Pregenerated sensors for SAA4 (Homo sapiens)
Ensembl gene IDs: ENSG00000148965Ensembl transcript IDs: ENST00000278222.7
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGGTGCCCTATACCAGTTCCTGGGGACACAAAGCTCAGTGACCCTGTGTCCCTGACAGCCCAGTTTCCCTaGGAGCAGAGGAGCAGGAAG | + |
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Preference number: 2 (lower is better) Translates to: RCPIPVPGDTKLSDPVSLTAQFP*EQRSRK Trigger: CTTCCTGCTCCTCTGCTCTCAGGGAAACTGGGCTGT...CAGGGACACAGGGTCACTGAGCTTTGTGTCCCCAGGAACTGGTATAGGGCACCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS-3UTR TCA 90 bp | AACACCTCTAGGTGCCCTATACCAGTTCCTGGGGACACAAAGCTCAGTGACCCTGCAGGCCGTCAGGTCTaGAGCGGTCGGGGTCTTTGC | + |
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Preference number: 4 (lower is better) Translates to: NTSRCPIPVPGDTKLSDPAGRQV*SGRGLC Trigger: GCAAAGACCCCGACCGCTTCAGACCTGACGGCCTGC...AGGGTCACTGAGCTTTGTGTCCCCAGGAACTGGTATAGGGCACCTAGAGGTGTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS-3UTR CCA 90 bp | CTAGGTGCCCTATACCAGTTCCTGGGGACACAAAGCTCAGTGACCCTGTGTCCCCCCTGTGTCCCTGTCTaGGGGGAGAAGTGTGTGGCT | + |
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Preference number: 4 (lower is better) Translates to: LGALYQFLGTQSSVTLCPPCVPV*GEKCVA Trigger: AGCCACACACTTCTCCCCCCAGACAGGGACACAGGG...GGGACACAGGGTCACTGAGCTTTGTGTCCCCAGGAACTGGTATAGGGCACCTAG 59% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS-3UTR TCA 90 bp | CTAGGTGCCCTATACCAGTTCCTGGGGACACAAAGCTCAGTGACCCTGTGTCCCACAGCCCAGTTTCCCTaGGAGCAGAGGAGCAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: LGALYQFLGTQSSVTLCPTAQFP*EQRSRK Trigger: CTTCCTGCTCCTCTGCTCTCAGGGAAACTGGGCTGT...GGGACACAGGGTCACTGAGCTTTGTGTCCCCAGGAACTGGTATAGGGCACCTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS-3UTR GCA 90 bp | AACACCTCTAGGTGCCCTATACCAGTTCCTGGGGACACAAAGCTCAGTGACCCTAGCGGTCGGGGTCTTTaGCACTCCGGCCCCATTCCT | + |
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Preference number: 4 (lower is better) Translates to: NTSRCPIPVPGDTKLSDPSGRGL*HSGPIP Trigger: AGGAATGGGGCCGGAGTGGCAAAGACCCCGACCGCT...AGGGTCACTGAGCTTTGTGTCCCCAGGAACTGGTATAGGGCACCTAGAGGTGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS-3UTR GCA 90 bp | TGCCCTATACCAGTTCCTGGGGACACAAAGCTCAGTGACCCTGTGTCCCTGTCTTGTCCCAATAGGCTCTaGCCATGTCCCCAACCCCTT | + |
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Preference number: 4 (lower is better) Translates to: CPIPVPGDTKLSDPVSLSCPNRL*PCPQPL Trigger: AAGGGGTTGGGGACATGGGCAGAGCCTATTGGGACA...AGACAGGGACACAGGGTCACTGAGCTTTGTGTCCCCAGGAACTGGTATAGGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS-3UTR TCA 90 bp | CTATACCAGTTCCTGGGGACACAAAGCTCAGTGACCCTGTGTCCCTGTCTGGGGCTTGGAGAGCCTCCTTaGAAAACGAACGCCAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: LYQFLGTQSSVTLCPCLGLGEPP*KTNASF Trigger: AAAGCTGGCGTTCGTTTTTCAAGGAGGCTCTCCAAG...CCCCAGACAGGGACACAGGGTCACTGAGCTTTGTGTCCCCAGGAACTGGTATAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS-3UTR CCA 90 bp | GCCCTATACCAGTTCCTGGGGACACAAAGCTCAGTGACCCTGTGTCCCTGTCTGGGTATCTTCTGGCCGTaGAGCTATAGTTGGTACCTC | + |
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Preference number: 4 (lower is better) Translates to: ALYQFLGTQSSVTLCPCLGIFWP*SYSWYL Trigger: GAGGTACCAACTATAGCTCCACGGCCAGAAGATACC...CAGACAGGGACACAGGGTCACTGAGCTTTGTGTCCCCAGGAACTGGTATAGGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS-3UTR TCA 90 bp | GCCCTATACCAGTTCCTGGGGACACAAAGCTCAGTGACCCTGTGTCCCTGTCTGGGACCTTTCTCCAGATaGAATTTCAGTAAAGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: ALYQFLGTQSSVTLCPCLGPFSR*NFSKGR Trigger: TCTGCCTTTACTGAAATTTCATCTGGAGAAAGGTCC...CAGACAGGGACACAGGGTCACTGAGCTTTGTGTCCCCAGGAACTGGTATAGGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS-3UTR CCA 90 bp | TCTAGGTGCCCTATACCAGTTCCTGGGGACACAAAGCTCAGTGACCCTGTGTCCAGCCTCATTGTGCTGTaGACCTTTCTCCAGATGAAA | + |
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Preference number: 4 (lower is better) Translates to: SRCPIPVPGDTKLSDPVSSLIVL*TFLQMK Trigger: TTTCATCTGGAGAAAGGTCCACAGCACAATGAGGCT...GGACACAGGGTCACTGAGCTTTGTGTCCCCAGGAACTGGTATAGGGCACCTAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS-3UTR CCA 90 bp | AACACCTCTAGGTGCCCTATACCAGTTCCTGGGGACACAAAGCTCAGTGACCCTCCTCAGCTTTCTCGTTaGACTTCGAGTCCTCCAATA | + |
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Preference number: 4 (lower is better) Translates to: NTSRCPIPVPGDTKLSDPPQLSR*TSSPPI Trigger: TATTGGAGGACTCGAAGTCCAACGAGAAAGCTGAGG...AGGGTCACTGAGCTTTGTGTCCCCAGGAACTGGTATAGGGCACCTAGAGGTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS-3UTR TCA 90 bp | TTTGACAAACATTTATTGAACACCTCTAGGTGCCCTATACCAGTTCCTGGGGACGGACACAAAGCTCAGTaGCCCTGTGTCCCTGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: FDKHLLNTSRCPIPVPGDGHKAQ*PCVPVW Trigger: CCAGACAGGGACACAGGGTCACTGAGCTTTGTGTCC...GTCCCCAGGAACTGGTATAGGGCACCTAGAGGTGTTCAATAAATGTTTGTCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS-3UTR TCA 90 bp | TCTAGGTGCCCTATACCAGTTCCTGGGGACACAAAGCTCAGTGACCCTGTGTCCTTGACAAACATTTATTaGACACCTCTAGGTGCCCTA | + |
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Preference number: 4 (lower is better) Translates to: SRCPIPVPGDTKLSDPVSLTNIY*TPLGAL Trigger: TAGGGCACCTAGAGGTGTTCAATAAATGTTTGTCAA...GGACACAGGGTCACTGAGCTTTGTGTCCCCAGGAACTGGTATAGGGCACCTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS-3UTR CAA 90 bp | CTAGGTGCCCTATACCAGTTCCTGGGGACACAAAGCTCAGTGACCCTGTGTCCCAAGCGGTCGGGGTCTTaGCCACTCCGGCCCCATTCC | + |
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Preference number: 5 (lower is better) Translates to: LGALYQFLGTQSSVTLCPKRSGS*PLRPHS Trigger: GGAATGGGGCCGGAGTGGCAAAGACCCCGACCGCTT...GGGACACAGGGTCACTGAGCTTTGTGTCCCCAGGAACTGGTATAGGGCACCTAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS-3UTR CAA 90 bp | AACACCTCTAGGTGCCCTATACCAGTTCCTGGGGACACAAAGCTCAGTGACCCTTCCTCAGCTTTCTCGTaGGACTTCGAGTCCTCCAAT | + |
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Preference number: 5 (lower is better) Translates to: NTSRCPIPVPGDTKLSDPSSAFS*DFESSN Trigger: ATTGGAGGACTCGAAGTCCAACGAGAAAGCTGAGGA...AGGGTCACTGAGCTTTGTGTCCCCAGGAACTGGTATAGGGCACCTAGAGGTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS-3UTR CAA 90 bp | AGGTGCCCTATACCAGTTCCTGGGGACACAAAGCTCAGTGACCCTGTGTCCCTGTTTGACAAACATTTATaGAACACCTCTAGGTGCCCT | + |
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Preference number: 5 (lower is better) Translates to: RCPIPVPGDTKLSDPVSLFDKHL*NTSRCP Trigger: AGGGCACCTAGAGGTGTTCAATAAATGTTTGTCAAA...CAGGGACACAGGGTCACTGAGCTTTGTGTCCCCAGGAACTGGTATAGGGCACCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS-3UTR CAA 90 bp | TTTGACAAACATTTATTGAACACCTCTAGGTGCCCTATACCAGTTCCTGGGGACCCTTGGAGAGCCTCCTaGAAAAACGAACGCCAGCTT | + |
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Preference number: 5 (lower is better) Translates to: FDKHLLNTSRCPIPVPGDPWRAS*KNERQL Trigger: AAGCTGGCGTTCGTTTTTCAAGGAGGCTCTCCAAGG...GTCCCCAGGAACTGGTATAGGGCACCTAGAGGTGTTCAATAAATGTTTGTCAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS-3UTR CAA 90 bp | TTTGACAAACATTTATTGAACACCTCTAGGTGCCCTATACCAGTTCCTGGGGACCATGTCCCCAACCCCTaGGAGAGCCTCCTTGAAAAA | + |
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Preference number: 5 (lower is better) Translates to: FDKHLLNTSRCPIPVPGDHVPNP*ESLLEK Trigger: TTTTTCAAGGAGGCTCTCCAAGGGGTTGGGGACATG...GTCCCCAGGAACTGGTATAGGGCACCTAGAGGTGTTCAATAAATGTTTGTCAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS GCA 90 bp | CCCATTCCTCAGCTTTCTCGTTGGACTTCGAGTCCTCCAATACAGTaGTGCTGTTTCCAAATAAATAGCAGTCTATTAATCCCTGAAGAT | + |
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Preference number: 5 (lower is better) Translates to: PIPQLSRWTSSPPIQ*CCFQINSSLLIPED Trigger: ATCTTCAGGGATTAATAGACTGCTATTTATTTGGAAACAGCAGCACTGTATTGGAGGACTCGAAGTCCAACGAGAAAGCTGAGGAATGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS CAA 72 bp | TTAGGCAGGCCGTCAGGTCTGAAGCGGTCGGGGTCTTaGCCACTCCGGCCCCATTCCTCAGCTTTCTCGTTG | + |
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Preference number: 6 (lower is better) Translates to: LGRPSGLKRSGS*PLRPHSSAFSL Trigger: CAACGAGAAAGCTGAGGAATGGGGCCGGAGTGGCAAAGACCCCGACCGCTTCAGACCTGACGGCCTGCCTAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS CAA 90 bp | CAGTATTTCTTAGGCAGGCCGTCAGGTCTGAAGCGGTCGGGGTCTTaGCCACTCCGGCCCCATTCCTCAGCTTTCTCGTTGGACTTCGAG | + |
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Preference number: 6 (lower is better) Translates to: QYFLGRPSGLKRSGS*PLRPHSSAFSLDFE Trigger: CTCGAAGTCCAACGAGAAAGCTGAGGAATGGGGCCGGAGTGGCAAAGACCCCGACCGCTTCAGACCTGACGGCCTGCCTAAGAAATACTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS CAA 72 bp | TCTTTGCCACTCCGGCCCCATTCCTCAGCTTTCTCGTaGGACTTCGAGTCCTCCAATACAGTGCTGCTGTTT | + |
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Preference number: 6 (lower is better) Translates to: SLPLRPHSSAFS*DFESSNTVLLF Trigger: AAACAGCAGCACTGTATTGGAGGACTCGAAGTCCAACGAGAAAGCTGAGGAATGGGGCCGGAGTGGCAAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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| CDS GCA 72 bp | CAGCTTTCTCGTTGGACTTCGAGTCCTCCAATACAGTaGTGCTGTTTCCAAATAAATAGCAGTCTATTAATC | + |
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Preference number: 6 (lower is better) Translates to: QLSRWTSSPPIQ*CCFQINSSLLI Trigger: GATTAATAGACTGCTATTTATTTGGAAACAGCAGCACTGTATTGGAGGACTCGAAGTCCAACGAGAAAGCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000278222.7 |
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