Pregenerated sensors for SCARNA6 (Homo sapiens)

Ensembl gene IDs: ENSG00000251791

Ensembl transcript IDs: ENST00000515982.1, ENST00000625643.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CACGGAGTGTCAGCTGCCCTTCTGCCCATCGCAGCACTTCTGAAGTaGGATGGAGGAGAGGCAGCTGGGGATAACTGGGATGCCGGGAGG	+
Preference number: 5 (lower is better) Translates to: HGVSAALLPIAALLK*DGGEAAGDNWDAGR Trigger: CCTCCCGGCATCCCAGTTATCCCCAGCTGCCTCTCCTCCATCGCACTTCAGAAGTGCTGCGATGGGCAGAAGGGCAGCTGACACTCCGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000515982.1 ENST00000625643.1
CDS TCA 90 bp	GGATGCCAACCAGTGTCTTCCCTGAGCTCACGGAGGAACACAGAATaGGGGACATCACGGAGTGTCAGCTGCCCTTCTGCCCATCGCAGC	+
Preference number: 5 (lower is better) Translates to: GCQPVSSLSSRRNTE*GTSRSVSCPSAHRS Trigger: GCTGCGATGGGCAGAAGGGCAGCTGACACTCCGTGATGTCCCTCATTCTGTGTTCCTCCGTGAGCTCAGGGAAGACACTGGTTGGCATCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000515982.1 ENST00000625643.1
CDS TCA 90 bp	AATCCCTTTGTGACTAAGCTGTTGGATGCCAACCAGTGTCTTCCCTaGGCTCACGGAGGAACACAGAATGAGGGACATCACGGAGTGTCA	+
Preference number: 5 (lower is better) Translates to: NPFVTKLLDANQCLP*AHGGTQNEGHHGVS Trigger: TGACACTCCGTGATGTCCCTCATTCTGTGTTCCTCCGTGAGCTCAGGGAAGACACTGGTTGGCATCCAACAGCTTAGTCACAAAGGGATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000515982.1 ENST00000625643.1
CDS TCA 90 bp	ATCATAGCCACAGATACCAGCACTCCCAACAATCAAATCCCTTTGTaGCTAAGCTGTTGGATGCCAACCAGTGTCTTCCCTGAGCTCACG	+
Preference number: 5 (lower is better) Translates to: IIATDTSTPNNQIPL*LSCWMPTSVFPELT Trigger: CGTGAGCTCAGGGAAGACACTGGTTGGCATCCAACAGCTTAGTCACAAAGGGATTTGATTGTTGGGAGTGCTGGTATCTGTGGCTATGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000515982.1 ENST00000625643.1
CDS TCA 72 bp	CCAGTGTCTTCCCTGAGCTCACGGAGGAACACAGAATaGGGGACATCACGGAGTGTCAGCTGCCCTTCTGCC	+
Preference number: 6 (lower is better) Translates to: PVSSLSSRRNTE*GTSRSVSCPSA Trigger: GGCAGAAGGGCAGCTGACACTCCGTGATGTCCCTCATTCTGTGTTCCTCCGTGAGCTCAGGGAAGACACTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000515982.1 ENST00000625643.1
CDS TCA 72 bp	GTGACTAAGCTGTTGGATGCCAACCAGTGTCTTCCCTaGGCTCACGGAGGAACACAGAATGAGGGACATCAC	+
Preference number: 6 (lower is better) Translates to: VTKLLDANQCLP*AHGGTQNEGHH Trigger: GTGATGTCCCTCATTCTGTGTTCCTCCGTGAGCTCAGGGAAGACACTGGTTGGCATCCAACAGCTTAGTCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000515982.1 ENST00000625643.1
CDS TCA 72 bp	ACAGATACCAGCACTCCCAACAATCAAATCCCTTTGTaGCTAAGCTGTTGGATGCCAACCAGTGTCTTCCCT	+
Preference number: 6 (lower is better) Translates to: TDTSTPNNQIPL*LSCWMPTSVFP Trigger: AGGGAAGACACTGGTTGGCATCCAACAGCTTAGTCACAAAGGGATTTGATTGTTGGGAGTGCTGGTATCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000515982.1 ENST00000625643.1

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