCACCTTATAGTTAAGTaGCTTGCCCAGGGTCACACA | + |
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Preference number: 2 (lower is better) Translates to: KCFLKSISHASKLPFEVGHLIVK*LAQGHT Trigger: TGTGTGACCCTGGGCAAGTCACTTAACTATAAGGTG...ACCTACCTCAAAGGGCAGTTTTGAGGCATGACTAATGCTTTTTAGAAAGCATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000370355.3 |
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| 3UTR-3UTR CCA 90 bp | AAATGCTTTCTAAAAAGCATTAGTCATGCCTCAAAACTGCCCTTTGAGGTAGGTGTAATGAGCAGCTCATaGAATACTCAAAATTCTATG | + |
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Preference number: 2 (lower is better) Translates to: KCFLKSISHASKLPFEVGVMSSS*NTQNSM Trigger: CATAGAATTTTGAGTATTCCATGAGCTGCTCATTAC...ACCTACCTCAAAGGGCAGTTTTGAGGCATGACTAATGCTTTTTAGAAAGCATTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000370355.3 |
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| 3UTR-3UTR CAA 90 bp | AGCATTAGTCATGCCTCAAAACTGCCCTTTGAGGTAGGTCAGTATTATTATCCCCAGACTTCTATACTATaGTCTGCCCTAGGCTGTAGG | + |
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Preference number: 3 (lower is better) Translates to: SISHASKLPFEVGQYYYPQTSIL*SALGCR Trigger: CCTACAGCCTAGGGCAGACAATAGTATAGAAGTCTG...GGGATAATAATACTGACCTACCTCAAAGGGCAGTTTTGAGGCATGACTAATGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000370355.3 |
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| 3UTR GCA 72 bp | ATGAGCAGCTCATGGAATACTCAAAATTCTATGAGCTaGTGTTTTTACCAATTCTGGAAACACCCAACTTCA | + |
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Preference number: 3 (lower is better) Translates to: MSSSWNTQNSMS*CFYQFWKHPTS Trigger: TGAAGTTGGGTGTTTCCAGAATTGGTAAAAACAGCAGCTCATAGAATTTTGAGTATTCCATGAGCTGCTCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000370355.3 |
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| 3UTR CCA 72 bp | GAGCAGAAAGAGGAAAGAACTGTAATGAGCAGCTCATaGAATACTCAAAATTCTATGAGCTGCTGTTTTTAC | + |
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Preference number: 3 (lower is better) Translates to: EQKEERTVMSSS*NTQNSMSCCFY Trigger: GTAAAAACAGCAGCTCATAGAATTTTGAGTATTCCATGAGCTGCTCATTACAGTTCTTTCCTCTTTCTGCTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000370355.3 |
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| CDS-3UTR TCA 90 bp | TTCTATGAGCTGCTGTTTTTACCAATTCTGGAAACACCCAACTTCAAGACTTCTCACTTTCCAGGGGGCTaGGGCTCCGGAGCGGAGTTC | + |
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Preference number: 4 (lower is better) Translates to: FYELLFLPILETPNFKTSHFPGG*GSGAEF Trigger: GAACTCCGCTCCGGAGCCTCAGCCCCCTGGAAAGTG...AGAAGTCTTGAAGTTGGGTGTTTCCAGAATTGGTAAAAACAGCAGCTCATAGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000370355.3 |
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| CDS-3UTR CCA 90 bp | AAATGCTTTCTAAAAAGCATTAGTCATGCCTCAAAACTGCCCTTTGAGGTAGGTGCACAGGGGTGTAGGTaGAGACACTGCGGAGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: KCFLKSISHASKLPFEVGAQGCR*RHCGGH Trigger: GTGGCCTCCGCAGTGTCTCCACCTACACCCCTGTGC...ACCTACCTCAAAGGGCAGTTTTGAGGCATGACTAATGCTTTTTAGAAAGCATTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000370355.3 |
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| CDS-3UTR CCA 90 bp | AAATGCTTTCTAAAAAGCATTAGTCATGCCTCAAAACTGCCCTTTGAGGTAGGTCTGTGGCTGGCCCACTaGCTCAACATGAGCGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: KCFLKSISHASKLPFEVGLWLAH*LNMSAW Trigger: CCAAGCGCTCATGTTGAGCCAGTGGGCCAGCCACAG...ACCTACCTCAAAGGGCAGTTTTGAGGCATGACTAATGCTTTTTAGAAAGCATTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000370355.3 |
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| CDS-3UTR CCA 90 bp | TTCTATGAGCTGCTGTTTTTACCAATTCTGGAAACACCCAACTTCAAGACTTCTCAGTGGCACAGTGGTTaGAGAGGCCCTGGCCTTAAC | + |
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Preference number: 4 (lower is better) Translates to: FYELLFLPILETPNFKTSQWHSG*RGPGLN Trigger: GTTAAGGCCAGGGCCTCTCCAACCACTGTGCCACTG...AGAAGTCTTGAAGTTGGGTGTTTCCAGAATTGGTAAAAACAGCAGCTCATAGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000370355.3 |
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| CDS-3UTR GCA 90 bp | AGCATTAGTCATGCCTCAAAACTGCCCTTTGAGGTAGGTCAGTATTATTATCCCTTGGATGTTTGGAAATaGCACAGCCATCTTATTACT | + |
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Preference number: 4 (lower is better) Translates to: SISHASKLPFEVGQYYYPLDVWK*HSHLIT Trigger: AGTAATAAGATGGCTGTGGCATTTCCAAACATCCAA...GGGATAATAATACTGACCTACCTCAAAGGGCAGTTTTGAGGCATGACTAATGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000370355.3 |
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| CDS-3UTR CCA 90 bp | AGCATTAGTCATGCCTCAAAACTGCCCTTTGAGGTAGGTCAGTATTATTATCCCTGTTTTTACCAATTCTaGAAACACCCAACTTCAAGA | + |
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Preference number: 4 (lower is better) Translates to: SISHASKLPFEVGQYYYPCFYQF*KHPTSR Trigger: TCTTGAAGTTGGGTGTTTCCAGAATTGGTAAAAACA...GGGATAATAATACTGACCTACCTCAAAGGGCAGTTTTGAGGCATGACTAATGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000370355.3 |
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| CDS-3UTR CCA 90 bp | AGCATTAGTCATGCCTCAAAACTGCCCTTTGAGGTAGGTCAGTATTATTATCCCGTAATGAGCAGCTCATaGAATACTCAAAATTCTATG | + |
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Preference number: 4 (lower is better) Translates to: SISHASKLPFEVGQYYYPVMSSS*NTQNSM Trigger: CATAGAATTTTGAGTATTCCATGAGCTGCTCATTAC...GGGATAATAATACTGACCTACCTCAAAGGGCAGTTTTGAGGCATGACTAATGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000370355.3 |
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| CDS-3UTR CAA 90 bp | AAATGCTTTCTAAAAAGCATTAGTCATGCCTCAAAACTGCCCTTTGAGGTAGGTCAGACTTCTATACTATaGTCTGCCCTAGGCTGTAGG | + |
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Preference number: 5 (lower is better) Translates to: KCFLKSISHASKLPFEVGQTSIL*SALGCR Trigger: CCTACAGCCTAGGGCAGACAATAGTATAGAAGTCTG...ACCTACCTCAAAGGGCAGTTTTGAGGCATGACTAATGCTTTTTAGAAAGCATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000370355.3 |
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