Pregenerated sensors for SCAT8 (Homo sapiens)
Ensembl gene IDs: ENSG00000236345Ensembl transcript IDs: ENST00000429530.1
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGCTGTAATTCCAGCTACTCGGGAGGCAGAGGCAGGAGAATCATTTaGACTCGAGAAGAGGAGGTTGCAGTGAGCCAAGACCACACCACT | + |
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Preference number: 5 (lower is better) Translates to: GCNSSYSGGRGRRII*TREEEVAVSQDHTT Trigger: AGTGGTGTGGTCTTGGCTCACTGCAACCTCCTCTTCTCGAGTTCAAATGATTCTCCTGCCTCTGCCTCCCGAGTAGCTGGAATTACAGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS CCA 90 bp | ATCAGATTCCAGGCAGCATGCTCACATCCTTTCCCTGACAGCCTCTaGAGTGCTGAACAATTCCAGTCAAGAAGCAACCTGTCATTGGCT | + |
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Preference number: 5 (lower is better) Translates to: IRFQAACSHPFPDSL*SAEQFQSRSNLSLA Trigger: AGCCAATGACAGGTTGCTTCTTGACTGGAATTGTTCAGCACTCCAGAGGCTGTCAGGGAAAGGATGTGAGCATGCTGCCTGGAATCTGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS CCA 90 bp | TCTTTCTCCCCTGTTTTGCTACCTACAGCACATGGCCCTTCATCATaGAGTTCAGGGACAGGAAAGGACAGGAGATTTCTTTCTTCACTG | + |
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Preference number: 5 (lower is better) Translates to: SFSPVLLPTAHGPSS*SSGTGKDRRFLSSL Trigger: CAGTGAAGAAAGAAATCTCCTGTCCTTTCCTGTCCCTGAACTCCATGATGAAGGGCCATGTGCTGTAGGTAGCAAAACAGGGGAGAAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS TCA 90 bp | GCTCTCCAAGTTGTGTTTCTAAAACCCTTCCCTCTTGATTTGAGGTaGAAGGGTGAGGGCTATAAGCCTTTTATACTCTCAATAAGGGTG | + |
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Preference number: 5 (lower is better) Translates to: ALQVVFLKPFPLDLR*KGEGYKPFILSIRV Trigger: CACCCTTATTGAGAGTATAAAAGGCTTATAGCCCTCACCCTTTCACCTCAAATCAAGAGGGAAGGGTTTTAGAAACACAACTTGGAGAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS GCA 90 bp | CTTAGTAATTCGGTTTTCCATTTTTATATGATAGGTAAATCTATCTaGATTAAATTTCATGCTTTCATGTGGCCAGGTGTGGTGGCTCAT | + |
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Preference number: 5 (lower is better) Translates to: LSNSVFHFYMIGKSI*IKFHAFMWPGVVAH Trigger: ATGAGCCACCACACCTGGCCACATGAAAGCATGAAATTTAATGCAGATAGATTTACCTATCATATAAAAATGGAAAACCGAATTACTAAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS GCA 72 bp | GTCCTACAGCTGAGCCACATCAGATTCCAGGCAGCATaGTCACATCCTTTCCCTGACAGCCTCTGGAGTGCT | + |
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Preference number: 6 (lower is better) Translates to: VLQLSHIRFQAA*SHPFPDSLWSA Trigger: AGCACTCCAGAGGCTGTCAGGGAAAGGATGTGAGCATGCTGCCTGGAATCTGATGTGGCTCAGCTGTAGGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS TCA 72 bp | TCCAGCTACTCGGGAGGCAGAGGCAGGAGAATCATTTaGACTCGAGAAGAGGAGGTTGCAGTGAGCCAAGAC | + |
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Preference number: 6 (lower is better) Translates to: SSYSGGRGRRII*TREEEVAVSQD Trigger: GTCTTGGCTCACTGCAACCTCCTCTTCTCGAGTTCAAATGATTCTCCTGCCTCTGCCTCCCGAGTAGCTGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS CCA 72 bp | CAGGCAGCATGCTCACATCCTTTCCCTGACAGCCTCTaGAGTGCTGAACAATTCCAGTCAAGAAGCAACCTG | + |
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Preference number: 6 (lower is better) Translates to: QAACSHPFPDSL*SAEQFQSRSNL Trigger: CAGGTTGCTTCTTGACTGGAATTGTTCAGCACTCCAGAGGCTGTCAGGGAAAGGATGTGAGCATGCTGCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS CCA 72 bp | CCATTCCAGCTGGTTGTTTGCTCCTTCCCCAACCTCTaGCATCTCATAGCATCTTCAGCTTTCCTTGCTGAG | + |
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Preference number: 6 (lower is better) Translates to: PFQLVVCSFPNL*HLIASSAFLAE Trigger: CTCAGCAAGGAAAGCTGAAGATGCTATGAGATGCCAGAGGTTGGGGAAGGAGCAAACAACCAGCTGGAATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS CCA 72 bp | TCTGGGTTTGGCATTCAGTCATCCATCCTTGTCTTGTaGAACAGTTTCACGGATGCTTTGGAGACCCCATGG | + |
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Preference number: 6 (lower is better) Translates to: SGFGIQSSILVL*NSFTDALETPW Trigger: CCATGGGGTCTCCAAAGCATCCGTGAAACTGTTCCACAAGACAAGGATGGATGACTGAATGCCAAACCCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS CAA 72 bp | CTCTCTGGGTTTGGCATTCAGTCATCCATCCTTGTCTaGTGGAACAGTTTCACGGATGCTTTGGAGACCCCA | + |
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Preference number: 6 (lower is better) Translates to: LSGFGIQSSILV*WNSFTDALETP Trigger: TGGGGTCTCCAAAGCATCCGTGAAACTGTTCCACAAGACAAGGATGGATGACTGAATGCCAAACCCAGAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS GCA 72 bp | GTCATCCATCCTTGTCTTGTGGAACAGTTTCACGGATaGTTTGGAGACCCCATGGCTGGAATTCTTCCACTT | + |
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Preference number: 6 (lower is better) Translates to: VIHPCLVEQFHG*FGDPMAGILPL Trigger: AAGTGGAAGAATTCCAGCCATGGGGTCTCCAAAGCATCCGTGAAACTGTTCCACAAGACAAGGATGGATGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS CCA 72 bp | CCATCCTTGTCTTGTGGAACAGTTTCACGGATGCTTTaGAGACCCCATGGCTGGAATTCTTCCACTTGCAAT | + |
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Preference number: 6 (lower is better) Translates to: PSLSCGTVSRML*RPHGWNSSTCN Trigger: ATTGCAAGTGGAAGAATTCCAGCCATGGGGTCTCCAAAGCATCCGTGAAACTGTTCCACAAGACAAGGATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS CCA 72 bp | CCTGTTTTGCTACCTACAGCACATGGCCCTTCATCATaGAGTTCAGGGACAGGAAAGGACAGGAGATTTCTT | + |
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Preference number: 6 (lower is better) Translates to: PVLLPTAHGPSS*SSGTGKDRRFL Trigger: AAGAAATCTCCTGTCCTTTCCTGTCCCTGAACTCCATGATGAAGGGCCATGTGCTGTAGGTAGCAAAACAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS CAA 72 bp | TCCATCCTTGTCTTGTGGAACAGTTTCACGGATGCTTaGGAGACCCCATGGCTGGAATTCTTCCACTTGCAA | + |
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Preference number: 6 (lower is better) Translates to: SILVLWNSFTDA*ETPWLEFFHLQ Trigger: TTGCAAGTGGAAGAATTCCAGCCATGGGGTCTCCAAAGCATCCGTGAAACTGTTCCACAAGACAAGGATGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS CCA 72 bp | AAATTCTTTCTCCCCTGTTTTGCTACCTACAGCACATaGCCCTTCATCATGGAGTTCAGGGACAGGAAAGGA | + |
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Preference number: 6 (lower is better) Translates to: KFFLPCFATYST*PFIMEFRDRKG Trigger: TCCTTTCCTGTCCCTGAACTCCATGATGAAGGGCCATGTGCTGTAGGTAGCAAAACAGGGGAGAAAGAATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS CAA 72 bp | TCTTTGAGAAAAGGCATATCCATTCCAGCTGGTTGTTaGCTCCTTCCCCAACCTCTGGCATCTCATAGCATC | + |
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Preference number: 6 (lower is better) Translates to: SLRKGISIPAGC*LLPQPLASHSI Trigger: GATGCTATGAGATGCCAGAGGTTGGGGAAGGAGCAAACAACCAGCTGGAATGGATATGCCTTTTCTCAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS GCA 72 bp | GTCAAGAAGCAACCTGTCATTGGCTTTCTCCTTCATTaGAGTCAATTAATCTCCCACCTGTTAGACTTTCCA | + |
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Preference number: 6 (lower is better) Translates to: VKKQPVIGFLLH*SQLISHLLDFP Trigger: TGGAAAGTCTAACAGGTGGGAGATTAATTGACTGCAATGAAGGAGAAAGCCAATGACAGGTTGCTTCTTGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS CCA 72 bp | CTCTCAATAAGGGTGAGGAATTCAAGAGTCACCAGCTaGTTTTCAGTCTCCTGCTTTATAAATCCCTCACTT | + |
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Preference number: 6 (lower is better) Translates to: LSIRVRNSRVTS*FSVSCFINPSL Trigger: AAGTGAGGGATTTATAAAGCAGGAGACTGAAAACCAGCTGGTGACTCTTGAATTCCTCACCCTTATTGAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS CCA 72 bp | GTGCTGAACAATTCCAGTCAAGAAGCAACCTGTCATTaGCTTTCTCCTTCATTGCAGTCAATTAATCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: VLNNSSQEATCH*LSPSLQSINLP Trigger: TGGGAGATTAATTGACTGCAATGAAGGAGAAAGCCAATGACAGGTTGCTTCTTGACTGGAATTGTTCAGCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS CAA 72 bp | AGTCAAGAAGCAACCTGTCATTGGCTTTCTCCTTCATaGCAGTCAATTAATCTCCCACCTGTTAGACTTTCC | + |
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Preference number: 6 (lower is better) Translates to: SQEATCHWLSPS*QSINLPPVRLS Trigger: GGAAAGTCTAACAGGTGGGAGATTAATTGACTGCAATGAAGGAGAAAGCCAATGACAGGTTGCTTCTTGACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS TCA 72 bp | GTTGTGTTTCTAAAACCCTTCCCTCTTGATTTGAGGTaGAAGGGTGAGGGCTATAAGCCTTTTATACTCTCA | + |
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Preference number: 6 (lower is better) Translates to: VVFLKPFPLDLR*KGEGYKPFILS Trigger: TGAGAGTATAAAAGGCTTATAGCCCTCACCCTTTCACCTCAAATCAAGAGGGAAGGGTTTTAGAAACACAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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| CDS CCA 72 bp | TTGCTGAGTGATCTTTGTCTCTTAAGGTGGTTCATTTaGTCAGAACTTAAGAAAACACACTATCTTTGTCCT | + |
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Preference number: 6 (lower is better) Translates to: LLSDLCLLRWFI*SELKKTHYLCP Trigger: AGGACAAAGATAGTGTGTTTTCTTAAGTTCTGACCAAATGAACCACCTTAAGAGACAAAGATCACTCAGCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000429530.1 |
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