RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SALRNA1 (Homo sapiens)

Ensembl gene IDs: ENSG00000258952

Ensembl transcript IDs: ENST00000555871.2

Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp AAGCCGCCCTGGCAGCGCGTTGCGCCTCCTGCCCGACCGCAGGTGTaGGCGCTCCCTGCCTCCCAGGCCCCGCGCTTCCCGCACAGGGCA +
Preference number: 5 (lower is better)
Translates to: KPPWQRVAPPARPQV*ALPASQAPRFPHRA
Trigger: TGCCCTGTGCGGGAAGCGCGGGGCCTGGGAGGCAGGGAGCGCTCACACCTGCGGTCGGGCAGGAGGCGCAACGCGCTGCCAGGGCGGCTT
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS GCA 90 bp GCAGCGCGTTGCGCCTCCTGCCCGACCGCAGGTGTGAGCGCTCCCTaGCTCCCAGGCCCCGCGCTTCCCGCACAGGGCAGATGGCGCAGG +
Preference number: 5 (lower is better)
Translates to: AARCASCPTAGVSAP*LPGPALPAQGRWRR
Trigger: CCTGCGCCATCTGCCCTGTGCGGGAAGCGCGGGGCCTGGGAGGCAGGGAGCGCTCACACCTGCGGTCGGGCAGGAGGCGCAACGCGCTGC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS CCA 90 bp GTGAGCGGCGCTGGACACCCGGCTGCCGGGCTGGTCCCCGCCCTGTaGCGGCAGGATAAAGCCGCCCTGGCAGCGCGTTGCGCCTCCTGC +
Preference number: 5 (lower is better)
Translates to: VSGAGHPAAGLVPAL*RQDKAALAARCASC
Trigger: GCAGGAGGCGCAACGCGCTGCCAGGGCGGCTTTATCCTGCCGCCACAGGGCGGGGACCAGCCCGGCAGCCGGGTGTCCAGCGCCGCTCAC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS GCA 90 bp CTGTGGCGGCAGGATAAAGCCGCCCTGGCAGCGCGTTGCGCCTCCTaGCCGACCGCAGGTGTGAGCGCTCCCTGCCTCCCAGGCCCCGCG +
Preference number: 5 (lower is better)
Translates to: LWRQDKAALAARCAS*PTAGVSAPCLPGPA
Trigger: CGCGGGGCCTGGGAGGCAGGGAGCGCTCACACCTGCGGTCGGGCAGGAGGCGCAACGCGCTGCCAGGGCGGCTTTATCCTGCCGCCACAG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS GCA 90 bp GTCCCCGCCCTGTGGCGGCAGGATAAAGCCGCCCTGGCAGCGCGTTaGGCCTCCTGCCCGACCGCAGGTGTGAGCGCTCCCTGCCTCCCA +
Preference number: 5 (lower is better)
Translates to: VPALWRQDKAALAAR*ASCPTAGVSAPCLP
Trigger: TGGGAGGCAGGGAGCGCTCACACCTGCGGTCGGGCAGGAGGCGCAACGCGCTGCCAGGGCGGCTTTATCCTGCCGCCACAGGGCGGGGAC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS CCA 90 bp AGCGCTCCCTGCCTCCCAGGCCCCGCGCTTCCCGCACAGGGCAGATaGCGCAGGCCTTGGATCCTGGTTCGGAGGCGGCCTAGGCCCTGC +
Preference number: 5 (lower is better)
Translates to: SAPCLPGPALPAQGR*RRPWILVRRRPRPC
Trigger: GCAGGGCCTAGGCCGCCTCCGAACCAGGATCCAAGGCCTGCGCCATCTGCCCTGTGCGGGAAGCGCGGGGCCTGGGAGGCAGGGAGCGCT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS CCA 90 bp GCCCCGCGCTTCCCGCACAGGGCAGATGGCGCAGGCCTTGGATCCTaGTTCGGAGGCGGCCTAGGCCCTGCTGCCGATTCTCCAGTGCCC +
Preference number: 5 (lower is better)
Translates to: APRFPHRADGAGLGS*FGGGLGPAADSPVP
Trigger: GGGCACTGGAGAATCGGCAGCAGGGCCTAGGCCGCCTCCGAACCAGGATCCAAGGCCTGCGCCATCTGCCCTGTGCGGGAAGCGCGGGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS CCA 90 bp CTCCCAGGCCCCGCGCTTCCCGCACAGGGCAGATGGCGCAGGCCTTaGATCCTGGTTCGGAGGCGGCCTAGGCCCTGCTGCCGATTCTCC +
Preference number: 5 (lower is better)
Translates to: LPGPALPAQGRWRRP*ILVRRRPRPCCRFS
Trigger: GGAGAATCGGCAGCAGGGCCTAGGCCGCCTCCGAACCAGGATCCAAGGCCTGCGCCATCTGCCCTGTGCGGGAAGCGCGGGGCCTGGGAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS GCA 90 bp TGGCGCAGGCCTTGGATCCTGGTTCGGAGGCGGCCTAGGCCCTGCTaGCGATTCTCCAGTGCCCTTCTTGCTTCAGACACCTCCTGTCTC +
Preference number: 5 (lower is better)
Translates to: WRRPWILVRRRPRPC*RFSSALLASDTSCL
Trigger: GAGACAGGAGGTGTCTGAAGCAAGAAGGGCACTGGAGAATCGGCAGCAGGGCCTAGGCCGCCTCCGAACCAGGATCCAAGGCCTGCGCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS CCA 90 bp AGGCCTCGGCCTGAGCTTCGTGGTACAACTCAGCTGTCGTCGCCTTaGGTACCCCGAAGCCAACTCCCAGGCCCAAGTCTCAGTCGCCCT +
Preference number: 5 (lower is better)
Translates to: RPRPELRGTTQLSSP*VPRSQLPGPSLSRP
Trigger: AGGGCGACTGAGACTTGGGCCTGGGAGTTGGCTTCGGGGTACCCAAGGCGACGACAGCTGAGTTGTACCACGAAGCTCAGGCCGAGGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS GCA 90 bp AGATGGCGCAGGCCTTGGATCCTGGTTCGGAGGCGGCCTAGGCCCTaGTGCCGATTCTCCAGTGCCCTTCTTGCTTCAGACACCTCCTGT +
Preference number: 5 (lower is better)
Translates to: RWRRPWILVRRRPRP*CRFSSALLASDTSC
Trigger: ACAGGAGGTGTCTGAAGCAAGAAGGGCACTGGAGAATCGGCAGCAGGGCCTAGGCCGCCTCCGAACCAGGATCCAAGGCCTGCGCCATCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS TCA 90 bp TGCCAGTATGGATTCGAAGGCCAGACAAGGGAGGAGGCCTCGGCCTaGGCTTCGTGGTACAACTCAGCTGTCGTCGCCTTGGGTACCCCG +
Preference number: 5 (lower is better)
Translates to: CQYGFEGQTREEASA*ASWYNSAVVALGTP
Trigger: CGGGGTACCCAAGGCGACGACAGCTGAGTTGTACCACGAAGCTCAGGCCGAGGCCTCCTCCCTTGTCTGGCCTTCGAATCCATACTGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS CCA 90 bp AGTTACTATAATAAGGCATGGAAATGTATACCACCTCCCTTCATCTaGTCCCGTCCTTTCCATGCTAACTTAGAAGATCAGTGTTTTATG +
Preference number: 5 (lower is better)
Translates to: SYYNKAWKCIPPPFI*SRPFHANLEDQCFM
Trigger: CATAAAACACTGATCTTCTAAGTTAGCATGGAAAGGACGGGACCAGATGAAGGGAGGTGGTATACATTTCCATGCCTTATTATAGTAACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS CCA 72 bp GCTGGACACCCGGCTGCCGGGCTGGTCCCCGCCCTGTaGCGGCAGGATAAAGCCGCCCTGGCAGCGCGTTGC +
Preference number: 6 (lower is better)
Translates to: AGHPAAGLVPAL*RQDKAALAARC
Trigger: GCAACGCGCTGCCAGGGCGGCTTTATCCTGCCGCCACAGGGCGGGGACCAGCCCGGCAGCCGGGTGTCCAGC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS CCA 72 bp TGGTCCCCGCCCTGTGGCGGCAGGATAAAGCCGCCCTaGCAGCGCGTTGCGCCTCCTGCCCGACCGCAGGTG +
Preference number: 6 (lower is better)
Translates to: WSPPCGGRIKPP*QRVAPPARPQV
Trigger: CACCTGCGGTCGGGCAGGAGGCGCAACGCGCTGCCAGGGCGGCTTTATCCTGCCGCCACAGGGCGGGGACCA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS GCA 72 bp CTGTGGCGGCAGGATAAAGCCGCCCTGGCAGCGCGTTaGGCCTCCTGCCCGACCGCAGGTGTGAGCGCTCCC +
Preference number: 6 (lower is better)
Translates to: LWRQDKAALAAR*ASCPTAGVSAP
Trigger: GGGAGCGCTCACACCTGCGGTCGGGCAGGAGGCGCAACGCGCTGCCAGGGCGGCTTTATCCTGCCGCCACAG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS CCA 72 bp CCCGCGCTTCCCGCACAGGGCAGATGGCGCAGGCCTTaGATCCTGGTTCGGAGGCGGCCTAGGCCCTGCTGC +
Preference number: 6 (lower is better)
Translates to: PALPAQGRWRRP*ILVRRRPRPCC
Trigger: GCAGCAGGGCCTAGGCCGCCTCCGAACCAGGATCCAAGGCCTGCGCCATCTGCCCTGTGCGGGAAGCGCGGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS CCA 72 bp TGCCTCCCAGGCCCCGCGCTTCCCGCACAGGGCAGATaGCGCAGGCCTTGGATCCTGGTTCGGAGGCGGCCT +
Preference number: 6 (lower is better)
Translates to: CLPGPALPAQGR*RRPWILVRRRP
Trigger: AGGCCGCCTCCGAACCAGGATCCAAGGCCTGCGCCATCTGCCCTGTGCGGGAAGCGCGGGGCCTGGGAGGCA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS GCA 72 bp CAGGATAAAGCCGCCCTGGCAGCGCGTTGCGCCTCCTaGCCGACCGCAGGTGTGAGCGCTCCCTGCCTCCCA +
Preference number: 6 (lower is better)
Translates to: QDKAALAARCAS*PTAGVSAPCLP
Trigger: TGGGAGGCAGGGAGCGCTCACACCTGCGGTCGGGCAGGAGGCGCAACGCGCTGCCAGGGCGGCTTTATCCTG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS GCA 72 bp CCTTGGATCCTGGTTCGGAGGCGGCCTAGGCCCTGCTaGCGATTCTCCAGTGCCCTTCTTGCTTCAGACACC +
Preference number: 6 (lower is better)
Translates to: PWILVRRRPRPC*RFSSALLASDT
Trigger: GGTGTCTGAAGCAAGAAGGGCACTGGAGAATCGGCAGCAGGGCCTAGGCCGCCTCCGAACCAGGATCCAAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS GCA 72 bp AGGCCTTGGATCCTGGTTCGGAGGCGGCCTAGGCCCTaGTGCCGATTCTCCAGTGCCCTTCTTGCTTCAGAC +
Preference number: 6 (lower is better)
Translates to: RPWILVRRRPRP*CRFSSALLASD
Trigger: GTCTGAAGCAAGAAGGGCACTGGAGAATCGGCAGCAGGGCCTAGGCCGCCTCCGAACCAGGATCCAAGGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS TCA 72 bp GGATTCGAAGGCCAGACAAGGGAGGAGGCCTCGGCCTaGGCTTCGTGGTACAACTCAGCTGTCGTCGCCTTG +
Preference number: 6 (lower is better)
Translates to: GFEGQTREEASA*ASWYNSAVVAL
Trigger: CAAGGCGACGACAGCTGAGTTGTACCACGAAGCTCAGGCCGAGGCCTCCTCCCTTGTCTGGCCTTCGAATCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS CCA 72 bp CCTGAGCTTCGTGGTACAACTCAGCTGTCGTCGCCTTaGGTACCCCGAAGCCAACTCCCAGGCCCAAGTCTC +
Preference number: 6 (lower is better)
Translates to: PELRGTTQLSSP*VPRSQLPGPSL
Trigger: GAGACTTGGGCCTGGGAGTTGGCTTCGGGGTACCCAAGGCGACGACAGCTGAGTTGTACCACGAAGCTCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS CAA 72 bp TATGCAGTCATATTCCTCTTAACTTTTGCAGCACTTTaGCCTGTGATAGTGGTGGGGACTGGTAGTGGTGGG +
Preference number: 6 (lower is better)
Translates to: YAVIFLLTFAAL*PVIVVGTGSGG
Trigger: CCCACCACTACCAGTCCCCACCACTATCACAGGCAAAAGTGCTGCAAAAGTTAAGAGGAATATGACTGCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS CCA 72 bp AATAAGGCATGGAAATGTATACCACCTCCCTTCATCTaGTCCCGTCCTTTCCATGCTAACTTAGAAGATCAG +
Preference number: 6 (lower is better)
Translates to: NKAWKCIPPPFI*SRPFHANLEDQ
Trigger: CTGATCTTCTAAGTTAGCATGGAAAGGACGGGACCAGATGAAGGGAGGTGGTATACATTTCCATGCCTTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000555871.2
CDS TCA 72 bp GGACCAGGAGGATTATTTTACATACAGTATATCTCCTaGTTCCTCTCTCTGTCTGTCTGTCTGTCTCTCTCT +
Preference number: 6 (lower is better)
Translates to: GPGGLFYIQYIS*FLSLSVCLSLS
Trigger: AGAGAGAGACAGACAGACAGACAGAGAGAGGAATCAGGAGATATACTGTATGTAAAATAATCCTCCTGGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000555871.2