Pregenerated sensors for SCARNA13 (Homo sapiens)

Ensembl gene IDs: ENSG00000252481

Ensembl transcript IDs: ENST00000516672.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	AACAGCTGGCTCTCGAGCAGGCATGCCTCAGCTTCCTCTGGAGTATaGTTTTTCTGCAAGTCTGGTGTGCTCGAGGGTACCACCAACCCT	+
Preference number: 5 (lower is better) Translates to: NSWLSSRHASASSGV*FFCKSGVLEGTTNP Trigger: AGGGTTGGTGGTACCCTCGAGCACACCAGACTTGCAGAAAAAGCATACTCCAGAGGAAGCTGAGGCATGCCTGCTCGAGAGCCAGCTGTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000516672.1
CDS GCA 90 bp	ATGCCTCAGCTTCCTCTGGAGTATGCTTTTTCTGCAAGTCTGGTGTaGTCGAGGGTACCACCAACCCTGTGCGGCTCCAAGACTACAGAT	+
Preference number: 5 (lower is better) Translates to: MPQLPLEYAFSASLV*SRVPPTLCGSKTTD Trigger: ATCTGTAGTCTTGGAGCCGCACAGGGTTGGTGGTACCCTCGAGCACACCAGACTTGCAGAAAAAGCATACTCCAGAGGAAGCTGAGGCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000516672.1
CDS GCA 90 bp	CATTATCACCGTGGCAACAGTGACCAGAAACTATCAGAGGAAAATTaGACATGGAACAGCTGGCTCTCGAGCAGGCATGCCTCAGCTTCC	+
Preference number: 5 (lower is better) Translates to: HYHRGNSDQKLSEEN*TWNSWLSSRHASAS Trigger: GGAAGCTGAGGCATGCCTGCTCGAGAGCCAGCTGTTCCATGTGCAATTTTCCTCTGATAGTTTCTGGTCACTGTTGCCACGGTGATAATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000516672.1
CDS GCA 90 bp	ATCAGAGGAAAATTGCACATGGAACAGCTGGCTCTCGAGCAGGCATaGCTCAGCTTCCTCTGGAGTATGCTTTTTCTGCAAGTCTGGTGT	+
Preference number: 5 (lower is better) Translates to: IRGKLHMEQLALEQA*LSFLWSMLFLQVWC Trigger: ACACCAGACTTGCAGAAAAAGCATACTCCAGAGGAAGCTGAGGCATGCCTGCTCGAGAGCCAGCTGTTCCATGTGCAATTTTCCTCTGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000516672.1
CDS GCA 72 bp	CTTCCTCTGGAGTATGCTTTTTCTGCAAGTCTGGTGTaGTCGAGGGTACCACCAACCCTGTGCGGCTCCAAG	+
Preference number: 6 (lower is better) Translates to: LPLEYAFSASLV*SRVPPTLCGSK Trigger: CTTGGAGCCGCACAGGGTTGGTGGTACCCTCGAGCACACCAGACTTGCAGAAAAAGCATACTCCAGAGGAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000516672.1
CDS CCA 72 bp	CAGCTGGCTCTCGAGCAGGCATGCCTCAGCTTCCTCTaGAGTATGCTTTTTCTGCAAGTCTGGTGTGCTCGA	+
Preference number: 6 (lower is better) Translates to: QLALEQACLSFL*SMLFLQVWCAR Trigger: TCGAGCACACCAGACTTGCAGAAAAAGCATACTCCAGAGGAAGCTGAGGCATGCCTGCTCGAGAGCCAGCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000516672.1
CDS GCA 72 bp	AAATTGCACATGGAACAGCTGGCTCTCGAGCAGGCATaGCTCAGCTTCCTCTGGAGTATGCTTTTTCTGCAA	+
Preference number: 6 (lower is better) Translates to: KLHMEQLALEQA*LSFLWSMLFLQ Trigger: TTGCAGAAAAAGCATACTCCAGAGGAAGCTGAGGCATGCCTGCTCGAGAGCCAGCTGTTCCATGTGCAATTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000516672.1

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