Pregenerated sensors for SCAT2 (Homo sapiens)

Ensembl gene IDs: ENSG00000257596

Ensembl transcript IDs: ENST00000547177.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GTCTCATTTCTCATGCTGGAAAGCTCCCTCCTCCTAAGCTCAGTGTaGACCACCAGTCTTGATGCTTTATCTGGTCTAGGCTCTAGCCCT	+
Preference number: 5 (lower is better) Translates to: VSFLMLESSLLLSSV*TTSLDALSGLGSSP Trigger: AGGGCTAGAGCCTAGACCAGATAAAGCATCAAGACTGGTGGTTCACACTGAGCTTAGGAGGAGGGAGCTTTCCAGCATGAGAAATGAGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000547177.1
CDS GCA 90 bp	CCTCTGTCATGGTATTGGGATTCTATCTTAATCACTCCATCATCCTaGCAGCCATGTCTCATTTCTCATGCTGGAAAGCTCCCTCCTCCT	+
Preference number: 5 (lower is better) Translates to: PLSWYWDSILITPSS*QPCLISHAGKLPPP Trigger: AGGAGGAGGGAGCTTTCCAGCATGAGAAATGAGACATGGCTGGCAGGATGATGGAGTGATTAAGATAGAATCCCAATACCATGACAGAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000547177.1
CDS CCA 90 bp	AGGGTAATATTTAGGGTTCTGGGGACAGAAGATTCATCCATCACCTaGATTATTCCTTGCCTTTTAATTAGATTTCCTTCGAAGTGTGTT	+
Preference number: 5 (lower is better) Translates to: RVIFRVLGTEDSSIT*IIPCLLIRFPSKCV Trigger: AACACACTTCGAAGGAAATCTAATTAAAAGGCAAGGAATAATCCAGGTGATGGATGAATCTTCTGTCCCCAGAACCCTAAATATTACCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000547177.1
CDS TCA 90 bp	CTCTTTCTCCCGGGAACTTTCATATATTTCTTTTCTTTACACCATTaGAGATATCCTAAAGTCCCTCTTTTTGCTGTTCCTTTGAGGATA	+
Preference number: 5 (lower is better) Translates to: LFLPGTFIYFFSLHH*RYPKVPLFAVPLRI Trigger: TATCCTCAAAGGAACAGCAAAAAGAGGGACTTTAGGATATCTTCAATGGTGTAAAGAAAAGAAATATATGAAAGTTCCCGGGAGAAAGAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000547177.1
CDS GCA 72 bp	TGGTATTGGGATTCTATCTTAATCACTCCATCATCCTaGCAGCCATGTCTCATTTCTCATGCTGGAAAGCTC	+
Preference number: 6 (lower is better) Translates to: WYWDSILITPSS*QPCLISHAGKL Trigger: GAGCTTTCCAGCATGAGAAATGAGACATGGCTGGCAGGATGATGGAGTGATTAAGATAGAATCCCAATACCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000547177.1
CDS CAA 72 bp	CCTTCGAAGTGTGTTTTACATGCAGTCTATCTCCTTTaGGTAATGCCCACTCTGCTTATTCCAGGATCCTTT	+
Preference number: 6 (lower is better) Translates to: PSKCVLHAVYLL*VMPTLLIPGSF Trigger: AAAGGATCCTGGAATAAGCAGAGTGGGCATTACCAAAAGGAGATAGACTGCATGTAAAACACACTTCGAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000547177.1
CDS CAA 90 bp	ATTAGATTTCCTTCGAAGTGTGTTTTACATGCAGTCTATCTCCTTTaGGTAATGCCCACTCTGCTTATTCCAGGATCCTTTCCCTTGGAG	+
Preference number: 6 (lower is better) Translates to: IRFPSKCVLHAVYLL*VMPTLLIPGSFPLE Trigger: CTCCAAGGGAAAGGATCCTGGAATAAGCAGAGTGGGCATTACCAAAAGGAGATAGACTGCATGTAAAACACACTTCGAAGGAAATCTAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000547177.1
CDS CCA 72 bp	TTTAGGGTTCTGGGGACAGAAGATTCATCCATCACCTaGATTATTCCTTGCCTTTTAATTAGATTTCCTTCG	+
Preference number: 6 (lower is better) Translates to: FRVLGTEDSSIT*IIPCLLIRFPS Trigger: CGAAGGAAATCTAATTAAAAGGCAAGGAATAATCCAGGTGATGGATGAATCTTCTGTCCCCAGAACCCTAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000547177.1

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