Pregenerated sensors for S100A8 (Homo sapiens)
Ensembl gene IDs: ENSG00000143546Ensembl transcript IDs: ENST00000368732.5, ENST00000368733.4, ENST00000477801.1
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TTATTATTCTGCAGGTACATGTCCAGGGGCCCAGCCTCTGGGCCCAGTAACTCACCAGCTCGGTCAACATaGTGCCCACGGACTTGCCCC | + |
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Preference number: 4 (lower is better) Translates to: LLFCRYMSRGPASGPSNSPARST*CPRTCP Trigger: GGGGCAAGTCCGTGGGCATCATGTTGACCGAGCTGG...TGAGTTACTGGGCCCAGAGGCTGGGCCCCTGGACATGTACCTGCAGAATAATAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000368732.5 ENST00000368733.4 |
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| CDS-3UTR TCA 90 bp | GGTATTGATGACTTTATTATTCTGCAGGTACATGTCCAGGGGCCCAGCCTCTGGCCAGCTCGGTCAACATaGTGCCCACGGACTTGCCCC | + |
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Preference number: 4 (lower is better) Translates to: GIDDFIILQVHVQGPSLWPARST*CPRTCP Trigger: GGGGCAAGTCCGTGGGCATCATGTTGACCGAGCTGG...CCAGAGGCTGGGCCCCTGGACATGTACCTGCAGAATAATAAAGTCATCAATACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000368732.5 ENST00000368733.4 |
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| CDS-3UTR TCA 90 bp | ATGACTTTATTATTCTGCAGGTACATGTCCAGGGGCCCAGCCTCTGGGCCCAGTCCCCACCAGGTCTTCTaGAAGACAGCTGACAAGAGA | + |
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Preference number: 4 (lower is better) Translates to: MTLLFCRYMSRGPASGPSPHQVF*KTADKR Trigger: TCTCTTGTCAGCTGTCTTTCAGAAGACCTGGTGGGG...ACTGGGCCCAGAGGCTGGGCCCCTGGACATGTACCTGCAGAATAATAAAGTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368733.4 |
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| CDS-3UTR GCA 90 bp | ATTGATGACTTTATTATTCTGCAGGTACATGTCCAGGGGCCCAGCCTCTGGGCCCCACCCACTGGAAGGTaGTGGAGGATACTCTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: IDDFIILQVHVQGPSLWAPPTGR*WRILSF Trigger: GAAGGAGAGTATCCTCCAGCACCTTCCAGTGGGTGG...GGCCCAGAGGCTGGGCCCCTGGACATGTACCTGCAGAATAATAAAGTCATCAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368732.5 |
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| CDS-3UTR CCA 90 bp | TTATTATTCTGCAGGTACATGTCCAGGGGCCCAGCCTCTGGGCCCAGTAACTCACCCACTGGAAGGTGCTaGAGGATACTCTCCTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: LLFCRYMSRGPASGPSNSPTGRC*RILSFL Trigger: AAGGAAGGAGAGTATCCTCCAGCACCTTCCAGTGGG...TGAGTTACTGGGCCCAGAGGCTGGGCCCCTGGACATGTACCTGCAGAATAATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368732.5 |
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| CDS-3UTR TCA 90 bp | GGTATTGATGACTTTATTATTCTGCAGGTACATGTCCAGGGGCCCAGCCTCTGGTGCTCCAGACCTCCCTaGGCTTTCTCTCTCCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: GIDDFIILQVHVQGPSLWCSRPP*AFSLLS Trigger: AGAGAGGAGAGAGAAAGCTCAGGGAGGTCTGGAGCA...CCAGAGGCTGGGCCCCTGGACATGTACCTGCAGAATAATAAAGTCATCAATACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368732.5 |
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| CDS-3UTR TCA 90 bp | ATGACTTTATTATTCTGCAGGTACATGTCCAGGGGCCCAGCCTCTGGGCCCAGTTTTTTCCTGATATACTaGGGACACTCGGTCTCTAGC | + |
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Preference number: 4 (lower is better) Translates to: MTLLFCRYMSRGPASGPSFFLIY*GHSVSS Trigger: GCTAGAGACCGAGTGTCCTCAGTATATCAGGAAAAA...ACTGGGCCCAGAGGCTGGGCCCCTGGACATGTACCTGCAGAATAATAAAGTCAT 50% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000368732.5 ENST00000368733.4 |
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| CDS-3UTR TCA 90 bp | ACTTTATTATTCTGCAGGTACATGTCCAGGGGCCCAGCCTCTGGGCCCAGTAACTTTTTCCTGATATACTaGGGACACTCGGTCTCTAGC | + |
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Preference number: 4 (lower is better) Translates to: TLLFCRYMSRGPASGPSNFFLIY*GHSVSS Trigger: GCTAGAGACCGAGTGTCCTCAGTATATCAGGAAAAA...GTTACTGGGCCCAGAGGCTGGGCCCCTGGACATGTACCTGCAGAATAATAAAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000368732.5 ENST00000368733.4 |
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| CDS-3UTR GCA 90 bp | GATGACTTTATTATTCTGCAGGTACATGTCCAGGGGCCCAGCCTCTGGGCCCAGCTCCTGGAAGTTAACTaGACCATCAGTGTTGATATC | + |
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Preference number: 4 (lower is better) Translates to: DDFIILQVHVQGPSLWAQLLEVN*TISVDI Trigger: GATATCAACACTGATGGTGCAGTTAACTTCCAGGAG...CTGGGCCCAGAGGCTGGGCCCCTGGACATGTACCTGCAGAATAATAAAGTCATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000368732.5 ENST00000368733.4 |
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| CDS-3UTR GCA 90 bp | ATGACTTTATTATTCTGCAGGTACATGTCCAGGGGCCCAGCCTCTGGGCCCAGTCTCCTGGAAGTTAACTaGACCATCAGTGTTGATATC | + |
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Preference number: 4 (lower is better) Translates to: MTLLFCRYMSRGPASGPSLLEVN*TISVDI Trigger: GATATCAACACTGATGGTGCAGTTAACTTCCAGGAG...ACTGGGCCCAGAGGCTGGGCCCCTGGACATGTACCTGCAGAATAATAAAGTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000368732.5 ENST00000368733.4 |
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| CDS-3UTR GCA 90 bp | TTATTATTCTGCAGGTACATGTCCAGGGGCCCAGCCTCTGGGCCCAGTAACTCATTTGAACCAGACGTCTaGACCCTTTTTCCTGATATA | + |
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Preference number: 4 (lower is better) Translates to: LLFCRYMSRGPASGPSNSFEPDV*TLFPDI Trigger: TATATCAGGAAAAAGGGTGCAGACGTCTGGTTCAAA...TGAGTTACTGGGCCCAGAGGCTGGGCCCCTGGACATGTACCTGCAGAATAATAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000368732.5 ENST00000368733.4 |
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| CDS-3UTR CAA 90 bp | GATGACTTTATTATTCTGCAGGTACATGTCCAGGGGCCCAGCCTCTGGGCCCAGATGATGCCCACGGACTaGCCCCACCCACTGGAAGGT | + |
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Preference number: 5 (lower is better) Translates to: DDFIILQVHVQGPSLWAQMMPTD*PHPLEG Trigger: ACCTTCCAGTGGGTGGGGCAAGTCCGTGGGCATCAT...CTGGGCCCAGAGGCTGGGCCCCTGGACATGTACCTGCAGAATAATAAAGTCATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368732.5 |
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| CDS GCA 90 bp | TGGCAGGGAATTTGCATCTGGCCAGGGCAGTACGCAGAGGATTCATaGCCCAAGCGATGGCCTTGTCCTGGCCTGCACTCTCCAAATAAC | + |
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Preference number: 5 (lower is better) Translates to: WQGICIWPGQYAEDS*PKRWPCPGLHSPNN Trigger: GTTATTTGGAGAGTGCAGGCCAGGACAAGGCCATCGCTTGGGGCATGAATCCTCTGCGTACTGCCCTGGCCAGATGCAAATTCCCTGCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000477801.1 |
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| CDS CCA 90 bp | TGCATCTGGCCAGGGCAGTACGCAGAGGATTCATGCCCCAAGCGATaGCCTTGTCCTGGCCTGCACTCTCCAAATAACCAAACCAGCAGA | + |
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Preference number: 5 (lower is better) Translates to: CIWPGQYAEDSCPKR*PCPGLHSPNNQTSR Trigger: TCTGCTGGTTTGGTTATTTGGAGAGTGCAGGCCAGGACAAGGCCATCGCTTGGGGCATGAATCCTCTGCGTACTGCCCTGGCCAGATGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477801.1 |
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| CDS CCA 90 bp | GGCCTGCACTCTCCAAATAACCAAACCAGCAGATGGCTATGGCTCTaGTGGGAAGGGTGGGATGATAGGGATACACGTGTGGGAAGGGGA | + |
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Preference number: 5 (lower is better) Translates to: GLHSPNNQTSRWLWL*WEGWDDRDTRVGRG Trigger: TCCCCTTCCCACACGTGTATCCCTATCATCCCACCCTTCCCACCAGAGCCATAGCCATCTGCTGGTTTGGTTATTTGGAGAGTGCAGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477801.1 |
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| CDS GCA 90 bp | AGTACGCAGAGGATTCATGCCCCAAGCGATGGCCTTGTCCTGGCCTaGACTCTCCAAATAACCAAACCAGCAGATGGCTATGGCTCTGGT | + |
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Preference number: 5 (lower is better) Translates to: STQRIHAPSDGLVLA*TLQITKPADGYGSG Trigger: ACCAGAGCCATAGCCATCTGCTGGTTTGGTTATTTGGAGAGTGCAGGCCAGGACAAGGCCATCGCTTGGGGCATGAATCCTCTGCGTACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477801.1 |
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| CDS CCA 90 bp | CTGCACTCTCCAAATAACCAAACCAGCAGATGGCTATGGCTCTGGTaGGAAGGGTGGGATGATAGGGATACACGTGTGGGAAGGGGAAGG | + |
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Preference number: 5 (lower is better) Translates to: LHSPNNQTSRWLWLW*EGWDDRDTRVGRGR Trigger: CCTTCCCCTTCCCACACGTGTATCCCTATCATCCCACCCTTCCCACCAGAGCCATAGCCATCTGCTGGTTTGGTTATTTGGAGAGTGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477801.1 |
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| CDS CCA 90 bp | TGTCCTGGCCTGCACTCTCCAAATAACCAAACCAGCAGATGGCTATaGCTCTGGTGGGAAGGGTGGGATGATAGGGATACACGTGTGGGA | + |
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Preference number: 5 (lower is better) Translates to: CPGLHSPNNQTSRWL*LWWEGWDDRDTRVG Trigger: TCCCACACGTGTATCCCTATCATCCCACCCTTCCCACCAGAGCCATAGCCATCTGCTGGTTTGGTTATTTGGAGAGTGCAGGCCAGGACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000477801.1 |
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| CDS CCA 90 bp | TGGCCTTGTCCTGGCCTGCACTCTCCAAATAACCAAACCAGCAGATaGCTATGGCTCTGGTGGGAAGGGTGGGATGATAGGGATACACGT | + |
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Preference number: 5 (lower is better) Translates to: WPCPGLHSPNNQTSR*LWLWWEGWDDRDTR Trigger: ACGTGTATCCCTATCATCCCACCCTTCCCACCAGAGCCATAGCCATCTGCTGGTTTGGTTATTTGGAGAGTGCAGGCCAGGACAAGGCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000477801.1 |
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| CDS-3UTR CAA 90 bp | ATTGATGACTTTATTATTCTGCAGGTACATGTCCAGGGGCCCAGCCTCTGGGCCCCTCCAGGAGTATCTTaGCTCCAGACCTCCCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: IDDFIILQVHVQGPSLWAPPGVS*LQTSLS Trigger: GCTCAGGGAGGTCTGGAGCAAAGATACTCCTGGAGG...GGCCCAGAGGCTGGGCCCCTGGACATGTACCTGCAGAATAATAAAGTCATCAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368732.5 |
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| CDS CCA 90 bp | CCAAATAACCAAACCAGCAGATGGCTATGGCTCTGGTGGGAAGGGTaGGATGATAGGGATACACGTGTGGGAAGGGGAAGGGTCCATTCA | + |
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Preference number: 5 (lower is better) Translates to: PNNQTSRWLWLWWEG*DDRDTRVGRGRVHS Trigger: TGAATGGACCCTTCCCCTTCCCACACGTGTATCCCTATCATCCCACCCTTCCCACCAGAGCCATAGCCATCTGCTGGTTTGGTTATTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477801.1 |
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| CDS CCA 90 bp | TGCTCAAGAAAAGTCCAGCCTAGGAGACAATGTGCCCTTACCCACTaGAAGGTGCTGGAGGATACTCTCCTTCCTTATCCCTGCCTCACT | + |
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Preference number: 5 (lower is better) Translates to: CSRKVQPRRQCALTH*KVLEDTLLPYPCLT Trigger: AGTGAGGCAGGGATAAGGAAGGAGAGTATCCTCCAGCACCTTCCAGTGGGTAAGGGCACATTGTCTCCTAGGCTGGACTTTTCTTGAGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477801.1 |
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| CDS-3UTR CAA 90 bp | ACTTTATTATTCTGCAGGTACATGTCCAGGGGCCCAGCCTCTGGGCCCAGTAACTTGATATCCAACTCTTaGAACCAGACGTCTGCACCC | + |
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Preference number: 5 (lower is better) Translates to: TLLFCRYMSRGPASGPSNLISNS*NQTSAP Trigger: GGGTGCAGACGTCTGGTTCAAAGAGTTGGATATCAA...GTTACTGGGCCCAGAGGCTGGGCCCCTGGACATGTACCTGCAGAATAATAAAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000368732.5 ENST00000368733.4 |
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| CDS-3UTR CAA 90 bp | TTATTATTCTGCAGGTACATGTCCAGGGGCCCAGCCTCTGGGCCCAGTAACTCATTGATATCCAACTCTTaGAACCAGACGTCTGCACCC | + |
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Preference number: 5 (lower is better) Translates to: LLFCRYMSRGPASGPSNSLISNS*NQTSAP Trigger: GGGTGCAGACGTCTGGTTCAAAGAGTTGGATATCAA...TGAGTTACTGGGCCCAGAGGCTGGGCCCCTGGACATGTACCTGCAGAATAATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000368732.5 ENST00000368733.4 |
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| CDS GCA 90 bp | CACGCCCATCTTTATCACCAGAATGAGGAACTCCTGGAAGTTAACTaGACCATCAGTGTTGATATCCAACTCTTTGAACCAGACGTCTGC | + |
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Preference number: 5 (lower is better) Translates to: HAHLYHQNEELLEVN*TISVDIQLFEPDVC Trigger: GCAGACGTCTGGTTCAAAGAGTTGGATATCAACACTGATGGTGCAGTTAACTTCCAGGAGTTCCTCATTCTGGTGATAAAGATGGGCGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000368732.5 ENST00000368733.4 |
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| CDS CCA 90 bp | TTGTGGGCTGCCACGCCCATCTTTATCACCAGAATGAGGAACTCCTaGAAGTTAACTGCACCATCAGTGTTGATATCCAACTCTTTGAAC | + |
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Preference number: 5 (lower is better) Translates to: LWAATPIFITRMRNS*KLTAPSVLISNSLN Trigger: GTTCAAAGAGTTGGATATCAACACTGATGGTGCAGTTAACTTCCAGGAGTTCCTCATTCTGGTGATAAAGATGGGCGTGGCAGCCCACAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000368732.5 ENST00000368733.4 |
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| CDS-3UTR CAA 90 bp | GTATTGATGACTTTATTATTCTGCAGGTACATGTCCAGGGGCCCAGCCTCTGGGACTGCACCATCAGTGTaGATATCCAACTCTTTGAAC | + |
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Preference number: 5 (lower is better) Translates to: VLMTLLFCRYMSRGPASGTAPSV*ISNSLN Trigger: GTTCAAAGAGTTGGATATCAACACTGATGGTGCAGT...CCCAGAGGCTGGGCCCCTGGACATGTACCTGCAGAATAATAAAGTCATCAATAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000368732.5 ENST00000368733.4 |
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| CDS-3UTR CAA 90 bp | GGTATTGATGACTTTATTATTCTGCAGGTACATGTCCAGGGGCCCAGCCTCTGGACTGCACCATCAGTGTaGATATCCAACTCTTTGAAC | + |
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Preference number: 5 (lower is better) Translates to: GIDDFIILQVHVQGPSLWTAPSV*ISNSLN Trigger: GTTCAAAGAGTTGGATATCAACACTGATGGTGCAGT...CCAGAGGCTGGGCCCCTGGACATGTACCTGCAGAATAATAAAGTCATCAATACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000368732.5 ENST00000368733.4 |
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| CDS GCA 72 bp | ATTTGCATCTGGCCAGGGCAGTACGCAGAGGATTCATaGCCCAAGCGATGGCCTTGTCCTGGCCTGCACTCT | + |
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Preference number: 6 (lower is better) Translates to: ICIWPGQYAEDS*PKRWPCPGLHS Trigger: AGAGTGCAGGCCAGGACAAGGCCATCGCTTGGGGCATGAATCCTCTGCGTACTGCCCTGGCCAGATGCAAAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000477801.1 |
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| CDS CCA 72 bp | CAAACCAGCAGATGGCTATGGCTCTGGTGGGAAGGGTaGGATGATAGGGATACACGTGTGGGAAGGGGAAGG | + |
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Preference number: 6 (lower is better) Translates to: QTSRWLWLWWEG*DDRDTRVGRGR Trigger: CCTTCCCCTTCCCACACGTGTATCCCTATCATCCCACCCTTCCCACCAGAGCCATAGCCATCTGCTGGTTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477801.1 |
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| CDS CCA 72 bp | CCAGGGCAGTACGCAGAGGATTCATGCCCCAAGCGATaGCCTTGTCCTGGCCTGCACTCTCCAAATAACCAA | + |
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Preference number: 6 (lower is better) Translates to: PGQYAEDSCPKR*PCPGLHSPNNQ Trigger: TTGGTTATTTGGAGAGTGCAGGCCAGGACAAGGCCATCGCTTGGGGCATGAATCCTCTGCGTACTGCCCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477801.1 |
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| CDS GCA 72 bp | AACAGAACCTTCTGGGGAATCCCATGGCAGGGAATTTaGATCTGGCCAGGGCAGTACGCAGAGGATTCATGC | + |
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Preference number: 6 (lower is better) Translates to: NRTFWGIPWQGI*IWPGQYAEDSC Trigger: GCATGAATCCTCTGCGTACTGCCCTGGCCAGATGCAAATTCCCTGCCATGGGATTCCCCAGAAGGTTCTGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477801.1 |
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| CDS CCA 72 bp | CTAGGAGACAATGTGCCCTTACCCACTGGAAGGTGCTaGAGGATACTCTCCTTCCTTATCCCTGCCTCACTC | + |
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Preference number: 6 (lower is better) Translates to: LGDNVPLPTGRC*RILSFLIPASL Trigger: GAGTGAGGCAGGGATAAGGAAGGAGAGTATCCTCCAGCACCTTCCAGTGGGTAAGGGCACATTGTCTCCTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000477801.1 |
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| CDS CCA 72 bp | TCTGGTGGGAAGGGTGGGATGATAGGGATACACGTGTaGGAAGGGGAAGGGTCCATTCACACAGAGACATGT | + |
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Preference number: 6 (lower is better) Translates to: SGGKGGMIGIHV*EGEGSIHTETC Trigger: ACATGTCTCTGTGTGAATGGACCCTTCCCCTTCCCACACGTGTATCCCTATCATCCCACCCTTCCCACCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477801.1 |
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| CDS GCA 72 bp | AGGATTCATGCCCCAAGCGATGGCCTTGTCCTGGCCTaGACTCTCCAAATAACCAAACCAGCAGATGGCTAT | + |
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Preference number: 6 (lower is better) Translates to: RIHAPSDGLVLA*TLQITKPADGY Trigger: ATAGCCATCTGCTGGTTTGGTTATTTGGAGAGTGCAGGCCAGGACAAGGCCATCGCTTGGGGCATGAATCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477801.1 |
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| CDS CAA 72 bp | AAACAGAACCTTCTGGGGAATCCCATGGCAGGGAATTaGCATCTGGCCAGGGCAGTACGCAGAGGATTCATG | + |
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Preference number: 6 (lower is better) Translates to: KQNLLGNPMAGN*HLARAVRRGFM Trigger: CATGAATCCTCTGCGTACTGCCCTGGCCAGATGCAAATTCCCTGCCATGGGATTCCCCAGAAGGTTCTGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000477801.1 |
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| CDS CCA 72 bp | TCTCCAAATAACCAAACCAGCAGATGGCTATGGCTCTaGTGGGAAGGGTGGGATGATAGGGATACACGTGTG | + |
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Preference number: 6 (lower is better) Translates to: SPNNQTSRWLWL*WEGWDDRDTRV Trigger: CACACGTGTATCCCTATCATCCCACCCTTCCCACCAGAGCCATAGCCATCTGCTGGTTTGGTTATTTGGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000477801.1 |
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| CDS CCA 72 bp | CTGCACTCTCCAAATAACCAAACCAGCAGATGGCTATaGCTCTGGTGGGAAGGGTGGGATGATAGGGATACA | + |
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Preference number: 6 (lower is better) Translates to: LHSPNNQTSRWL*LWWEGWDDRDT Trigger: TGTATCCCTATCATCCCACCCTTCCCACCAGAGCCATAGCCATCTGCTGGTTTGGTTATTTGGAGAGTGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000477801.1 |
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| CDS CCA 72 bp | GCCACGCCCATCTTTATCACCAGAATGAGGAACTCCTaGAAGTTAACTGCACCATCAGTGTTGATATCCAAC | + |
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Preference number: 6 (lower is better) Translates to: ATPIFITRMRNS*KLTAPSVLISN Trigger: GTTGGATATCAACACTGATGGTGCAGTTAACTTCCAGGAGTTCCTCATTCTGGTGATAAAGATGGGCGTGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000368732.5 ENST00000368733.4 |
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| CDS GCA 72 bp | CTTTATCACCAGAATGAGGAACTCCTGGAAGTTAACTaGACCATCAGTGTTGATATCCAACTCTTTGAACCA | + |
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Preference number: 6 (lower is better) Translates to: LYHQNEELLEVN*TISVDIQLFEP Trigger: TGGTTCAAAGAGTTGGATATCAACACTGATGGTGCAGTTAACTTCCAGGAGTTCCTCATTCTGGTGATAAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000368732.5 ENST00000368733.4 |
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| CDS CAA 72 bp | AAGTTAACTGCACCATCAGTGTTGATATCCAACTCTTaGAACCAGACGTCTGCACCCTTTTTCCTGATATAC | + |
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Preference number: 6 (lower is better) Translates to: KLTAPSVLISNS*NQTSAPFFLIY Trigger: GTATATCAGGAAAAAGGGTGCAGACGTCTGGTTCAAAGAGTTGGATATCAACACTGATGGTGCAGTTAACTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000368732.5 ENST00000368733.4 |
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